Citrus Sinensis ID: 016368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MDQSTSNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHcHHHHHHHccccccHHHHHHcccccccccEEEEccccccccccEEEEEEccccccEEccccccccccccccccccccccccccEEEEEccEEEEEEcccccccccccccEEEEcccccEEcccccccccccEEEEEEccEEEEEEEEccccccccccEEEEEEcccccccccEEEcccccccccccccEEEEEEccEEEEEEcccccccEEEEEEcccccEEEccccccccccccEEEEEEccEEEEEEccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEEccccEEEEEEEccccccEEEcccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEccccccccccEEEEEEcccccccccccccccccccHHHccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEcccccccccccccccccEEEEEEEccEEEEEEcccccccccccccHEEccccccccccEEEEcccccccccccccccEEEEccEEEEEEcccccccccEEEcccccccccccccccccccccEEEEEcccEEEEEEccccEEEEEccccccEEEEccccccccccEEEEccccEEEEEccccEEEEEEcccccccEEEEccccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdqstsnrskiindnnnnstsdhgtqnETILLLlpglpnhladrclsslppallfSVCHSWrrllyspyfppffSLYALLfnnnkpshnnnnyysfnssmeffcfdpisstwnplpappqnpplrllyrhpsflsrklpvqslgvrnnLVLIAAttphflpalasplafnpqsntwffgpqlsiprrwcamgSVGGVVYVASGvgahyrgdvARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMvnlkgngakdgaiYNVELdkwkempegmhagwngpaastmneeELYVVNEGkgrlskydadhDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLasparawlvdpprgfqVVAVHVLPRMCKQD
Flexible Loop (DISEMBL)
mdqstsnrskiindnnnnstsdhGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAhyrgdvarsmkkwdlksdredwkwekkaqlkdgrfsrEAVEAVGFKGNLCMVNLkgngakdgAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKgaekitaaRGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD
Low Complexity Region (SEG)
MDQSTsnrskiindnnnnstsdHGTQNETIllllpglpnhlADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFnnnkpshnnnnyysfnssMEFFCFDPISSTWNplpappqnpplrllYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMgsvggvvyvasgvgaHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD
Disordered region (IsUnstruct)
****************************TILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPL********LRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG*******EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM****
Disordered Region (DISOPRED)
***********************************GLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMC***
Disordered Region (DISEMBL)
*********KIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD
Disordered Region (DISPRO)
*****************************ILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQSTSNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q8GX29	395	F-box/kelch-repeat protei	yes	no	0.892	0.881	0.465	6e-83
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.792	0.830	0.239	3e-09
Q93W93	434	F-box/kelch-repeat protei	no	no	0.805	0.723	0.236	8e-09
Q84M94	421	F-box/kelch-repeat protei	no	no	0.782	0.724	0.229	7e-08
Q9P2G9	620	Kelch-like protein 8 OS=H	yes	no	0.502	0.316	0.251	3e-06
P59280	629	Kelch-like protein 8 OS=M	yes	no	0.502	0.311	0.246	3e-06
O80582	409	F-box/kelch-repeat protei	no	no	0.592	0.564	0.226	3e-05
Q0WW40	383	F-box/kelch-repeat protei	no	no	0.453	0.462	0.264	5e-05
Q9M2C9	358	F-box/kelch-repeat protei	no	no	0.707	0.770	0.206	6e-05
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.756	0.784	0.233	6e-05

>sp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1

 Score =  308 bits (788), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 17/365 (4%)

Query: 33  LLPGLPNHLADRCLSSL-PPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNN 91
           L+ GLP+H+++ CLS +  P+LL +VC  WRRLLYSP FP F SLYAL  ++       +
Sbjct: 35  LIEGLPDHISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDST------S 88

Query: 92  NYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPL-RLLYRHPSFLSRKLPVQSLGVRNNLV 150
           +    N S+ F CF+P+SS W PLP PP +PPL R+LYRHPSF+S  LP+Q +     L+
Sbjct: 89  DTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLI 148

Query: 151 LIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG 210
           LIA +     PA++ PL F+P S++W  GP++  PRRWCA G+  G +Y+ASG+ + +  
Sbjct: 149 LIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSS 208

Query: 211 DVARSMKKWDLKSDRED---WKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD 267
            VA+S++K DL     +   + WEK   ++D RFSREA++AVG++  L MVN+KG+  K+
Sbjct: 209 TVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKE 268

Query: 268 GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE 327
           GAIY+V  D W+ MPE M  GW GP A+ M EE LY V+E +G + KYD +   W EV+ 
Sbjct: 269 GAIYDVVKDDWEPMPEEMLVGWRGPVAA-MEEEILYSVDERRGTVRKYDDEKREWREVVV 327

Query: 328 LAE----LKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVL 383
           +      LKGA ++TA  G++C V  +G +I+VVDV A PA+ W V+ P G + V+VHVL
Sbjct: 328 VEGGEEMLKGATQVTADSGKLCVVTGDG-KIVVVDVAAEPAKIWNVEIPDGLEPVSVHVL 386

Query: 384 PRMCK 388
           PRM +
Sbjct: 387 PRMSQ 391

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 144/364 (39%), Gaps = 55/364 (15%)

Query: 2   DQSTSNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLP---PALLFSVC 58
           +Q T++    IND     T            L+ GLPN +A+ CL  LP    AL  SV 
Sbjct: 3   EQETTSNINTINDQAEEETRTKSQP------LISGLPNDIAELCLLRLPYPYHALYRSVS 56

Query: 59  HSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSS---MEFFCFDPISSTWNPL 115
            SW + + +P F   FS  +L       S      ++FN S   +++   D  S  W  L
Sbjct: 57  SSWNKTITNPRF--LFSKQSLSI-----SSPYLFVFAFNKSTARIQWQSLDLASGRWFVL 109

Query: 116 PAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNT 175
           P  P N   ++   H       L   S+  +  L ++     +      S + +   +N 
Sbjct: 110 PPMP-NSFTKISSPH------ALSCASMPRQGKLFVLGGGDVN-----RSAVVYTALTNR 157

Query: 176 WFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK- 233
           W     +  PR +   G+V G ++ V   VG +  G+    ++ +D   D + W   KK 
Sbjct: 158 WSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGN--GEATTEVESYD--PDNDTWTVVKKL 213

Query: 234 ----AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGW 289
               A+       +E     G+        +       G +Y+ +   W+EM  GM  GW
Sbjct: 214 PMVLAKYDSAVIGKEMCVTEGWAWPFMFPPM-------GQVYDSDEGTWREMSGGMKEGW 266

Query: 290 NGPAASTMNEEELYVVNE-GKGRLSKYDADHDWW----DEVIELAELKGAEKITAARGRV 344
            G   S +  + L+V++E G   +  Y +D D W     E ++  +++    +T A  RV
Sbjct: 267 TG--VSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRV 324

Query: 345 CAVC 348
             V 
Sbjct: 325 FVVA 328

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 145/363 (39%), Gaps = 49/363 (13%)

Query: 14  DNNNNSTSDHGTQNETILL---LLPGLPNHLADRCLSSLPPA---LLFSVCHSWRRLLYS 67
           D N N+     ++ E   +   LLPGLP+ LA  CL  +P A    L  VC  W RL   
Sbjct: 56  DINPNAHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASG 115

Query: 68  PYFPPFFSLYALLFNNNKPSHNNNNYYSF----NSSMEFFCFDPISSTWNPLPAPPQNPP 123
            +F   +S   LL        +    Y F    +  + +  FDPIS  W PLP  P+   
Sbjct: 116 NFF---YSQRKLL------GMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE-- 164

Query: 124 LRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS 183
                 +   +     V S     +L L     P    ++   + +N ++N W   P + 
Sbjct: 165 ------YSEAVGFGCAVLS---GCHLYLFGGKDP-LRGSMRRVIFYNARTNKWHRAPDML 214

Query: 184 IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR 243
             R +     +   +YVA G     +  + RS + +D   +R  W +     + D   + 
Sbjct: 215 RKRHFFGCCVINNCLYVAGGECEGIQRTL-RSAEVYDPNKNR--WSF-----IADMSTAM 266

Query: 244 EAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELY 303
             +  V +     +  L  +       Y+ E++ W  + +GM AGW  P  S      LY
Sbjct: 267 VPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSL--NGRLY 324

Query: 304 VVNEGKG-RLSKYDADHDWWDEVIE-LAELKGAEKITAA-----RGRVCAVCENGERIMV 356
            ++   G +L  +D   D W++ ++  A L  ++ + AA       ++C +  N   + +
Sbjct: 325 GLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAAALVPLHNKLCII-RNNMSMSL 383

Query: 357 VDV 359
           VDV
Sbjct: 384 VDV 386

Arabidopsis thaliana (taxid: 3702)

>sp|Q84M94|FBK15_ARATH F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 144/375 (38%), Gaps = 70/375 (18%)

Query: 16  NNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPA---LLFSVCHSWRRLLYSPYFPP 72
           +N S+SD GT       L+PG+    +  CL     A    + SV  S R L+ S     
Sbjct: 61  DNGSSSDSGT-------LIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYR 113

Query: 73  FFSLYALLFNNNKPSHNNNNYYSFNSSM-EFFCFDPISSTWNPLPAPPQNPPLRLLYRHP 131
              L   L           ++  F+  + E+  FDP S  W  LP+ PQN   R   +  
Sbjct: 114 LRRLQGTL----------EHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADK-- 161

Query: 132 SFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAM 191
                    +SL V  +L++       ++    S L     +N+W     +++PR  C  
Sbjct: 162 ---------ESLAVGTDLLVFGWEVSSYVIYRYSLL-----TNSWSTAKSMNMPR--CLF 205

Query: 192 GSVG-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG 250
           GS   G + V +G G    G +  + + ++     ED  W     L      R+    V 
Sbjct: 206 GSASYGEIAVLAG-GCDSSGRILDTAELYNY----EDQTW---LVLPGMNKRRKMCSGVF 257

Query: 251 FKGNLCMVNLKGNGAKD-------GAIYNVELDKWKEMPE----------GMHAGWNGPA 293
             G   ++   G G ++       G  ++++  KW E+PE          GM A    P 
Sbjct: 258 MDGKFYVIGGIGVGEENEPKVLTCGEEFDLKTRKWTEIPEMSPPRSNQGNGMSAAAMAPP 317

Query: 294 ASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGER 353
              +  ++LY  +     + +YD +   W++V  L E  G+        R C     G+R
Sbjct: 318 LVAVVNDQLYAADHAGMAVRRYDKEKRVWNKVGNLPEQAGSMNGWGLAFRAC-----GDR 372

Query: 354 IMVVDVLASPARAWL 368
           I+V+    +P   ++
Sbjct: 373 IIVIGGPKAPGEGFI 387

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P2G9|KLHL8_HUMAN Kelch-like protein 8 OS=Homo sapiens GN=KLHL8 PE=2 SV=4

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 35/231 (15%)

Query: 131 PSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCA 190
           P   SR+  V  + V   +  +     +    L S   F+P +N W     ++  RR  A
Sbjct: 350 PEMNSRRRHVGVISVEGKVYAVGGHDGN--EHLGSMEMFDPLTNKWMMKASMNTKRRGIA 407

Query: 191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG 250
           + S+GG +Y   G+  +        ++++D++SD    +W   A +   R         G
Sbjct: 408 LASLGGPIYAIGGLDDN---TCFNDVERYDIESD----QWSTVAPMNTPR---------G 451

Query: 251 FKGNLCMVN-LKGNGAKDGAI-------YNVELDKWKEMPE-GMHAGWNGPAASTMNEEE 301
             G++ +VN +   G  DG         Y+  LDKW E+ E G     NG +        
Sbjct: 452 GVGSVALVNHVYAVGGNDGMASLSSVERYDPHLDKWIEVKEMGQRRAGNGVSKL---HGC 508

Query: 302 LYVV-----NEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAV 347
           LYVV     N     + +YD   + WD V  L   +G   I    G++ AV
Sbjct: 509 LYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAV 559

Homo sapiens (taxid: 9606)

>sp|P59280|KLHL8_MOUSE Kelch-like protein 8 OS=Mus musculus GN=Klhl8 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 35/231 (15%)

Query: 131 PSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCA 190
           P   SR+  V  + V   +  +     +    L S   F+P +N W     ++  RR  A
Sbjct: 359 PEMNSRRRHVGVISVEGKVYAVGGHDGN--EHLGSMEMFDPLTNKWMMKASMNTKRRGIA 416

Query: 191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG 250
           + S+GG +Y   G+  +        ++++D++SD    +W   A +   R         G
Sbjct: 417 LASLGGPIYAIGGLDDN---TCFSDVERYDIESD----QWSTVAPMNTPR---------G 460

Query: 251 FKGNLCMVN-LKGNGAKDGAI-------YNVELDKWKEMPE-GMHAGWNGPAASTMNEEE 301
             G++ ++N +   G  DG         Y+  LDKW E+ E G     NG +        
Sbjct: 461 GVGSVALINHVYAVGGNDGVASLSSVERYHPHLDKWIEVKEMGQRRAGNGVSEL---HGC 517

Query: 302 LYVV-----NEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAV 347
           LYVV     N     + +YD   + WD V  L   +G   I    G++ AV
Sbjct: 518 LYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAV 568

Mus musculus (taxid: 10090)

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 104/283 (36%), Gaps = 52/283 (18%)

Query: 33  LLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLL------------------------ 65
           L+PGLP+ LA  CL  +P    + + SVC SWR LL                        
Sbjct: 19  LIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQP 78

Query: 66  YSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNS-SMEFFCFDPISSTWNPLPAPPQNPPL 124
            +P  P   S+   L  + K S + ++   F +       ++   STW+ +  P +    
Sbjct: 79  LTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRVAFPEEE--- 135

Query: 125 RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI 184
                        + +Q  G    ++LI    P  L               W  G  +  
Sbjct: 136 -----QIPLFCECVVLQDAG---KILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKE 187

Query: 185 PRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR 243
            R + A  SV    VYVA   G   + +  RS + +D++ D    +W     + +GR   
Sbjct: 188 SRSFFACASVSPTKVYVAG--GHDDQKNALRSAEVYDVEKD----EWSSVTPMTEGRDEC 241

Query: 244 EAVEAVGFKGNLCMVNLKGNGAK-----DGAIYNVELDKWKEM 281
           +   AVG     C+++  G  ++     DG IY+   D W  +
Sbjct: 242 QGF-AVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSWSRI 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 35/212 (16%)

Query: 33  LLPGLPNHLADRCLSSLPPA---LLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHN 89
           ++PGLP+ LA RC++ L      +L  V   WR L+         + Y+     N  S +
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRG-------ADYSCYKARNGWSGS 60

Query: 90  NNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNL 149
                +  S  ++  +DP +  W+PLP   +   ++  + H  F         + V N L
Sbjct: 61  WLFVLTERSKNQWVAYDPEADRWHPLP---RTRAVQDGWHHSGF-------ACVCVSNCL 110

Query: 150 VLIA-------ATTPHFLPALASP-LAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVA 201
           ++I        ++ PH  P +    + F+P    W     +  PR   A  SV G VYVA
Sbjct: 111 LVIGGCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVA 170

Query: 202 SGVG-AHYRGDVARSMKKWDLKSDREDWKWEK 232
            G    H RG    S + +D  +DR    WE+
Sbjct: 171 GGRNLTHSRG--IPSAEVYDPVADR----WEE 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 24  GTQNETILLLLPGLPNHLADRCLSSLPPAL---LFSVCHSWRRLLYSPYFPPFFSLYALL 80
           G  NET + L+ G+P+ ++  CL+ +P      +  V   WR  + S     + + +   
Sbjct: 12  GQSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEF--- 68

Query: 81  FNNNKPSHNNNNYYSFNSSMEFFCFDPISS--TWNPLPAPPQNPPLRLLYRHPSFLSRKL 138
             N   S         +  +     +P SS  +W  +   P  P           +   +
Sbjct: 69  --NLAESWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYPYIP-----------MREGM 115

Query: 139 PVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF-FGPQLSIPRRWCAMGSVGGV 197
               LG R   + +         A      ++   NTWF   P LS  R + A  ++ G 
Sbjct: 116 GFAVLGKR---LFVLGGCGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGK 172

Query: 198 VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM 257
           +    G+G +       + + WD+     D          D     E  ++    G + +
Sbjct: 173 IIAIGGLGLN-----PNAKRTWDIY----DPLTRTCKSCSDVNIVPEMEDSFVMDGRIYI 223

Query: 258 VNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYD 316
               G G    A+Y+     W+ M + M +GW GPA       +LYV+++  G +L+ + 
Sbjct: 224 RG--GVGGSSTAVYSASSGIWERMDDDMASGWRGPAVVVAG--DLYVLDQTFGAKLTMWC 279

Query: 317 ADHDWWDEVIELAEL 331
            D   W  + +L++L
Sbjct: 280 KDTRMWIHIGKLSQL 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 137/359 (38%), Gaps = 64/359 (17%)

Query: 33  LLPGLPNHLADRCLSSLPPAL---LFSVCHSWRRLLYSPYFPPFFSLYALL----FNNNK 85
           L+PGLP+ +A +CL+ +P A    + SVC  WR ++ S  F     L  +L    +    
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTM 98

Query: 86  PSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV 145
            +   +N +         C     S+  P+P P                  K   + + V
Sbjct: 99  NAGGKDNRWEVMD-----CLGQKLSSLPPMPGPA-----------------KTGFKVVVV 136

Query: 146 RNNLVLIAATTP--HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASG 203
              L++IA        L A A    ++   N+W     L + R   A   V G VYV  G
Sbjct: 137 DGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG 196

Query: 204 VGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN 263
            G    G+   S + +    D E   W     L   R  R    A  F G L ++  + N
Sbjct: 197 HGVD--GESLSSAEVY----DPETCTWTFIESL---RRPRWGCFASAFNGKLYVMGGRSN 247

Query: 264 ----GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE---ELYVVN-EGKGRLSKY 315
                +K   +YN +   W       H   NG    T + E   +L+ ++ +   ++S +
Sbjct: 248 FTIGNSKLLDVYNTQCGSW-------HGSKNGLTMVTAHVEVGKKLFCIDWKNHRKMSVF 300

Query: 316 DADHDWWDEVIELAELKGAEKITAARGRVCAVC-------ENGERIMVVDVLASPARAW 367
           +A+ + W EV+ L  L G+ +     G++           E G+  ++ D  ASP   W
Sbjct: 301 NAEDETW-EVVALP-LSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQW 357

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
224146126	379	predicted protein [Populus trichocarpa]	0.917	0.944	0.607	1e-125
255566022	378	Protein AFR, putative [Ricinus communis]	0.923	0.952	0.599	1e-117
224106600	397	predicted protein [Populus trichocarpa]	0.902	0.886	0.527	1e-109
255582211	399	conserved hypothetical protein [Ricinus	0.902	0.882	0.547	1e-104
357484577	380	F-box/kelch-repeat protein SKIP25 [Medic	0.864	0.886	0.557	1e-99
224120934	399	predicted protein [Populus trichocarpa]	0.951	0.929	0.492	1e-99
356495256	375	PREDICTED: F-box/kelch-repeat protein SK	0.866	0.901	0.550	2e-98
449456923	375	PREDICTED: F-box/kelch-repeat protein SK	0.866	0.901	0.558	1e-94
225427574	458	PREDICTED: F-box/kelch-repeat protein SK	0.879	0.748	0.508	2e-84
297846538	385	F-box family protein [Arabidopsis lyrata	0.933	0.945	0.441	4e-83

>gi|224146126|ref|XP_002325889.1| predicted protein [Populus trichocarpa] gi|222862764|gb|EEF00271.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/362 (60%), Positives = 269/362 (74%), Gaps = 4/362 (1%)

Query: 25  TQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNN 84
           T NET   LLPGLP+HL+  CL+SLPP++LFSV H+WRRLLYS  F PFFSLYALL  ++
Sbjct: 18  TLNET---LLPGLPDHLSQNCLTSLPPSILFSVSHAWRRLLYSSLFAPFFSLYALLSASS 74

Query: 85  KPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG 144
                 +N      S+E   FDPISS W  +P+ P++PPL LL+RHPSFLSRKL VQSL 
Sbjct: 75  SYPTTKDNQVDIIRSIELMSFDPISSLWRSVPSIPKDPPLHLLHRHPSFLSRKLSVQSLT 134

Query: 145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGV 204
           V N+LVLI+ TT  F+PAL+ PL F+P+S  WFFGP  + PRRWCA GSV G VYVASGV
Sbjct: 135 VSNHLVLISGTTHQFVPALSRPLVFHPESKKWFFGPPFTSPRRWCATGSVHGRVYVASGV 194

Query: 205 GAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG 264
           G  Y G+VARSM++WD       W+WE  A LKDGRFSRE + A+G+KG L MVN+KGN 
Sbjct: 195 GPRYSGEVARSMEQWDFSQQGNHWRWENMAPLKDGRFSREPIGAIGYKGKLYMVNVKGNA 254

Query: 265 AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE 324
            K+G +Y+VE ++W +MP GM AGWNGPAA TMNE+ +YVVNE  G LS+YD  +D W +
Sbjct: 255 PKEGLVYDVEENQWNDMPRGMLAGWNGPAA-TMNEDAIYVVNEVTGALSEYDCKNDCWKK 313

Query: 325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLP 384
           VIEL ELK AE+I A RGRVC VC NGE I+VVDV+A PAR W+V+PP+G QV  +H+LP
Sbjct: 314 VIELPELKLAEQIAAGRGRVCVVCANGETIVVVDVMARPARFWVVEPPQGQQVAGLHILP 373

Query: 385 RM 386
           RM
Sbjct: 374 RM 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566022|ref|XP_002523999.1| Protein AFR, putative [Ricinus communis] gi|223536726|gb|EEF38367.1| Protein AFR, putative [Ricinus communis]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/367 (59%), Positives = 274/367 (74%), Gaps = 7/367 (1%)

Query: 25  TQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYF-PPFFSLYALLFNN 83
           T+++T   LLPGLPN LA  CL+S+P  LL SVC +WRRLLYS  F  PFFSL+ALL   
Sbjct: 18  TEDDT---LLPGLPNDLAILCLASVPCTLLLSVCRAWRRLLYSSCFRQPFFSLFALL--- 71

Query: 84  NKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSL 143
           + P ++  N  +  +S++F   DP+SS W  LP P  +PPL LL+ HPSFLSR LP+QSL
Sbjct: 72  SPPPYDPTNNNNTTNSIQFCSLDPLSSEWLTLPNPSIDPPLHLLHHHPSFLSRNLPIQSL 131

Query: 144 GVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASG 203
            V N+LVLIA  T   +PAL+ PL F+PQSN WFFGP  + PRRWCA GSV   VY+ASG
Sbjct: 132 TVSNHLVLIAGATHRLVPALSRPLLFHPQSNRWFFGPPFTTPRRWCATGSVNNTVYLASG 191

Query: 204 VGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN 263
           VG  Y GDVARSM+KWD+K ++  WKWEK   LKDGRFSREAVEAVG+KG LCMVN+KGN
Sbjct: 192 VGLQYNGDVARSMEKWDMKDNKTKWKWEKLGSLKDGRFSREAVEAVGWKGKLCMVNVKGN 251

Query: 264 GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD 323
             KDG +YNV+  KW+ MP GM AGW GPAA+TM+E+ +YVV+E +G+LS+YD ++D W 
Sbjct: 252 APKDGWVYNVDEGKWENMPLGMLAGWTGPAAATMDEQVMYVVDEVQGKLSEYDGENDSWK 311

Query: 324 EVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVL 383
           ++IEL  LKGA +ITA R RVC VC + E+I VVD +A+PAR W+VDPP G QVVA+H+L
Sbjct: 312 KIIELPILKGATQITAGRRRVCVVCGDREKIAVVDAVATPARVWMVDPPSGHQVVALHIL 371

Query: 384 PRMCKQD 390
           PR+ K D
Sbjct: 372 PRLSKHD 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106600|ref|XP_002314220.1| predicted protein [Populus trichocarpa] gi|222850628|gb|EEE88175.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/368 (52%), Positives = 262/368 (71%), Gaps = 16/368 (4%)

Query: 33  LLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNN 92
           L+PGLPN +A  CLS + P+ L+SVCHSWRRL+YSP FPPFFSLYA+L      S N N+
Sbjct: 35  LIPGLPNDIAQLCLSLVHPSTLYSVCHSWRRLIYSPSFPPFFSLYAVL-----SSTNTNH 89

Query: 93  YYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI 152
               N+S++FF FDPISS W+ LP PP +PPL L+ RHPSF+SR LP+QS+     L+L+
Sbjct: 90  NLPDNNSIQFFNFDPISSRWDSLPPPPPDPPLHLILRHPSFISRDLPIQSISASYRLILL 149

Query: 153 AATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDV 212
           AAT+  F PAL+ PL FNP S +W FGP L+ PRRWCA GS  G VYVASG+G+ Y  DV
Sbjct: 150 AATSHSFSPALSRPLVFNPLSGSWAFGPPLATPRRWCAAGSAHGTVYVASGIGSQYNTDV 209

Query: 213 ARSMKKWDLKSDR----------EDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKG 262
           A+S++KWDL++ +            WKW K  +LK+GRFSR+A++AVG++G LCMVN+KG
Sbjct: 210 AKSLEKWDLQNQKAMISNIRNKTTTWKWVKVKELKNGRFSRDAIDAVGWRGKLCMVNMKG 269

Query: 263 NGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW 322
           + AK+G +Y+ E D W++MP+GM AGW GP A+ M+EE +YVV+E KG L KYD + D W
Sbjct: 270 DAAKEGIVYDTEKDTWEDMPQGMVAGWRGPVAA-MDEEVMYVVDEAKGVLRKYDPERDCW 328

Query: 323 DEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHV 382
           + ++E   L GA++I A  GRVC +C     ++V+DV+A P R W+V+ P GF+   +H+
Sbjct: 329 ERIMESERLIGAQQIAAGGGRVCVICGGSTELVVLDVVALPVRLWVVETPPGFEAFRIHI 388

Query: 383 LPRMCKQD 390
           LPR+ + D
Sbjct: 389 LPRISRPD 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582211|ref|XP_002531898.1| conserved hypothetical protein [Ricinus communis] gi|223528465|gb|EEF30497.1| conserved hypothetical protein [Ricinus communis]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/369 (54%), Positives = 267/369 (72%), Gaps = 17/369 (4%)

Query: 33  LLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNN 92
           L+PGLP+H+A  CLS +PP+LL+SVCHSWRRL+YSP FPPF SLYA+L      S N + 
Sbjct: 30  LIPGLPDHVAQLCLSLVPPSLLYSVCHSWRRLIYSPAFPPFLSLYAVL-----SSINTDR 84

Query: 93  YYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI 152
           Y   ++S++FF FDPISSTW+ LP PP +PPLR + RHPSF+SR LP+QS+ V  +L+L+
Sbjct: 85  YGDCSNSIKFFNFDPISSTWDLLPPPPPDPPLRPIIRHPSFISRHLPIQSVTVSGHLILL 144

Query: 153 AATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGD 211
           AATT +F PAL+ P  FNP S  W FGP L+ PRRWCA G++    VYVASG+G+ +  D
Sbjct: 145 AATTDNFYPALSRPFIFNPVSRRWSFGPPLTTPRRWCAAGAINNSTVYVASGIGSQFSAD 204

Query: 212 VARSMKKWDLKSDRED---------WKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKG 262
           +A+S++KW+   D +          WKWEK   LKDGRFSR+A++A+G++G LCMVN+KG
Sbjct: 205 IAKSVEKWEFLRDEKRTRSSNQSCLWKWEKVKGLKDGRFSRDAIDAIGWRGKLCMVNVKG 264

Query: 263 NGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW 322
           + AK+G +Y+ + D W++MP GM AGW GP A+ M+EE +YVV+E KG L KYD   D W
Sbjct: 265 DAAKEGLVYDTKKDLWEDMPIGMLAGWKGPVAA-MDEEVMYVVDEVKGALRKYDPSKDVW 323

Query: 323 DEVIELAE-LKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVH 381
           + +I  +E  KGA++I AA GRVC VCE G  I VVDV+A+P R W +D P GF+ VAVH
Sbjct: 324 ENIITESENFKGAQQIAAAGGRVCVVCEGGNGIAVVDVVAAPVRLWTMDTPPGFEAVAVH 383

Query: 382 VLPRMCKQD 390
           +LPRM K +
Sbjct: 384 ILPRMSKPE 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484577|ref|XP_003612576.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula] gi|355513911|gb|AES95534.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula]

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/355 (55%), Positives = 259/355 (72%), Gaps = 18/355 (5%)

Query: 32  LLLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNN 91
           LL+PGLP+H+A  CLSS+ P+LLF VCHSWRRL+YSP FPPFFSLYA+L     P  +++
Sbjct: 40  LLIPGLPDHIAQLCLSSINPSLLFKVCHSWRRLIYSPSFPPFFSLYAIL----SPPKSHH 95

Query: 92  NYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVL 151
           ++     S++F  FDPIS+TW  LP PP      +L  HPSFLSR L VQS+ V +NL+L
Sbjct: 96  SH-----SIQFHNFDPISNTWKILPPPPPL--HHILLHHPSFLSRNLSVQSISVSDNLIL 148

Query: 152 IAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGD 211
           +AATT +  PAL+ PL FNP S  W  GP L+ PRRWCA+G+  G+VYVASG+G+H+  D
Sbjct: 149 LAATTHNLTPALSHPLIFNP-SQGWSVGPALTNPRRWCALGTSEGMVYVASGIGSHFSVD 207

Query: 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIY 271
           VA+S++KWD  +D     WEKK  +KDGRFSREAV+AVG++G L MVN+KG+ AK+G +Y
Sbjct: 208 VAKSIEKWDPINDP---IWEKKTDMKDGRFSREAVDAVGWRGKLYMVNVKGDAAKEGVVY 264

Query: 272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL 331
           +VE D WKEMPEGM  G+ GP A+ M EE +YVV+E KG LS+Y+++ D W+++ E   L
Sbjct: 265 DVEEDTWKEMPEGMLLGFRGPVAA-MEEEVMYVVDEAKGILSRYNSEDDIWEKIFESQRL 323

Query: 332 KGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM 386
           KGAE++ A +GR+C V   G  I VVDV+A P R  +V+ P GF+ VAVHVLPRM
Sbjct: 324 KGAEQMVAKQGRICVVSTAG--ISVVDVVAVPPRISVVELPEGFEAVAVHVLPRM 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120934|ref|XP_002330862.1| predicted protein [Populus trichocarpa] gi|222872684|gb|EEF09815.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/396 (49%), Positives = 261/396 (65%), Gaps = 25/396 (6%)

Query: 5   TSNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSLPPALLFSVCHSWRRL 64
           ++ R K+  D + N    H  Q      L+PGL +H+A   LS + P+ L+ VCHSWRRL
Sbjct: 18  SAKRRKLTTDQHQN----HQEQP-----LIPGLTDHVAQLSLSLVHPSTLYPVCHSWRRL 68

Query: 65  LYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPL 124
           +YS  FPPF SLYA+L      S N N+  S N+ ++ F FDPISS W+ LP PP +PPL
Sbjct: 69  IYSLSFPPFLSLYAVL-----SSTNINHRLSNNNPIQSFNFDPISSKWDSLPPPPPDPPL 123

Query: 125 RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI 184
            LL RHP F+SR LP+QS+     L+LIAAT+ +F PAL+ PL FNP S  W FGP L+ 
Sbjct: 124 HLLLRHPCFISRDLPIQSISACGRLILIAATSHNFSPALSRPLVFNPLSGVWGFGPPLTT 183

Query: 185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDRE----------DWKWEKKA 234
           PRRWCA GS    VYVASG+G+ +  DV++S++KWDL+S              WKWEK  
Sbjct: 184 PRRWCAAGSAKDTVYVASGIGSQFNTDVSKSVEKWDLQSKNVGISTIANKTITWKWEKVK 243

Query: 235 QLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA 294
            LKDGRF R+A++AVG++G LCMVN+KG+  K+G +Y+ E D W+ MPEGM AGW GP A
Sbjct: 244 GLKDGRFCRDAIDAVGWRGKLCMVNMKGDAPKEGLVYDTEKDAWENMPEGMLAGWRGPVA 303

Query: 295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERI 354
           S M+EE ++VV+E +G L KYD + D+W+ ++E   L GA+KI A  GRVC +      I
Sbjct: 304 S-MDEETMFVVDEARGVLRKYDPEKDYWEHMMESERLVGAQKIAAGGGRVCVIRGCSTEI 362

Query: 355 MVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD 390
           +V+DV A P + W+V  P GF+ +A+H+LPRM + D
Sbjct: 363 VVLDVAALPVKLWVVKTPPGFEALAIHILPRMSRPD 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495256|ref|XP_003516495.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Glycine max]

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/354 (55%), Positives = 248/354 (70%), Gaps = 16/354 (4%)

Query: 33  LLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNN 92
           L+PGLP+H+A  CLSS+ P LLFS+ HSWRRL+YSP FPPFFSLYA+L      SH++++
Sbjct: 34  LIPGLPDHIAQLCLSSINPCLLFSISHSWRRLIYSPSFPPFFSLYAIL------SHSHSS 87

Query: 93  YYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI 152
                + ++F  FDPIS+TW PLP  P    L L     SFLSR L VQS+   N LVL+
Sbjct: 88  -----AVIQFHTFDPISATWLPLPPHPPLHHLLLRRHP-SFLSRNLSVQSVSAANRLVLL 141

Query: 153 AATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDV 212
           AATT +  PAL  PL F+P + TW FGP LS PRRWCA+GS+G  VYVASG+G+H+   V
Sbjct: 142 AATTHNLSPALPRPLIFHPLTKTWSFGPTLSTPRRWCALGSLGPTVYVASGIGSHFSIHV 201

Query: 213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN 272
           ARS++KW+L++      WEKK +LKDGRFSREA++AVG+K  LCMVN+KG+ AK+G +Y+
Sbjct: 202 ARSLQKWNLQNPNA--VWEKKTELKDGRFSREAIDAVGWKQKLCMVNVKGDAAKEGVVYD 259

Query: 273 VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK 332
           V  D WKEMPEGM  GW GP A+ M EE +YVV+E KG L +Y  + D W+E++E   LK
Sbjct: 260 VAEDAWKEMPEGMLHGWRGPVAA-MEEEVMYVVDEAKGVLRRYVEEEDSWEEILENERLK 318

Query: 333 GAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM 386
           GAEKI A RG++C V  +   I VVDV A   R W V  P GF+ V VH+LPR+
Sbjct: 319 GAEKIVAWRGKLCVVSASS-GISVVDVAAPSPRIWSVRLPEGFEPVTVHILPRI 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456923|ref|XP_004146198.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus] gi|449521327|ref|XP_004167681.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/356 (55%), Positives = 256/356 (71%), Gaps = 18/356 (5%)

Query: 33  LLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNN 92
           LLPGLP+H+A  CLS +PP+LLFSV  SWRRLLYSP FPPF S                 
Sbjct: 30  LLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSS-------------LYAL 76

Query: 93  YYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI 152
             S ++S++FF FDPISS W+PLP PP +P   LL  HPSFLSR LPVQSL V  +L+L+
Sbjct: 77  LSSSSNSLDFFNFDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLTVSGHLLLL 136

Query: 153 AATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDV 212
           AATT + LPAL  PL F+P SN+W   P L  PRRWCA G++ G VYVASG+G+ +  DV
Sbjct: 137 AATTYNLLPALPRPLLFSPFSNSWRLAPPLPTPRRWCAAGALHGSVYVASGIGSFFSTDV 196

Query: 213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN 272
           ARS+++WD KS+  D  WEK + LKDG+FSR+A++AVG+KG LCMVN+KG+  K+G +Y+
Sbjct: 197 ARSVERWDFKSNGAD-GWEKVSGLKDGKFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYD 255

Query: 273 VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK 332
           +E D+W+EMPEGM  GW GP A+ M+E+++YVV+E  G L +YD++ D+W+EV+E   LK
Sbjct: 256 LEKDEWEEMPEGMIEGWRGPVAA-MDEKDMYVVDEISGSLRRYDSEKDFWEEVMESNRLK 314

Query: 333 GAEKITAARGRVCAVCENGER--IMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM 386
           GA ++ A  GRVC VC  G R  I+VVDV+ SPAR W+   P G +VVAVHVLPRM
Sbjct: 315 GAVQMAAGGGRVCVVC-GGSRGEIVVVDVVTSPARLWVEPTPPGTEVVAVHVLPRM 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427574|ref|XP_002266906.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Vitis vinifera]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/360 (50%), Positives = 241/360 (66%), Gaps = 17/360 (4%)

Query: 33  LLPGLPNHLADRCLSSLPPALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNN 92
           LLPGLP+H+A  CLS L P++LF+V  +WR  +YS  FPP  S+Y +L         +++
Sbjct: 109 LLPGLPDHIAHLCLSRLHPSILFAVSCAWREFIYSSAFPPHLSIYTVL---------SSS 159

Query: 93  YYSFNSSMEFFCFDPISSTWNPLPAPPQNPP-LRLLYRHPSFLSRKLPVQSLGVRNNLVL 151
             S   ++ FF FDPI S W  LP PP + P LR+L  HPSFLSR+LPVQSL V   LV+
Sbjct: 160 IDSGGDAVHFFSFDPIQSRWLQLPPPPPSDPPLRVLLTHPSFLSRRLPVQSLAVAGQLVV 219

Query: 152 IAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGD 211
           +AAT    +PAL  PL F+P S TW FGP+L  PRRWCA G++GG VYVA G+G  Y  +
Sbjct: 220 LAATAHGLVPALHRPLIFDPMSRTWRFGPRLLAPRRWCAAGTLGGAVYVAGGMGGSYSLE 279

Query: 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIY 271
           VA+++++W++++D      E+   L+D R SREA+EAVG++G L MVN+KG   K+GA+Y
Sbjct: 280 VAKTVERWEVRNDVV----ERMGGLRDVRMSREAIEAVGWRGKLWMVNVKGVATKEGAVY 335

Query: 272 NVELDKWKEMPEGMHAGWNGP---AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIEL 328
           +V  D W+EMPEGM  GW GP    A     EE+YVV+EGKG L KYD + D W+EV+E 
Sbjct: 336 DVASDVWEEMPEGMLGGWRGPAAAMAMAGGAEEMYVVDEGKGILRKYDGERDAWEEVVEA 395

Query: 329 AELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCK 388
             L+GA+ + A  GRV  V   G R++VVDV+AS  R W+VDPP G   VAVHVLPRM +
Sbjct: 396 EVLRGADHMAAGGGRVVVVSGGGGRVVVVDVVASTPRIWVVDPPEGLDAVAVHVLPRMSR 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846538|ref|XP_002891150.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336992|gb|EFH67409.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 174/394 (44%), Positives = 250/394 (63%), Gaps = 30/394 (7%)

Query: 6   SNRSKIINDNNNNSTSDHGTQNETILLLLPGLPNHLADRCLSSL-PPALLFSVCHSWRRL 64
           + R +I+  N N++             L+ GLP+H+++ CLS +  P+LL +VC  WRRL
Sbjct: 11  AKRRRIVTGNENSA-------------LIEGLPDHISEICLSKVNRPSLLSAVCTRWRRL 57

Query: 65  LYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPL 124
           LYSP FP F SLYAL  ++       ++    N S+ F CF+P+S  W PLP PP + PL
Sbjct: 58  LYSPEFPSFPSLYALFVDST------SDPGRVNPSVRFMCFNPVSPKWYPLPPPPPDLPL 111

Query: 125 -RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS 183
            R+LYRHPSF+S  LP+Q +     L+LIA +     PA++ PL F+P S++W  GPQ+ 
Sbjct: 112 HRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPQIG 171

Query: 184 IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDRED---WKWEKKAQLKDGR 240
            PRRWCA G+  G +Y+ASG+ + +   VA+S++K DL     +   + WEK   ++D R
Sbjct: 172 SPRRWCATGACDGAIYIASGISSQFSSTVAKSIEKLDLTDQNRNNRRFNWEKLRDMRDLR 231

Query: 241 FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE 300
           FSREA++AVG++  L MVN+KG+  K+GAIY+V  D W+ MPE M  GW GP A+ M EE
Sbjct: 232 FSREAIDAVGYRRKLLMVNVKGDAIKEGAIYDVVKDDWEAMPEEMLVGWRGPVAA-MEEE 290

Query: 301 ELYVVNEGKGRLSKYDADHDWWDE--VIELAE--LKGAEKITAARGRVCAVCENGERIMV 356
            LY V+E +G + KYD ++  W E  V++  E  LKGA ++TA  G++C V  +G +I+V
Sbjct: 291 ILYSVDERRGTVRKYDDENREWREVAVVDGGEELLKGATQVTADSGKLCVVTVDG-KIVV 349

Query: 357 VDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQD 390
            DV+A PA+ W V+ P G + V+VHVLPRM + D
Sbjct: 350 ADVVAEPAKIWNVEIPDGLEPVSVHVLPRMSQPD 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2197540	395	KUF1 "KAR-UP F-box 1" [Arabido	0.856	0.845	0.427	2.4e-67

TAIR|locus:2197540 KUF1 "KAR-UP F-box 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 150/351 (42%), Positives = 204/351 (58%)

Query:    45 CLSSLP-PALLFSVCHSWRRLLYSPYFPPFFSLYALLFXXXXXXXXXXXXXXXXXXMEFF 103
             CLS +  P+LL +VC  WRRLLYSP FP F SLYAL                    + F 
Sbjct:    47 CLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPS------VRFM 100

Query:   104 CFDPISSTWNXXXXXXXXX-XXXXXYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPA 162
             CF+P+SS W                YRHPSF+S  LP+Q +     L+LIA +     PA
Sbjct:   101 CFNPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPA 160

Query:   163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMXXXXXXXXXXXXXXXHYRGDVARSMKKWDL- 221
             ++ PL F+P S++W  GP++  PRRWCA                 +   VA+S++K DL 
Sbjct:   161 ISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLT 220

Query:   222 KSDRED--WKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK 279
             + +R +  + WEK   ++D RFSREA++AVG++  L MVN+KG+  K+GAIY+V  D W+
Sbjct:   221 EQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWE 280

Query:   280 EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI--ELAE--LKGAE 335
              MPE M  GW GP A+ M EE LY V+E +G + KYD +   W EV+  E  E  LKGA 
Sbjct:   281 PMPEEMLVGWRGPVAA-MEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGAT 339

Query:   336 KITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRM 386
             ++TA  G++C V  +G +I+VVDV A PA+ W V+ P G + V+VHVLPRM
Sbjct:   340 QVTADSGKLCVVTGDG-KIVVVDVAAEPAKIWNVEIPDGLEPVSVHVLPRM 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      390       315   0.00082  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  268 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.13u 0.11s 23.24t   Elapsed:  00:00:01
  Total cpu time:  23.13u 0.11s 23.24t   Elapsed:  00:00:01
  Start:  Sat May 11 03:11:31 2013   End:  Sat May 11 03:11:32 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GX29	SKI25_ARATH	No assigned EC number	0.4657	0.8923	0.8810	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIX000514 hypothetical protein (379 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA02713	557	hypothetical protein; Provisional	99.98
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
PLN02193	470	nitrile-specifier protein	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.9
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.85
KOG1230	521	consensus Protein containing repeated kelch motifs	99.85
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.84
KOG1230	521	consensus Protein containing repeated kelch motifs	99.84
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.74
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.63
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.44
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.18
PF13964	50	Kelch_6: Kelch motif	99.13
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.96
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.94
PF13964	50	Kelch_6: Kelch motif	98.84
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.84
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.83
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.82
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.7
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.62
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.57
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.53
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.52
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.49
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.48
smart00612	47	Kelch Kelch domain.	98.45
smart00612	47	Kelch Kelch domain.	98.44
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	98.3
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
PF13854	42	Kelch_5: Kelch motif	98.26
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.23
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.21
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.19
PLN02772	398	guanylate kinase	98.15
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.14
PLN02772	398	guanylate kinase	98.12
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.11
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.66
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.43
PF13854	42	Kelch_5: Kelch motif	97.36
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.27
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.2
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.0
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.76
KOG2055	514	consensus WD40 repeat protein [General function pr	96.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.55
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.37
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.35
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.24
KOG0646	476	consensus WD40 repeat protein [General function pr	95.98
PRK11028	330	6-phosphogluconolactonase; Provisional	95.97
KOG2055	514	consensus WD40 repeat protein [General function pr	95.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	95.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.74
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.73
PRK11028	330	6-phosphogluconolactonase; Provisional	95.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.71
KOG0296	399	consensus Angio-associated migratory cell protein	95.53
PRK04792	448	tolB translocation protein TolB; Provisional	95.5
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.41
KOG0315	311	consensus G-protein beta subunit-like protein (con	95.36
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.29
PF03089	337	RAG2: Recombination activating protein 2; InterPro	95.23
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.18
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	95.13
PRK00178	430	tolB translocation protein TolB; Provisional	95.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.96
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.83
PRK04792	448	tolB translocation protein TolB; Provisional	94.78
PLN00181	793	protein SPA1-RELATED; Provisional	94.69
PRK00178	430	tolB translocation protein TolB; Provisional	94.68
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.45
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.42
PRK05137	435	tolB translocation protein TolB; Provisional	94.35
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	94.32
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	94.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.25
KOG0278	334	consensus Serine/threonine kinase receptor-associa	94.19
PRK04922	433	tolB translocation protein TolB; Provisional	94.12
PRK05137	435	tolB translocation protein TolB; Provisional	94.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.02
KOG0316	307	consensus Conserved WD40 repeat-containing protein	93.97
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.94
PRK13684	334	Ycf48-like protein; Provisional	93.93
KOG0296	399	consensus Angio-associated migratory cell protein	93.79
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.69
PRK04922	433	tolB translocation protein TolB; Provisional	92.33
PF03089	337	RAG2: Recombination activating protein 2; InterPro	92.08
PRK03629	429	tolB translocation protein TolB; Provisional	91.96
PLN00181	793	protein SPA1-RELATED; Provisional	91.96
KOG0286	343	consensus G-protein beta subunit [General function	91.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.55
KOG0318	603	consensus WD40 repeat stress protein/actin interac	91.28
KOG0647	347	consensus mRNA export protein (contains WD40 repea	91.18
PTZ00420	568	coronin; Provisional	91.06
smart00284	255	OLF Olfactomedin-like domains.	90.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.67
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.58
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.5
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	90.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	90.26
KOG0266	456	consensus WD40 repeat-containing protein [General	89.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.9
KOG0293	519	consensus WD40 repeat-containing protein [Function	89.77
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.63
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	89.6
KOG0289	506	consensus mRNA splicing factor [General function p	89.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.25
KOG0645	312	consensus WD40 repeat protein [General function pr	89.18
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	88.77
PRK13684	334	Ycf48-like protein; Provisional	88.69
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	88.49
KOG0282	503	consensus mRNA splicing factor [Function unknown]	88.38
PRK01742	429	tolB translocation protein TolB; Provisional	87.99
PRK02889	427	tolB translocation protein TolB; Provisional	87.83
PRK10115	686	protease 2; Provisional	87.47
KOG0316	307	consensus Conserved WD40 repeat-containing protein	87.43
KOG0266	456	consensus WD40 repeat-containing protein [General	86.75
PRK03629	429	tolB translocation protein TolB; Provisional	86.5
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	86.47
PTZ00421	493	coronin; Provisional	86.38
KOG2048	691	consensus WD40 repeat protein [General function pr	86.32
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.29
PRK02889	427	tolB translocation protein TolB; Provisional	85.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.52
PRK04043	419	tolB translocation protein TolB; Provisional	84.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	84.68
KOG0647	347	consensus mRNA export protein (contains WD40 repea	84.65
PRK04043	419	tolB translocation protein TolB; Provisional	83.93
KOG2321	703	consensus WD40 repeat protein [General function pr	83.85
KOG0640	430	consensus mRNA cleavage stimulating factor complex	83.37
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.78
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	82.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	82.25
COG3391	381	Uncharacterized conserved protein [Function unknow	82.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	82.02
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	81.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.72
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.46
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	81.43
smart00284	255	OLF Olfactomedin-like domains.	81.19
KOG1274	933	consensus WD40 repeat protein [General function pr	80.94
COG4946	668	Uncharacterized protein related to the periplasmic	80.64
KOG0318	603	consensus WD40 repeat stress protein/actin interac	80.58

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=8.6e-38  Score=307.06  Aligned_cols=296  Identities=19%  Similarity=0.292  Sum_probs=243.5

Q ss_pred             CCCCcHHHHHHHHhcCC----chhhH---hhhHhHHHhhcCCC----CCC------cccEEEEeecCCCCCCCCCCcccC
Q 016368           34 LPGLPNHLADRCLSSLP----PALLF---SVCHSWRRLLYSPY----FPP------FFSLYALLFNNNKPSHNNNNYYSF   96 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP----l~~~r---~Vck~W~~l~~s~~----f~~------~~~l~~~~~~~~~~~~~~~~~~~~   96 (390)
                      +|-||...+.+++...+    -..++   .-.|.|+.+-....    ...      ...|+++++-.+          ..
T Consensus       228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~----------~~  297 (571)
T KOG4441|consen  228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR----------QG  297 (571)
T ss_pred             ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC----------CC
Confidence            46788888888877776    11222   22345655554321    111      345666654330          11


Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW  176 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W  176 (390)
                      .....+.+|||.++.|..++++|. +|.+              +.++++.+.+|++||.+. ....++.+++|||.+++|
T Consensus       298 ~~~~~ve~yd~~~~~w~~~a~m~~-~r~~--------------~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  298 QSLRSVECYDPKTNEWSSLAPMPS-PRCR--------------VGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             cccceeEEecCCcCcEeecCCCCc-cccc--------------ccEEEECCEEEEEccccC-CCcccceEEEecCCCCce
Confidence            334568999999999999999998 7754              277788889999999873 226889999999999999


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368          177 FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC  256 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly  256 (390)
                      ..+++|+.+|..+++++++|+||++||.++   ...++++|+|||.++.    |+.+++|+..+.   ++++++++|+||
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~---~~gv~~~~g~iY  431 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRS---GHGVAVLGGKLY  431 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCccee---eeEEEEECCEEE
Confidence            999999999999999999999999999996   6788899999999999    999999998776   799999999999


Q ss_pred             EEcccCCC---CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccc
Q 016368          257 MVNLKGNG---AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIEL  328 (390)
Q Consensus       257 v~gg~g~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~  328 (390)
                      ++||....   ..++++|||.+++|+.+++ |+.+|.++++++ ++|+||++||+++     .+++||+++++|+.+..|
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCC-cccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence            99986333   3678999999999999999 999999999998 9999999999776     689999999999999999


Q ss_pred             cccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEec
Q 016368          329 AELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       329 p~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~~  370 (390)
                      +.+|...++++++++||++|+..     +.+..||+.+.   +|...
T Consensus       510 ~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d---~W~~~  553 (571)
T KOG4441|consen  510 TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD---TWTEV  553 (571)
T ss_pred             ccccccccEEEECCEEEEEecccCccccceeEEcCCCCC---ceeeC
Confidence            99999999999999999998652     37888888887   89943

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=307.01  Aligned_cols=241  Identities=12%  Similarity=0.228  Sum_probs=208.6

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      .+.+||+.+++|..++++|. ++..              +.++++++.+|++||..... ...+++++|||.+++|..++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~-~r~~--------------~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPN-HIIN--------------YASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCc-cccc--------------eEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCC
Confidence            47899999999999999998 6643              16777888999999864222 45688999999999999999


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368          181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL  260 (390)
Q Consensus       181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg  260 (390)
                      +|+.+|..+++++++++||++||.+.   ....+++++|||.+++    |+.+++|+.++.   .+++++++|+||++||
T Consensus       337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~---~~~~~~~~g~IYviGG  406 (557)
T PHA02713        337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALS---SYGMCVLDQYIYIIGG  406 (557)
T ss_pred             CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCcccc---cccEEEECCEEEEEeC
Confidence            99999999999999999999999865   3457789999999999    999999998877   5888899999999997


Q ss_pred             cCCC--------------------CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC------cEEE
Q 016368          261 KGNG--------------------AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG------RLSK  314 (390)
Q Consensus       261 ~g~~--------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~------~v~~  314 (390)
                      ....                    ...+++||+.+++|+.+++ |+.++..+++++ ++|+||++||.++      .+++
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~  484 (557)
T PHA02713        407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFR  484 (557)
T ss_pred             CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEE
Confidence            5311                    2457899999999999999 889999999888 9999999999642      5789


Q ss_pred             EECCC-CceEEcccccccccceeEEEECCEEEEEeeCCc--eEEEEEcCCCCCcceEecCC
Q 016368          315 YDADH-DWWDEVIELAELKGAEKITAARGRVCAVCENGE--RIMVVDVLASPARAWLVDPP  372 (390)
Q Consensus       315 yd~~~-~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~--~v~~~d~~~~~~~~W~~~~p  372 (390)
                      |||++ ++|+.+++||.+|..+++++++|+||++||...  .+..||+.+.   +|....|
T Consensus       485 Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~---~W~~~~~  542 (557)
T PHA02713        485 YNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY---EWNHICH  542 (557)
T ss_pred             ecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc---cccchhh
Confidence            99999 899999999999999999999999999987544  6888999888   8996544

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=272.75  Aligned_cols=237  Identities=15%  Similarity=0.253  Sum_probs=201.9

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      ....|++.+++|..++..+. ...               +.+++.++.+|++||..... ...+++++||+.+++|..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~  327 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-VYC---------------FGSVVLNNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVP  327 (534)
T ss_pred             eeeecchhhhhcccccCccc-ccc---------------ceEEEECCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECC
Confidence            35578888899998876554 221               16778888999999875432 45678999999999999999


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368          181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL  260 (390)
Q Consensus       181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg  260 (390)
                      +|+.+|..+++++++++||++||...   ....+++++||+.+++    |+.++++|.++.   .++++.++|++|++||
T Consensus       328 ~~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~---~~~~~~~~~~iYv~GG  397 (534)
T PHA03098        328 ELIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRY---NPCVVNVNNLIYVIGG  397 (534)
T ss_pred             CCCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCc---cceEEEECCEEEEECC
Confidence            99999999999999999999999874   4567899999999999    999999998776   6888899999999997


Q ss_pred             cCCC---CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--------cEEEEECCCCceEEccccc
Q 016368          261 KGNG---AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--------RLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       261 ~g~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--------~v~~yd~~~~~W~~i~~~p  329 (390)
                      ...+   ..++++||+.+++|+.+++ +|.++.++++++ .+++||++||...        .+++||+++++|++++.++
T Consensus       398 ~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~  475 (534)
T PHA03098        398 ISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN  475 (534)
T ss_pred             cCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC
Confidence            5222   3568899999999999998 888898888887 9999999999542        4999999999999999999


Q ss_pred             ccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368          330 ELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       330 ~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~  369 (390)
                      .+|..+++++++++|||+||..     +++++||+.+.   +|..
T Consensus       476 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~  517 (534)
T PHA03098        476 FPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN---TWTL  517 (534)
T ss_pred             cccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC---EEEe
Confidence            8898899999999999998653     47999999988   8984

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=5.5e-32  Score=253.61  Aligned_cols=232  Identities=15%  Similarity=0.225  Sum_probs=185.2

Q ss_pred             CCCCceeCCC----CCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCC
Q 016368          108 ISSTWNPLPA----PPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS  183 (390)
Q Consensus       108 ~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~  183 (390)
                      ....|.++..    +|. ||..              +.++++++.+|++||.........+++++||+.+++|..++++.
T Consensus         5 ~~~~W~~~~~~~~~~P~-pR~~--------------h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~   69 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPG-PRCS--------------HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG   69 (341)
T ss_pred             cCCeEEEecCCCCCCCC-CCCc--------------ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC
Confidence            5567998876    455 6643              16777788999998875432234579999999999999988764


Q ss_pred             -CCC---cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC-----CCCCccccceEEEEECCE
Q 016368          184 -IPR---RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL-----KDGRFSREAVEAVGFKGN  254 (390)
Q Consensus       184 -~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~-----~~~~~~r~~~~~~~~~g~  254 (390)
                       .+|   ..+++++++++||++||...   ....+++++||+++++    |+.++.+     |.++   ..+++++.+++
T Consensus        70 ~~p~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R---~~~~~~~~~~~  139 (341)
T PLN02153         70 DVPRISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEAR---TFHSMASDENH  139 (341)
T ss_pred             CCCCCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCc---eeeEEEEECCE
Confidence             344   36888999999999999875   3456799999999999    9999877     4444   47889999999


Q ss_pred             EEEEcccCCC--------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC-------------Cc
Q 016368          255 LCMVNLKGNG--------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK-------------GR  311 (390)
Q Consensus       255 lyv~gg~g~~--------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~-------------~~  311 (390)
                      |||+||....        ..++++||+++++|+.++..  .+.+|.++++++ ++++||++||..             ++
T Consensus       140 iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~  218 (341)
T PLN02153        140 VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNA  218 (341)
T ss_pred             EEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCc
Confidence            9999986321        13578999999999998862  236677888887 999999998742             37


Q ss_pred             EEEEECCCCceEEccc---ccccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceE
Q 016368          312 LSKYDADHDWWDEVIE---LAELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWL  368 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~  368 (390)
                      +++||+++++|+++..   +|.+|..+++++++++|||+|+..              ++++.||+.+.   .|+
T Consensus       219 v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~  289 (341)
T PLN02153        219 VQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWE  289 (341)
T ss_pred             eEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc---EEE
Confidence            9999999999999874   577888899999999999999741              37999999888   898

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.7e-32  Score=269.70  Aligned_cols=245  Identities=18%  Similarity=0.285  Sum_probs=204.6

Q ss_pred             hHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCccccccc
Q 016368           58 CHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRH  130 (390)
Q Consensus        58 ck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~  130 (390)
                      .+.|..+..-|.=..       ...+|++++.+.          +......+++|||.+++|..+++|.. +|..     
T Consensus       310 ~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~----------~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~-----  373 (571)
T KOG4441|consen  310 TNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS----------GSDRLSSVERYDPRTNQWTPVAPMNT-KRSD-----  373 (571)
T ss_pred             cCcEeecCCCCcccccccEEEECCEEEEEccccC----------CCcccceEEEecCCCCceeccCCccC-cccc-----
Confidence            346777666553222       567888876541          11344579999999999999999999 7754     


Q ss_pred             ccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCC
Q 016368          131 PSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG  210 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~  210 (390)
                               +++++++|.+|++||.++.  ...+.+++|||.+++|..+++|+.+|..+++++++++||++||.+..  .
T Consensus       374 ---------~~v~~l~g~iYavGG~dg~--~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~--~  440 (571)
T KOG4441|consen  374 ---------FGVAVLDGKLYAVGGFDGE--KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS--S  440 (571)
T ss_pred             ---------ceeEEECCEEEEEeccccc--cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC--c
Confidence                     2788889999999998754  68889999999999999999999999999999999999999999873  3


Q ss_pred             CccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCCCCCC
Q 016368          211 DVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEGMHAG  288 (390)
Q Consensus       211 ~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~~~~~  288 (390)
                      ..++++++|||.+++    |+.+++|+.+|.   .+++++++++||++||...  ....+++||+++++|+.+.+ |..+
T Consensus       441 ~~l~sve~YDP~t~~----W~~~~~M~~~R~---~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~  512 (571)
T KOG4441|consen  441 NCLNSVECYDPETNT----WTLIAPMNTRRS---GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSP  512 (571)
T ss_pred             cccceEEEEcCCCCc----eeecCCcccccc---cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-Cccc
Confidence            388999999999999    999999999887   6889999999999987632  23457899999999999988 9899


Q ss_pred             CCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccccccceeEEEE
Q 016368          289 WNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAELKGAEKITAA  340 (390)
Q Consensus       289 ~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~  340 (390)
                      +...++++ .+++||++||.++     .+..||+++++|+...++...+...++++.
T Consensus       513 rs~~g~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~  568 (571)
T KOG4441|consen  513 RSAVGVVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI  568 (571)
T ss_pred             cccccEEE-ECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence            99999998 9999999999876     899999999999999984445555555443

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=6.8e-32  Score=262.84  Aligned_cols=205  Identities=15%  Similarity=0.220  Sum_probs=180.0

Q ss_pred             EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      .+..++.+|++||....  ...+.++.|||.+++|..+++|+.+|..+++++++++||++||...      ..+++.||+
T Consensus       267 ~~~~~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp  338 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH  338 (480)
T ss_pred             eEEECCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence            34477888888886443  4567899999999999999999999999999999999999999753      257899999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE  301 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~  301 (390)
                      .+++    |+.+++|+.++.   .+++++++|+||++||........++||+.+++|+.+++ ++.++..+++++ ++|+
T Consensus       339 ~~n~----W~~~~~l~~~r~---~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~-~~~~  409 (480)
T PHA02790        339 GDAA----WVNMPSLLKPRC---NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALV-FGRR  409 (480)
T ss_pred             CCCe----EEECCCCCCCCc---ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEE-ECCE
Confidence            9999    999999998876   688999999999999764334567899999999999999 889999888887 9999


Q ss_pred             EEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368          302 LYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       302 lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~  369 (390)
                      ||++||   .+.+||+++++|+.+++|+.+|..+++++++|+||++||..     ..+.+||+.++   +|++
T Consensus       410 IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~---~W~~  476 (480)
T PHA02790        410 LFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY---SWNI  476 (480)
T ss_pred             EEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC---eEEe
Confidence            999998   57899999999999999999999999999999999998742     47899999988   8974

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=5e-31  Score=247.14  Aligned_cols=243  Identities=16%  Similarity=0.239  Sum_probs=185.0

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..+++||+.+++|..+++++..|+..           ..++.++++++.+|++||....  ...+++++||+.+++|+.+
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~-----------~~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~~t~~W~~~  116 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRIS-----------CLGVRMVAVGTKLYIFGGRDEK--REFSDFYSYDTVKNEWTFL  116 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCc-----------cCceEEEEECCEEEEECCCCCC--CccCcEEEEECCCCEEEEe
Confidence            46999999999999988765324321           0112677888899999987544  4578999999999999999


Q ss_pred             CCC-----CCCCcceEEEEECCEEEEEeccCCCC---CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE
Q 016368          180 PQL-----SIPRRWCAMGSVGGVVYVASGVGAHY---RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF  251 (390)
Q Consensus       180 ~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~  251 (390)
                      +++     |.+|..|++++++++|||+||.....   .....+++++||+++++    |+.++.+......|..++++++
T Consensus       117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~~~~~~~~r~~~~~~~~  192 (341)
T PLN02153        117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPDPGENFEKRGGAGFAVV  192 (341)
T ss_pred             ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCCCCCCCCCCCcceEEEE
Confidence            877     78899999999999999999986421   11235789999999999    9999987644445557888999


Q ss_pred             CCEEEEEcccCC----C------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----------
Q 016368          252 KGNLCMVNLKGN----G------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK----------  309 (390)
Q Consensus       252 ~g~lyv~gg~g~----~------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~----------  309 (390)
                      ++++|++||...    +      ..++++||+++++|++++..  +|.+|..+++++ ++++||++||..          
T Consensus       193 ~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  271 (341)
T PLN02153        193 QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGP  271 (341)
T ss_pred             CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCcccccccc
Confidence            999999986421    1      24678999999999998742  567788888887 999999999952          


Q ss_pred             ----CcEEEEECCCCceEEccc-----ccccccceeE-EEE-CCEEEEEeeCC------ceEEEEEcC
Q 016368          310 ----GRLSKYDADHDWWDEVIE-----LAELKGAEKI-TAA-RGRVCAVCENG------ERIMVVDVL  360 (390)
Q Consensus       310 ----~~v~~yd~~~~~W~~i~~-----~p~~r~~~~~-~~~-~g~l~i~g~~~------~~v~~~d~~  360 (390)
                          +++++||+++++|+++..     +|..+..++. .+. +++|||+|+..      .+++.|++.
T Consensus       272 ~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        272 GTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             ccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence                279999999999999863     3333333333 333 45899998652      367777654

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=1.7e-30  Score=252.48  Aligned_cols=242  Identities=16%  Similarity=0.208  Sum_probs=191.7

Q ss_pred             eEEEEeCCC----CCceeCCCC---CCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCC
Q 016368          101 EFFCFDPIS----STWNPLPAP---PQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQS  173 (390)
Q Consensus       101 ~~~~~d~~~----~~W~~l~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t  173 (390)
                      ..+.+++.+    ++|..++++   |. ||..              +.++.+.+.+|++||.........+++++||+.+
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~-pR~~--------------h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~  202 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPG-LRCS--------------HGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLET  202 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCC-Cccc--------------cEEEEECCEEEEECCcCCCCCCeeCcEEEEECCC
Confidence            456667755    899998763   44 5543              1677778888888886433223447899999999


Q ss_pred             CceecCCCC---CC-CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE
Q 016368          174 NTWFFGPQL---SI-PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV  249 (390)
Q Consensus       174 ~~W~~~~~~---~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~  249 (390)
                      ++|..++++   |. .|..+++++++++|||+||...   ....+++++||+.+++    |++++++...+.+|..++++
T Consensus       203 ~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~h~~~  275 (470)
T PLN02193        203 RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPRSFHSMA  275 (470)
T ss_pred             CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCccceEEE
Confidence            999987653   33 3568889999999999999875   3467899999999999    99999884333334478899


Q ss_pred             EECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----CcEEEEECCCCc
Q 016368          250 GFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK----GRLSKYDADHDW  321 (390)
Q Consensus       250 ~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~----~~v~~yd~~~~~  321 (390)
                      ..+++||++||...  ...+.++||+.+++|+.++..  ++.+|.++.+++ ++++||++||.+    .++++||+++++
T Consensus       276 ~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        276 ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence            99999999997632  235678999999999998752  456777888887 999999999965    389999999999


Q ss_pred             eEEcccc---cccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceE
Q 016368          322 WDEVIEL---AELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWL  368 (390)
Q Consensus       322 W~~i~~~---p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~  368 (390)
                      |+++..+   |.+|..+++++++++|||+|+..              +++++||+.+.   +|+
T Consensus       355 W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~  415 (470)
T PLN02193        355 WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWE  415 (470)
T ss_pred             EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC---EEE
Confidence            9999754   77888899999999999999742              36899999988   898

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=8.8e-31  Score=243.73  Aligned_cols=222  Identities=14%  Similarity=0.199  Sum_probs=177.1

Q ss_pred             eEEEEe-CCC-CCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce--
Q 016368          101 EFFCFD-PIS-STWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW--  176 (390)
Q Consensus       101 ~~~~~d-~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W--  176 (390)
                      .+++|+ +.. .+|..++++|. ++..              .+++++++.+|++||....  ...+++++||+.+++|  
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~-~r~~--------------~~~~~~~~~lyviGG~~~~--~~~~~v~~~d~~~~~w~~  102 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPY-EAAY--------------GASVSVENGIYYIGGSNSS--ERFSSVYRITLDESKEEL  102 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCc-cccc--------------eEEEEECCEEEEEcCCCCC--CCceeEEEEEEcCCceee
Confidence            467664 332 37999999988 6643              1667778999999987543  4578999999999988  


Q ss_pred             --ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC-CCccccceEEEEECC
Q 016368          177 --FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD-GRFSREAVEAVGFKG  253 (390)
Q Consensus       177 --~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g  253 (390)
                        +.++++|.+|..+++++++++|||+||...   ....+++++||+++++    |+++++++. ++.   .++++++++
T Consensus       103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~r~---~~~~~~~~~  172 (323)
T TIGR03548       103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEPRV---QPVCVKLQN  172 (323)
T ss_pred             eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCCCC---cceEEEECC
Confidence              789999999999999999999999999754   3457899999999999    999998874 443   577788999


Q ss_pred             EEEEEcccCC-CCceeEEEeCCCCCeEecCCCCC---CC--CCCceEEEeeCCeEEEEeCCC------------------
Q 016368          254 NLCMVNLKGN-GAKDGAIYNVELDKWKEMPEGMH---AG--WNGPAASTMNEEELYVVNEGK------------------  309 (390)
Q Consensus       254 ~lyv~gg~g~-~~~~~~~yd~~~~~W~~~~~~~~---~~--~~~~~~~~~~~g~lyv~gg~~------------------  309 (390)
                      +||++||... ...+.++||+++++|+.+++ ++   .+  +..++.++..+++||++||.+                  
T Consensus       173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  251 (323)
T TIGR03548       173 ELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD-PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDES  251 (323)
T ss_pred             EEEEEcCCCCccccceEEEecCCCeeEECCC-CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchh
Confidence            9999987532 22457899999999999986 32   22  223333332689999999965                  


Q ss_pred             -------------------CcEEEEECCCCceEEccccc-ccccceeEEEECCEEEEEeeC
Q 016368          310 -------------------GRLSKYDADHDWWDEVIELA-ELKGAEKITAARGRVCAVCEN  350 (390)
Q Consensus       310 -------------------~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~~g~l~i~g~~  350 (390)
                                         +.+++||+.+++|+.++++| ..|..+++++++++||++|+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       252 LKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             hhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence                               35999999999999999887 478888899999999999864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02713 hypothetical protein; Provisional

Probab=99.98  E-value=2.6e-30  Score=255.25  Aligned_cols=197  Identities=12%  Similarity=0.208  Sum_probs=171.2

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ...+++|||.+++|..+++||.+|..+++++++++||++||....  ....+++++||+.++.    |..+++|+.++. 
T Consensus       271 ~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~--~~~~~~v~~Yd~~~n~----W~~~~~m~~~R~-  343 (557)
T PHA02713        271 NPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFN--NPSLNKVYKINIENKI----HVELPPMIKNRC-  343 (557)
T ss_pred             CCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCC--CCccceEEEEECCCCe----EeeCCCCcchhh-
Confidence            357899999999999999999999999999999999999997531  3457899999999999    999999998876 


Q ss_pred             ccceEEEEECCEEEEEcccCC--CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----------
Q 016368          243 REAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----------  309 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----------  309 (390)
                        .+++++++|+||++||...  ...++++||+.+++|+.+++ ++.++..+++++ ++|+||++||.+           
T Consensus       344 --~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        344 --RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             --ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECCEEEEEeCCCccccccccccc
Confidence              6889999999999997632  23568999999999999999 999999998887 999999999964           


Q ss_pred             ------------CcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC------ceEEEEEcCC-CCCcceEe-
Q 016368          310 ------------GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG------ERIMVVDVLA-SPARAWLV-  369 (390)
Q Consensus       310 ------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~------~~v~~~d~~~-~~~~~W~~-  369 (390)
                                  ..+++|||++++|+.+++|+.+|..+++++++|+||++||..      ..+..||+.+ +   +|+. 
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~  496 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELI  496 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEc
Confidence                        258999999999999999999999999999999999998642      2467899987 6   8983 


Q ss_pred             -cCCC
Q 016368          370 -DPPR  373 (390)
Q Consensus       370 -~~p~  373 (390)
                       .+|.
T Consensus       497 ~~m~~  501 (557)
T PHA02713        497 TTTES  501 (557)
T ss_pred             cccCc
Confidence             3543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=1.1e-29  Score=238.75  Aligned_cols=228  Identities=14%  Similarity=0.182  Sum_probs=174.2

Q ss_pred             eeEEEEeC--CCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC----CCCCCCcEEEeCCC
Q 016368          100 MEFFCFDP--ISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF----LPALASPLAFNPQS  173 (390)
Q Consensus       100 ~~~~~~d~--~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~----~~~~~~~~~~dp~t  173 (390)
                      ..+++||+  .+++|..++++|..+|..              +.++++++.+|++||.....    ...++++++|||.+
T Consensus        29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~--------------~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIADFPGGPRNQ--------------AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             CeeEEEECCCCCCCceECCCCCCCCccc--------------ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence            35788885  678999999998425543              16778889999999974321    12467899999999


Q ss_pred             CceecCC-CCCCCCcceEEE-EECCEEEEEeccCCCC-----------C--------------------CCccCeEEEEE
Q 016368          174 NTWFFGP-QLSIPRRWCAMG-SVGGVVYVASGVGAHY-----------R--------------------GDVARSMKKWD  220 (390)
Q Consensus       174 ~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~-----------~--------------------~~~~~~~~~yd  220 (390)
                      ++|+.++ +++.+|..++++ +++++||++||.....           +                    ....+.+++||
T Consensus        95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YD  174 (346)
T TIGR03547        95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYD  174 (346)
T ss_pred             CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEE
Confidence            9999997 456667777666 6899999999985310           0                    00137899999


Q ss_pred             CCCCccccccEEcccCCC-CCccccceEEEEECCEEEEEcccCCCC---ceeEEEe--CCCCCeEecCCCCCCCCC----
Q 016368          221 LKSDREDWKWEKKAQLKD-GRFSREAVEAVGFKGNLCMVNLKGNGA---KDGAIYN--VELDKWKEMPEGMHAGWN----  290 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g~lyv~gg~g~~~---~~~~~yd--~~~~~W~~~~~~~~~~~~----  290 (390)
                      +.+++    |+.+++||. ++.   .+++++++++||++||.....   ...++||  +++++|+.+++ ++.++.    
T Consensus       175 p~t~~----W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~~~  246 (346)
T TIGR03547       175 PSTNQ----WRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSSQE  246 (346)
T ss_pred             CCCCc----eeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-CCCCCCCccc
Confidence            99999    999999985 344   578888999999999752211   2244555  56779999998 766542    


Q ss_pred             ---CceEEEeeCCeEEEEeCCC----------------------CcEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368          291 ---GPAASTMNEEELYVVNEGK----------------------GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVC  345 (390)
Q Consensus       291 ---~~~~~~~~~g~lyv~gg~~----------------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~  345 (390)
                         ++.+++ ++|+||++||..                      ..+.+||+++++|+.+..||.+|..+++++++|+||
T Consensus       247 ~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iy  325 (346)
T TIGR03547       247 GLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVL  325 (346)
T ss_pred             cccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEE
Confidence               333455 899999999953                      147899999999999999999988888888999999


Q ss_pred             EEeeC
Q 016368          346 AVCEN  350 (390)
Q Consensus       346 i~g~~  350 (390)
                      |+|+.
T Consensus       326 v~GG~  330 (346)
T TIGR03547       326 LIGGE  330 (346)
T ss_pred             EEecc
Confidence            99865

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=5.1e-29  Score=242.07  Aligned_cols=241  Identities=15%  Similarity=0.248  Sum_probs=183.4

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..+++||+.+++|..++.....|+..           +..++++++.+.+|++||....  ...+++++||+.+++|+.+
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~-----------~~~~~~v~~~~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l  259 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLS-----------CLGVRMVSIGSTLYVFGGRDAS--RQYNGFYSFDTTTNEWKLL  259 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCc-----------ccceEEEEECCEEEEECCCCCC--CCCccEEEEECCCCEEEEc
Confidence            35999999999999877543212210           0012567778889998887543  4678999999999999999


Q ss_pred             CCC---CCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368          180 PQL---SIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC  256 (390)
Q Consensus       180 ~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly  256 (390)
                      +++   |.+|..|++++++++|||+||...   ....+++++||+.+++    |+.++........|..++++++++++|
T Consensus       260 ~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~R~~~~~~~~~gkiy  332 (470)
T PLN02193        260 TPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGDSFSIRGGAGLEVVQGKVW  332 (470)
T ss_pred             CcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence            888   789999999999999999999875   4456789999999999    999876332223344688889999999


Q ss_pred             EEcccC-CCCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC--------------CcEEEEECCC
Q 016368          257 MVNLKG-NGAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK--------------GRLSKYDADH  319 (390)
Q Consensus       257 v~gg~g-~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~v~~yd~~~  319 (390)
                      ++||.. ....++++||+++++|+.++..  .|.+|..+++++ ++++||++||..              ++++.||+.+
T Consensus       333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t  411 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET  411 (470)
T ss_pred             EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence            998752 2236788999999999998752  467788888887 999999999953              2699999999


Q ss_pred             CceEEcccc------cccccceeE--EEE--CCEEEEEeeCC------ceEEEEEcCC
Q 016368          320 DWWDEVIEL------AELKGAEKI--TAA--RGRVCAVCENG------ERIMVVDVLA  361 (390)
Q Consensus       320 ~~W~~i~~~------p~~r~~~~~--~~~--~g~l~i~g~~~------~~v~~~d~~~  361 (390)
                      ++|+++..+      |.+|..+++  ..+  ++.|+++|+..      +++|.+++.+
T Consensus       412 ~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~  469 (470)
T PLN02193        412 LQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS  469 (470)
T ss_pred             CEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence            999998754      345654432  223  34599998652      3778777653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=3.9e-29  Score=236.94  Aligned_cols=239  Identities=15%  Similarity=0.203  Sum_probs=180.2

Q ss_pred             eEEEEeCC--CCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC----CCCCCCcEEEeCCCC
Q 016368          101 EFFCFDPI--SSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF----LPALASPLAFNPQSN  174 (390)
Q Consensus       101 ~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~----~~~~~~~~~~dp~t~  174 (390)
                      .++.||+.  +++|..++++|..+|..              +.++++++.+|++||.....    ....+++++||+.++
T Consensus        51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~--------------~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         51 SWYKLDLNAPSKGWTKIAAFPGGPREQ--------------AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             eEEEEECCCCCCCeEECCcCCCCCccc--------------ceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            47788876  47899999887535532              16777888999999875311    124678999999999


Q ss_pred             ceecCCC-CCCCCcceEEEE-ECCEEEEEeccCCCC-------------------------------CCCccCeEEEEEC
Q 016368          175 TWFFGPQ-LSIPRRWCAMGS-VGGVVYVASGVGAHY-------------------------------RGDVARSMKKWDL  221 (390)
Q Consensus       175 ~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd~  221 (390)
                      +|+.+++ ++.++.+|++++ .+++||++||.....                               .....+.+++||+
T Consensus       117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~  196 (376)
T PRK14131        117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP  196 (376)
T ss_pred             EEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC
Confidence            9999985 466677777766 799999999975310                               0012478999999


Q ss_pred             CCCccccccEEcccCCC-CCccccceEEEEECCEEEEEcccCC-CCcee----EEEeCCCCCeEecCCCCCCCCCC----
Q 016368          222 KSDREDWKWEKKAQLKD-GRFSREAVEAVGFKGNLCMVNLKGN-GAKDG----AIYNVELDKWKEMPEGMHAGWNG----  291 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~-~~~~r~~~~~~~~~g~lyv~gg~g~-~~~~~----~~yd~~~~~W~~~~~~~~~~~~~----  291 (390)
                      .+++    |+.++++|. ++.   .++++.++++||++||... +....    ..||+++++|+.++. ++.++..    
T Consensus       197 ~t~~----W~~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~~~~  268 (376)
T PRK14131        197 STNQ----WKNAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGGSSQE  268 (376)
T ss_pred             CCCe----eeECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcCCcCC
Confidence            9999    999999885 444   5788889999999997521 11222    246788999999998 7665532    


Q ss_pred             ----ceEEEeeCCeEEEEeCCCC----------------------cEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368          292 ----PAASTMNEEELYVVNEGKG----------------------RLSKYDADHDWWDEVIELAELKGAEKITAARGRVC  345 (390)
Q Consensus       292 ----~~~~~~~~g~lyv~gg~~~----------------------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~  345 (390)
                          +.+++ ++++||++||.+.                      .+.+||+++++|+.+..||.+|..+++++++|+||
T Consensus       269 ~~~~~~a~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy  347 (376)
T PRK14131        269 GVAGAFAGY-SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL  347 (376)
T ss_pred             ccceEecee-ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEE
Confidence                12344 8999999999531                      35689999999999999999998888889999999


Q ss_pred             EEeeCC------ceEEEEEcCCC
Q 016368          346 AVCENG------ERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~~~------~~v~~~d~~~~  362 (390)
                      |+|+..      ++|+.|++.++
T Consensus       348 v~GG~~~~~~~~~~v~~~~~~~~  370 (376)
T PRK14131        348 LIGGETAGGKAVSDVTLLSWDGK  370 (376)
T ss_pred             EEcCCCCCCcEeeeEEEEEEcCC
Confidence            999652      27788887765

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=2.6e-29  Score=244.74  Aligned_cols=187  Identities=18%  Similarity=0.275  Sum_probs=163.9

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..+++|||.+++|..+++++. +|..              +.++++++.+|++||...     .+.+++|||.+++|..+
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~-~r~~--------------~~~v~~~~~iYviGG~~~-----~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNS-PRLY--------------ASGVPANNKLYVVGGLPN-----PTSVERWFHGDAAWVNM  346 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCc-hhhc--------------ceEEEECCEEEEECCcCC-----CCceEEEECCCCeEEEC
Confidence            458899999999999999988 7753              167778899999998632     25789999999999999


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368          180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN  259 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g  259 (390)
                      ++|+.+|..+++++++|+||++||...     ..+.+++|||.+++    |+.+++|+.++.   .+++++++|+||++|
T Consensus       347 ~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~---~~~~~~~~~~IYv~G  414 (480)
T PHA02790        347 PSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHY---KSCALVFGRRLFLVG  414 (480)
T ss_pred             CCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCccc---cceEEEECCEEEEEC
Confidence            999999999999999999999999864     23679999999999    999999998877   578889999999997


Q ss_pred             ccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEcc
Q 016368          260 LKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVI  326 (390)
Q Consensus       260 g~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~  326 (390)
                      |      ..++||+++++|+.+++ ++.+|..+++++ ++|+||++||.+     ..+++||+++++|+...
T Consensus       415 G------~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        415 R------NAEFYCESSNTWTLIDD-PIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             C------ceEEecCCCCcEeEcCC-CCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence            3      26899999999999998 889999999998 999999999964     37999999999998754

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=6.5e-29  Score=246.82  Aligned_cols=207  Identities=18%  Similarity=0.353  Sum_probs=176.7

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..++.||+.+++|..+++++. +|..              +++++.++.+|++||....  ...+++++|||.+++|+.+
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~-~R~~--------------~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIY-PRKN--------------PGVTVFNNRIYVIGGIYNS--ISLNTVESWKPGESKWREE  373 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCc-cccc--------------ceEEEECCEEEEEeCCCCC--EecceEEEEcCCCCceeeC
Confidence            468999999999999999987 6643              1777788899999987633  4678899999999999999


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368          180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN  259 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g  259 (390)
                      +++|.+|..+++++++++||++||....  ....+++++||+.+++    |+.++++|.++.   .++++..++++|++|
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~G  444 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKN--DELLKTVECFSLNTNK----WSKGSPLPISHY---GGCAIYHDGKIYVIG  444 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCC--CcccceEEEEeCCCCe----eeecCCCCcccc---CceEEEECCEEEEEC
Confidence            9999999999999999999999997542  3457899999999999    999999998776   688889999999999


Q ss_pred             ccCCC-----CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEccccc
Q 016368          260 LKGNG-----AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       260 g~g~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~~~p  329 (390)
                      |....     ....++||+++++|+.++. ++.++..+++++ .+|+||++||..     +.+++||+++++|..++.+|
T Consensus       445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             CccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence            76321     2347899999999999998 778888888887 899999999964     38999999999999999877


Q ss_pred             ccccc
Q 016368          330 ELKGA  334 (390)
Q Consensus       330 ~~r~~  334 (390)
                      +....
T Consensus       523 ~~~~~  527 (534)
T PHA03098        523 KVIGS  527 (534)
T ss_pred             ccccc
Confidence            65443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=4.8e-28  Score=227.69  Aligned_cols=216  Identities=16%  Similarity=0.246  Sum_probs=164.8

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeC--CCCceecCCCCC-CCCcceEEEEECCEEEEEeccCCCC---CCCccC
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNP--QSNTWFFGPQLS-IPRRWCAMGSVGGVVYVASGVGAHY---RGDVAR  214 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp--~t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~  214 (390)
                      .++++++.+|++||..      .+++++||+  .+++|..+++|| .+|..+++++++++|||+||.....   .....+
T Consensus        12 ~~~~~~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~   85 (346)
T TIGR03547        12 TGAIIGDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFD   85 (346)
T ss_pred             eEEEECCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecc
Confidence            5557788888888752      257899996  678999999998 5899999999999999999985421   012467


Q ss_pred             eEEEEECCCCccccccEEccc-CCCCCccccceEEE-EECCEEEEEcccCCC----------------------------
Q 016368          215 SMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAV-GFKGNLCMVNLKGNG----------------------------  264 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~----------------------------  264 (390)
                      ++++||+.+++    |+.++. ++..+.   +++++ +++++||++||....                            
T Consensus        86 ~v~~Yd~~~~~----W~~~~~~~p~~~~---~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T TIGR03547        86 DVYRYDPKKNS----WQKLDTRSPVGLL---GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS  158 (346)
T ss_pred             cEEEEECCCCE----EecCCCCCCCccc---ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence            89999999999    999973 444443   45555 689999999976311                            


Q ss_pred             --------CceeEEEeCCCCCeEecCCCCCC-CCCCceEEEeeCCeEEEEeCCCC------cEEEEE--CCCCceEEccc
Q 016368          265 --------AKDGAIYNVELDKWKEMPEGMHA-GWNGPAASTMNEEELYVVNEGKG------RLSKYD--ADHDWWDEVIE  327 (390)
Q Consensus       265 --------~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd--~~~~~W~~i~~  327 (390)
                              ...+++||+.+++|+.+++ ++. ++..+++++ ++++||++||...      .++.||  +++++|++++.
T Consensus       159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~  236 (346)
T TIGR03547       159 QPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVH-KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP  236 (346)
T ss_pred             CChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEE-ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence                    1568899999999999998 765 577777777 9999999999532      455565  56779999999


Q ss_pred             cccccc-------ceeEEEECCEEEEEeeCC----------------------ceEEEEEcCCCCCcceEe--cCCCC
Q 016368          328 LAELKG-------AEKITAARGRVCAVCENG----------------------ERIMVVDVLASPARAWLV--DPPRG  374 (390)
Q Consensus       328 ~p~~r~-------~~~~~~~~g~l~i~g~~~----------------------~~v~~~d~~~~~~~~W~~--~~p~g  374 (390)
                      ||.+|.       .+.+++++|+|||+|+..                      ..+.+||+.+.   +|+.  .+|..
T Consensus       237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~  311 (346)
T TIGR03547       237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQG  311 (346)
T ss_pred             CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCCCCC
Confidence            987642       344677899999998742                      14678888766   8983  35543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=5e-28  Score=225.25  Aligned_cols=214  Identities=17%  Similarity=0.208  Sum_probs=169.9

Q ss_pred             eEEeecCeEEEEEeecCCC--------CCCCCCcEEEe-CCC-CceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCC
Q 016368          141 QSLGVRNNLVLIAATTPHF--------LPALASPLAFN-PQS-NTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG  210 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~--------~~~~~~~~~~d-p~t-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~  210 (390)
                      .++++++.||++||.+...        ....+++++|+ +.. .+|..+++||.+|.++++++++++||++||...   .
T Consensus         8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~---~   84 (323)
T TIGR03548         8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS---S   84 (323)
T ss_pred             eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC---C
Confidence            5677888999999976532        12345788885 432 379999999999998989999999999999875   4


Q ss_pred             CccCeEEEEECCCCcccccc----EEcccCCCCCccccceEEEEECCEEEEEcccC--CCCceeEEEeCCCCCeEecCCC
Q 016368          211 DVARSMKKWDLKSDREDWKW----EKKAQLKDGRFSREAVEAVGFKGNLCMVNLKG--NGAKDGAIYNVELDKWKEMPEG  284 (390)
Q Consensus       211 ~~~~~~~~yd~~t~~~~~~W----~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g--~~~~~~~~yd~~~~~W~~~~~~  284 (390)
                      ...+++++||+.++.    |    +.++++|.++.   .+++++++++||++||..  ....+.++||+.+++|+++++ 
T Consensus        85 ~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~---~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-  156 (323)
T TIGR03548        85 ERFSSVYRITLDESK----EELICETIGNLPFTFE---NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-  156 (323)
T ss_pred             CCceeEEEEEEcCCc----eeeeeeEcCCCCcCcc---CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-
Confidence            457899999999998    7    78888988766   588889999999999752  224578899999999999987 


Q ss_pred             CC-CCCCCceEEEeeCCeEEEEeCCCC----cEEEEECCCCceEEccccc---ccc--c-ceeEEEECCEEEEEeeCC--
Q 016368          285 MH-AGWNGPAASTMNEEELYVVNEGKG----RLSKYDADHDWWDEVIELA---ELK--G-AEKITAARGRVCAVCENG--  351 (390)
Q Consensus       285 ~~-~~~~~~~~~~~~~g~lyv~gg~~~----~v~~yd~~~~~W~~i~~~p---~~r--~-~~~~~~~~g~l~i~g~~~--  351 (390)
                      ++ .+|..+.+++ ++++||++||.++    ++++||+++++|++++.++   .++  . ..++++.+++|||+|+..  
T Consensus       157 ~p~~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~  235 (323)
T TIGR03548       157 FPGEPRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKD  235 (323)
T ss_pred             CCCCCCCcceEEE-ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHH
Confidence            55 4677777776 9999999999754    6789999999999998764   222  2 233445589999998653  


Q ss_pred             -----------------------------------ceEEEEEcCCCCCcceEe
Q 016368          352 -----------------------------------ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       352 -----------------------------------~~v~~~d~~~~~~~~W~~  369 (390)
                                                         +++++||+.+.   +|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~  285 (323)
T TIGR03548       236 VYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKS  285 (323)
T ss_pred             HHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeE
Confidence                                               46999999998   8984

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=1e-28  Score=208.55  Aligned_cols=244  Identities=12%  Similarity=0.215  Sum_probs=196.9

Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW  176 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W  176 (390)
                      .....++++|..+-+|..+|+--......  ...|.....+|+...+...+++|+.||.+... ...|.++.|||.+++|
T Consensus        41 ~~piDVH~lNa~~~RWtk~pp~~~ka~i~--~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e-gaCN~Ly~fDp~t~~W  117 (392)
T KOG4693|consen   41 KDPIDVHVLNAENYRWTKMPPGITKATIE--SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE-GACNLLYEFDPETNVW  117 (392)
T ss_pred             CCcceeEEeeccceeEEecCccccccccc--CCCCccchhhcCceEEEEcceEEEEcCccCcc-cccceeeeeccccccc
Confidence            45578999999999999998621101111  11223344677778999999999999987643 6788999999999999


Q ss_pred             ecC---CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC
Q 016368          177 FFG---PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG  253 (390)
Q Consensus       177 ~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g  253 (390)
                      .+.   .-+|.+|.+|+++++++.+|+|||+.+. .+...+++.++|..|.+    |+.+.....+..-|..|+++++++
T Consensus       118 ~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg~PprwRDFH~a~~~~~  192 (392)
T KOG4693|consen  118 KKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKGDPPRWRDFHTASVIDG  192 (392)
T ss_pred             cccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccCCCchhhhhhhhhhccc
Confidence            875   3568899999999999999999999753 24577899999999999    999987766655566799999999


Q ss_pred             EEEEEcccCCC-----------CceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCCC-------cEE
Q 016368          254 NLCMVNLKGNG-----------AKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGKG-------RLS  313 (390)
Q Consensus       254 ~lyv~gg~g~~-----------~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~  313 (390)
                      .+||+||++..           ...+..+|+.++.|...+..  .|.+|..+++.+ .||+||+|||..+       ++|
T Consensus       193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy  271 (392)
T KOG4693|consen  193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLY  271 (392)
T ss_pred             eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE-EcceEEEecccchhhhhhhccee
Confidence            99999987331           23445899999999987642  578888999998 9999999999776       899


Q ss_pred             EEECCCCceEEcc---cccccccceeEEEECCEEEEEee
Q 016368          314 KYDADHDWWDEVI---ELAELKGAEKITAARGRVCAVCE  349 (390)
Q Consensus       314 ~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~l~i~g~  349 (390)
                      .|||.+..|+.|.   +-|..|...++++.++++|++|+
T Consensus       272 ~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG  310 (392)
T KOG4693|consen  272 CFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG  310 (392)
T ss_pred             ecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence            9999999999986   45667888888999999999984

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.95  E-value=3.3e-27  Score=199.53  Aligned_cols=225  Identities=13%  Similarity=0.144  Sum_probs=180.8

Q ss_pred             eEEeecCeEEEEEeecCCCC---CCCCCcEEEeCCCCceecCCC-------------CCCCCcceEEEEECCEEEEEecc
Q 016368          141 QSLGVRNNLVLIAATTPHFL---PALASPLAFNPQSNTWFFGPQ-------------LSIPRRWCAMGSVGGVVYVASGV  204 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~---~~~~~~~~~dp~t~~W~~~~~-------------~~~~r~~~~~~~~~~~lyv~GG~  204 (390)
                      +++++...+|-+||++.+..   ...-++.++|..+-+|.++|+             .|..|++|+.+.+++++|+.||.
T Consensus        18 AavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGR   97 (392)
T KOG4693|consen   18 AAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGR   97 (392)
T ss_pred             eeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCc
Confidence            88899999999999875432   233468999999999999876             24569999999999999999999


Q ss_pred             CCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc----CCCCceeEEEeCCCCCeEe
Q 016368          205 GAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK----GNGAKDGAIYNVELDKWKE  280 (390)
Q Consensus       205 ~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~----g~~~~~~~~yd~~~~~W~~  280 (390)
                      ++.  ....+.++.||++++.    |.+..-...-+..|.+|++++.++.+||+||+    .....++.++|..+.+|++
T Consensus        98 ND~--egaCN~Ly~fDp~t~~----W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~  171 (392)
T KOG4693|consen   98 NDD--EGACNLLYEFDPETNV----WKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE  171 (392)
T ss_pred             cCc--ccccceeeeecccccc----ccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence            874  4567889999999999    99765433323334489999999999999987    2346778899999999999


Q ss_pred             cCCC--CCCCCCCceEEEeeCCeEEEEeCCCC--------------cEEEEECCCCceEEccc---ccccccceeEEEEC
Q 016368          281 MPEG--MHAGWNGPAASTMNEEELYVVNEGKG--------------RLSKYDADHDWWDEVIE---LAELKGAEKITAAR  341 (390)
Q Consensus       281 ~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~--------------~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~  341 (390)
                      +...  +|.-|-.+++++ +++.||+|||...              .+..+|..|..|...++   .|..|.+|++.+.+
T Consensus       172 ~~Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn  250 (392)
T KOG4693|consen  172 MHTKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN  250 (392)
T ss_pred             hhccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence            8752  333345677776 9999999999432              78899999999998864   45668899999999


Q ss_pred             CEEEEEeeCC-------ceEEEEEcCCCCCcceEecCCCCe
Q 016368          342 GRVCAVCENG-------ERIMVVDVLASPARAWLVDPPRGF  375 (390)
Q Consensus       342 g~l~i~g~~~-------~~v~~~d~~~~~~~~W~~~~p~g~  375 (390)
                      |++|++|+-+       ++++.+|+.+.   .|.++.+.|.
T Consensus       251 g~~Y~FGGYng~ln~HfndLy~FdP~t~---~W~~I~~~Gk  288 (392)
T KOG4693|consen  251 GKMYMFGGYNGTLNVHFNDLYCFDPKTS---MWSVISVRGK  288 (392)
T ss_pred             ceEEEecccchhhhhhhcceeecccccc---hheeeeccCC
Confidence            9999998653       48999999998   8998766554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=3.7e-26  Score=216.66  Aligned_cols=225  Identities=18%  Similarity=0.256  Sum_probs=168.6

Q ss_pred             CceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCC--CCceecCCCCC-CCCc
Q 016368          111 TWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQ--SNTWFFGPQLS-IPRR  187 (390)
Q Consensus       111 ~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~--t~~W~~~~~~~-~~r~  187 (390)
                      .+..++++|. ++..              ..++.+++.+|++||..      .+.+++||+.  +++|..++++| .+|.
T Consensus        18 ~~~~l~~lP~-~~~~--------------~~~~~~~~~iyv~gG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~r~   76 (376)
T PRK14131         18 NAEQLPDLPV-PFKN--------------GTGAIDNNTVYVGLGSA------GTSWYKLDLNAPSKGWTKIAAFPGGPRE   76 (376)
T ss_pred             ecccCCCCCc-CccC--------------CeEEEECCEEEEEeCCC------CCeEEEEECCCCCCCeEECCcCCCCCcc
Confidence            3667788887 6532              15666778888887752      2458899986  47999999997 5899


Q ss_pred             ceEEEEECCEEEEEeccCCC-C--CCCccCeEEEEECCCCccccccEEcccC-CCCCccccceEEEE-ECCEEEEEcccC
Q 016368          188 WCAMGSVGGVVYVASGVGAH-Y--RGDVARSMKKWDLKSDREDWKWEKKAQL-KDGRFSREAVEAVG-FKGNLCMVNLKG  262 (390)
Q Consensus       188 ~~~~~~~~~~lyv~GG~~~~-~--~~~~~~~~~~yd~~t~~~~~~W~~~~~~-~~~~~~r~~~~~~~-~~g~lyv~gg~g  262 (390)
                      .+++++++++|||+||.... .  .....+++++||+.+++    |+.++.+ |..+.   ++++++ .+++||++||..
T Consensus        77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~~---~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGLA---GHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCccc---ceEEEEeeCCEEEEECCCC
Confidence            99999999999999998641 0  01346789999999999    9999863 44433   466665 899999999753


Q ss_pred             CC------------------------------------CceeEEEeCCCCCeEecCCCCCC-CCCCceEEEeeCCeEEEE
Q 016368          263 NG------------------------------------AKDGAIYNVELDKWKEMPEGMHA-GWNGPAASTMNEEELYVV  305 (390)
Q Consensus       263 ~~------------------------------------~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~g~lyv~  305 (390)
                      ..                                    ..++++||+.+++|+.+++ +|. ++..+++++ ++++||++
T Consensus       150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~-~~~~iYv~  227 (376)
T PRK14131        150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVI-KGNKLWLI  227 (376)
T ss_pred             HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CCCCCCCcceEEE-ECCEEEEE
Confidence            20                                    2467899999999999988 665 677777776 89999999


Q ss_pred             eCCCC------cE--EEEECCCCceEEcccccccccc--------eeEEEECCEEEEEeeCC------------------
Q 016368          306 NEGKG------RL--SKYDADHDWWDEVIELAELKGA--------EKITAARGRVCAVCENG------------------  351 (390)
Q Consensus       306 gg~~~------~v--~~yd~~~~~W~~i~~~p~~r~~--------~~~~~~~g~l~i~g~~~------------------  351 (390)
                      ||...      .+  +.||+++++|+++..||.+|..        +.+++++++|||+|+.+                  
T Consensus       228 GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  307 (376)
T PRK14131        228 NGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEG  307 (376)
T ss_pred             eeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccC
Confidence            99421      33  4567889999999999876531        22466799999998642                  


Q ss_pred             ----ceEEEEEcCCCCCcceE
Q 016368          352 ----ERIMVVDVLASPARAWL  368 (390)
Q Consensus       352 ----~~v~~~d~~~~~~~~W~  368 (390)
                          ..+.+||+.+.   +|+
T Consensus       308 ~~~~~~~e~yd~~~~---~W~  325 (376)
T PRK14131        308 LKKSWSDEIYALVNG---KWQ  325 (376)
T ss_pred             CcceeehheEEecCC---ccc
Confidence                13457888876   898

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.90  E-value=8e-22  Score=191.36  Aligned_cols=219  Identities=16%  Similarity=0.227  Sum_probs=179.3

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC---CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP---QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK  217 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~  217 (390)
                      .++...+.+|++||..........+++++|..+..|....   ..|.+|.+|+++.++.+||+|||.+..  ....++++
T Consensus        65 s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~--~~~~~~l~  142 (482)
T KOG0379|consen   65 SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK--YRNLNELH  142 (482)
T ss_pred             ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC--CCChhheE
Confidence            6666688899988876553222226999999999998754   456899999999999999999999852  44578999


Q ss_pred             EEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC---CCceeEEEeCCCCCeEecCC--CCCCCCCCc
Q 016368          218 KWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN---GAKDGAIYNVELDKWKEMPE--GMHAGWNGP  292 (390)
Q Consensus       218 ~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~---~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~  292 (390)
                      .||+.|++    |+.+......+.+|.+|++++++.++||+||.+.   ...+.++||+++.+|+++..  ..|.+|.+|
T Consensus       143 ~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH  218 (482)
T KOG0379|consen  143 SLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGH  218 (482)
T ss_pred             eccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCc
Confidence            99999999    9998876665556668999999999999998743   24678899999999999763  267789999


Q ss_pred             eEEEeeCCeEEEEeCCC-C-----cEEEEECCCCceEEcc---cccccccceeEEEECCEEEEEeeCCc-------eEEE
Q 016368          293 AASTMNEEELYVVNEGK-G-----RLSKYDADHDWWDEVI---ELAELKGAEKITAARGRVCAVCENGE-------RIMV  356 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~-~-----~v~~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~l~i~g~~~~-------~v~~  356 (390)
                      ++++ .+++++++||.. +     +++.+|..+.+|+++.   ..|.+|..|.+++.+..++|+|++..       +++.
T Consensus       219 ~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~  297 (482)
T KOG0379|consen  219 AMVV-VGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYG  297 (482)
T ss_pred             eEEE-ECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccc
Confidence            9998 999999999966 3     9999999999999765   56788999999999999999986533       5677


Q ss_pred             EEcCCCCCcceEe
Q 016368          357 VDVLASPARAWLV  369 (390)
Q Consensus       357 ~d~~~~~~~~W~~  369 (390)
                      +|+.+.   .|..
T Consensus       298 l~~~~~---~w~~  307 (482)
T KOG0379|consen  298 LDLETL---VWSK  307 (482)
T ss_pred             cccccc---ceee
Confidence            787755   7873

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=176.12  Aligned_cols=209  Identities=19%  Similarity=0.310  Sum_probs=171.0

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      ++++||..+..|.........|.            .+++..++++.+.||++||.... ....++++.||+.|++|..+.
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~------------~r~g~~~~~~~~~l~lfGG~~~~-~~~~~~l~~~d~~t~~W~~l~  155 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPS------------PRYGHSLSAVGDKLYLFGGTDKK-YRNLNELHSLDLSTRTWSLLS  155 (482)
T ss_pred             eeEEeecCCcccccccccCCCCC------------cccceeEEEECCeEEEEccccCC-CCChhheEeccCCCCcEEEec
Confidence            69999999999988654333221            12223777788899999988752 356899999999999998865


Q ss_pred             C---CCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368          181 Q---LSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM  257 (390)
Q Consensus       181 ~---~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv  257 (390)
                      +   +|.+|.+|++++++.+||||||....  ....+++++||+.+.+    |.++......+.+|.+|++++.++++++
T Consensus       156 ~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~----W~~~~~~g~~P~pR~gH~~~~~~~~~~v  229 (482)
T KOG0379|consen  156 PTGDPPPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETST----WSELDTQGEAPSPRYGHAMVVVGNKLLV  229 (482)
T ss_pred             CcCCCCCCcccceEEEECCEEEEECCccCc--ccceeeeeeecccccc----ceecccCCCCCCCCCCceEEEECCeEEE
Confidence            4   57899999999999999999999874  4489999999999999    9999877666667779999999999999


Q ss_pred             EcccCC---CCceeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCCC-------cEEEEECCCCceEEc
Q 016368          258 VNLKGN---GAKDGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGKG-------RLSKYDADHDWWDEV  325 (390)
Q Consensus       258 ~gg~g~---~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~~yd~~~~~W~~i  325 (390)
                      +||...   ...+.+.+|+.+.+|..+..  ..|.+|..+..++ .+.+++++||...       +++.||.++..|.++
T Consensus       230 ~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~  308 (482)
T KOG0379|consen  230 FGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV  308 (482)
T ss_pred             EeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE-ECCEEEEEcCCcccccccccccccccccccceeee
Confidence            987642   34678899999999997653  3788999999997 9999999999533       689999999999998


Q ss_pred             cccc
Q 016368          326 IELA  329 (390)
Q Consensus       326 ~~~p  329 (390)
                      ....
T Consensus       309 ~~~~  312 (482)
T KOG0379|consen  309 ESVG  312 (482)
T ss_pred             eccc
Confidence            7555

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.85  E-value=4.7e-20  Score=165.07  Aligned_cols=215  Identities=15%  Similarity=0.193  Sum_probs=166.2

Q ss_pred             cCeEEEEEeecCC--CCCCCCCcEEEeCCCCceecC--CCCCCCCcceEEEEEC-CEEEEEeccCCCCCCC---ccCeEE
Q 016368          146 RNNLVLIAATTPH--FLPALASPLAFNPQSNTWFFG--PQLSIPRRWCAMGSVG-GVVYVASGVGAHYRGD---VARSMK  217 (390)
Q Consensus       146 ~~~l~~~gG~~~~--~~~~~~~~~~~dp~t~~W~~~--~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~---~~~~~~  217 (390)
                      .+.|+++||...+  .....+++++||..+++|+.+  |..|.||+.|.++++. +.+|+|||.-....+.   -..++|
T Consensus        78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W  157 (521)
T KOG1230|consen   78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW  157 (521)
T ss_pred             cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence            3478888875433  224668999999999999985  5667899999888885 8999999985543221   346899


Q ss_pred             EEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC------CCceeEEEeCCCCCeEecCCC--CCCCC
Q 016368          218 KWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN------GAKDGAIYNVELDKWKEMPEG--MHAGW  289 (390)
Q Consensus       218 ~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~------~~~~~~~yd~~~~~W~~~~~~--~~~~~  289 (390)
                      +||..+++    |+++.... .+.+|.+|-++....+|+++||.-.      .-+++++||+.+-+|+++.+.  .|.+|
T Consensus       158 ~fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR  232 (521)
T KOG1230|consen  158 LFDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR  232 (521)
T ss_pred             eeeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence            99999999    99987643 2234458999999999999987511      125678999999999998764  47889


Q ss_pred             CCceEEEeeCCeEEEEeCCCC--------------cEEEEECCC-----CceEEccc---ccccccceeEEEE-CCEEEE
Q 016368          290 NGPAASTMNEEELYVVNEGKG--------------RLSKYDADH-----DWWDEVIE---LAELKGAEKITAA-RGRVCA  346 (390)
Q Consensus       290 ~~~~~~~~~~g~lyv~gg~~~--------------~v~~yd~~~-----~~W~~i~~---~p~~r~~~~~~~~-~g~l~i  346 (390)
                      .++++.+...|.|||.||...              ++|..+++.     -.|.++.+   -|.+|.++++++. +++-+.
T Consensus       233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~  312 (521)
T KOG1230|consen  233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF  312 (521)
T ss_pred             CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence            999988845999999999542              899999988     56888764   3567999998887 668888


Q ss_pred             EeeC--------------CceEEEEEcCCCCCcceE
Q 016368          347 VCEN--------------GERIMVVDVLASPARAWL  368 (390)
Q Consensus       347 ~g~~--------------~~~v~~~d~~~~~~~~W~  368 (390)
                      +|+.              .++++.||+..+   .|.
T Consensus       313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n---rW~  345 (521)
T KOG1230|consen  313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRN---RWS  345 (521)
T ss_pred             ecceecccccchhhhhhhhhhhhheecccc---hhh
Confidence            8843              247889998776   675

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=9.8e-20  Score=166.87  Aligned_cols=273  Identities=13%  Similarity=0.125  Sum_probs=191.2

Q ss_pred             hHHHhhcCCCCCC-----------cccEEEEeecCCCCCCCCCCcccCCC-ceeEEEEeCCCCCceeCC---CCCCCCCc
Q 016368           60 SWRRLLYSPYFPP-----------FFSLYALLFNNNKPSHNNNNYYSFNS-SMEFFCFDPISSTWNPLP---APPQNPPL  124 (390)
Q Consensus        60 ~W~~l~~s~~f~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~W~~l~---~~p~~~~~  124 (390)
                      |||++..+-.-..           .+.+.+|++++             ++ ...+++||..+++|..-.   ..|. +..
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-------------EGiiDELHvYNTatnqWf~PavrGDiPp-gcA   83 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-------------EGIIDELHVYNTATNQWFAPAVRGDIPP-GCA   83 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCc-------------ccchhhhhhhccccceeecchhcCCCCC-chh
Confidence            7888877633222           34455555544             33 345999999999997632   3333 111


Q ss_pred             ccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCC-------CCCCCcceEEEEECCE
Q 016368          125 RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQ-------LSIPRRWCAMGSVGGV  197 (390)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~-------~~~~r~~~~~~~~~~~  197 (390)
                      .              +.+++.+.++|++||...-+ .+.|+++..-...=.|+++.+       +|.||-+|+...+++|
T Consensus        84 A--------------~GfvcdGtrilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK  148 (830)
T KOG4152|consen   84 A--------------FGFVCDGTRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK  148 (830)
T ss_pred             h--------------cceEecCceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccE
Confidence            1              15566667888888875433 778888766655567788743       4678999999999999


Q ss_pred             EEEEeccCCCCC------CCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE------CCEEEEEccc-CCC
Q 016368          198 VYVASGVGAHYR------GDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF------KGNLCMVNLK-GNG  264 (390)
Q Consensus       198 lyv~GG~~~~~~------~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~------~g~lyv~gg~-g~~  264 (390)
                      .|+|||.....+      ..+++++++.++.-+..-..|...-.......+|..|.++.+      ..||||+||- |..
T Consensus       149 cYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R  228 (830)
T KOG4152|consen  149 CYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR  228 (830)
T ss_pred             eEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc
Confidence            999999754321      246788888888755433448765433333334446888887      3479999864 445


Q ss_pred             CceeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCC-------------------CcEEEEECCCCceE
Q 016368          265 AKDGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGK-------------------GRLSKYDADHDWWD  323 (390)
Q Consensus       265 ~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~-------------------~~v~~yd~~~~~W~  323 (390)
                      ..+.+.+|+++-+|.+..-  ..|.+|.-|++.+ ++++||||||+-                   ..+-.+|..++.|.
T Consensus       229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~  307 (830)
T KOG4152|consen  229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE  307 (830)
T ss_pred             ccceeEEecceeecccccccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence            5678899999999998653  2567888888888 999999999941                   15667899999999


Q ss_pred             Ecc-------cccccccceeEEEECCEEEEEeeCC------------ceEEEEEcCCC
Q 016368          324 EVI-------ELAELKGAEKITAARGRVCAVCENG------------ERIMVVDVLAS  362 (390)
Q Consensus       324 ~i~-------~~p~~r~~~~~~~~~g~l~i~g~~~------------~~v~~~d~~~~  362 (390)
                      .+.       .+|..|.+|+.++++.++||-++++            .++|.+|...+
T Consensus       308 tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP  365 (830)
T KOG4152|consen  308 TLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP  365 (830)
T ss_pred             eeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence            874       4677888999999999999987552            25666665554

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.84  E-value=7.5e-20  Score=163.80  Aligned_cols=265  Identities=14%  Similarity=0.126  Sum_probs=182.5

Q ss_pred             CCCCCCcHHHHHHHHhcCC---c------hhhHhhhHhHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCCceeE
Q 016368           32 LLLPGLPNHLADRCLSSLP---P------ALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEF  102 (390)
Q Consensus        32 ~~~~~LP~dl~~~iL~rLP---l------~~~r~Vck~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (390)
                      .+.+.|-++.+.+|+..|.   .      .--.-.||.=-+|...|.   ..-|+++++.-    ++...+   --=+.+
T Consensus        31 kl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPe---keELilfGGEf----~ngqkT---~vYndL  100 (521)
T KOG1230|consen   31 KLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPE---KEELILFGGEF----YNGQKT---HVYNDL  100 (521)
T ss_pred             hcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccC---cceeEEeccee----ecceeE---EEeeee
Confidence            3445676777888888776   0      001122333334444444   23445444322    000000   011358


Q ss_pred             EEEeCCCCCceeCC--CCCCCCCcccccccccccccCCCceEEeec-CeEEEEEeecCC----CCCCCCCcEEEeCCCCc
Q 016368          103 FCFDPISSTWNPLP--APPQNPPLRLLYRHPSFLSRKLPVQSLGVR-NNLVLIAATTPH----FLPALASPLAFNPQSNT  175 (390)
Q Consensus       103 ~~~d~~~~~W~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gG~~~~----~~~~~~~~~~~dp~t~~  175 (390)
                      +.||..+++|..+.  ..|. ||..+              ++|++- +.++++||....    ......++|.||..+++
T Consensus       101 y~Yn~k~~eWkk~~spn~P~-pRssh--------------q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk  165 (521)
T KOG1230|consen  101 YSYNTKKNEWKKVVSPNAPP-PRSSH--------------QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK  165 (521)
T ss_pred             eEEeccccceeEeccCCCcC-CCccc--------------eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch
Confidence            99999999999874  4455 56431              666665 556666664321    12466789999999999


Q ss_pred             eecCC--CCCCCCcceEEEEECCEEEEEeccCCCC-CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-
Q 016368          176 WFFGP--QLSIPRRWCAMGSVGGVVYVASGVGAHY-RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-  251 (390)
Q Consensus       176 W~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-  251 (390)
                      |.++.  .-|.+|++|.+++...+|++|||+.+.. +..+.+++++||+.|-+    |.++.+....+.+|.++..++. 
T Consensus       166 weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtp  241 (521)
T KOG1230|consen  166 WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTP  241 (521)
T ss_pred             heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecC
Confidence            99874  4678999999999999999999986642 23578999999999999    9999875444455567887777 


Q ss_pred             CCEEEEEcccCC-----------CCceeEEEeCCC-----CCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCC----
Q 016368          252 KGNLCMVNLKGN-----------GAKDGAIYNVEL-----DKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGK----  309 (390)
Q Consensus       252 ~g~lyv~gg~g~-----------~~~~~~~yd~~~-----~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~----  309 (390)
                      +|.||+.|||..           --.+.+.++++.     -.|..+.+.  .|.+|.+.++++..+++-+.|||.-    
T Consensus       242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee  321 (521)
T KOG1230|consen  242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE  321 (521)
T ss_pred             CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc
Confidence            999999998721           123456778877     478887653  5788888888875788999999931    


Q ss_pred             ----------CcEEEEECCCCceEEc
Q 016368          310 ----------GRLSKYDADHDWWDEV  325 (390)
Q Consensus       310 ----------~~v~~yd~~~~~W~~i  325 (390)
                                ++++.||...+.|.+.
T Consensus       322 eeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  322 EEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             cchhhhhhhhhhhhheecccchhhHh
Confidence                      2899999999999875

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.74  E-value=5.8e-17  Score=148.88  Aligned_cols=198  Identities=13%  Similarity=0.202  Sum_probs=146.3

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC---CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG---PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK  217 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~  217 (390)
                      .++++..-++++||++.+   ..+.+.+||..+++|..-   .+.|.+-+.|+.+..+.+||+|||.-+-  +.+.+++ 
T Consensus        37 RAVaikELiviFGGGNEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEY--GkYsNdL-  110 (830)
T KOG4152|consen   37 RAVAIKELIVIFGGGNEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEY--GKYSNDL-  110 (830)
T ss_pred             hheeeeeeEEEecCCccc---chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeee--ccccchH-
Confidence            667777777777777654   578999999999999763   4567777778888889999999998653  4454444 


Q ss_pred             EEECCCCccccccEEcccC----CCCCccccceEEEEECCEEEEEcccCCCC-----------ceeEEEeCCCC----Ce
Q 016368          218 KWDLKSDREDWKWEKKAQL----KDGRFSREAVEAVGFKGNLCMVNLKGNGA-----------KDGAIYNVELD----KW  278 (390)
Q Consensus       218 ~yd~~t~~~~~~W~~~~~~----~~~~~~r~~~~~~~~~g~lyv~gg~g~~~-----------~~~~~yd~~~~----~W  278 (390)
                       |.++...  |.|+++.+-    ..+.++|-+|+.+.+++|.|+|||-.++.           .+.++.++.-+    .|
T Consensus       111 -YELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W  187 (830)
T KOG4152|consen  111 -YELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAW  187 (830)
T ss_pred             -HHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEE
Confidence             5555444  558877542    23456667899999999999999753321           23345555432    58


Q ss_pred             EecCC--CCCCCCCCceEEEee------CCeEEEEeCCCC----cEEEEECCCCceEEcc---cccccccceeEEEECCE
Q 016368          279 KEMPE--GMHAGWNGPAASTMN------EEELYVVNEGKG----RLSKYDADHDWWDEVI---ELAELKGAEKITAARGR  343 (390)
Q Consensus       279 ~~~~~--~~~~~~~~~~~~~~~------~g~lyv~gg~~~----~v~~yd~~~~~W~~i~---~~p~~r~~~~~~~~~g~  343 (390)
                      .....  ..|.+|..|.++. +      ..+|||+||..|    ++|..|.++..|.+..   ..|.+|.-|+...++++
T Consensus       188 ~ip~t~Gv~P~pRESHTAVi-Y~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK  266 (830)
T KOG4152|consen  188 DIPITYGVLPPPRESHTAVI-YTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK  266 (830)
T ss_pred             ecccccCCCCCCcccceeEE-EEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecce
Confidence            76432  2667788887776 3      458999999776    9999999999999875   45667889999999999


Q ss_pred             EEEEe
Q 016368          344 VCAVC  348 (390)
Q Consensus       344 l~i~g  348 (390)
                      +||+|
T Consensus       267 MyvfG  271 (830)
T KOG4152|consen  267 MYVFG  271 (830)
T ss_pred             eEEec
Confidence            99998

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.63  E-value=3.4e-14  Score=126.12  Aligned_cols=228  Identities=14%  Similarity=0.185  Sum_probs=158.9

Q ss_pred             ceeEEEEeCCC--CCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC---CCCCCCcEEEeCCC
Q 016368           99 SMEFFCFDPIS--STWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF---LPALASPLAFNPQS  173 (390)
Q Consensus        99 ~~~~~~~d~~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~---~~~~~~~~~~dp~t  173 (390)
                      ...++..|+..  ..|+++...|..+|...              ..+++.+.||++||.....   ....+++++|||.+
T Consensus        57 G~afy~ldL~~~~k~W~~~a~FpG~~rnqa--------------~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~  122 (381)
T COG3055          57 GTAFYVLDLKKPGKGWTKIADFPGGARNQA--------------VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST  122 (381)
T ss_pred             CccceehhhhcCCCCceEcccCCCcccccc--------------hheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence            34577777754  68999999998666541              5566788999999875432   24678999999999


Q ss_pred             CceecCCCC-CCCCcceEEEEECC-EEEEEeccCCCC-------------------------------CCCccCeEEEEE
Q 016368          174 NTWFFGPQL-SIPRRWCAMGSVGG-VVYVASGVGAHY-------------------------------RGDVARSMKKWD  220 (390)
Q Consensus       174 ~~W~~~~~~-~~~r~~~~~~~~~~-~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd  220 (390)
                      ++|+++... |..-..++++.+++ +||++||.+...                               +-.....+..||
T Consensus       123 nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~  202 (381)
T COG3055         123 NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD  202 (381)
T ss_pred             ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence            999998653 45567788888877 999999975431                               112345789999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc---CCCCceeEEEeCC--CCCeEecCCCCCCCCC-----
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK---GNGAKDGAIYNVE--LDKWKEMPEGMHAGWN-----  290 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~---g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~-----  290 (390)
                      |+++.    |+.+...|....+  +.+.+.-++++.++.|.   |........++..  ..+|..+++ .|.+..     
T Consensus       203 p~~n~----W~~~G~~pf~~~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~-lp~~~~~~~eG  275 (381)
T COG3055         203 PSTNQ----WRNLGENPFYGNA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD-LPAPIGSNKEG  275 (381)
T ss_pred             cccch----hhhcCcCcccCcc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC-CCCCCCCCccc
Confidence            99999    9999877654331  34444456768887654   2222223455554  458999877 333322     


Q ss_pred             --CceEEEeeCCeEEEEeCCCC------------------------cEEEEECCCCceEEcccccccccceeEEEECCEE
Q 016368          291 --GPAASTMNEEELYVVNEGKG------------------------RLSKYDADHDWWDEVIELAELKGAEKITAARGRV  344 (390)
Q Consensus       291 --~~~~~~~~~g~lyv~gg~~~------------------------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l  344 (390)
                        ++... -.++.+.|.||...                        +|+.||  .+.|+.+.+||........+..++.|
T Consensus       276 vAGaf~G-~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~v  352 (381)
T COG3055         276 VAGAFSG-KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKV  352 (381)
T ss_pred             cceeccc-eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcE
Confidence              22222 36788888887321                        788887  78999999999977666667779999


Q ss_pred             EEEeeC
Q 016368          345 CAVCEN  350 (390)
Q Consensus       345 ~i~g~~  350 (390)
                      |+||+.
T Consensus       353 l~IGGE  358 (381)
T COG3055         353 LLIGGE  358 (381)
T ss_pred             EEEccc
Confidence            999854

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.44  E-value=1.5e-11  Score=109.47  Aligned_cols=201  Identities=17%  Similarity=0.354  Sum_probs=139.8

Q ss_pred             CCcEEEeCC--CCceecCCCCC-CCCcceEEEEECCEEEEEeccCCCCC--CCccCeEEEEECCCCccccccEEcccC-C
Q 016368          164 ASPLAFNPQ--SNTWFFGPQLS-IPRRWCAMGSVGGVVYVASGVGAHYR--GDVARSMKKWDLKSDREDWKWEKKAQL-K  237 (390)
Q Consensus       164 ~~~~~~dp~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~yd~~t~~~~~~W~~~~~~-~  237 (390)
                      ...+..|..  ...|+++...| .+|.....++++++||||||......  ....+++++|||++++    |+++... |
T Consensus        58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns----W~kl~t~sP  133 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS----WHKLDTRSP  133 (381)
T ss_pred             ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh----hheeccccc
Confidence            456666765  45899999988 57999999999999999999865432  4567899999999999    9998764 3


Q ss_pred             CCCccccceEEEEECC-EEEEEcccCCC------------------------------------CceeEEEeCCCCCeEe
Q 016368          238 DGRFSREAVEAVGFKG-NLCMVNLKGNG------------------------------------AKDGAIYNVELDKWKE  280 (390)
Q Consensus       238 ~~~~~r~~~~~~~~~g-~lyv~gg~g~~------------------------------------~~~~~~yd~~~~~W~~  280 (390)
                      ....   ++.++.+++ ++|++||....                                    .+.+..||+.+++|+.
T Consensus       134 ~gl~---G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~  210 (381)
T COG3055         134 TGLV---GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRN  210 (381)
T ss_pred             cccc---cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhh
Confidence            3333   577777887 99999976210                                    1123389999999999


Q ss_pred             cCCCCCCCCCCceEEEeeCCeEEEEeCCC--C----cEEEEECC--CCceEEccccccccc------ceeEEE-ECCEEE
Q 016368          281 MPEGMHAGWNGPAASTMNEEELYVVNEGK--G----RLSKYDAD--HDWWDEVIELAELKG------AEKITA-ARGRVC  345 (390)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~lyv~gg~~--~----~v~~yd~~--~~~W~~i~~~p~~r~------~~~~~~-~~g~l~  345 (390)
                      +...+-.+.++.+.+. -++++.++.|.-  +    .+.+++..  ..+|..+..+|.+..      ..++.. .++.+.
T Consensus       211 ~G~~pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~l  289 (381)
T COG3055         211 LGENPFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVL  289 (381)
T ss_pred             cCcCcccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEE
Confidence            9863445566655553 567788888732  1    55566554  457999998886532      122222 366777


Q ss_pred             EEeeC------------------------CceEEEEEcCCCCCcceEe--cCCCCeeE
Q 016368          346 AVCEN------------------------GERIMVVDVLASPARAWLV--DPPRGFQV  377 (390)
Q Consensus       346 i~g~~------------------------~~~v~~~d~~~~~~~~W~~--~~p~g~~~  377 (390)
                      +.|+.                        ..+|+++|  ++   .|.+  .+|.+++.
T Consensus       290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~GeLp~~l~Y  342 (381)
T COG3055         290 VAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG---SWKIVGELPQGLAY  342 (381)
T ss_pred             EecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC---ceeeecccCCCccc
Confidence            77632                        12788888  44   7984  36666543

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.18  E-value=7.5e-09  Score=91.56  Aligned_cols=200  Identities=15%  Similarity=0.143  Sum_probs=122.2

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCc---c--eEEEEE----CCEEEEEeccCCCCCCCccCe
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRR---W--CAMGSV----GGVVYVASGVGAHYRGDVARS  215 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~---~--~~~~~~----~~~lyv~GG~~~~~~~~~~~~  215 (390)
                      .+++|+++...        ..+.++||.|++|+.+|+.+.++.   .  .+.+..    .-||..+.....   ......
T Consensus         3 sCnGLlc~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~   71 (230)
T TIGR01640         3 PCDGLICFSYG--------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSE   71 (230)
T ss_pred             ccceEEEEecC--------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCcc
Confidence            45788876531        579999999999999987654311   1  111111    125555544321   113458


Q ss_pred             EEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCC--ceeEEEeCCCCCeEe-cCCCCCCC--CC
Q 016368          216 MKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGA--KDGAIYNVELDKWKE-MPEGMHAG--WN  290 (390)
Q Consensus       216 ~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~--~~~~~yd~~~~~W~~-~~~~~~~~--~~  290 (390)
                      +++|+..+++    |+.+...+.....  ....+.++|.+|++...+.+.  ..+..||+.+++|++ ++.+....  ..
T Consensus        72 ~~Vys~~~~~----Wr~~~~~~~~~~~--~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~  145 (230)
T TIGR01640        72 HQVYTLGSNS----WRTIECSPPHHPL--KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD  145 (230)
T ss_pred             EEEEEeCCCC----ccccccCCCCccc--cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence            8999999999    9998854322111  122677999999996332211  257799999999995 55411111  12


Q ss_pred             CceEEEeeCCeEEEEeCCC--C--cEEEEE-CCCCceEEcccccc--cc---c--ceeEEEECCEEEEEeeC--CceEEE
Q 016368          291 GPAASTMNEEELYVVNEGK--G--RLSKYD-ADHDWWDEVIELAE--LK---G--AEKITAARGRVCAVCEN--GERIMV  356 (390)
Q Consensus       291 ~~~~~~~~~g~lyv~gg~~--~--~v~~yd-~~~~~W~~i~~~p~--~r---~--~~~~~~~~g~l~i~g~~--~~~v~~  356 (390)
                      ...++. ++|+|.++....  .  +||+.+ .....|++.-.++.  ..   .  ....+..+|+|++....  +.-+..
T Consensus       146 ~~~L~~-~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~  224 (230)
T TIGR01640       146 YLSLIN-YKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY  224 (230)
T ss_pred             ceEEEE-ECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEE
Confidence            344555 889999987632  2  677775 33557998765542  11   1  12234458888887543  223888


Q ss_pred             EEcCCC
Q 016368          357 VDVLAS  362 (390)
Q Consensus       357 ~d~~~~  362 (390)
                      ||+.++
T Consensus       225 y~~~~~  230 (230)
T TIGR01640       225 YNVGEN  230 (230)
T ss_pred             EeccCC
Confidence            898753

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13964 Kelch_6: Kelch motif

Probab=99.13  E-value=1.5e-10  Score=75.85  Aligned_cols=50  Identities=26%  Similarity=0.540  Sum_probs=45.3

Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      ||.+|++++++++|||+||....  ....+++++||++|++    |+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence            68899999999999999999874  5678999999999999    99999999764

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.96  E-value=1.2e-09  Score=70.59  Aligned_cols=47  Identities=26%  Similarity=0.485  Sum_probs=42.6

Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ||.+|++++++++||++||....  ....+++++||+++++    |+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~----W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNT----WEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTE----EEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCE----EEEcCCCC
Confidence            68999999999999999999873  6788999999999999    99999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.94  E-value=7.7e-10  Score=102.36  Aligned_cols=174  Identities=12%  Similarity=0.087  Sum_probs=127.9

Q ss_pred             CCCCceecCCCC----------CCCCcceEEEEECC--EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          171 PQSNTWFFGPQL----------SIPRRWCAMGSVGG--VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       171 p~t~~W~~~~~~----------~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      +.+-.|.++++.          |..|.+|-++...+  .||+.||.++   ...+.+.|+|+...+.    |..+-.-..
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t~  308 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDTE  308 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCCC
Confidence            456688887653          35689999998865  9999999998   5677899999999999    998765444


Q ss_pred             CCccccceEEEEECC--EEEEEccc-C-------CCCceeEEEeCCCCCeEecCCC-----CCCCCCCceEEEeeCCe--
Q 016368          239 GRFSREAVEAVGFKG--NLCMVNLK-G-------NGAKDGAIYNVELDKWKEMPEG-----MHAGWNGPAASTMNEEE--  301 (390)
Q Consensus       239 ~~~~r~~~~~~~~~g--~lyv~gg~-g-------~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~g~--  301 (390)
                      .+..|.+|.+|....  |+|++|-+ +       .+..+.++||..++.|..+...     -|..-+-|++++ .+.+  
T Consensus       309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~V-d~~k~~  387 (723)
T KOG2437|consen  309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCV-DSEKHM  387 (723)
T ss_pred             CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeE-ecCcce
Confidence            444455788887666  89999754 1       1235678999999999987642     334445678887 6666  


Q ss_pred             EEEEeCCC--------CcEEEEECCCCceEEccccc----------ccccceeEEEE--CCEEEEEeeCCc
Q 016368          302 LYVVNEGK--------GRLSKYDADHDWWDEVIELA----------ELKGAEKITAA--RGRVCAVCENGE  352 (390)
Q Consensus       302 lyv~gg~~--------~~v~~yd~~~~~W~~i~~~p----------~~r~~~~~~~~--~g~l~i~g~~~~  352 (390)
                      |||+||..        +.++.||.....|.....--          ..|.++.|...  +.++|++|+.+.
T Consensus       388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s  458 (723)
T KOG2437|consen  388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS  458 (723)
T ss_pred             EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence            99999942        27899999999999876322          23556666555  678999986654

>PF13964 Kelch_6: Kelch motif

Probab=98.84  E-value=7.1e-09  Score=67.87  Aligned_cols=45  Identities=18%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR  186 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r  186 (390)
                      +++++++++|++||.... ....+++++||+.|++|+.+++||.||
T Consensus         6 s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             EEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            788889999999998764 378899999999999999999999887

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.84  E-value=5.3e-06  Score=76.89  Aligned_cols=134  Identities=13%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCC----CCCCC--CCceEEE
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG----MHAGW--NGPAAST  296 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~----~~~~~--~~~~~~~  296 (390)
                      .+.    |+.+..+.. .    ...++.++|++|++.    ....+.++|.+-. =+++...    +..+.  .....+.
T Consensus       189 ~~~----Wt~l~~~~~-~----~~DIi~~kGkfYAvD----~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVE  254 (373)
T PLN03215        189 GNV----LKALKQMGY-H----FSDIIVHKGQTYALD----SIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVE  254 (373)
T ss_pred             CCe----eeEccCCCc-e----eeEEEEECCEEEEEc----CCCeEEEEecCCc-eeeecceecccccCCcccCceeEEE
Confidence            477    999976433 2    267889999999994    2244556664321 1122210    11111  1233454


Q ss_pred             eeCCeEEEEeCCC---------------C----cEEEEECCCCceEEcccccccc------cceeEE------EECCEEE
Q 016368          297 MNEEELYVVNEGK---------------G----RLSKYDADHDWWDEVIELAELK------GAEKIT------AARGRVC  345 (390)
Q Consensus       297 ~~~g~lyv~gg~~---------------~----~v~~yd~~~~~W~~i~~~p~~r------~~~~~~------~~~g~l~  345 (390)
                       ..|+|+++....               .    .+++.|.+..+|.++..+....      ...++.      .-++.||
T Consensus       255 -s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIY  333 (373)
T PLN03215        255 -CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIY  333 (373)
T ss_pred             -ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEE
Confidence             778899987621               1    5677798899999999886431      111111      1257788


Q ss_pred             EEeeCCceEEEEEcCCCCCcceEecCCC
Q 016368          346 AVCENGERIMVVDVLASPARAWLVDPPR  373 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~~~~~~W~~~~p~  373 (390)
                      +.  ++....|||+...+...-.+.+++
T Consensus       334 Ft--dd~~~~v~~~~dg~~~~~~~~~~~  359 (373)
T PLN03215        334 FT--EDTMPKVFKLDNGNGSSIETTISE  359 (373)
T ss_pred             EE--CCCcceEEECCCCCccceEeecCc
Confidence            86  334566888888765445554443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.83  E-value=3.9e-08  Score=87.21  Aligned_cols=278  Identities=14%  Similarity=0.139  Sum_probs=148.9

Q ss_pred             CCCCc----HHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCCC-------------------cccE-EEEeecCCCC
Q 016368           34 LPGLP----NHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFPP-------------------FFSL-YALLFNNNKP   86 (390)
Q Consensus        34 ~~~LP----~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~~-------------------~~~l-~~~~~~~~~~   86 (390)
                      +..||    +++.+.||+.|-   |+.+..|||+|+++++.+....                   ..|- |.+....   
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~---  151 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRP---  151 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCC---
Confidence            55689    999999999999   8999999999999999987543                   1111 1111111   


Q ss_pred             CCCCCCcccCCCceeEEE---------EeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecC
Q 016368           87 SHNNNNYYSFNSSMEFFC---------FDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTP  157 (390)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~---------~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~  157 (390)
                           +..+..+ ..++.         .+...+.|+.-..+-.  +.+    -++  -...+..|+..++..++-|    
T Consensus       152 -----~~~~~~~-n~f~~~l~pki~~di~~idsNWr~Gr~~~~--rin----c~S--e~skgVYClQYDD~kiVSG----  213 (499)
T KOG0281|consen  152 -----NDGGFPP-NSFYRLLYPKIIQDIETIESNWRCGRHLLQ--RIN----CRS--ENSKGVYCLQYDDEKIVSG----  213 (499)
T ss_pred             -----CcCCcCC-CcchhhhhHHHHHHHhhhhcchhccceeee--eec----CCc--ccCCceEEEEecchhhhcc----
Confidence                 0000000 00100         0122345654322211  000    000  0011224555556555544    


Q ss_pred             CCCCCCCCcEEEeCCCCceecCCCCCCCCcceE-EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368          158 HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCA-MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL  236 (390)
Q Consensus       158 ~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~  236 (390)
                         ..-+.+-+||..+..-.++-   ....+.. +.-++.++.+.|..+.        ++-++|.+|+.      .+..+
T Consensus       214 ---lrDnTikiWD~n~~~c~~~L---~GHtGSVLCLqyd~rviisGSSDs--------TvrvWDv~tge------~l~tl  273 (499)
T KOG0281|consen  214 ---LRDNTIKIWDKNSLECLKIL---TGHTGSVLCLQYDERVIVSGSSDS--------TVRVWDVNTGE------PLNTL  273 (499)
T ss_pred             ---cccCceEEeccccHHHHHhh---hcCCCcEEeeeccceEEEecCCCc--------eEEEEeccCCc------hhhHH
Confidence               22356777777655433221   1122222 2223677666554443        78899988877      12111


Q ss_pred             CCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          237 KDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       237 ~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      -.-..  .-....+.+|.|..+.    -.++..++|...-+=..+-. ...+...+.-++..+++..|-...+..+..|+
T Consensus       274 ihHce--aVLhlrf~ng~mvtcS----kDrsiaVWdm~sps~it~rr-VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  274 IHHCE--AVLHLRFSNGYMVTCS----KDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hhhcc--eeEEEEEeCCEEEEec----CCceeEEEeccCchHHHHHH-HHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence            11000  0122334566666553    34556777776544111111 11222222223347788555555667899999


Q ss_pred             CCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..|......  +...+.+.+|.-+.|++.|-|+.++.|-+||+..
T Consensus       347 ~st~efvRt--l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  347 TSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             ccceeeehh--hhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence            888766554  4456667788888999999988888999999766

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.82  E-value=1.2e-08  Score=66.33  Aligned_cols=49  Identities=20%  Similarity=0.442  Sum_probs=42.1

Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          185 PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       185 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ||..|++++++++|||+||..........+++++||+++++    |+.++.++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence            68899999999999999999222236788999999999999    99998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.70  E-value=2.2e-08  Score=65.20  Aligned_cols=47  Identities=19%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             CCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          185 PRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       185 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ||.+|+++.+ +++||++||....  ....+++++||+++++    |++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~--~~~~~d~~~~d~~~~~----W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSS--GSPLNDLWIFDIETNT----WTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCC--CcccCCEEEEECCCCE----EEECCCCC
Confidence            6899999998 5899999999873  4688999999999999    99998876

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.62  E-value=7e-08  Score=62.76  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=41.3

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV  194 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~  194 (390)
                      +.+|++||.........+++++||+.+++|++++++|.+|..|+++++
T Consensus         2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            578888888733347889999999999999999999999999998864

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.57  E-value=3.7e-08  Score=91.50  Aligned_cols=189  Identities=12%  Similarity=0.052  Sum_probs=124.8

Q ss_pred             CCCCceeCCCCCCCCCcccccccccccccCCCceEEeecC--eEEEEEeecCCCCCCCCCcEEEeCCCCceecCC---CC
Q 016368          108 ISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRN--NLVLIAATTPHFLPALASPLAFNPQSNTWFFGP---QL  182 (390)
Q Consensus       108 ~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~---~~  182 (390)
                      -+..|..++....  +.....   ...+++-+.+.|...+  .+|..||.++-  ..+.++|.|+...++|..+.   ..
T Consensus       237 y~~~W~~i~~~~~--~~~~~~---~~p~~RgGHQMV~~~~~~CiYLYGGWdG~--~~l~DFW~Y~v~e~~W~~iN~~t~~  309 (723)
T KOG2437|consen  237 YKPRWSQIIPKST--KGDGED---NRPGMRGGHQMVIDVQTECVYLYGGWDGT--QDLADFWAYSVKENQWTCINRDTEG  309 (723)
T ss_pred             ccccccccCchhh--cccccc---cCccccCcceEEEeCCCcEEEEecCcccc--hhHHHHHhhcCCcceeEEeecCCCC
Confidence            4566877764331  000000   2233444447766655  79999998765  67899999999999998764   46


Q ss_pred             CCCCcceEEEEEC--CEEEEEeccCCCC---CCCccCeEEEEECCCCccccccEEccc------CCCCCccccceEEEEE
Q 016368          183 SIPRRWCAMGSVG--GVVYVASGVGAHY---RGDVARSMKKWDLKSDREDWKWEKKAQ------LKDGRFSREAVEAVGF  251 (390)
Q Consensus       183 ~~~r~~~~~~~~~--~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~~~~~W~~~~~------~~~~~~~r~~~~~~~~  251 (390)
                      |..|..|.++..-  .|||+.|-+-+..   ......++|+||..++.    |.-+..      -|...+   .|.+++.
T Consensus       310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vf---DHqM~Vd  382 (723)
T KOG2437|consen  310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVF---DHQMCVD  382 (723)
T ss_pred             CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceee---cceeeEe
Confidence            7889999888774  4999999874431   12345789999999999    987653      222333   4778888


Q ss_pred             CCE--EEEEcccCCC----C-ceeEEEeCCCCCeEecCCCC---------CCCCCCceEEE-eeCCeEEEEeCCCC
Q 016368          252 KGN--LCMVNLKGNG----A-KDGAIYNVELDKWKEMPEGM---------HAGWNGPAAST-MNEEELYVVNEGKG  310 (390)
Q Consensus       252 ~g~--lyv~gg~g~~----~-~~~~~yd~~~~~W~~~~~~~---------~~~~~~~~~~~-~~~g~lyv~gg~~~  310 (390)
                      +.+  +||+||.-..    . .....||.....|..+....         ...|.++.+-. .-+..+|++||...
T Consensus       383 ~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s  458 (723)
T KOG2437|consen  383 SEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS  458 (723)
T ss_pred             cCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence            777  9999876221    1 22458999999998765311         12222333322 36789999998654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.53  E-value=6.2e-08  Score=62.40  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             CCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368           34 LPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY   69 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~   69 (390)
                      |..||+|++.+||++||   +.++.+|||+|+.++.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~   39 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNS   39 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChh
Confidence            56899999999999999   8999999999999998874

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.52  E-value=2.4e-05  Score=69.16  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEe-ecC-eEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG-VRN-NLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ..+.++||.|++|..+|+++. +.....    ..   .+++.... .+. +++.+......  .....+.+|+..+++|+
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~-~~~~~~----~~---~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr   83 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKS-RRSNKE----SD---TYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWR   83 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCC-cccccc----cc---eEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCcc
Confidence            458999999999999986554 211100    00   00111111 122 45544432211  23457889999999999


Q ss_pred             cCCCCCCC-CcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCc-cccceEEEEECCE
Q 016368          178 FGPQLSIP-RRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRF-SREAVEAVGFKGN  254 (390)
Q Consensus       178 ~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~-~r~~~~~~~~~g~  254 (390)
                      .+...+.. ......+.++|.||.+.....   ......+..||..+++    |++ ++. |.... .......+.++|+
T Consensus        84 ~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~~~IvsFDl~~E~----f~~~i~~-P~~~~~~~~~~~L~~~~G~  155 (230)
T TIGR01640        84 TIECSPPHHPLKSRGVCINGVLYYLAYTLK---TNPDYFIVSFDVSSER----FKEFIPL-PCGNSDSVDYLSLINYKGK  155 (230)
T ss_pred             ccccCCCCccccCCeEEECCEEEEEEEECC---CCCcEEEEEEEcccce----Eeeeeec-CccccccccceEEEEECCE
Confidence            98743321 112236778999999875432   1112379999999999    995 443 32221 1113557778999


Q ss_pred             EEEEcccCC-CCceeEEEe-CCCCCeEecCCC-C-CCCCC---CceEEEeeCCeEEEEeCC-CC-cEEEEECCCC
Q 016368          255 LCMVNLKGN-GAKDGAIYN-VELDKWKEMPEG-M-HAGWN---GPAASTMNEEELYVVNEG-KG-RLSKYDADHD  320 (390)
Q Consensus       255 lyv~gg~g~-~~~~~~~yd-~~~~~W~~~~~~-~-~~~~~---~~~~~~~~~g~lyv~gg~-~~-~v~~yd~~~~  320 (390)
                      +.++..... ..-++++.+ -..+.|++.-.. + +....   .....+..+|+|++.... .+ .+..||++++
T Consensus       156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            998853211 112344443 335579874321 0 11111   112222378898887763 13 3899998864

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.49  E-value=1.7e-07  Score=60.33  Aligned_cols=41  Identities=24%  Similarity=0.507  Sum_probs=35.2

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCC------cEEEEECCCCceEEccccc
Q 016368          288 GWNGPAASTMNEEELYVVNEGKG------RLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       288 ~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd~~~~~W~~i~~~p  329 (390)
                      +|..+++++ ++++||++||..+      .+++||+.+++|+++++||
T Consensus         1 pR~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVV-VGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEE-ETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEE-ECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            356677887 9999999999654      8999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.48  E-value=4e-07  Score=59.15  Aligned_cols=48  Identities=23%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG  250 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~  250 (390)
                      +++|||+||... ......+++++||+.+++    |++++++|.+|.   .|++++
T Consensus         1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~---~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNT----WTRIGDLPPPRS---GHTATV   48 (49)
T ss_pred             CCEEEEECCcCC-CCCCEecCEEEEECCCCE----EEECCCCCCCcc---ceEEEE
Confidence            578999999983 126788999999999999    999998888776   687775

>smart00612 Kelch Kelch domain

Probab=98.45  E-value=3.3e-07  Score=58.89  Aligned_cols=47  Identities=19%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC
Q 016368          197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG  253 (390)
Q Consensus       197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g  253 (390)
                      +||++||...   ....+++++||+.+++    |+.+++|+.++.   .++++.++|
T Consensus         1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~---~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRS---GHGVAVING   47 (47)
T ss_pred             CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCccc---cceEEEeCC
Confidence            4899999865   4567899999999999    999999998876   577777664

>smart00612 Kelch Kelch domain

Probab=98.44  E-value=3.8e-07  Score=58.58  Aligned_cols=47  Identities=19%  Similarity=0.415  Sum_probs=39.9

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECC
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG  196 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~  196 (390)
                      .+|++||....  ...+++++|||.+++|+.+++|+.+|..++++++++
T Consensus         1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            37888887542  567899999999999999999999999999888764

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=98.30  E-value=0.0013  Score=61.46  Aligned_cols=141  Identities=15%  Similarity=0.234  Sum_probs=89.4

Q ss_pred             eEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCC----ccCe
Q 016368          141 QSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGD----VARS  215 (390)
Q Consensus       141 ~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~~~  215 (390)
                      .++++ +.+++.+...        ..+.+||..|..-...|.+..+.....++.++++||++..........    ..-.
T Consensus        70 ~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE  141 (342)
T PF07893_consen   70 DFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFE  141 (342)
T ss_pred             EEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEE
Confidence            55565 5566665321        468999999999999999888877778888899999998775421110    0223


Q ss_pred             EEEEECC----CCccccccEEcccCCCCCcccc----ceEEEEE-CCEEEEEcccCCCCc--eeEEEeCCCCCeEecCCC
Q 016368          216 MKKWDLK----SDREDWKWEKKAQLKDGRFSRE----AVEAVGF-KGNLCMVNLKGNGAK--DGAIYNVELDKWKEMPEG  284 (390)
Q Consensus       216 ~~~yd~~----t~~~~~~W~~~~~~~~~~~~r~----~~~~~~~-~g~lyv~gg~g~~~~--~~~~yd~~~~~W~~~~~~  284 (390)
                      +.+|++.    .....|.|+.+++.|.....+.    -.+-+++ +..|+|--    .+.  .+..||+++.+|+.... 
T Consensus       142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~----~~~~~GTysfDt~~~~W~~~Gd-  216 (342)
T PF07893_consen  142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSV----NGRRWGTYSFDTESHEWRKHGD-  216 (342)
T ss_pred             EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEe----cCCceEEEEEEcCCcceeeccc-
Confidence            4444521    2334577999988664433211    2334445 55677731    222  58899999999999987 


Q ss_pred             CCCCCCCceE
Q 016368          285 MHAGWNGPAA  294 (390)
Q Consensus       285 ~~~~~~~~~~  294 (390)
                      +..+-.+.+.
T Consensus       217 W~LPF~G~a~  226 (342)
T PF07893_consen  217 WMLPFHGQAE  226 (342)
T ss_pred             eecCcCCccE
Confidence            5444443333

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=7.2e-07  Score=55.48  Aligned_cols=35  Identities=37%  Similarity=0.551  Sum_probs=32.4

Q ss_pred             CcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCC
Q 016368           37 LPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFP   71 (390)
Q Consensus        37 LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~   71 (390)
                      ||+|++.+||.+|+   +.++++|||+|+.++.++.|.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999   889999999999999988754

>PF13854 Kelch_5: Kelch motif

Probab=98.26  E-value=3e-06  Score=52.89  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=35.9

Q ss_pred             CCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          182 LSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       182 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      +|.+|..|++++++++||++||... ......+++++||+.+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence            4788999999999999999999984 23678899999998763

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.23  E-value=2.8e-06  Score=55.15  Aligned_cols=43  Identities=9%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             eEEeecCeEEEEEee-cCCCCCCCCCcEEEeCCCCceecCCCCC
Q 016368          141 QSLGVRNNLVLIAAT-TPHFLPALASPLAFNPQSNTWFFGPQLS  183 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~-~~~~~~~~~~~~~~dp~t~~W~~~~~~~  183 (390)
                      ++++.++++|++||. ........+++++||+.+++|+.+++++
T Consensus         6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            788889999999998 3333378899999999999999998874

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.21  E-value=2.5e-05  Score=68.53  Aligned_cols=139  Identities=14%  Similarity=0.142  Sum_probs=96.1

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCC----CCeEecCCCCCCCCC
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVEL----DKWKEMPEGMHAGWN  290 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~----~~W~~~~~~~~~~~~  290 (390)
                      -...||+.|++    ++.+.......+   +..+..-||++.+.||...|.+.+-.|++.+    ..|.+.+..|..+|-
T Consensus        47 ~s~~yD~~tn~----~rpl~v~td~FC---Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   47 HSVEYDPNTNT----FRPLTVQTDTFC---SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEEecCCCc----EEeccCCCCCcc---cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence            35679999999    998876544444   2334456999999998866777778898865    589998765888888


Q ss_pred             CceEEEeeCCeEEEEeCCCCcEEEEECCCC---c---eEEccc----ccccccceeEEEECCEEEEEeeCCceEEEEEcC
Q 016368          291 GPAASTMNEEELYVVNEGKGRLSKYDADHD---W---WDEVIE----LAELKGAEKITAARGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       291 ~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~---~---W~~i~~----~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .+++..+-||+++|+||.....+.|-+...   .   |..+..    .+.....+....-+|+||+++.  ..-+++|..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--~~s~i~d~~  197 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--RGSIIYDYK  197 (243)
T ss_pred             cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--CCcEEEeCC
Confidence            787777679999999998775555555421   1   221221    1222334555555999999954  356677888


Q ss_pred             CC
Q 016368          361 AS  362 (390)
Q Consensus       361 ~~  362 (390)
                      ++
T Consensus       198 ~n  199 (243)
T PF07250_consen  198 TN  199 (243)
T ss_pred             CC
Confidence            77

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.19  E-value=1.7e-06  Score=56.15  Aligned_cols=41  Identities=17%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             CCCCceEEEee-CCeEEEEeCCCC------cEEEEECCCCceEEccccc
Q 016368          288 GWNGPAASTMN-EEELYVVNEGKG------RLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       288 ~~~~~~~~~~~-~g~lyv~gg~~~------~v~~yd~~~~~W~~i~~~p  329 (390)
                      +|.+++++. + +++||++||.+.      ++++||+++++|++++++|
T Consensus         1 pR~~h~~~~-~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVS-IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEE-E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEE-EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            466778887 6 699999999532      8999999999999998776

>PLN02772 guanylate kinase

Probab=98.15  E-value=1.9e-05  Score=73.63  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             CCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccC
Q 016368          184 IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKG  262 (390)
Q Consensus       184 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g  262 (390)
                      .++..++++.+++++||+||.++.  ....+.+++||..|++    |....-....+.+|.+|+++++ +++|+|+++.+
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~--~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEG--NTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCC--ccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            378889999999999999998762  3367899999999999    9987766655566668999987 68999996443


Q ss_pred             CCCceeEEEeCCC
Q 016368          263 NGAKDGAIYNVEL  275 (390)
Q Consensus       263 ~~~~~~~~yd~~~  275 (390)
                      .-..+.+.+...|
T Consensus        97 ~~~~~~w~l~~~t  109 (398)
T PLN02772         97 APDDSIWFLEVDT  109 (398)
T ss_pred             CCccceEEEEcCC
Confidence            2234455444443

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.14  E-value=6e-07  Score=58.07  Aligned_cols=36  Identities=36%  Similarity=0.511  Sum_probs=30.0

Q ss_pred             CCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368           34 LPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY   69 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~   69 (390)
                      +..||+|++.+||.+|+   +.+++.|||+|++++.++.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~   41 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR   41 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence            45799999999999999   9999999999999998754

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN02772 guanylate kinase

Probab=98.12  E-value=1.6e-05  Score=74.18  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCC------cEEEEECCCCceEEc---ccccccccceeEEEE-CCEEEEEeeC---Cce
Q 016368          287 AGWNGPAASTMNEEELYVVNEGKG------RLSKYDADHDWWDEV---IELAELKGAEKITAA-RGRVCAVCEN---GER  353 (390)
Q Consensus       287 ~~~~~~~~~~~~~g~lyv~gg~~~------~v~~yd~~~~~W~~i---~~~p~~r~~~~~~~~-~g~l~i~g~~---~~~  353 (390)
                      .++..+++++ +++++||+||.+.      .++.||..+..|..-   ++.|.+|.+|+++++ +++|+|++++   +++
T Consensus        23 ~~~~~~tav~-igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~  101 (398)
T PLN02772         23 KPKNRETSVT-IGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDS  101 (398)
T ss_pred             CCCCcceeEE-ECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccc
Confidence            3555677777 9999999998432      799999999999875   477888999998888 7999999844   569


Q ss_pred             EEEEEcCCC
Q 016368          354 IMVVDVLAS  362 (390)
Q Consensus       354 v~~~d~~~~  362 (390)
                      +|++++.++
T Consensus       102 ~w~l~~~t~  110 (398)
T PLN02772        102 IWFLEVDTP  110 (398)
T ss_pred             eEEEEcCCH
Confidence            999999874

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.11  E-value=5.2e-05  Score=66.51  Aligned_cols=154  Identities=16%  Similarity=0.281  Sum_probs=98.5

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCC----C
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQS----N  174 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t----~  174 (390)
                      ...-..||+.+++++.+.....      .||-      .   ++...+|.++..||...+    ...+..|+|.+    .
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~td------~FCS------g---g~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~  105 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQTD------TFCS------G---GAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTC  105 (243)
T ss_pred             eEEEEEEecCCCcEEeccCCCC------Cccc------C---cCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCC
Confidence            3346789999999998864322      2221      0   333346677777776432    35677788875    6


Q ss_pred             ceecCC-CCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCc-cccccEEccc----CCCCCccccceE
Q 016368          175 TWFFGP-QLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDR-EDWKWEKKAQ----LKDGRFSREAVE  247 (390)
Q Consensus       175 ~W~~~~-~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-~~~~W~~~~~----~~~~~~~r~~~~  247 (390)
                      .|.+.+ .|..+|-+.+...+ +|+++|+||....       ..|.+...... ..+.|..+..    .+...+   .+.
T Consensus       106 ~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlY---P~~  175 (243)
T PF07250_consen  106 DWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLY---PFV  175 (243)
T ss_pred             CceECcccccCCCccccceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccC---ceE
Confidence            898876 58899999988887 7999999998741       33444432211 0111333322    222333   255


Q ss_pred             EEEECCEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCC
Q 016368          248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHA  287 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~  287 (390)
                      .+.-+|+|+++     ......+||..++++ +.++. +|.
T Consensus       176 ~llPdG~lFi~-----an~~s~i~d~~~n~v~~~lP~-lPg  210 (243)
T PF07250_consen  176 HLLPDGNLFIF-----ANRGSIIYDYKTNTVVRTLPD-LPG  210 (243)
T ss_pred             EEcCCCCEEEE-----EcCCcEEEeCCCCeEEeeCCC-CCC
Confidence            55679999999     456788999999987 67777 544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.87  E-value=0.015  Score=55.86  Aligned_cols=181  Identities=12%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             CCcEEEeCCCCc--eecCCCCCC--CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNT--WFFGPQLSI--PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~--W~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..++.+|+.+++  |+.-...+.  .+...+-++.++.+|+..+.         ..+..+|+++++.  .|+.-...+..
T Consensus       170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~--~W~~~~~~~~~  238 (394)
T PRK11138        170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQL--IWQQRISQPTG  238 (394)
T ss_pred             CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChh--hheeccccCCC
Confidence            468999998884  766432221  12223344557777764322         2577888888763  38743221110


Q ss_pred             -----CccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcE
Q 016368          240 -----RFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRL  312 (390)
Q Consensus       240 -----~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v  312 (390)
                           +......+.++.++.+|+.+    ......++|..++  .|+..-.   ..   ...++ .++.||+.. .++.+
T Consensus       239 ~~~~~~~~~~~~sP~v~~~~vy~~~----~~g~l~ald~~tG~~~W~~~~~---~~---~~~~~-~~~~vy~~~-~~g~l  306 (394)
T PRK11138        239 ATEIDRLVDVDTTPVVVGGVVYALA----YNGNLVALDLRSGQIVWKREYG---SV---NDFAV-DGGRIYLVD-QNDRV  306 (394)
T ss_pred             ccchhcccccCCCcEEECCEEEEEE----cCCeEEEEECCCCCEEEeecCC---Cc---cCcEE-ECCEEEEEc-CCCeE
Confidence                 00000133456799999885    2345778999876  5876322   11   12344 788999876 46789


Q ss_pred             EEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecC
Q 016368          313 SKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDP  371 (390)
Q Consensus       313 ~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~  371 (390)
                      +.+|.++.+  |+.-. + ..+...+.++.+|+||+. ..+..++++|..+.. ..|+...
T Consensus       307 ~ald~~tG~~~W~~~~-~-~~~~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG~-~~~~~~~  363 (394)
T PRK11138        307 YALDTRGGVELWSQSD-L-LHRLLTAPVLYNGYLVVG-DSEGYLHWINREDGR-FVAQQKV  363 (394)
T ss_pred             EEEECCCCcEEEcccc-c-CCCcccCCEEECCEEEEE-eCCCEEEEEECCCCC-EEEEEEc
Confidence            999998754  76422 1 112223455678999886 455588899987753 3577544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.85  E-value=0.011  Score=56.71  Aligned_cols=165  Identities=13%  Similarity=0.087  Sum_probs=97.2

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCC--------CcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIP--------RRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK  233 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~  233 (390)
                      ..++.+|+.++  .|+.--..+..        ....+-++.++.||+.+. +        ..+.++|+.+++.  .|+.-
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~--------g~l~ald~~tG~~--~W~~~  283 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N--------GNLVALDLRSGQI--VWKRE  283 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C--------CeEEEEECCCCCE--EEeec
Confidence            35777888876  47542111110        112334556889998652 1        2688999988763  38753


Q ss_pred             ccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368          234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      .  ..      ....+..++++|+..    ......++|.+++  .|+.-..   ..+...+.++ .+|.||+.. .++.
T Consensus       284 ~--~~------~~~~~~~~~~vy~~~----~~g~l~ald~~tG~~~W~~~~~---~~~~~~sp~v-~~g~l~v~~-~~G~  346 (394)
T PRK11138        284 Y--GS------VNDFAVDGGRIYLVD----QNDRVYALDTRGGVELWSQSDL---LHRLLTAPVL-YNGYLVVGD-SEGY  346 (394)
T ss_pred             C--CC------ccCcEEECCEEEEEc----CCCeEEEEECCCCcEEEccccc---CCCcccCCEE-ECCEEEEEe-CCCE
Confidence            1  11      123456799999985    3345778898876  4865322   1122233344 788888654 5778


Q ss_pred             EEEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEc
Q 016368          312 LSKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       312 v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~  359 (390)
                      ++.+|..+.+  |+.  .+.......+.++.+++|||. ..+..++.++.
T Consensus       347 l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~~  393 (394)
T PRK11138        347 LHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQ-ARDGTVYAITR  393 (394)
T ss_pred             EEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEE-eCCceEEEEeC
Confidence            9999998765  543  111122233456678999987 44557776653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.84  E-value=0.017  Score=50.84  Aligned_cols=190  Identities=16%  Similarity=0.232  Sum_probs=110.8

Q ss_pred             eecCeEEEEEeecCCCCCCCCCcEEEeCCCCc--eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          144 GVRNNLVLIAATTPHFLPALASPLAFNPQSNT--WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       144 ~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ...++.++++.       ....++.+|+.+++  |+.-.  +.+ ........++.||+....         ..+..+|.
T Consensus        33 ~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~v~v~~~~---------~~l~~~d~   93 (238)
T PF13360_consen   33 VPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGRVYVGTSD---------GSLYALDA   93 (238)
T ss_dssp             EEETTEEEEEE-------TTSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTEEEEEETT---------SEEEEEET
T ss_pred             EEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeec--ccc-ccceeeecccccccccce---------eeeEeccc
Confidence            33555555552       23689999998884  65433  111 111247778999887621         27899998


Q ss_pred             CCCccccccE-EcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCC-------
Q 016368          222 KSDREDWKWE-KKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNG-------  291 (390)
Q Consensus       222 ~t~~~~~~W~-~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~-------  291 (390)
                      .++..  .|+ .....+.... ......+..++.+|+..    ......++|++++  .|+.... .+.....       
T Consensus        94 ~tG~~--~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~  165 (238)
T PF13360_consen   94 KTGKV--LWSIYLTSSPPAGV-RSSSSPAVDGDRLYVGT----SSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDI  165 (238)
T ss_dssp             TTSCE--EEEEEE-SSCTCST-B--SEEEEETTEEEEEE----TCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTE
T ss_pred             CCcce--eeeecccccccccc-ccccCceEecCEEEEEe----ccCcEEEEecCCCcEEEEeecC-CCCCCcceeeeccc
Confidence            88763  488 3433222211 11234444577888774    3566789998877  5776443 3221111       


Q ss_pred             ceEEEeeCCeEEEEeCCCCcEEEEECCCCc--eEEccccccccccee-EEEECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          292 PAASTMNEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEK-ITAARGRVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~-~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      .+..+..++.+|+..+ ++.+..+|.++.+  |+..  +..   ... ....++.||+.. ....++.+|+.+... .|+
T Consensus       166 ~~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~-~W~  237 (238)
T PF13360_consen  166 NGSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV-VWQ  237 (238)
T ss_dssp             EEEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC--SS----ECECEECCCTEEEEEE-TTTEEEEEETTTTEE-EEE
T ss_pred             ccceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec--CCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCCCE-EeE
Confidence            1222224677777665 4446667999987  7433  111   223 555688888875 678999999998732 464

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.66  E-value=0.031  Score=53.24  Aligned_cols=163  Identities=15%  Similarity=0.059  Sum_probs=92.7

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCC-----C---cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIP-----R---RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK  233 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~-----r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~  233 (390)
                      ..+..+|+.++  .|+.--..+..     +   ......+.++.||+.+..         ..+.+||+++++.  .|+.-
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~--~W~~~  268 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRV--LWKRD  268 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcE--EEeec
Confidence            46888898876  47542111111     1   122334557888885421         2688999988763  37653


Q ss_pred             ccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368          234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      .  ..      ..+.+..++++|+..    ......++|..++  .|+....  .. ....+.+. .++.||+. ..++.
T Consensus       269 ~--~~------~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~~W~~~~~--~~-~~~ssp~i-~g~~l~~~-~~~G~  331 (377)
T TIGR03300       269 A--SS------YQGPAVDDNRLYVTD----ADGVVVALDRRSGSELWKNDEL--KY-RQLTAPAV-VGGYLVVG-DFEGY  331 (377)
T ss_pred             c--CC------ccCceEeCCEEEEEC----CCCeEEEEECCCCcEEEccccc--cC-CccccCEE-ECCEEEEE-eCCCE
Confidence            1  11      133446789999884    3345778898766  5875322  11 12223333 57777764 46778


Q ss_pred             EEEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEE
Q 016368          312 LSKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVV  357 (390)
Q Consensus       312 v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~  357 (390)
                      ++.+|..+.+  |+.-  ++......+.+..+++||+.+ .+..++.+
T Consensus       332 l~~~d~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~-~dG~l~~~  376 (377)
T TIGR03300       332 LHWLSREDGSFVARLK--TDGSGIASPPVVVGDGLLVQT-RDGDLYAF  376 (377)
T ss_pred             EEEEECCCCCEEEEEE--cCCCccccCCEEECCEEEEEe-CCceEEEe
Confidence            9999987654  4221  112123345677788988874 44455543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.64  E-value=0.011  Score=58.49  Aligned_cols=288  Identities=15%  Similarity=0.102  Sum_probs=140.3

Q ss_pred             ccCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCC---ce--e
Q 016368           30 ILLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNS---SM--E  101 (390)
Q Consensus        30 ~~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~--~  101 (390)
                      ....+..||.|+...||..|+   +..+++||+.|+.++.+................  +..... ......   ..  .
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ks  180 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLP--PKCEKG-LPLKSGFKGRPWKS  180 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCC--cccCcc-cccccccccchhhh
Confidence            345577899999999999999   999999999999999987644300000000000  000000 000000   00  0


Q ss_pred             EE-EEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          102 FF-CFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       102 ~~-~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      ++ ......+.|............ +...        ..+.+....++.++.+       .....+.+||..+..--..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~q~~~~~~~~~-------s~~~tl~~~~~~~~~~i~~~  244 (537)
T KOG0274|consen  181 FYRRRFRLSKNWRKLFRRGYKVLL-GTDD--------HVVLCLQLHDGFFKSG-------SDDSTLHLWDLNNGYLILTR  244 (537)
T ss_pred             hhhhhhhccccccccccccceeec-ccCc--------chhhhheeecCeEEec-------CCCceeEEeecccceEEEee
Confidence            00 011122344443322210000 0000        0001222223333332       12233456777666444332


Q ss_pred             CCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368          181 QLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN  259 (390)
Q Consensus       181 ~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g  259 (390)
                      .....-.-.++... ++.+++.|-.+.        ++.++|..++.    -..+-....      ....+......+.++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh~------stv~~~~~~~~~~~s  306 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGHT------SSVRCLTIDPFLLVS  306 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCCC------ceEEEEEccCceEee
Confidence            11111111222222 355555554443        67788877776    443322111      122223344444444


Q ss_pred             ccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEE
Q 016368          260 LKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITA  339 (390)
Q Consensus       260 g~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~  339 (390)
                        |.....+.++|.++..--.+-.    +...+..++.+++.+.|.|..++.|-+||+.+.+...  .+..+........
T Consensus       307 --gs~D~tVkVW~v~n~~~l~l~~----~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  307 --GSRDNTVKVWDVTNGACLNLLR----GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLI  378 (537)
T ss_pred             --ccCCceEEEEeccCcceEEEec----cccccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEE
Confidence              2234556788888655433322    1233333434788999999999999999999654433  3333322333335


Q ss_pred             ECC-EEEEEeeCCceEEEEEcCCC
Q 016368          340 ARG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       340 ~~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++ ..++-|+-+..|.+||+.+.
T Consensus       379 ~~~~~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  379 VDSENRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             ecCcceEEeeeeccceEeecCCch
Confidence            566 55555555677888888776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.62  E-value=0.018  Score=50.70  Aligned_cols=179  Identities=19%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             CcEEEeCCCC--ceecCCCCCCCCcceE--EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          165 SPLAFNPQSN--TWFFGPQLSIPRRWCA--MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       165 ~~~~~dp~t~--~W~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      .+..+|+.++  .|+.-  +........  .+..++.+|+..+         ...+.++|..+++.  .|+.-.+-+.  
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~--~W~~~~~~~~--   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKV--LWRFDLPGPI--   68 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEE--EEEEECSSCG--
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCE--EEEeeccccc--
Confidence            4667787766  46551  111122222  3346889998742         24789999988762  3776542221  


Q ss_pred             ccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeE-ecCCCCCCC-CCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          241 FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWK-EMPEGMHAG-WNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       241 ~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~-~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      .    ...+..++.+|+..    .......+|.+++  .|+ ......... .......+ .++.+|+ +..++.+..+|
T Consensus        69 ~----~~~~~~~~~v~v~~----~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~l~~~d  138 (238)
T PF13360_consen   69 S----GAPVVDGGRVYVGT----SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYV-GTSSGKLVALD  138 (238)
T ss_dssp             G----SGEEEETTEEEEEE----TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEE-EETCSEEEEEE
T ss_pred             c----ceeeeccccccccc----ceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEE-EeccCcEEEEe
Confidence            1    22467899999884    2336789997766  698 343311122 22333443 4555554 44477999999


Q ss_pred             CCCCc--eEEcccccccc--------cceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368          317 ADHDW--WDEVIELAELK--------GAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       317 ~~~~~--W~~i~~~p~~r--------~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~  370 (390)
                      +++.+  |+.-...+...        ....++..+|.||+....+. ++.+|..+... .|+..
T Consensus       139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~-~w~~~  200 (238)
T PF13360_consen  139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEK-LWSKP  200 (238)
T ss_dssp             TTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEE-EEEEC
T ss_pred             cCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCCE-EEEec
Confidence            98764  77644443211        12334445788888854443 55558887742 38644

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.43  E-value=0.046  Score=52.01  Aligned_cols=189  Identities=15%  Similarity=0.229  Sum_probs=104.3

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ceec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSN--TWFF-GPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      +.++.+++++.       ...++.+|+.++  .|+. ++..    ...+.++.++.+|+.+ .+        ..+..+|.
T Consensus        63 v~~~~v~v~~~-------~g~v~a~d~~tG~~~W~~~~~~~----~~~~p~v~~~~v~v~~-~~--------g~l~ald~  122 (377)
T TIGR03300        63 VAGGKVYAADA-------DGTVVALDAETGKRLWRVDLDER----LSGGVGADGGLVFVGT-EK--------GEVIALDA  122 (377)
T ss_pred             EECCEEEEECC-------CCeEEEEEccCCcEeeeecCCCC----cccceEEcCCEEEEEc-CC--------CEEEEEEC
Confidence            33555555532       246899998877  4764 2221    1123344577788643 22        37899999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCC-CCCceEEEee
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG-WNGPAASTMN  298 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~-~~~~~~~~~~  298 (390)
                      .+++.  .|+.-..  ...    ..+.+..++++|+..    ......++|.+++  .|+......... ....+.++ .
T Consensus       123 ~tG~~--~W~~~~~--~~~----~~~p~v~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~  189 (377)
T TIGR03300       123 EDGKE--LWRAKLS--SEV----LSPPLVANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A  189 (377)
T ss_pred             CCCcE--eeeeccC--cee----ecCCEEECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E
Confidence            87763  3874322  111    123344688888864    2344778998765  587643311111 11223333 5


Q ss_pred             CCeEEEEeCCCCcEEEEECCCC--ceEEccccccc-----c---cceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          299 EEELYVVNEGKGRLSKYDADHD--WWDEVIELAEL-----K---GAEKITAARGRVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~--~W~~i~~~p~~-----r---~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      ++.+ +++..++.+..+|+++.  .|+.-...+..     +   ........++.||+. ..+..++.+|+.+.. ..|.
T Consensus       190 ~~~v-~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG~-~~W~  266 (377)
T TIGR03300       190 DGGV-LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSGR-VLWK  266 (377)
T ss_pred             CCEE-EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCCc-EEEe
Confidence            6654 45656678999998765  47643211111     0   112234457788876 444578888886542 3576


Q ss_pred             e
Q 016368          369 V  369 (390)
Q Consensus       369 ~  369 (390)
                      .
T Consensus       267 ~  267 (377)
T TIGR03300       267 R  267 (377)
T ss_pred             e
Confidence            4

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13854 Kelch_5: Kelch motif

Probab=97.36  E-value=0.00053  Score=42.63  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             CCCCCCCceEEEeeCCeEEEEeCCCC-------cEEEEECCC
Q 016368          285 MHAGWNGPAASTMNEEELYVVNEGKG-------RLSKYDADH  319 (390)
Q Consensus       285 ~~~~~~~~~~~~~~~g~lyv~gg~~~-------~v~~yd~~~  319 (390)
                      +|.+|.++++++ .+++||++||..+       ++|+||..+
T Consensus         1 ~P~~R~~hs~~~-~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVV-VGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEE-ECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            367899999998 9999999999762       889998875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.27  E-value=0.04  Score=48.83  Aligned_cols=156  Identities=17%  Similarity=0.260  Sum_probs=100.0

Q ss_pred             EEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368          190 AMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG  268 (390)
Q Consensus       190 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~  268 (390)
                      +... .++.||.--|..+      ...+..||+.|++    =.....++...+   +-+++.+++++|.+.   .-...+
T Consensus        49 GL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~F---gEGit~~~d~l~qLT---Wk~~~~  112 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYF---GEGITILGDKLYQLT---WKEGTG  112 (264)
T ss_dssp             EEEEEETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT-----EEEEEEETTEEEEEE---SSSSEE
T ss_pred             cEEecCCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCcccc---ceeEEEECCEEEEEE---ecCCeE
Confidence            4445 4789999888764      3588899999998    566667776666   577888999999983   234556


Q ss_pred             EEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccc------ccceeEEEECC
Q 016368          269 AIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL------KGAEKITAARG  342 (390)
Q Consensus       269 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~------r~~~~~~~~~g  342 (390)
                      .+||..+  .+.+.. .+.+..+-+++. .+.+|++-.| +..++..||++  ++....+...      ..--.+..++|
T Consensus       113 f~yd~~t--l~~~~~-~~y~~EGWGLt~-dg~~Li~SDG-S~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i~G  185 (264)
T PF05096_consen  113 FVYDPNT--LKKIGT-FPYPGEGWGLTS-DGKRLIMSDG-SSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYING  185 (264)
T ss_dssp             EEEETTT--TEEEEE-EE-SSS--EEEE-CSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETT
T ss_pred             EEEcccc--ceEEEE-EecCCcceEEEc-CCCEEEEECC-ccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEEcC
Confidence            7999874  555554 444456778886 6677777776 66899999986  3333333222      12234666788


Q ss_pred             EEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          343 RVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      +||.--=..+.|..+|+.+.....|-
T Consensus       186 ~IyANVW~td~I~~Idp~tG~V~~~i  211 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGKVVGWI  211 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred             EEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence            88875444678999999887554454

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.20  E-value=0.056  Score=50.67  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=75.3

Q ss_pred             ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--C-----c
Q 016368          194 VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--A-----K  266 (390)
Q Consensus       194 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~-----~  266 (390)
                      .+.+|+.++..         ..+.+||..|..    =...|.+..+..   ...++.++++||++......  .     .
T Consensus        75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~---~pisv~VG~~LY~m~~~~~~~~~~~~~~~  138 (342)
T PF07893_consen   75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKR---CPISVSVGDKLYAMDRSPFPEPAGRPDFP  138 (342)
T ss_pred             cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCc---ceEEEEeCCeEEEeeccCccccccCccce
Confidence            48888888543         247899999998    666666665443   34455679999999643111  0     0


Q ss_pred             eeEE--EeC--------CCCCeEecCCCCCCCCCC-------ceEEEee-CCeEEE-EeCCCCcEEEEECCCCceEEcc-
Q 016368          267 DGAI--YNV--------ELDKWKEMPEGMHAGWNG-------PAASTMN-EEELYV-VNEGKGRLSKYDADHDWWDEVI-  326 (390)
Q Consensus       267 ~~~~--yd~--------~~~~W~~~~~~~~~~~~~-------~~~~~~~-~g~lyv-~gg~~~~v~~yd~~~~~W~~i~-  326 (390)
                      ..++  |+.        ..-.|+.+++ +|.....       .+.++ + +..|+| +.+.....+.||.++.+|++++ 
T Consensus       139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYav-v~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAV-VDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD  216 (342)
T ss_pred             eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEE-ecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence            3343  442        2236888877 4444332       23344 6 667777 3332235799999999999998 


Q ss_pred             -ccccc
Q 016368          327 -ELAEL  331 (390)
Q Consensus       327 -~~p~~  331 (390)
                       .||..
T Consensus       217 W~LPF~  222 (342)
T PF07893_consen  217 WMLPFH  222 (342)
T ss_pred             eecCcC
Confidence             46644

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.00  E-value=0.048  Score=51.40  Aligned_cols=263  Identities=11%  Similarity=0.034  Sum_probs=139.6

Q ss_pred             CCCCcHHHHHHHHhcCC--chhhHhhhH---hHHHhhcCCCCCCcccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCC
Q 016368           34 LPGLPNHLADRCLSSLP--PALLFSVCH---SWRRLLYSPYFPPFFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPI  108 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP--l~~~r~Vck---~W~~l~~s~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  108 (390)
                      -|.=|.|.+.-.-.|+-  -..-+.|.|   ||+..++|-.|....-|++++..                +-.+.+||..
T Consensus        35 sp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~----------------sG~V~vfD~k   98 (487)
T KOG0310|consen   35 SPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE----------------SGHVKVFDMK   98 (487)
T ss_pred             CCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC----------------cCcEEEeccc
Confidence            35568888888888887  333445555   78888999888877777776533                2357889955


Q ss_pred             CCCceeC-CCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee-cCCCCCCCC
Q 016368          109 SSTWNPL-PAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF-FGPQLSIPR  186 (390)
Q Consensus       109 ~~~W~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~-~~~~~~~~r  186 (390)
                      ++.-.+. .....  +.+..             .....++.++..|+- .      .-+-.||..+..-. .+.......
T Consensus        99 ~r~iLR~~~ah~a--pv~~~-------------~f~~~d~t~l~s~sD-d------~v~k~~d~s~a~v~~~l~~htDYV  156 (487)
T KOG0310|consen   99 SRVILRQLYAHQA--PVHVT-------------KFSPQDNTMLVSGSD-D------KVVKYWDLSTAYVQAELSGHTDYV  156 (487)
T ss_pred             cHHHHHHHhhccC--ceeEE-------------EecccCCeEEEecCC-C------ceEEEEEcCCcEEEEEecCCccee
Confidence            5322221 11111  11100             122234445544432 1      12333444444321 111111111


Q ss_pred             cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCc
Q 016368          187 RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAK  266 (390)
Q Consensus       187 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~  266 (390)
                      -..++...++.|++.||+++        .+-.||..+.+.   |..--+-..+..    --.+.-+|.+.+..    ++.
T Consensus       157 R~g~~~~~~~hivvtGsYDg--------~vrl~DtR~~~~---~v~elnhg~pVe----~vl~lpsgs~iasA----gGn  217 (487)
T KOG0310|consen  157 RCGDISPANDHIVVTGSYDG--------KVRLWDTRSLTS---RVVELNHGCPVE----SVLALPSGSLIASA----GGN  217 (487)
T ss_pred             EeeccccCCCeEEEecCCCc--------eEEEEEeccCCc---eeEEecCCCcee----eEEEcCCCCEEEEc----CCC
Confidence            11122334778999999987        778899988741   433222222211    22222344555543    677


Q ss_pred             eeEEEeCCCCCeEecCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEE
Q 016368          267 DGAIYNVELDKWKEMPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRV  344 (390)
Q Consensus       267 ~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l  344 (390)
                      .+.++|+.++. +.+.. +. ......++...-++.=.+-||-++.+-+||  +..|+.+..+..+-.--++.+. ++.-
T Consensus       218 ~vkVWDl~~G~-qll~~-~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t  293 (487)
T KOG0310|consen  218 SVKVWDLTTGG-QLLTS-MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQT  293 (487)
T ss_pred             eEEEEEecCCc-eehhh-hhcccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceeeEEecCCCce
Confidence            78899998654 22222 22 222222333223556677788899999999  5568888866544333445554 6777


Q ss_pred             EEEeeCCceEEEE
Q 016368          345 CAVCENGERIMVV  357 (390)
Q Consensus       345 ~i~g~~~~~v~~~  357 (390)
                      .++|..+.-+..-
T Consensus       294 ~viGmsnGlv~~r  306 (487)
T KOG0310|consen  294 VVIGMSNGLVSIR  306 (487)
T ss_pred             EEEecccceeeee
Confidence            7776544444333

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.96  E-value=0.18  Score=44.54  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=91.4

Q ss_pred             EEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC-CCccccce
Q 016368          168 AFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD-GRFSREAV  246 (390)
Q Consensus       168 ~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~-~~~~r~~~  246 (390)
                      +.||.++.-+.-+...-.--+-.++.-+|.+|+..=..        +.+-..|+.+..    =+.++.... ....|.  
T Consensus       172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag--------naiaridp~~~~----aev~p~P~~~~~gsRr--  237 (353)
T COG4257         172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG--------NAIARIDPFAGH----AEVVPQPNALKAGSRR--  237 (353)
T ss_pred             ecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc--------cceEEcccccCC----cceecCCCcccccccc--
Confidence            56777775554333222222233444588888763222        345567777766    344433221 111111  


Q ss_pred             EEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368          247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI  326 (390)
Q Consensus       247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~  326 (390)
                      .-+---|++++.   ..+......||+....|.+-+. +...-...++-|.-.|++++-.-..+.+.+||+++.++++++
T Consensus       238 iwsdpig~~wit---twg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p  313 (353)
T COG4257         238 IWSDPIGRAWIT---TWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP  313 (353)
T ss_pred             cccCccCcEEEe---ccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence            111234566665   2345567799999999999776 333333345554356788877767789999999999998886


Q ss_pred             cccccccceeEEEECCEEEEE
Q 016368          327 ELAELKGAEKITAARGRVCAV  347 (390)
Q Consensus       327 ~~p~~r~~~~~~~~~g~l~i~  347 (390)
                      .-.+.-....|-...|++..-
T Consensus       314 ~pr~n~gn~ql~gr~ge~W~~  334 (353)
T COG4257         314 IPRPNSGNIQLDGRPGELWFT  334 (353)
T ss_pred             CCCCCCCceeccCCCCceeec
Confidence            332222333344445555554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.91  E-value=0.054  Score=48.18  Aligned_cols=179  Identities=21%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             CCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ....++++++.+++-..+....    -.+++..  ++++|+....          ...++|+.++.    ++.+...+..
T Consensus        20 ~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~----~~~~~~~~~~   81 (246)
T PF08450_consen   20 PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGK----VTVLADLPDG   81 (246)
T ss_dssp             TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT----------CEEEEETTTTE----EEEEEEEETT
T ss_pred             CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC----------ceEEEecCCCc----EEEEeeccCC
Confidence            3468999999998765432221    2334444  6888887532          34667999998    8887766321


Q ss_pred             --CccccceEEEEECCEEEEEcccCC---CC--ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCc
Q 016368          240 --RFSREAVEAVGFKGNLCMVNLKGN---GA--KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGR  311 (390)
Q Consensus       240 --~~~r~~~~~~~~~g~lyv~gg~g~---~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~  311 (390)
                        ...+..-.++--+|.+|+-.-...   ..  ..+.++++. .+.+.+...+..+   -+++...++ .||+.....+.
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETTTTE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccccce
Confidence              111111223335888888632111   11  235677777 5555544322111   234432455 58888888889


Q ss_pred             EEEEECCCCc--eEE---cccccccc-cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          312 LSKYDADHDW--WDE---VIELAELK-GAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~--W~~---i~~~p~~r-~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |++||.....  +..   +..++... ..-++++- +|.||+..-.+..|+++|+...
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~  215 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK  215 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence            9999986433  332   22223222 23456554 7899998777889999998855

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.81  E-value=0.056  Score=50.94  Aligned_cols=177  Identities=14%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             CCcEEEeCCCCceec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      -.+-+|+..+.+-.+ +..+. .-.+....--+|+|..+|+..+        -+.+||.++..      .+-.+.....+
T Consensus        48 ~rvqly~~~~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~------iLR~~~ah~ap  112 (487)
T KOG0310|consen   48 VRVQLYSSVTRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRV------ILRQLYAHQAP  112 (487)
T ss_pred             cEEEEEecchhhhhhhHHhhc-cceeEEEeecCCeEEEccCCcC--------cEEEeccccHH------HHHHHhhccCc
Confidence            356667766554333 22211 0111222233799999998776        67889966533      12222111110


Q ss_pred             ccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      -...--...++.+++.|   .+......+|..+..=+ ++..  ....-....+...+++|++-||.++.+..||..+..
T Consensus       113 v~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a~v~~~l~~--htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~  187 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTAYVQAELSG--HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT  187 (487)
T ss_pred             eeEEEecccCCeEEEec---CCCceEEEEEcCCcEEEEEecC--CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence            00011122578888884   23444557777766522 1111  111122233324789999999999999999998774


Q ss_pred             eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       ..+.++....-.-.+..+ .|.+.+- .+|+.|-+||+-++
T Consensus       188 -~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G  227 (487)
T KOG0310|consen  188 -SRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG  227 (487)
T ss_pred             -ceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence             333333322221233344 4455554 66778888888753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.81  E-value=0.079  Score=49.24  Aligned_cols=137  Identities=11%  Similarity=0.092  Sum_probs=87.5

Q ss_pred             CeEEEEECCCCc-cccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC-eEecCCCCCCCCCC
Q 016368          214 RSMKKWDLKSDR-EDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEGMHAGWNG  291 (390)
Q Consensus       214 ~~~~~yd~~t~~-~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~  291 (390)
                      -.+.+|+..... ...+.+.+......-.   ..+.+.++|++.+.     .+....+|+...++ +..... ...+-..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~---V~ai~~~~~~lv~~-----~g~~l~v~~l~~~~~l~~~~~-~~~~~~i  132 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGP---VTAICSFNGRLVVA-----VGNKLYVYDLDNSKTLLKKAF-YDSPFYI  132 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS----EEEEEEETTEEEEE-----ETTEEEEEEEETTSSEEEEEE-E-BSSSE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCc---ceEhhhhCCEEEEe-----ecCEEEEEEccCcccchhhhe-ecceEEE
Confidence            568899998841 0111666655433322   37778889995555     56778899998888 777765 4444444


Q ss_pred             ceEEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368          292 PAASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       292 ~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .++.+ .++.|++-....+ .++.|+.+..+-..++.-..++...++..+ ++..++++....+++++...
T Consensus       133 ~sl~~-~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  133 TSLSV-FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEE-ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEec-cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            55555 7887776665555 677889877778888876666666666666 65666665556677666554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.76  E-value=0.35  Score=43.72  Aligned_cols=172  Identities=14%  Similarity=0.102  Sum_probs=82.7

Q ss_pred             CCcEEEeCCCCceecCCCC-CCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQL-SIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~-~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      +.+.+||+.+++-...-.. ..++   +++.. ++ .+|+.++.+        ..+.+||..+..    ....-......
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~   75 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPDP   75 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCCc
Confidence            4678888877653222111 1111   22222 33 577776543        368899998877    43321111111


Q ss_pred             ccccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECC
Q 016368          241 FSREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDAD  318 (390)
Q Consensus       241 ~~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~  318 (390)
                          ...++.-++ .+|+.+   .......+||+.+.+-.  .. .+.+.....++...+|.+++++..++ .+..||..
T Consensus        76 ----~~~~~~~~g~~l~~~~---~~~~~l~~~d~~~~~~~--~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        76 ----ELFALHPNGKILYIAN---EDDNLVTVIDIETRKVL--AE-IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             ----cEEEECCCCCEEEEEc---CCCCeEEEEECCCCeEE--eE-eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence                121222244 466653   12345778998875321  11 11111112333325788887776544 46677877


Q ss_pred             CCceEEcccccccccceeEE-EECCE-EEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKIT-AARGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~-~~~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+-.  ..++.......+. ..+++ +++-+..++.+.+||+.+.
T Consensus       146 ~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       146 TYEIV--DNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             CCeEE--EEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            64322  2111111111222 22444 4444334667888988764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.70  E-value=0.063  Score=50.38  Aligned_cols=151  Identities=9%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE-EEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~  273 (390)
                      .-.|.+.+|.+.      .-.++..|-++|.      .+.++....++-. .+...-+|. ..+.+|   ..+-...||+
T Consensus       224 ~~plllvaG~d~------~lrifqvDGk~N~------~lqS~~l~~fPi~-~a~f~p~G~~~i~~s~---rrky~ysyDl  287 (514)
T KOG2055|consen  224 TAPLLLVAGLDG------TLRIFQVDGKVNP------KLQSIHLEKFPIQ-KAEFAPNGHSVIFTSG---RRKYLYSYDL  287 (514)
T ss_pred             CCceEEEecCCC------cEEEEEecCccCh------hheeeeeccCccc-eeeecCCCceEEEecc---cceEEEEeec
Confidence            345888888875      1244444555554      4555443332211 222223555 444431   2344679999


Q ss_pred             CCCCeEecCCCCCCC--CCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC
Q 016368          274 ELDKWKEMPEGMHAG--WNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG  351 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~  351 (390)
                      ++.+-+.+.++-...  -....-+. .++...++.|..|.|......|+.|----.++..-..+.+...+.+|++. ++.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~  365 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGT  365 (514)
T ss_pred             cccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCC
Confidence            999988877632111  11222233 77888888888999999988888885544444333444444445556666 444


Q ss_pred             ceEEEEEcCCCC
Q 016368          352 ERIMVVDVLASP  363 (390)
Q Consensus       352 ~~v~~~d~~~~~  363 (390)
                      ..||+||+....
T Consensus       366 GeV~v~nl~~~~  377 (514)
T KOG2055|consen  366 GEVYVWNLRQNS  377 (514)
T ss_pred             ceEEEEecCCcc
Confidence            499999998873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.63  E-value=0.11  Score=46.06  Aligned_cols=206  Identities=15%  Similarity=0.119  Sum_probs=107.7

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      -.++.+|+.++.-..+... . +.                 .++.. .++.+++...        ....++|+.+++++.
T Consensus        22 ~~i~~~~~~~~~~~~~~~~-~-~~-----------------G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~   74 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVIDLP-G-PN-----------------GMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV   74 (246)
T ss_dssp             TEEEEEETTTTEEEEEESS-S-EE-----------------EEEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCeEEEEecC-C-Cc-----------------eEEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence            4678888887765443211 1 11                 33333 3455555432        345677999999987


Q ss_pred             CCCCCC---CCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-CCCCCccccceEEEEE-
Q 016368          179 GPQLSI---PRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAVGF-  251 (390)
Q Consensus       179 ~~~~~~---~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~~~-  251 (390)
                      +...+.   +.....-.+  -+|.||+..-............++++++. ++    .+.+.. +..      ..+.+.. 
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~------pNGi~~s~  143 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGF------PNGIAFSP  143 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESS------EEEEEEET
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCccc------ccceEECC
Confidence            765531   233332223  37888886433221001111578899998 55    444432 222      1344433 


Q ss_pred             CC-EEEEEcccCCCCceeEEEeCCCC--CeEecCC--CCCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEc
Q 016368          252 KG-NLCMVNLKGNGAKDGAIYNVELD--KWKEMPE--GMHAGW-NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEV  325 (390)
Q Consensus       252 ~g-~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~--~~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i  325 (390)
                      ++ .+|+.   ......+..|+....  ++.....  ..+... .--++++..+|.||+.....+.|++||++...-..+
T Consensus       144 dg~~lyv~---ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  144 DGKTLYVA---DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             TSSEEEEE---ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEE
T ss_pred             cchheeec---ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEE
Confidence            44 57776   234556778887543  3432211  011211 123455545799999877778999999995545545


Q ss_pred             ccccccccceeEEEE---CCEEEEEe
Q 016368          326 IELAELKGAEKITAA---RGRVCAVC  348 (390)
Q Consensus       326 ~~~p~~r~~~~~~~~---~g~l~i~g  348 (390)
                      . +|.. ....++.-   .+.|||..
T Consensus       221 ~-~p~~-~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  221 E-LPVP-RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             E--SSS-SEEEEEEESTTSSEEEEEE
T ss_pred             c-CCCC-CEEEEEEECCCCCEEEEEe
Confidence            4 5533 22223332   35688763

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.55  E-value=0.57  Score=42.31  Aligned_cols=174  Identities=12%  Similarity=0.060  Sum_probs=82.8

Q ss_pred             CCcEEEeCCCCceec-CCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSV-G-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      +.+.+||..+++... ++....+   ...+.. + +.+|+.++.+        ..+.+||+.+..      .+..++...
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~------~~~~~~~~~  115 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD--------NLVTVIDIETRK------VLAEIPVGV  115 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC--------CeEEEEECCCCe------EEeEeeCCC
Confidence            468899998876643 3221111   122222 3 4566654332        378899998765      122221111


Q ss_pred             ccccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCCcEEEEECC
Q 016368          241 FSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKGRLSKYDAD  318 (390)
Q Consensus       241 ~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~yd~~  318 (390)
                      .   ..+++ .-+|++++++..  .......||..+.+-..... . ..... .+....+++.+++++ .++.+..||.+
T Consensus       116 ~---~~~~~~~~dg~~l~~~~~--~~~~~~~~d~~~~~~~~~~~-~-~~~~~-~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       116 E---PEGMAVSPDGKIVVNTSE--TTNMAHFIDTKTYEIVDNVL-V-DQRPR-FAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             C---cceEEECCCCCEEEEEec--CCCeEEEEeCCCCeEEEEEE-c-CCCcc-EEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence            1   12222 246666666411  12234567876654322111 1 11111 222225666554544 46789999998


Q ss_pred             CCceE-Ecc-ccc----ccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWD-EVI-ELA----ELKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~-~i~-~~p----~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+.. .+. ..+    ......++... ++ .+|+..+..+.+.+||+.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            76432 121 000    11112233332 34 45654455567888988654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.39  E-value=1.3  Score=48.22  Aligned_cols=153  Identities=9%  Similarity=0.080  Sum_probs=88.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC----------CCCCccccceEEEEE-C-CEEEEEcccC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL----------KDGRFSREAVEAVGF-K-GNLCMVNLKG  262 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~----------~~~~~~r~~~~~~~~-~-g~lyv~gg~g  262 (390)
                      ++.|||....+        +.+++||+.++.    ...+..-          .....-....++++. + +.||+.   .
T Consensus       694 ~g~LyVad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA---D  758 (1057)
T PLN02919        694 NEKVYIAMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA---D  758 (1057)
T ss_pred             CCeEEEEECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE---E
Confidence            67899875433        368888887765    4332110          000000001233333 3 359988   3


Q ss_pred             CCCceeEEEeCCCCCeEecC--C-----C---CCC---------CCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE
Q 016368          263 NGAKDGAIYNVELDKWKEMP--E-----G---MHA---------GWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD  323 (390)
Q Consensus       263 ~~~~~~~~yd~~~~~W~~~~--~-----~---~~~---------~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~  323 (390)
                      .+.+.+.+||+.++.-..+.  .     .   ...         ...-.++++..+|.|||....++.|.+||+++....
T Consensus       759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            34567889998876532211  0     0   000         001123333367899999988889999999988776


Q ss_pred             Ecccccc------------cccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          324 EVIELAE------------LKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       324 ~i~~~p~------------~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+.....            .....++++. +|+|||.-..++.|.++|+.+.
T Consensus       839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            5542211            1123455554 7889998777788999998775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0035  Score=55.87  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             CCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368           32 LLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY   69 (390)
Q Consensus        32 ~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~   69 (390)
                      ..|-.||||+++.||+.||   +.++..|||||+++.++..
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            3367899999999999999   8888899999999988865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.35  E-value=0.092  Score=46.59  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=75.2

Q ss_pred             eEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE
Q 016368          246 VEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE  324 (390)
Q Consensus       246 ~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~  324 (390)
                      .+... .+|.+|--.|. +|......||+++++-..... ++....+-+++. .+++||.+--.++..++||.++  .++
T Consensus        48 QGL~~~~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~t--l~~  122 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGL-YGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNT--LKK  122 (264)
T ss_dssp             EEEEEEETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE--TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTT--TEE
T ss_pred             ccEEecCCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEE-CCccccceeEEE-ECCEEEEEEecCCeEEEEcccc--ceE
Confidence            34444 57888876432 234566799999998766555 666777888887 9999999999999999999985  677


Q ss_pred             cccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       325 i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+.+-+..+-+++.-+ +-++++.+...++.+|+.+-
T Consensus       123 ~~~~~y~~EGWGLt~dg-~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  123 IGTFPYPGEGWGLTSDG-KRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEEEE-SSS--EEEECS-SCEEEE-SSSEEEEE-TTT-
T ss_pred             EEEEecCCcceEEEcCC-CEEEEECCccceEEECCccc
Confidence            77666556667787444 44555455678999998763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.24  E-value=0.75  Score=40.41  Aligned_cols=173  Identities=10%  Similarity=0.089  Sum_probs=81.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.+||..+++-...  ........ .+... +++.+++++.+.        .+.+||..++.    -...-...... 
T Consensus        31 g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~--------~i~i~~~~~~~----~~~~~~~~~~~-   95 (289)
T cd00200          31 GTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSDK--------TIRLWDLETGE----CVRTLTGHTSY-   95 (289)
T ss_pred             cEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCCC--------eEEEEEcCccc----ceEEEeccCCc-
Confidence            4678888876642111  11111111 22222 444555655543        78889988754    22111111111 


Q ss_pred             cccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                         ..++... ++++++.++   ......+||+.+.+-.. +..   .......+....++.+++.+..++.+..||..+
T Consensus        96 ---i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200          96 ---VSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             ---EEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence               1223322 345666541   13456789887543222 221   111112233213356666665588999999874


Q ss_pred             CceEEcccccccc-cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELK-GAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r-~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+  .+..+.... ....+... +++.+++++.+..+.+||+...
T Consensus       167 ~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         167 GK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             cc--cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            33  222222222 12233333 4435555555778999998753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.98  E-value=0.62  Score=43.98  Aligned_cols=195  Identities=10%  Similarity=0.012  Sum_probs=99.5

Q ss_pred             EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .+....+.|+++|.      -...+++|...++.--.+- +..-+.--+.... ++..++-||.++        .+.+|+
T Consensus        87 l~s~n~G~~l~ag~------i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg--------~V~vW~  151 (476)
T KOG0646|consen   87 LASSNLGYFLLAGT------ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG--------AVLVWL  151 (476)
T ss_pred             eecCCCceEEEeec------ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc--------cEEEEE
Confidence            33445577777774      2357999999888543322 1111111122222 677777777765        556654


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEE---------ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVG---------FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG  291 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~---------~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  291 (390)
                      ..+-...  =..-...|...+.  .|+..+         .+.++|-.+    -.+..-+||+..+.--.  . ...+..-
T Consensus       152 l~~lv~a--~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS----~D~t~k~wdlS~g~LLl--t-i~fp~si  220 (476)
T KOG0646|consen  152 LTDLVSA--DNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTAS----EDRTIKLWDLSLGVLLL--T-ITFPSSI  220 (476)
T ss_pred             EEeeccc--ccCCCccceeeec--cCcceeEEEEecCCCccceEEEec----CCceEEEEEeccceeeE--E-EecCCcc
Confidence            4221100  0000001111110  122221         244555553    34455678877663221  1 2233333


Q ss_pred             ceEEEeeCCeEEEEeCCCCcEEEEECCCCc-e-------------EEccccccccc--ceeEEEE--CCEEEEEeeCCce
Q 016368          292 PAASTMNEEELYVVNEGKGRLSKYDADHDW-W-------------DEVIELAELKG--AEKITAA--RGRVCAVCENGER  353 (390)
Q Consensus       292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~-W-------------~~i~~~p~~r~--~~~~~~~--~g~l~i~g~~~~~  353 (390)
                      .++++...++.+.+|+.+|.++..+...-. -             +++..+...+.  ..+|.++  +|.+.+.|..++.
T Consensus       221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence            444443567777788888888877665321 0             01111112222  4444443  8999999888889


Q ss_pred             EEEEEcCCC
Q 016368          354 IMVVDVLAS  362 (390)
Q Consensus       354 v~~~d~~~~  362 (390)
                      |-+||+...
T Consensus       301 VcvWdi~S~  309 (476)
T KOG0646|consen  301 VCVWDIYSK  309 (476)
T ss_pred             EEEEecchH
Confidence            999999875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.97  E-value=1.4  Score=41.02  Aligned_cols=179  Identities=11%  Similarity=0.030  Sum_probs=89.2

Q ss_pred             CCcEEEeCCC-CceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECC-CCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQS-NTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLK-SDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t-~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~~~~~W~~~~~~~~~  239 (390)
                      +.+.+|+..+ ++++.+...+..-..+.++.- ++ .||+.+..        ...+.+|+.. ++.    ++.+...+..
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~~g~----l~~~~~~~~~   79 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIADDGA----LTFAAESPLP   79 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--------CCcEEEEEECCCCc----eEEeeeecCC
Confidence            5778888754 466655444332222223222 34 56775432        1366777775 445    6655443322


Q ss_pred             CccccceEEEE-ECCE-EEEEcccCCCCceeEEEeCCCCC-e-EecCCCCCCCCCCceEEEeeC-CeEEEEeCCCCcEEE
Q 016368          240 RFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNVELDK-W-KEMPEGMHAGWNGPAASTMNE-EELYVVNEGKGRLSK  314 (390)
Q Consensus       240 ~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~~~~~-W-~~~~~~~~~~~~~~~~~~~~~-g~lyv~gg~~~~v~~  314 (390)
                      ..   ...++. -+++ +|+.+   .+...+.+||++++. - ..+.. .+.....+.++...+ ..+|+....++.+.+
T Consensus        80 ~~---p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         80 GS---PTHISTDHQGRFLFSAS---YNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             CC---ceEEEECCCCCEEEEEE---cCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            11   122332 3454 66652   234556788886431 1 11221 111112233333134 467777767789999


Q ss_pred             EECCCCc-eEEcc----cccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          315 YDADHDW-WDEVI----ELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       315 yd~~~~~-W~~i~----~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ||..++. .....    ..+.......++..  +..+|+.....+.+.+||+..
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            9987632 22110    11112222334444  346778766677899998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.89  E-value=0.49  Score=44.64  Aligned_cols=183  Identities=11%  Similarity=0.120  Sum_probs=96.0

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC---cceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCC
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR---RWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r---~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      .+++++|...     .-.++..|-.+|.  .+..+...+   .....+ -+|. ..+++|..        .-+++||.++
T Consensus       226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~-p~G~~~i~~s~rr--------ky~ysyDle~  289 (514)
T KOG2055|consen  226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFA-PNGHSVIFTSGRR--------KYLYSYDLET  289 (514)
T ss_pred             ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeec-CCCceEEEecccc--------eEEEEeeccc
Confidence            4677776633     2356666777764  443333222   211222 2454 66665543        3678999999


Q ss_pred             CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCce--eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD--GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE  301 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~--~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~  301 (390)
                      .+    -+++.++..-...-...-.+..++.+.++     .++.  +......|+.|..--. + .+........ -+++
T Consensus       290 ak----~~k~~~~~g~e~~~~e~FeVShd~~fia~-----~G~~G~I~lLhakT~eli~s~K-i-eG~v~~~~fs-Sdsk  357 (514)
T KOG2055|consen  290 AK----VTKLKPPYGVEEKSMERFEVSHDSNFIAI-----AGNNGHIHLLHAKTKELITSFK-I-EGVVSDFTFS-SDSK  357 (514)
T ss_pred             cc----cccccCCCCcccchhheeEecCCCCeEEE-----cccCceEEeehhhhhhhhheee-e-ccEEeeEEEe-cCCc
Confidence            88    77776643211000012233355555555     2333  3455666777654322 2 2222222222 5666


Q ss_pred             EEEEeCCCCcEEEEECCCCc----eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368          302 LYVVNEGKGRLSKYDADHDW----WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       302 lyv~gg~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..++-|..|.||+||..++.    |..-+.+   ....-|...++..+.+|...+-|-+||-.+
T Consensus       358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---HGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EEEEEcCCceEEEEecCCcceEEEEeecCcc---ceeeeeecCCCceEEeccCcceEEEeccch
Confidence            66665567799999999874    3332221   112224445788777876666666777433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=95.83  E-value=1.2  Score=39.15  Aligned_cols=173  Identities=11%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             CCcEEEeCCCCceecCCCCCCCC-cceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPR-RWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++...  .+.... .-.++... ++++++.++.+.        .+.+||..+...   -..+.....  .
T Consensus        73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~--~  137 (289)
T cd00200          73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTD--W  137 (289)
T ss_pred             CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCC--c
Confidence            578888987752211  111111 11222222 346666665332        688899886541   122221111  1


Q ss_pred             cccceEEEEEC-CEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVGFK-GNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~~~-g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                         ..++.... +.+++.+.   ....+.+||..+.+- .....   .......+....++..+++++.++.+..||..+
T Consensus       138 ---i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         138 ---VNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ---EEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence               12333333 45555531   134567888864431 11111   111122333224555666777788999999876


Q ss_pred             CceEEcccccccc-cceeEEEEC-CEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELK-GAEKITAAR-GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r-~~~~~~~~~-g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..-  +..+.... ....+.... +.+++.+..+..+.+||+.+.
T Consensus       209 ~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         209 GKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             Cce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            433  22221111 223333333 556665454778999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.74  E-value=1.8  Score=40.64  Aligned_cols=234  Identities=17%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeC--CCC
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNP--QSN  174 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp--~t~  174 (390)
                      ......+.||..++++..+........       |++       -++...++++|+.....   .....+..|..  .++
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~-------Ps~-------l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEGEN-------PSW-------LAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEESSS-------ECC-------EEE-TTSSEEEEEETTS---STTTEEEEEEEETTTT
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCCCC-------Cce-------EEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcc
Confidence            345667788889999887664322111       111       22223555555554321   12345555554  446


Q ss_pred             ceecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-------CCC--CCcc
Q 016368          175 TWFFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-------LKD--GRFS  242 (390)
Q Consensus       175 ~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-------~~~--~~~~  242 (390)
                      +.+.+...+..-...+...+   +..||+.--..        ..+.+|+...+..   =.....       -+.  ....
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~  143 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEG  143 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSS
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccCCcc---cceeeeecccCCCCCccccccc
Confidence            77777665533333333444   44566654222        3677888776420   111110       011  0111


Q ss_pred             ccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCC--eEecCCC-CCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          243 REAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDK--WKEMPEG-MHAGW-NGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       243 r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~-~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      ...|.+... +| .+|+.   ..+...+.+|+...+.  ....... .+.+. ..+.+...-+..+||+...++.+.+|+
T Consensus       144 ~h~H~v~~~pdg~~v~v~---dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVP---DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEE---ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccceeEEECCCCCEEEEE---ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            113555544 34 57776   3455677888887665  6543221 11211 122333212357899988888666665


Q ss_pred             CC--CCceEEccc---ccccc----cceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          317 AD--HDWWDEVIE---LAELK----GAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       317 ~~--~~~W~~i~~---~p~~r----~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..  +..++.+..   +|...    ....+...  +..||+-..+.+.|.+|++..
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            55  666766553   33211    23445454  445788766777899999843

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.73  E-value=0.27  Score=44.73  Aligned_cols=109  Identities=16%  Similarity=0.172  Sum_probs=71.3

Q ss_pred             ceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE
Q 016368          245 AVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE  324 (390)
Q Consensus       245 ~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~  324 (390)
                      +.-++.+++| |++.  ..+..+..+++..+..+...-.   ....+.++. .++|++.|-|..++.+..||.+.+.--.
T Consensus       322 aVNvVdfd~k-yIVs--ASgDRTikvW~~st~efvRtl~---gHkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  322 AVNVVDFDDK-YIVS--ASGDRTIKVWSTSTCEFVRTLN---GHKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLR  394 (499)
T ss_pred             heeeeccccc-eEEE--ecCCceEEEEeccceeeehhhh---cccccceeh-hccCeEEEecCCCceEEEEeccccHHHH
Confidence            3456667888 5553  2345677788888877655433   222333333 3899999999999999999999876544


Q ss_pred             cccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          325 VIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       325 i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +-+-.  -.-.-+.-++++-.|-|+-++.|-+||....
T Consensus       395 vLeGH--EeLvRciRFd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  395 VLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             HHhch--HHhhhheeecCceeeeccccceEEEEecccc
Confidence            43211  1112366677777777666778888887664

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.71  E-value=1.8  Score=40.29  Aligned_cols=195  Identities=13%  Similarity=0.067  Sum_probs=92.7

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCC-CCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQ-SNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~-t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      +++.+++++.      ..+.+.+|+.. +++++.+...+.+..-+.++.. ++ .||+..-.        ...+.+||..
T Consensus        45 d~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~  110 (330)
T PRK11028         45 DKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLD  110 (330)
T ss_pred             CCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEEC
Confidence            4556666543      22567777775 4566544433322221222222 44 46665422        2477788886


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCC-CeEecCC---CCCCCCCCceEEE
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELD-KWKEMPE---GMHAGWNGPAAST  296 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~---~~~~~~~~~~~~~  296 (390)
                      ++...  .+.+...+....   .+.+++. ++ .+|+.   +.+...+.+||..+. .......   ..+.+.....++.
T Consensus       111 ~~g~~--~~~~~~~~~~~~---~~~~~~~p~g~~l~v~---~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        111 KDGIP--VAPIQIIEGLEG---CHSANIDPDNRTLWVP---CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             CCCCC--CCceeeccCCCc---ccEeEeCCCCCEEEEe---eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            43200  122222221111   2444433 44 56666   334566889998763 3221100   0111111112332


Q ss_pred             eeC-CeEEEEeCCCCcEEEEECC--CCceEEcc---cccc----cccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368          297 MNE-EELYVVNEGKGRLSKYDAD--HDWWDEVI---ELAE----LKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       297 ~~~-g~lyv~gg~~~~v~~yd~~--~~~W~~i~---~~p~----~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..+ ..+|+....++.+.+||..  +.+.+.+.   .+|.    ++....+... +| .+|+.....+.+.+||+...
T Consensus       183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            133 3577776667788777775  44554443   2322    2222223333 34 57776455668888887543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.71  E-value=2.1  Score=41.17  Aligned_cols=145  Identities=10%  Similarity=-0.007  Sum_probs=79.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|..+++...+..........+ ..-++ .|++.....      ....++.+|..++.    .+.+........ 
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~------~~~~i~~~d~~~~~----~~~l~~~~~~~~-  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKD------GNPDIYVMDLDGKQ----LTRLTNGPGIDT-  281 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCC------CCccEEEEECCCCC----EEECCCCCCCCC-
Confidence            579999999887666554332222211 12244 465544322      22478999999887    666654322111 


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC---cEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG---RLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~---~v~~yd~~  318 (390)
                         .....-+|+ |++.... .+...+.++|..+..++.+.. .  ...........+|+.+++....+   .++.+|..
T Consensus       282 ---~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~-~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       282 ---EPSWSPDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTF-R--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ---CEEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec-C--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence               111223554 5444311 123467788888888776654 1  11212222225666666655433   89999999


Q ss_pred             CCceEEccc
Q 016368          319 HDWWDEVIE  327 (390)
Q Consensus       319 ~~~W~~i~~  327 (390)
                      +..++.+..
T Consensus       355 ~~~~~~l~~  363 (417)
T TIGR02800       355 GGGERVLTD  363 (417)
T ss_pred             CCCeEEccC
Confidence            877766653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.53  E-value=1.5  Score=40.28  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=86.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +..+.+.||.++        ..++++..++.    |-- +..-....    -.....++|.+...|+   -...+.+|+.
T Consensus        75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDSV----t~~~FshdgtlLATGd---msG~v~v~~~  135 (399)
T KOG0296|consen   75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDSV----TCCSFSHDGTLLATGD---MSGKVLVFKV  135 (399)
T ss_pred             CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCce----EEEEEccCceEEEecC---CCccEEEEEc
Confidence            567788888775        67889998888    642 22111111    1334456777777741   1233567776


Q ss_pred             CCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC
Q 016368          274 ELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG  351 (390)
Q Consensus       274 ~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~  351 (390)
                      .++  +|......-...+    +..=..+.+++.|..++.+|+|......-.++-.-+..+...+...-+|+..+.|..+
T Consensus       136 stg~~~~~~~~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             ccCceEEEeecccCceEE----EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence            655  5765432100101    0000246788888899999999988764444332222233334444478877777778


Q ss_pred             ceEEEEEcCCC
Q 016368          352 ERIMVVDVLAS  362 (390)
Q Consensus       352 ~~v~~~d~~~~  362 (390)
                      ..|.+||+++.
T Consensus       212 gti~~Wn~ktg  222 (399)
T KOG0296|consen  212 GTIIVWNPKTG  222 (399)
T ss_pred             ceEEEEecCCC
Confidence            89999999885

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.50  E-value=2.7  Score=41.07  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=93.9

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ...++.+|+.+++-..+...+. ....               ....-++. +++.....     ...+++++|..+++.+
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g-~~~~---------------~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~  299 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPG-INGA---------------PRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALT  299 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCC-CcCC---------------eeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeE
Confidence            4568888988877666654443 1111               12222344 43433221     1257999999999887


Q ss_pred             cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368          178 FGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC  256 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly  256 (390)
                      .+......-... ...-++ .|++.....      ....++++|..++.    ++.+..-... .   ......-+|+..
T Consensus       300 ~lt~~~~~~~~p-~wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~----~~~Lt~~g~~-~---~~~~~SpDG~~l  364 (448)
T PRK04792        300 RITRHRAIDTEP-SWHPDGKSLIFTSERG------GKPQIYRVNLASGK----VSRLTFEGEQ-N---LGGSITPDGRSM  364 (448)
T ss_pred             ECccCCCCccce-EECCCCCEEEEEECCC------CCceEEEEECCCCC----EEEEecCCCC-C---cCeeECCCCCEE
Confidence            765432111111 111244 455543222      22578999999888    8776421111 1   111223355433


Q ss_pred             EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCC--cEEEEECCCCceEE
Q 016368          257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKG--RLSKYDADHDWWDE  324 (390)
Q Consensus       257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~--~v~~yd~~~~~W~~  324 (390)
                      ++.....+...+.++|+.++..+.+... ... ..+...  .+|+..++.. ..+  .++.+|.+ ..+..
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d-~~ps~s--pdG~~I~~~~~~~g~~~l~~~~~~-G~~~~  430 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQVLTST-RLD-ESPSVA--PNGTMVIYSTTYQGKQVLAAVSID-GRFKA  430 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEEccCC-CCC-CCceEC--CCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence            3322222344567899998887776542 111 122333  5665555533 222  57777764 33443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.41  E-value=0.3  Score=44.22  Aligned_cols=110  Identities=12%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             CCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC----
Q 016368          162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL----  236 (390)
Q Consensus       162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~----  236 (390)
                      ....+-.||+.+.+|..+..-..... ..+... +++||+.|-....  ......+..||.++.+    |..++..    
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~--~~~~~~la~yd~~~~~----w~~~~~~~s~~   86 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLN--GTNSSNLATYDFKNQT----WSSLGGGSSNS   86 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEEC--CCCceeEEEEecCCCe----eeecCCccccc
Confidence            46678899999999998875422211 233333 7788888866542  2245678999999999    9988773    


Q ss_pred             -CCCCccccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCC
Q 016368          237 -KDGRFSREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPE  283 (390)
Q Consensus       237 -~~~~~~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~  283 (390)
                       |.+..   .......++ .+++-|....+......|  ...+|+.+..
T Consensus        87 ipgpv~---a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVT---ALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CCCcEE---EEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence             22211   111111233 566664322233334556  4668988776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=95.36  E-value=1.7  Score=37.95  Aligned_cols=177  Identities=10%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+-.||..++.=..+...-.++..-.++.+  +|+-...||.++        .+.++|...-.    -++.-..+.+. 
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~spV-  127 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSPV-  127 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCCc-
Confidence            4678899887743222222233344343333  677777777765        67777777655    44443333321 


Q ss_pred             cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                          -+++..-+.--++.  |.....+.++|+.++....... +.....-.++.+..+|.+.+.....|..++|+.-+..
T Consensus       128 ----n~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  128 ----NTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             ----ceEEecCCcceEEe--ecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence                33444433322222  1133457899999997766443 2233334455554788888888778889999887633


Q ss_pred             e-EEcc---ccccccccee--EEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          322 W-DEVI---ELAELKGAEK--ITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       322 W-~~i~---~~p~~r~~~~--~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      - +++.   +++ .+..|.  |... +++.....+.+..+.+|+..+
T Consensus       201 ~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  201 TASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             ccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            2 1222   222 122333  2222 555555445555555554433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.29  E-value=3.8  Score=41.42  Aligned_cols=133  Identities=13%  Similarity=0.150  Sum_probs=76.2

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEEC--CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFK--GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP  292 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~  292 (390)
                      ++-++|.....+   .+... .|.+.    .++++..+  |.+.+.|.+  ....+.+++.++++--.+-.+-..|-  .
T Consensus       415 tVRAwDlkRYrN---fRTft-~P~p~----QfscvavD~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgPV--s  482 (893)
T KOG0291|consen  415 TVRAWDLKRYRN---FRTFT-SPEPI----QFSCVAVDPSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGPV--S  482 (893)
T ss_pred             eEEeeeecccce---eeeec-CCCce----eeeEEEEcCCCCEEEeecc--ceEEEEEEEeecCeeeehhcCCCCcc--e
Confidence            667777765442   33222 23322    36666666  889988733  44566788888887555433111111  1


Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +++....+.+.+-|.++..+.+||.- .+|.++.+++.....-++...  |.+|.|. .-+..+.+||+..
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if-~s~~~vEtl~i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~  551 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIF-SSSGTVETLEIRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKE  551 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEee-ccCceeeeEeeccceeEEEEcCCCCeEEEE-EecceEEEEEhhh
Confidence            22222677788888899999999876 567777776655444444333  4455555 2233555555443

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=95.23  E-value=2.1  Score=38.16  Aligned_cols=107  Identities=14%  Similarity=0.046  Sum_probs=65.9

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCc--------e---ecCCCCCCCCcceEEEEE--CCE--EEEEeccCCCCCC--
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNT--------W---FFGPQLSIPRRWCAMGSV--GGV--VYVASGVGAHYRG--  210 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~--------W---~~~~~~~~~r~~~~~~~~--~~~--lyv~GG~~~~~~~--  210 (390)
                      ..|++-|+........+.+++....++.        .   ..+...|.+|++|++.++  .||  .++|||..-....  
T Consensus        39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR  118 (337)
T PF03089_consen   39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR  118 (337)
T ss_pred             eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence            4666666654433666777776654332        1   125678999999998877  343  7889997533111  


Q ss_pred             ---------CccCeEEEEECCCCccccccE--EcccCCCCCccccceEEEEECCEEEEEccc
Q 016368          211 ---------DVARSMKKWDLKSDREDWKWE--KKAQLKDGRFSREAVEAVGFKGNLCMVNLK  261 (390)
Q Consensus       211 ---------~~~~~~~~yd~~t~~~~~~W~--~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~  261 (390)
                               +....++..|++-+.    .+  .++.+.....   .|.+..-++.+|++||.
T Consensus       119 TTenWNsVvDC~P~VfLiDleFGC----~tah~lpEl~dG~S---FHvslar~D~VYilGGH  173 (337)
T PF03089_consen  119 TTENWNSVVDCPPQVFLIDLEFGC----CTAHTLPELQDGQS---FHVSLARNDCVYILGGH  173 (337)
T ss_pred             chhhcceeccCCCeEEEEeccccc----cccccchhhcCCeE---EEEEEecCceEEEEccE
Confidence                     223456777887766    43  3444444433   35556679999999754

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.18  E-value=0.84  Score=43.06  Aligned_cols=145  Identities=10%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEEC--CEEEEEcccCCCCceeEEE
Q 016368          194 VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFK--GNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       194 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~--g~lyv~gg~g~~~~~~~~y  271 (390)
                      .+++.++.||.+.        -+.++|+.|..      .+..+..-+..  -.+.++..  +.+|..+    ....+.++
T Consensus       212 ~Dgkylatgg~d~--------~v~Iw~~~t~e------hv~~~~ghr~~--V~~L~fr~gt~~lys~s----~Drsvkvw  271 (479)
T KOG0299|consen  212 SDGKYLATGGRDR--------HVQIWDCDTLE------HVKVFKGHRGA--VSSLAFRKGTSELYSAS----ADRSVKVW  271 (479)
T ss_pred             CCCcEEEecCCCc--------eEEEecCcccc------hhhcccccccc--eeeeeeecCccceeeee----cCCceEEE
Confidence            3889999999875        56788888765      22222221110  12223222  3466663    23334444


Q ss_pred             eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEECCEEEEEeeC
Q 016368          272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAARGRVCAVCEN  350 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~~g~l~i~g~~  350 (390)
                      +.+.....+.-  ....-.-.++-++-.++...+||.+..+..|+... .=+.+- .+ ...+.. ++.+++.-||.|++
T Consensus       272 ~~~~~s~vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlif-rg-~~~sidcv~~In~~HfvsGSd  346 (479)
T KOG0299|consen  272 SIDQLSYVETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIF-RG-GEGSIDCVAFINDEHFVSGSD  346 (479)
T ss_pred             ehhHhHHHHHH--hCCccceeeechhcccceEEeccccceeEEEeccc-cceeee-eC-CCCCeeeEEEecccceeeccC
Confidence            44333221110  11111111111124688889999999888887632 212221 11 122333 44569999999999


Q ss_pred             CceEEEEEcCCCC
Q 016368          351 GERIMVVDVLASP  363 (390)
Q Consensus       351 ~~~v~~~d~~~~~  363 (390)
                      +..|.+|++.++.
T Consensus       347 nG~IaLWs~~KKk  359 (479)
T KOG0299|consen  347 NGSIALWSLLKKK  359 (479)
T ss_pred             CceEEEeeecccC
Confidence            9999999998763

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=95.13  E-value=0.6  Score=36.90  Aligned_cols=77  Identities=10%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             EEECCEEEEEccc-CCCCceeEEEeCCCCCeEecCCC--CCCCCCCceEEEeeCCeEEEEeCCCC------cEEEE-ECC
Q 016368          249 VGFKGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEG--MHAGWNGPAASTMNEEELYVVNEGKG------RLSKY-DAD  318 (390)
Q Consensus       249 ~~~~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~g~lyv~gg~~~------~v~~y-d~~  318 (390)
                      +.+||-+|..... ......+.+||..+++|+.++.+  .........++. ++|+|-++.....      ++|+. |.+
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~~~iWvLeD~~   80 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIE-YKGKLALVSYNDQGEPDSIDIWVLEDYE   80 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEE-eCCeEEEEEecCCCCcceEEEEEeeccc
Confidence            4589999998533 22345567999999999988763  223344556666 9999999865332      67777 455


Q ss_pred             CCceEEcc
Q 016368          319 HDWWDEVI  326 (390)
Q Consensus       319 ~~~W~~i~  326 (390)
                      ..+|.+..
T Consensus        81 k~~Wsk~~   88 (129)
T PF08268_consen   81 KQEWSKKH   88 (129)
T ss_pred             cceEEEEE
Confidence            67899765

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.05  E-value=3.6  Score=39.87  Aligned_cols=181  Identities=10%  Similarity=0.051  Sum_probs=92.7

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ...++++|+.+++-..+...+. ....               ....-++..+++.....    ...+++++|..+++.+.
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g-~~~~---------------~~~SpDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~  281 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEG-LNGA---------------PAWSPDGSKLAFVLSKD----GNPEIYVMDLASRQLSR  281 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCC-CcCC---------------eEECCCCCEEEEEEccC----CCceEEEEECCCCCeEE
Confidence            3468888988887777664443 1100               11222344333322211    12579999999998877


Q ss_pred             CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC-EEE
Q 016368          179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG-NLC  256 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g-~ly  256 (390)
                      +......-.... ..-++ +|++.....      ....++.+|..++.    ++.+...... .   ......-+| .++
T Consensus       282 lt~~~~~~~~~~-~spDg~~i~f~s~~~------g~~~iy~~d~~~g~----~~~lt~~~~~-~---~~~~~Spdg~~i~  346 (430)
T PRK00178        282 VTNHPAIDTEPF-WGKDGRTLYFTSDRG------GKPQIYKVNVNGGR----AERVTFVGNY-N---ARPRLSADGKTLV  346 (430)
T ss_pred             cccCCCCcCCeE-ECCCCCEEEEEECCC------CCceEEEEECCCCC----EEEeecCCCC-c---cceEECCCCCEEE
Confidence            654321111111 12244 565543222      23478899998888    7776432211 1   111222344 444


Q ss_pred             EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC---CcEEEEECCC
Q 016368          257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK---GRLSKYDADH  319 (390)
Q Consensus       257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~---~~v~~yd~~~  319 (390)
                      +.. ...+.....++|+.++..+.+.. ... ...+...  .+|+.+++....   ..++..+...
T Consensus       347 ~~~-~~~~~~~l~~~dl~tg~~~~lt~-~~~-~~~p~~s--pdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        347 MVH-RQDGNFHVAAQDLQRGSVRILTD-TSL-DESPSVA--PNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEE-ccCCceEEEEEECCCCCEEEccC-CCC-CCCceEC--CCCCEEEEEEecCCceEEEEEECCC
Confidence            442 21223456789999988887765 211 1122222  677776665432   2566666643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.04  E-value=2.9  Score=39.25  Aligned_cols=194  Identities=14%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             EEEEeecCCCCCCCCCc--EEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCC--
Q 016368          150 VLIAATTPHFLPALASP--LAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKS--  223 (390)
Q Consensus       150 ~~~gG~~~~~~~~~~~~--~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t--  223 (390)
                      +++|++...   ....+  +.||..++++..+......-.-.-++.  -+..||+......     ....+..|+...  
T Consensus         2 ~~vgsy~~~---~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~-----~~g~v~~~~i~~~~   73 (345)
T PF10282_consen    2 LYVGSYTNG---KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG-----DSGGVSSYRIDPDT   73 (345)
T ss_dssp             EEEEECCSS---SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS-----TTTEEEEEEEETTT
T ss_pred             EEEEcCCCC---CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc-----CCCCEEEEEECCCc
Confidence            466666431   12344  445668888877654321111111222  2567998865431     234666666655  


Q ss_pred             CccccccEEcccCCCCCccccceEEEEE--CC-EEEEEcccCCCCceeEEEeCCCC-CeEecC---------C-C-CCCC
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGF--KG-NLCMVNLKGNGAKDGAIYNVELD-KWKEMP---------E-G-MHAG  288 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g-~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~---------~-~-~~~~  288 (390)
                      .+    .+.+...+....   ..+.+.+  ++ .+|+.   .++...+.+|++..+ +-....         + . ....
T Consensus        74 g~----L~~~~~~~~~g~---~p~~i~~~~~g~~l~va---ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~  143 (345)
T PF10282_consen   74 GT----LTLLNSVPSGGS---SPCHIAVDPDGRFLYVA---NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEG  143 (345)
T ss_dssp             TE----EEEEEEEEESSS---CEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSS
T ss_pred             ce----eEEeeeeccCCC---CcEEEEEecCCCEEEEE---EccCCeEEEEEccCCcccceeeeecccCCCCCccccccc
Confidence            46    676665542111   1222333  44 45555   334566778888764 222211         0 0 1111


Q ss_pred             CCCceEEEeeC-CeEEEEeCCCCcEEEEECCCCc--eEEcccc--cccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          289 WNGPAASTMNE-EELYVVNEGKGRLSKYDADHDW--WDEVIEL--AELKGAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       289 ~~~~~~~~~~~-g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~--p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ...|.+....+ ..+|+..-....|++|+.....  ......+  +..-....++..  +..+|++.+..+.|.+|++..
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            22334443234 4677777666688888887655  6554433  332233345554  457999987788888888873

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.96  E-value=2.9  Score=38.33  Aligned_cols=171  Identities=14%  Similarity=0.192  Sum_probs=75.7

Q ss_pred             CCCceecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCCCccCeEEEEECC--CCccccccEEcccCCCCCccccceEE
Q 016368          172 QSNTWFFGPQLSIPRRWCAMGSVG-GVVYVASGVGAHYRGDVARSMKKWDLK--SDREDWKWEKKAQLKDGRFSREAVEA  248 (390)
Q Consensus       172 ~t~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~--t~~~~~~W~~~~~~~~~~~~r~~~~~  248 (390)
                      ....|+.+. ++.......+...+ +.-|++|-...           +|-..  -.+    |+.+..-........-.++
T Consensus         4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~-----------il~T~DGG~t----W~~~~~~~~~~~~~~l~~I   67 (302)
T PF14870_consen    4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGT-----------ILKTTDGGKT----WQPVSLDLDNPFDYHLNSI   67 (302)
T ss_dssp             SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTE-----------EEEESSTTSS-----EE-----S-----EEEEE
T ss_pred             cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCE-----------EEEECCCCcc----ccccccCCCccceeeEEEE
Confidence            345787765 33333445555554 56788764421           23332  234    9987643222100002345


Q ss_pred             EEECCEEEEEcccCCCCceeEEEeC--CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368          249 VGFKGNLCMVNLKGNGAKDGAIYNV--ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI  326 (390)
Q Consensus       249 ~~~~g~lyv~gg~g~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~  326 (390)
                      ...++..|++|-     . ..++.+  .-.+|+.++...+.+.....+...-++.+.+++ ..+.+++=.-....|+.+.
T Consensus        68 ~f~~~~g~ivG~-----~-g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~  140 (302)
T PF14870_consen   68 SFDGNEGWIVGE-----P-GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVV  140 (302)
T ss_dssp             EEETTEEEEEEE-----T-TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE
T ss_pred             EecCCceEEEcC-----C-ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcc
Confidence            556888999851     1 234444  345999986422223222333332456666665 4567777666678999876


Q ss_pred             cccccccceeEEE-ECCEEEEEeeCCceEEEEEcCCCCCcceEe
Q 016368          327 ELAELKGAEKITA-ARGRVCAVCENGERIMVVDVLASPARAWLV  369 (390)
Q Consensus       327 ~~p~~r~~~~~~~-~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~  369 (390)
                      .-... ....+.. -+|++++++..++-+..+|.-..   .|+.
T Consensus       141 ~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~  180 (302)
T PF14870_consen  141 SETSG-SINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQP  180 (302)
T ss_dssp             -S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EE
T ss_pred             cCCcc-eeEeEEECCCCcEEEEECcccEEEEecCCCc---cceE
Confidence            43221 1122333 36777777666666667786555   6873

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.89  E-value=0.012  Score=52.60  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=34.6

Q ss_pred             CCCCcHHHHHHHHhcCC--------chhhHhhhHhHHHhhcCCCCCC
Q 016368           34 LPGLPNHLADRCLSSLP--------PALLFSVCHSWRRLLYSPYFPP   72 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP--------l~~~r~Vck~W~~l~~s~~f~~   72 (390)
                      |..|||||+.+||.++=        +.++.+|||.|+..+.+|+|.+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR  153 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR  153 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence            45799999999998864        7899999999999999999765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.83  E-value=3.5  Score=38.67  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             eCCeEEEEe-CCC--------CcEEEEECCCCceEEcccccccccceeEEEE-CC--EEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVN-EGK--------GRLSKYDADHDWWDEVIELAELKGAEKITAA-RG--RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~g-g~~--------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g--~l~i~g~~~~~v~~~d~~~~  362 (390)
                      -++++||.. +..        +.++++|.+  +++.+..++..+..+++++. ++  .||+..+..++|.++|+.+.
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAK--TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECC--CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            468899842 211        489999976  46777777666666677665 44  45655455678999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.78  E-value=4.4  Score=39.57  Aligned_cols=177  Identities=10%  Similarity=0.002  Sum_probs=91.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|..+++-+.+...+....... ..-+| +|++....+      ....++++|..++.    .+.+..-..... 
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~-wSPDG~~La~~~~~~------g~~~Iy~~dl~tg~----~~~lt~~~~~~~-  309 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPR-FSPDGKKLALVLSKD------GQPEIYVVDIATKA----LTRITRHRAIDT-  309 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCee-ECCCCCEEEEEEeCC------CCeEEEEEECCCCC----eEECccCCCCcc-
Confidence            579999999887666654432111111 11244 465554332      23478999999988    777654321111 


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~~  318 (390)
                         .....-+|+ +++.. ...+....+.+|+.+++++.+.. ...........  .+| .|++.....+  .++++|..
T Consensus       310 ---~p~wSpDG~~I~f~s-~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        310 ---EPSWHPDGKSLIFTS-ERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             ---ceEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEEEec-CCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECC
Confidence               112223554 44442 11233567788998888887743 11111122222  455 4444443333  78999999


Q ss_pred             CCceEEcccccccccceeEEEECCE-EEEEeeC--CceEEEEEcCC
Q 016368          319 HDWWDEVIELAELKGAEKITAARGR-VCAVCEN--GERIMVVDVLA  361 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~~g~-l~i~g~~--~~~v~~~d~~~  361 (390)
                      +...+.+..-.... ... ..-+|+ |++....  ...++++|...
T Consensus       383 ~g~~~~lt~~~~d~-~ps-~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        383 TGAMQVLTSTRLDE-SPS-VAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCCeEEccCCCCCC-Cce-ECCCCCEEEEEEecCCceEEEEEECCC
Confidence            88877765322111 112 223444 4433222  22477777643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.69  E-value=4.4  Score=42.78  Aligned_cols=173  Identities=8%  Similarity=0.024  Sum_probs=89.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCC-CcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIP-RRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      ..+.+||..+++-..  .+... ..-.+++..  ++.+++.||.+.        .+.+||..+...   ...+.. ... 
T Consensus       555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~~-  619 (793)
T PLN00181        555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KAN-  619 (793)
T ss_pred             CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CCC-
Confidence            467788887664322  11111 111223332  466777777664        688899876541   222211 111 


Q ss_pred             ccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          241 FSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       241 ~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                          ..++..  .++.+++.|+   ....+.+||..+..  ...+..   .......+.. .++..++.++.++.+..||
T Consensus       620 ----v~~v~~~~~~g~~latgs---~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f-~~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        620 ----ICCVQFPSESGRSLAFGS---ADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRF-VDSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             ----eEEEEEeCCCCCEEEEEe---CCCeEEEEECCCCCccceEecC---CCCCEEEEEE-eCCCEEEEEECCCEEEEEe
Confidence                122222  2466666642   23456789986542  111111   1111122333 4777788888889999999


Q ss_pred             CCCC----ceEEcccccccccceeEE--EECCEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHD----WWDEVIELAELKGAEKIT--AARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~----~W~~i~~~p~~r~~~~~~--~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....    .|..+..+........++  ...+.+++.|+.++.+.+||....
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            8643    244443333222211222  225666677677788999987543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.68  E-value=4.5  Score=39.19  Aligned_cols=177  Identities=12%  Similarity=0.035  Sum_probs=93.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..++++|+.+++-+.+...+..-  ..... -+| +|++....+      ....++++|..++.    .+.+..-.....
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~lt~~~~~~~  290 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKD------GNPEIYVMDLASRQ----LSRVTNHPAIDT  290 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccC------CCceEEEEECCCCC----eEEcccCCCCcC
Confidence            47999999998877765443211  11122 244 455433222      12578999999988    777654322111


Q ss_pred             cccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEEC
Q 016368          242 SREAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~  317 (390)
                          .....-+| ++++.. ...+...+..+|..+++++.+.. .  ...........+| .|++....++  .++.+|.
T Consensus       291 ----~~~~spDg~~i~f~s-~~~g~~~iy~~d~~~g~~~~lt~-~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        291 ----EPFWGKDGRTLYFTS-DRGGKPQIYKVNVNGGRAERVTF-V--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             ----CeEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEEeec-C--CCCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence                11222344 455542 11123456788988888877653 1  1111122221344 4544443333  6899999


Q ss_pred             CCCceEEcccccccccceeEEEECCEEEEEeeC---CceEEEEEcCCC
Q 016368          318 DHDWWDEVIELAELKGAEKITAARGRVCAVCEN---GERIMVVDVLAS  362 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~---~~~v~~~d~~~~  362 (390)
                      .+...+.+.....  .......-+|+.+++...   ...+++.++...
T Consensus       363 ~tg~~~~lt~~~~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        363 QRGSVRILTDTSL--DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             CCCCEEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            9988877764321  111122335565555432   235777777544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.45  E-value=2.8  Score=40.28  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             EEEeCCCC----CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CC
Q 016368          269 AIYNVELD----KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RG  342 (390)
Q Consensus       269 ~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g  342 (390)
                      ..||....    .|.+.-.   .+..+.+++- .+..|++--|.+.++..||.....-+..-....+   .+.+.+  +|
T Consensus       190 tlwDv~g~sp~~~~~~~Hs---AP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P---lstvaf~~~G  262 (673)
T KOG4378|consen  190 TLWDVQGMSPIFHASEAHS---APCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP---LSTVAFSECG  262 (673)
T ss_pred             EEEeccCCCcccchhhhcc---CCcCcceecC-CccceEEEecccceEEEeecccccccceeeecCC---cceeeecCCc
Confidence            35555433    3444433   3444555554 7899999889999999999885443322111111   223333  67


Q ss_pred             EEEEEeeCCceEEEEEcCCCCC
Q 016368          343 RVCAVCENGERIMVVDVLASPA  364 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~~~  364 (390)
                      .+.++|...+.++.||+...+.
T Consensus       263 ~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  263 TYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             eEEEeecCCceEEEEecccCCC
Confidence            7777877778999999988743

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.42  E-value=1.1  Score=40.49  Aligned_cols=118  Identities=18%  Similarity=0.321  Sum_probs=68.3

Q ss_pred             EEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEccc---CCCCceeEEEeCC
Q 016368          199 YVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLK---GNGAKDGAIYNVE  274 (390)
Q Consensus       199 yv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~---g~~~~~~~~yd~~  274 (390)
                      ||-|-+... ..-....+-.||+.+.+    |..+..--....    .++... ++++|+.|--   +........||.+
T Consensus         2 ~VGG~F~~a-GsL~C~~lC~yd~~~~q----W~~~g~~i~G~V----~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~   72 (281)
T PF12768_consen    2 YVGGSFTSA-GSLPCPGLCLYDTDNSQ----WSSPGNGISGTV----TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK   72 (281)
T ss_pred             EEeeecCCC-CCcCCCEEEEEECCCCE----eecCCCCceEEE----EEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence            444444432 12246789999999999    998876532211    334434 6778877521   1123445689999


Q ss_pred             CCCeEecCCCCCCCCCCc--eEEE--eeCCeEEEEeCC-CC--cEEEEECCCCceEEccc
Q 016368          275 LDKWKEMPEGMHAGWNGP--AAST--MNEEELYVVNEG-KG--RLSKYDADHDWWDEVIE  327 (390)
Q Consensus       275 ~~~W~~~~~~~~~~~~~~--~~~~--~~~g~lyv~gg~-~~--~v~~yd~~~~~W~~i~~  327 (390)
                      +.+|+.++........++  ...+  .-...+++.|.. .+  -+.+||  ..+|..+..
T Consensus        73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence            999998876321122222  2221  123456666653 22  567775  558999875

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.35  E-value=5.5  Score=38.74  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ...++.+|+.+++...+...+. ....               ....-++..+++.....    ...+++++|..+++.+.
T Consensus       225 ~~~i~~~dl~~g~~~~l~~~~g-~~~~---------------~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        225 RPRVYLLDLETGQRELVGNFPG-MTFA---------------PRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTR  284 (435)
T ss_pred             CCEEEEEECCCCcEEEeecCCC-cccC---------------cEECCCCCEEEEEEecC----CCceEEEEECCCCceEE
Confidence            3568889998888777765443 1111               22223444443332211    13579999999888776


Q ss_pred             CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368          179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM  257 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv  257 (390)
                      +...+..-. .....-++ +|++.....      ....++++|..+..    .+.+...... .   ......-+|+..+
T Consensus       285 Lt~~~~~~~-~~~~spDG~~i~f~s~~~------g~~~Iy~~d~~g~~----~~~lt~~~~~-~---~~~~~SpdG~~ia  349 (435)
T PRK05137        285 LTDSPAIDT-SPSYSPDGSQIVFESDRS------GSPQLYVMNADGSN----PRRISFGGGR-Y---STPVWSPRGDLIA  349 (435)
T ss_pred             ccCCCCccC-ceeEcCCCCEEEEEECCC------CCCeEEEEECCCCC----eEEeecCCCc-c---cCeEECCCCCEEE
Confidence            654332111 11112244 454433221      23478899988777    6665432111 1   1112223554333


Q ss_pred             EcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC-C-----CcEEEEECCCCceEEcc
Q 016368          258 VNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG-K-----GRLSKYDADHDWWDEVI  326 (390)
Q Consensus       258 ~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~-~-----~~v~~yd~~~~~W~~i~  326 (390)
                      +.....+...+.++|+.++..+.+....  ....+...  .||+..++... .     ..++.+|.....-+.+.
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~~~lt~~~--~~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGERILTSGF--LVEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             EEEcCCCceEEEEEECCCCceEeccCCC--CCCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            3222223345678898776666554411  11222222  56665544321 1     36788887765444443

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=94.32  E-value=0.4  Score=37.89  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             eCCeEEEEeCC----CCcEEEEECCCCceEEcccc---cccccceeEEEECCEEEEEeeCC------ceEEEEEcCCCCC
Q 016368          298 NEEELYVVNEG----KGRLSKYDADHDWWDEVIEL---AELKGAEKITAARGRVCAVCENG------ERIMVVDVLASPA  364 (390)
Q Consensus       298 ~~g~lyv~gg~----~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~g~l~i~g~~~------~~v~~~d~~~~~~  364 (390)
                      +||-||.+...    ...|..||.++++|+.+...   ........++.++|+|.++....      -++|+++-..+  
T Consensus         4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k--   81 (129)
T PF08268_consen    4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK--   81 (129)
T ss_pred             ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--
Confidence            79999988765    34899999999999988742   12344567888999999986331      47888864433  


Q ss_pred             cceE
Q 016368          365 RAWL  368 (390)
Q Consensus       365 ~~W~  368 (390)
                      ++|.
T Consensus        82 ~~Ws   85 (129)
T PF08268_consen   82 QEWS   85 (129)
T ss_pred             ceEE
Confidence            4787

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=94.29  E-value=1.1  Score=37.01  Aligned_cols=81  Identities=12%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             EEECCEEEEEcccCCCCc--eeEEEeCCCCCe-EecCCCCCCC--CCCceEEEeeCCeEEEEeCCC----CcEEEEEC--
Q 016368          249 VGFKGNLCMVNLKGNGAK--DGAIYNVELDKW-KEMPEGMHAG--WNGPAASTMNEEELYVVNEGK----GRLSKYDA--  317 (390)
Q Consensus       249 ~~~~g~lyv~gg~g~~~~--~~~~yd~~~~~W-~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~----~~v~~yd~--  317 (390)
                      +.++|.+|+++.......  .+..||+.++++ +.++.+....  .....+.+..+++|-++-...    -+||+.+.  
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~   81 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG   81 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence            568999999964432222  477999999999 6665422122  112233222478888885322    26777662  


Q ss_pred             -CCCceEEccccc
Q 016368          318 -DHDWWDEVIELA  329 (390)
Q Consensus       318 -~~~~W~~i~~~p  329 (390)
                       ...+|+++-.++
T Consensus        82 ~~~~SWtK~~~i~   94 (164)
T PF07734_consen   82 YGKESWTKLFTID   94 (164)
T ss_pred             cCcceEEEEEEEe
Confidence             367899986544

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.25  E-value=4.7  Score=39.92  Aligned_cols=119  Identities=14%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             EEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-cc-ccceEEEEEC-CEEEEEcccCCCCc
Q 016368          190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-FS-REAVEAVGFK-GNLCMVNLKGNGAK  266 (390)
Q Consensus       190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-~~-r~~~~~~~~~-g~lyv~gg~g~~~~  266 (390)
                      +-++.+++||+....         ..+..+|..|.+  ..|+.-...+... .. -.....+..+ +++|+-.    ...
T Consensus        56 sPvv~~g~vy~~~~~---------g~l~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~----~~g  120 (488)
T cd00216          56 TPLVVDGDMYFTTSH---------SALFALDAATGK--VLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT----FDG  120 (488)
T ss_pred             CCEEECCEEEEeCCC---------CcEEEEECCCCh--hhceeCCCCCccccccccccCCcEEccCCeEEEec----CCC
Confidence            345679999986432         367889998866  3387643222000 00 0012234456 8888763    334


Q ss_pred             eeEEEeCCCC--CeEecCCCCC-CCC-CCceEEEeeCCeEEEEe--------CCCCcEEEEECCCCc--eEE
Q 016368          267 DGAIYNVELD--KWKEMPEGMH-AGW-NGPAASTMNEEELYVVN--------EGKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       267 ~~~~yd~~~~--~W~~~~~~~~-~~~-~~~~~~~~~~g~lyv~g--------g~~~~v~~yd~~~~~--W~~  324 (390)
                      .+..+|.+++  .|+.-..... ... ...+.++ .++.+|+-.        +.++.++.+|.++.+  |+.
T Consensus       121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             eEEEEECCCCCEeeeecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            5678898765  6886543110 011 1122233 566666532        234688999998754  875

The alignment model contains an 8-bladed beta-propeller.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=94.19  E-value=2.4  Score=37.07  Aligned_cols=139  Identities=10%  Similarity=0.134  Sum_probs=77.8

Q ss_pred             cCeEEEEECCCCccccccEEccc--CCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCC
Q 016368          213 ARSMKKWDLKSDREDWKWEKKAQ--LKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGW  289 (390)
Q Consensus       213 ~~~~~~yd~~t~~~~~~W~~~~~--~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~  289 (390)
                      ..++..+|..|++      ++..  ++.+.-    ..=+..+|++..+.    .+..+.-+|..+  +..+.. .+|-.-
T Consensus       164 d~tVRLWD~rTgt------~v~sL~~~s~Vt----SlEvs~dG~ilTia----~gssV~Fwdaks--f~~lKs~k~P~nV  227 (334)
T KOG0278|consen  164 DKTVRLWDHRTGT------EVQSLEFNSPVT----SLEVSQDGRILTIA----YGSSVKFWDAKS--FGLLKSYKMPCNV  227 (334)
T ss_pred             CCceEEEEeccCc------EEEEEecCCCCc----ceeeccCCCEEEEe----cCceeEEecccc--ccceeeccCcccc
Confidence            4578888988887      3332  222221    11223577777663    344455555443  222222 133333


Q ss_pred             CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCCC-cc
Q 016368          290 NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASPA-RA  366 (390)
Q Consensus       290 ~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~~-~~  366 (390)
                      ..+++-  .+..+||.||.+..+++||..|+.=.... .....+..-++.+  +|.+|..|+.+..+.+|.+-.... +.
T Consensus       228 ~SASL~--P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~  304 (334)
T KOG0278|consen  228 ESASLH--PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGL  304 (334)
T ss_pred             cccccc--CCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhh
Confidence            333333  67799999999999999999987533321 1222222233333  899999998777777665543322 26


Q ss_pred             eEec
Q 016368          367 WLVD  370 (390)
Q Consensus       367 W~~~  370 (390)
                      |...
T Consensus       305 ~~~~  308 (334)
T KOG0278|consen  305 WKCV  308 (334)
T ss_pred             cccc
Confidence            7643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.12  E-value=6.1  Score=38.40  Aligned_cols=182  Identities=11%  Similarity=0.059  Sum_probs=92.1

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ...++.+|..+++-..+...+. ....               ....-++..+++.....    ...+++++|+.+++.+.
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g-~~~~---------------~~~SpDG~~l~~~~s~~----g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRG-INGA---------------PSFSPDGRRLALTLSRD----GNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCC-CccC---------------ceECCCCCEEEEEEeCC----CCceEEEEECCCCCeEE
Confidence            3457888888877766654443 1110               12223444343332211    12579999999887766


Q ss_pred             CCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECC-EEE
Q 016368          179 GPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKG-NLC  256 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g-~ly  256 (390)
                      +......-... ...-+++ |++.....      ....++++|..++.    .+.+..-..  ..  ......-+| .++
T Consensus       287 lt~~~~~~~~~-~~spDG~~l~f~sd~~------g~~~iy~~dl~~g~----~~~lt~~g~--~~--~~~~~SpDG~~Ia  351 (433)
T PRK04922        287 LTNHFGIDTEP-TWAPDGKSIYFTSDRG------GRPQIYRVAASGGS----AERLTFQGN--YN--ARASVSPDGKKIA  351 (433)
T ss_pred             CccCCCCccce-EECCCCCEEEEEECCC------CCceEEEEECCCCC----eEEeecCCC--Cc--cCEEECCCCCEEE
Confidence            54332111111 1122444 54443222      12478888988887    776643211  10  111222344 444


Q ss_pred             EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC---CCcEEEEECCCC
Q 016368          257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG---KGRLSKYDADHD  320 (390)
Q Consensus       257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~---~~~v~~yd~~~~  320 (390)
                      +... ..+...+.++|+.++..+.+... . ....+...  .+|+.+++...   ...++.+|....
T Consensus       352 ~~~~-~~~~~~I~v~d~~~g~~~~Lt~~-~-~~~~p~~s--pdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        352 MVHG-SGGQYRIAVMDLSTGSVRTLTPG-S-LDESPSFA--PNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEC-CCCceeEEEEECCCCCeEECCCC-C-CCCCceEC--CCCCEEEEEEecCCceEEEEEECCCC
Confidence            4421 22234677899988888776542 1 11222222  67776555442   226788877643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.05  E-value=6.3  Score=38.31  Aligned_cols=177  Identities=12%  Similarity=0.067  Sum_probs=90.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|+.+++.+.+...+........ .-+| +|++....+      ....++++|..++.    -+.+...+...  
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~Lt~~~~~~--  292 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRF-SPDGRKVVMSLSQG------GNTDIYTMDLRSGT----TTRLTDSPAID--  292 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEE-CCCCCEEEEEEecC------CCceEEEEECCCCc----eEEccCCCCcc--
Confidence            5899999999988776654432221111 2244 454443322      23578889998887    66665433211  


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCC--CcEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGK--GRLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~--~~v~~yd~~  318 (390)
                        ......-+|+ +++.. ...+...++++|..++..+.+.. . .......... .+|+ |++.....  ..++.+|..
T Consensus       293 --~~~~~spDG~~i~f~s-~~~g~~~Iy~~d~~g~~~~~lt~-~-~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        293 --TSPSYSPDGSQIVFES-DRSGSPQLYVMNADGSNPRRISF-G-GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             --CceeEcCCCCEEEEEE-CCCCCCeEEEEECCCCCeEEeec-C-CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC
Confidence              1122223554 44332 12233467788888777666654 1 1112122222 4554 44443222  378999987


Q ss_pred             CCceEEcccccccccceeEE-EECCE-EEEEeeC-C----ceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKIT-AARGR-VCAVCEN-G----ERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~-~~~g~-l~i~g~~-~----~~v~~~d~~~~  362 (390)
                      +.....+..-.   ...... .-+|+ |+..... +    ..++++|+.+.
T Consensus       367 ~~~~~~lt~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        367 GSGERILTSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCceEeccCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            76665554211   111222 22444 4444321 1    36888888665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.04  E-value=6  Score=38.01  Aligned_cols=148  Identities=9%  Similarity=-0.005  Sum_probs=77.3

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ..++++|..+++-..+..... ....               ....-+++ +++....     ....+++.+|..++..+.
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~-~~~~---------------~~~spDg~~l~~~~~~-----~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG-MNGA---------------PAFSPDGSKLAVSLSK-----DGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC-Cccc---------------eEECCCCCEEEEEECC-----CCCccEEEEECCCCCEEE
Confidence            468888888876665544332 1110               11222343 4443322     122579999999887776


Q ss_pred             CCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368          179 GPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM  257 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv  257 (390)
                      +............ .-++ +|++.....      ....++++|..+..    ++.+........    .....-+|+.++
T Consensus       273 l~~~~~~~~~~~~-s~dg~~l~~~s~~~------g~~~iy~~d~~~~~----~~~l~~~~~~~~----~~~~spdg~~i~  337 (417)
T TIGR02800       273 LTNGPGIDTEPSW-SPDGKSIAFTSDRG------GSPQIYMMDADGGE----VRRLTFRGGYNA----SPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCCCCCEEE-CCCCCEEEEEECCC------CCceEEEEECCCCC----EEEeecCCCCcc----CeEECCCCCEEE
Confidence            6543211111111 1244 455443322      12478899998887    776653221111    112234666555


Q ss_pred             EcccCCCCceeEEEeCCCCCeEecCC
Q 016368          258 VNLKGNGAKDGAIYNVELDKWKEMPE  283 (390)
Q Consensus       258 ~gg~g~~~~~~~~yd~~~~~W~~~~~  283 (390)
                      +...+.+...+.++|+.++.++.+..
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~~~l~~  363 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGERVLTD  363 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCeEEccC
Confidence            54332234467789998877776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.02  E-value=11  Score=41.10  Aligned_cols=184  Identities=11%  Similarity=0.044  Sum_probs=97.7

Q ss_pred             CCCcEEEeCCCCceecCCCC----------CCCC--cceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCcccc
Q 016368          163 LASPLAFNPQSNTWFFGPQL----------SIPR--RWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDW  228 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~----------~~~r--~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~  228 (390)
                      .+.+.++|+..+.-..+...          ...+  .-+++++.  ++.|||.-..+        +.+.++|+.++.   
T Consensus       589 n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--------~~Ir~id~~~~~---  657 (1057)
T PLN02919        589 HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--------HALREIDFVNET---  657 (1057)
T ss_pred             CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--------ceEEEEecCCCE---
Confidence            36788899865532222221          0111  11344443  46789874432        367888887765   


Q ss_pred             ccEEcccCCC-------------CCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCC---------
Q 016368          229 KWEKKAQLKD-------------GRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG---------  284 (390)
Q Consensus       229 ~W~~~~~~~~-------------~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~---------  284 (390)
                       =+.+..-..             .... ....+++.  ++.+||.   ..+.+.+.+||+.++........         
T Consensus       658 -V~tlag~G~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~g~LyVa---d~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~  732 (1057)
T PLN02919        658 -VRTLAGNGTKGSDYQGGKKGTSQVLN-SPWDVCFEPVNEKVYIA---MAGQHQIWEYNISDGVTRVFSGDGYERNLNGS  732 (1057)
T ss_pred             -EEEEeccCcccCCCCCChhhhHhhcC-CCeEEEEecCCCeEEEE---ECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence             333321100             0000 01334443  6789988   23456678888877655432210         


Q ss_pred             CC---CCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCCceEEccc----cc----------------ccccceeEEEE
Q 016368          285 MH---AGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHDWWDEVIE----LA----------------ELKGAEKITAA  340 (390)
Q Consensus       285 ~~---~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W~~i~~----~p----------------~~r~~~~~~~~  340 (390)
                      ..   ....-.++++..+| .||+....++.|.+||++++.-..+..    .+                ......+++..
T Consensus       733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd  812 (1057)
T PLN02919        733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA  812 (1057)
T ss_pred             ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence            00   00111223332344 599999888899999998765332210    00                01122344443


Q ss_pred             -CCEEEEEeeCCceEEEEEcCCC
Q 016368          341 -RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 -~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       +|.|||.-..++.|.++|+.+.
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCC
Confidence             6789998777789999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.97  E-value=3.8  Score=35.59  Aligned_cols=212  Identities=8%  Similarity=0.039  Sum_probs=114.9

Q ss_pred             EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec-CCCCCCCCcceEEEEEC--CEEEEEeccCCCCCCCccCeEEE
Q 016368          142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSVG--GVVYVASGVGAHYRGDVARSMKK  218 (390)
Q Consensus       142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~  218 (390)
                      ....++.-++.+|+.       ..+.+||..|++--+ ....   -..-..+.++  ..+.+-|+++.        ++.+
T Consensus        66 ~~s~Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr~rgH---~aqVNtV~fNeesSVv~SgsfD~--------s~r~  127 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGD-------KAVQVWDVNTGKVDRRFRGH---LAQVNTVRFNEESSVVASGSFDS--------SVRL  127 (307)
T ss_pred             cccccccccccCCCC-------ceEEEEEcccCeeeeecccc---cceeeEEEecCcceEEEeccccc--------eeEE
Confidence            344556667776653       468899999885422 1100   0111223333  34666666654        7889


Q ss_pred             EECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee
Q 016368          219 WDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN  298 (390)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  298 (390)
                      ||-.++.    -+.+.-+.....   ....+.+.+...+-|   .-....-.||...++-..  .-+..+....+..  .
T Consensus       128 wDCRS~s----~ePiQildea~D---~V~Si~v~~heIvaG---S~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s--~  193 (307)
T KOG0316|consen  128 WDCRSRS----FEPIQILDEAKD---GVSSIDVAEHEIVAG---SVDGTVRTYDIRKGTLSS--DYFGHPITSVSFS--K  193 (307)
T ss_pred             EEcccCC----CCccchhhhhcC---ceeEEEecccEEEee---ccCCcEEEEEeecceeeh--hhcCCcceeEEec--C
Confidence            9999998    788877776665   466666777766663   112234579887665332  1122222222222  5


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcc-cccccccceeEEEEC-CEEEEEeeCCceEEEEEcCCCCCcceE-ecCCCCe
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVI-ELAELKGAEKITAAR-GRVCAVCENGERIMVVDVLASPARAWL-VDPPRGF  375 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~-g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~p~g~  375 (390)
                      ++.-.+++.-++.+...|-+|.+--+.- .....-.-.-++..+ +...+-|..+..|++||+....  +=. ...+.+.
T Consensus       194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v  271 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTV  271 (307)
T ss_pred             CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence            5666666666667777777765432211 000011111233443 3344444556789999998762  112 3455555


Q ss_pred             eEEEEEeecccc
Q 016368          376 QVVAVHVLPRMC  387 (390)
Q Consensus       376 ~~~~~~~~~~~~  387 (390)
                      .+..+++-|+|.
T Consensus       272 ~v~dl~~hp~~~  283 (307)
T KOG0316|consen  272 IVTDLSCHPTMD  283 (307)
T ss_pred             eEEeeecccCcc
Confidence            556666667664

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.94  E-value=1.2  Score=41.12  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=37.8

Q ss_pred             eCCeEEEEeC--CCC-------cEEEEECCCCceEEcccccccccceeEEEE-CC--EEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNE--GKG-------RLSKYDADHDWWDEVIELAELKGAEKITAA-RG--RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg--~~~-------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g--~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..++|||+--  ..+       .||+||+++.+=  +..++.....-++.+. ++  .||.+...+..+.++|..+.
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            4689998742  111       899999998753  3333322222244444 33  46656455678999999886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13684 Ycf48-like protein; Provisional

Probab=93.93  E-value=5.5  Score=37.24  Aligned_cols=125  Identities=17%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             cEEccc---CCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCC--CCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          230 WEKKAQ---LKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVE--LDKWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       230 W~~~~~---~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                      |+++..   .+...     ..+... ++.+|+.|.      .+.+|-..  -++|+.+.... .. ....+.. ..+..+
T Consensus       121 W~~~~~~~~~~~~~-----~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~-~g-~~~~i~~-~~~g~~  186 (334)
T PRK13684        121 WTRIPLSEKLPGSP-----YLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVEDA-AG-VVRNLRR-SPDGKY  186 (334)
T ss_pred             CeEccCCcCCCCCc-----eEEEEECCCcceeeec------cceEEEECCCCCCceeCcCCC-cc-eEEEEEE-CCCCeE
Confidence            998863   22221     223333 445666642      23355444  46999887622 22 2223333 444556


Q ss_pred             EEeCCCCcEEEE-ECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCCCCcceE-ecCC
Q 016368          304 VVNEGKGRLSKY-DADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLASPARAWL-VDPP  372 (390)
Q Consensus       304 v~gg~~~~v~~y-d~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~p  372 (390)
                      ++.|..+.++.- |....+|+.+.. +....-.++... ++.++++|..+. +. +. .+..++.|+ +..|
T Consensus       187 v~~g~~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~-~~-~~-s~d~G~sW~~~~~~  254 (334)
T PRK13684        187 VAVSSRGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQ-IR-FN-DPDDLESWSKPIIP  254 (334)
T ss_pred             EEEeCCceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCE-EE-Ec-cCCCCCccccccCC
Confidence            666666766654 455567999864 333333444443 788888865543 32 21 233445788 4444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=93.79  E-value=5.3  Score=36.84  Aligned_cols=157  Identities=10%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             cCCCceEEeec--CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCC--cceEEEEECCEEEEEeccCCCCCCC
Q 016368          136 RKLPVQSLGVR--NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPR--RWCAMGSVGGVVYVASGVGAHYRGD  211 (390)
Q Consensus       136 ~~~~~~~~~~~--~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~  211 (390)
                      +..++-+++++  ..+++.||+.       +..++|+..++.|--.  +....  ...+....++.+.+.|+.++     
T Consensus        63 H~~svFavsl~P~~~l~aTGGgD-------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG-----  128 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNNLVATGGGD-------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG-----  128 (399)
T ss_pred             cCCceEEEEeCCCCceEEecCCC-------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc-----
Confidence            33333444443  4677777663       3577889888875322  21111  22233345788888888776     


Q ss_pred             ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC
Q 016368          212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG  291 (390)
Q Consensus       212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  291 (390)
                         .+.++...++...  |.....+..-.+-+- |    -.+.++..|   .....+++|...++.-.++-++ +.....
T Consensus       129 ---~v~v~~~stg~~~--~~~~~e~~dieWl~W-H----p~a~illAG---~~DGsvWmw~ip~~~~~kv~~G-h~~~ct  194 (399)
T KOG0296|consen  129 ---KVLVFKVSTGGEQ--WKLDQEVEDIEWLKW-H----PRAHILLAG---STDGSVWMWQIPSQALCKVMSG-HNSPCT  194 (399)
T ss_pred             ---cEEEEEcccCceE--EEeecccCceEEEEe-c----ccccEEEee---cCCCcEEEEECCCcceeeEecC-CCCCcc
Confidence               6677777766532  665433322111000 1    023344442   1123355666666522222221 122222


Q ss_pred             ceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          292 PAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       292 ~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      .+-.. .+|+..+.|..++.+.+||+++..
T Consensus       195 ~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  195 CGEFI-PDGKRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             ccccc-CCCceEEEEecCceEEEEecCCCc
Confidence            23333 678988888889999999999864

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.33  E-value=1.1  Score=40.86  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=72.8

Q ss_pred             eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEE
Q 016368          268 GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAV  347 (390)
Q Consensus       268 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~  347 (390)
                      +.+.|..+++=-.-.-.||.     +--. .+|+||+.....+.+..+|+++.+...+..+|....  ++..+ |.+.++
T Consensus       187 G~vidv~s~evl~~GLsmPh-----SPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r--GL~f~-G~llvV  257 (335)
T TIGR03032       187 GCVIDIPSGEVVASGLSMPH-----SPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR--GLAFA-GDFAFV  257 (335)
T ss_pred             eEEEEeCCCCEEEcCccCCc-----CCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc--cccee-CCEEEE
Confidence            44677777743322211222     2222 899999999989999999999999999998875332  34444 666667


Q ss_pred             eeC--------------------CceEEEEEcCCCCCcceEecCCCCeeEEEEEeecccccC
Q 016368          348 CEN--------------------GERIMVVDVLASPARAWLVDPPRGFQVVAVHVLPRMCKQ  389 (390)
Q Consensus       348 g~~--------------------~~~v~~~d~~~~~~~~W~~~~p~g~~~~~~~~~~~~~~~  389 (390)
                      |-.                    ...++++|+.+...-.|--.--.--++..|++||.+.-|
T Consensus       258 gmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P  319 (335)
T TIGR03032       258 GLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP  319 (335)
T ss_pred             EeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence            711                    126889999888543344221111267888999986544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.25  E-value=8.2  Score=37.12  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=97.8

Q ss_pred             CCCcEEEeCCCCcee--cCCCCCCCCc-ceEEEEE-CCE-EEEEeccCCCCCCCccCeEEEEECCCC-----ccccccEE
Q 016368          163 LASPLAFNPQSNTWF--FGPQLSIPRR-WCAMGSV-GGV-VYVASGVGAHYRGDVARSMKKWDLKSD-----REDWKWEK  232 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~--~~~~~~~~r~-~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~-----~~~~~W~~  232 (390)
                      ...++.+...+..-.  .+-.-+.... ...+..- +++ |++......     ..+.+++.|....     .    |+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-----~~s~v~~~d~~~~~~~~~~----~~~  271 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-----SESEVYLLDLDDGGSPDAK----PKL  271 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-----SEEEEEEEECCCTTTSS-S----EEE
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-----cCCeEEEEeccccCCCcCC----cEE
Confidence            556888887776544  2212222222 2222222 444 333332221     2468899999875     5    887


Q ss_pred             cccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC---eE-ecCCCCCCCCCCceEEEeeCCeEEEEeCC
Q 016368          233 KAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK---WK-EMPEGMHAGWNGPAASTMNEEELYVVNEG  308 (390)
Q Consensus       233 ~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~  308 (390)
                      +..--...    .+.+...++.+|+..-.+.....+..+++....   |. .+.+ ......-..+.+ .++.|++..-.
T Consensus       272 l~~~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~-~~~~Lvl~~~~  345 (414)
T PF02897_consen  272 LSPREDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSL-FKDYLVLSYRE  345 (414)
T ss_dssp             EEESSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE-ETTEEEEEEEE
T ss_pred             EeCCCCce----EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEE-ECCEEEEEEEE
Confidence            76533322    244555699999986333333456678887664   66 4433 212222334443 78999988765


Q ss_pred             CC--cEEEEECCCCceEEcc-cccccccceeEEE--ECCEEEEEeeC---CceEEEEEcCCCCCcceE
Q 016368          309 KG--RLSKYDADHDWWDEVI-ELAELKGAEKITA--ARGRVCAVCEN---GERIMVVDVLASPARAWL  368 (390)
Q Consensus       309 ~~--~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~--~~g~l~i~g~~---~~~v~~~d~~~~~~~~W~  368 (390)
                      ++  .+.+||.. ..|.... .+|..-...++..  -.+.+++.-..   -..++.||+.+...+.|.
T Consensus       346 ~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  346 NGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             CCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            55  88999988 2333332 2332211112221  14555554332   238899999988544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.83  E-value=11  Score=37.35  Aligned_cols=106  Identities=11%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             CCcEEEeCCCC--ceecCCCCC----CCC-cceEEEEEC-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLS----IPR-RWCAMGSVG-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ  235 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~----~~r-~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~  235 (390)
                      ..++.+|..|+  .|+.-....    .+. .....++.+ ++||+...         ...+..+|.+|++.  .|+.-..
T Consensus        71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------~g~v~AlD~~TG~~--~W~~~~~  139 (488)
T cd00216          71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------DGRLVALDAETGKQ--VWKFGNN  139 (488)
T ss_pred             CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------CCeEEEEECCCCCE--eeeecCC
Confidence            57888898876  476532221    111 111234446 78887432         23788899988763  3875433


Q ss_pred             CCCCCccccceEEEEECCEEEEEcccCC-----CCceeEEEeCCCC--CeEe
Q 016368          236 LKDGRFSREAVEAVGFKGNLCMVNLKGN-----GAKDGAIYNVELD--KWKE  280 (390)
Q Consensus       236 ~~~~~~~r~~~~~~~~~g~lyv~gg~g~-----~~~~~~~yd~~~~--~W~~  280 (390)
                      -..........+.++.++.+|+-...+.     ......++|.+++  .|+.
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            2210000001334456777775421111     1234568898766  5875

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.69  E-value=8  Score=35.49  Aligned_cols=183  Identities=13%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      ...++.+....+.+.       ...+++=.-.-.+|+.+..-.. -.-...... ++++++++....        -....
T Consensus       108 ~i~~l~~~~~~l~~~-------~G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G~--------~~~s~  171 (302)
T PF14870_consen  108 GITALGDGSAELAGD-------RGAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRGN--------FYSSW  171 (302)
T ss_dssp             EEEEEETTEEEEEET-------T--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSS--------EEEEE
T ss_pred             EEEEcCCCcEEEEcC-------CCcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECccc--------EEEEe
Confidence            444455544444432       1345554445568987643222 112222333 566555553332        33456


Q ss_pred             ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEe--CCCCCeEecCCCCCCCCCC-ceEEE
Q 016368          220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN--VELDKWKEMPEGMHAGWNG-PAAST  296 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd--~~~~~W~~~~~~~~~~~~~-~~~~~  296 (390)
                      |+....    |+........+.   ......-++.++++. +   +..+..=+  ...++|++...+......+ ..++.
T Consensus       172 ~~G~~~----w~~~~r~~~~ri---q~~gf~~~~~lw~~~-~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  172 DPGQTT----WQPHNRNSSRRI---QSMGFSPDGNLWMLA-R---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             -TT-SS-----EEEE--SSS-E---EEEEE-TTS-EEEEE-T---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred             cCCCcc----ceEEccCcccee---hhceecCCCCEEEEe-C---CcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence            777778    987766544433   222333577888873 1   11122222  2345888743312223332 34444


Q ss_pred             eeCCeEEEEeCCCCcEEEEECCCCceEEcccccc-cccceeEEEE-CCEEEEEeeCC
Q 016368          297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAE-LKGAEKITAA-RGRVCAVCENG  351 (390)
Q Consensus       297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~-~g~l~i~g~~~  351 (390)
                      .-++.+++.|| ++.+++=.-...+|++...... +-..+.++.. .++-+|+|.++
T Consensus       241 ~~~~~~wa~gg-~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  241 RPPNEIWAVGG-SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             SSSS-EEEEES-TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             cCCCCEEEEeC-CccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            34688888877 4455544445688999875332 2233344444 67999996655

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.33  E-value=12  Score=36.46  Aligned_cols=178  Identities=10%  Similarity=-0.027  Sum_probs=91.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|..+++-+.+...+...... ...-+| +|++....++      ...++++|+.++.    -+.+..-..... 
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~~-  295 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGIDT-  295 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCcc-
Confidence            57999999988877665443211111 112244 4554432221      2478999999887    666543221111 


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCC--cEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKG--RLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~--~v~~yd~~  318 (390)
                         .....-+|+ +++.. ...+......+|..+++.+.+.. .  +..........+| .|++..+.++  .++.+|..
T Consensus       296 ---~~~~spDG~~l~f~s-d~~g~~~iy~~dl~~g~~~~lt~-~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        296 ---EPTWAPDGKSIYFTS-DRGGRPQIYRVAASGGSAERLTF-Q--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             ---ceEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEEeec-C--CCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence               112223554 44432 11123456778888887776653 1  1111122221455 4444444332  79999998


Q ss_pred             CCceEEcccccccccceeEEEECCEEEEEeeC---CceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAARGRVCAVCEN---GERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~---~~~v~~~d~~~~  362 (390)
                      +...+.+..-... ... ...-+|+.+++...   ...++++|+...
T Consensus       369 ~g~~~~Lt~~~~~-~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        369 TGSVRTLTPGSLD-ESP-SFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCeEECCCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            8888766532211 111 22235554444322   346788887543

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=92.08  E-value=3  Score=37.23  Aligned_cols=64  Identities=11%  Similarity=0.030  Sum_probs=38.3

Q ss_pred             CCCCCCCceEEE--eeCC-eEEEEeCCCC-------------------cEEEEECCCCceEEccccccc---ccceeEEE
Q 016368          285 MHAGWNGPAAST--MNEE-ELYVVNEGKG-------------------RLSKYDADHDWWDEVIELAEL---KGAEKITA  339 (390)
Q Consensus       285 ~~~~~~~~~~~~--~~~g-~lyv~gg~~~-------------------~v~~yd~~~~~W~~i~~~p~~---r~~~~~~~  339 (390)
                      .|.+|++|++-+  .-+. ..++|||.+.                   .|+..|++-...+. ..+|..   ...|...+
T Consensus        84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~ta-h~lpEl~dG~SFHvsla  162 (337)
T PF03089_consen   84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTA-HTLPELQDGQSFHVSLA  162 (337)
T ss_pred             CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccc-ccchhhcCCeEEEEEEe
Confidence            789999998766  1222 3445666321                   56666666544433 224433   33455555


Q ss_pred             ECCEEEEEee
Q 016368          340 ARGRVCAVCE  349 (390)
Q Consensus       340 ~~g~l~i~g~  349 (390)
                      -+|.|||+|+
T Consensus       163 r~D~VYilGG  172 (337)
T PF03089_consen  163 RNDCVYILGG  172 (337)
T ss_pred             cCceEEEEcc
Confidence            6999999985

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK03629 tolB translocation protein TolB; Provisional

Probab=91.96  E-value=13  Score=36.15  Aligned_cols=138  Identities=8%  Similarity=-0.028  Sum_probs=71.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      .+++++|..+++.+.+......-... .-.-+++ |+......      ....++.+|+.+..    -+.+.......  
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~~------g~~~Iy~~d~~~g~----~~~lt~~~~~~--  333 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQA------GRPQVYKVNINGGA----PQRITWEGSQN--  333 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCCC------CCceEEEEECCCCC----eEEeecCCCCc--
Confidence            36999999988877665432111111 1112444 44433221      12478888888876    55553321111  


Q ss_pred             ccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC---cEEEEECCC
Q 016368          243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG---RLSKYDADH  319 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~---~v~~yd~~~  319 (390)
                        ......-+|+..++.....+.....++|+++++++.+.. .. .-..+...  .||+..++...++   .++..+...
T Consensus       334 --~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~-~~~~p~~S--pDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        334 --QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TF-LDETPSIA--PNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             --cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-CC-CCCCceEC--CCCCEEEEEEcCCCceEEEEEECCC
Confidence              112223455544442222233456789999998887765 21 11223333  6777776665443   355555543


Q ss_pred             C
Q 016368          320 D  320 (390)
Q Consensus       320 ~  320 (390)
                      .
T Consensus       408 ~  408 (429)
T PRK03629        408 R  408 (429)
T ss_pred             C
Confidence            3

>PLN00181 protein SPA1-RELATED; Provisional

Probab=91.96  E-value=19  Score=38.12  Aligned_cols=175  Identities=4%  Similarity=-0.005  Sum_probs=82.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++-..  .+.....-.++..  -++.+++.|+.+.        .+.+||..+....  ...+..  ....
T Consensus       598 g~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~dg--------~I~iwD~~~~~~~--~~~~~~--h~~~  663 (793)
T PLN00181        598 GSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSADH--------KVYYYDLRNPKLP--LCTMIG--HSKT  663 (793)
T ss_pred             CEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCCcc--ceEecC--CCCC
Confidence            357888887653211  1111111112222  1467777776654        7889998764300  111111  1100


Q ss_pred             cccceEEEEECCEEEEEcccCCCCceeEEEeCCCC----CeEecCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD----KWKEMPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~----~W~~~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                         -..+...++..++.++   ....+.+||+.+.    .|..+.. .. .......++...++.+++.|+.++.+..|+
T Consensus       664 ---V~~v~f~~~~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~-~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        664 ---VSYVRFVDSSTLVSSS---TDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             ---EEEEEEeCCCEEEEEE---CCCEEEEEeCCCCccccCCcceEE-EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence               1233334555555531   2334668887643    2332222 11 111111222225678888888899999998


Q ss_pred             CCCCc--eEEcc----ccc-----ccccceeEEEE--CCEEEEEeeCCceEEEEEc
Q 016368          317 ADHDW--WDEVI----ELA-----ELKGAEKITAA--RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       317 ~~~~~--W~~i~----~~p-----~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~  359 (390)
                      .....  |....    ..+     ........+.+  ++...+.|..++.|.+||+
T Consensus       737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            76432  22110    010     00111222222  5566666666778888875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=91.71  E-value=9.6  Score=34.25  Aligned_cols=176  Identities=11%  Similarity=0.138  Sum_probs=89.5

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc-c
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS-R  243 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-r  243 (390)
                      .+.+||..|..=...-+||..-.-.++-.-.+.....||.+.        ..-+|+.++..    =+....+...... .
T Consensus        78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d----~~g~~~v~r~l~gHt  145 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRD----AEGNVRVSRELAGHT  145 (343)
T ss_pred             eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--------eeEEEeccccc----ccccceeeeeecCcc
Confidence            466677654433333334333222222233677888888875        67789988663    1111111111110 0


Q ss_pred             cceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE---eeCCeEEEEeCCCCcEEEEECCC
Q 016368          244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST---MNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                      ...+++. .++.-.+.   +.|..+-..+|.++.+=...   + .++.+-.++.   ..+++.|+-|+.+.....||...
T Consensus       146 gylScC~f~dD~~ilT---~SGD~TCalWDie~g~~~~~---f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  146 GYLSCCRFLDDNHILT---GSGDMTCALWDIETGQQTQV---F-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             ceeEEEEEcCCCceEe---cCCCceEEEEEcccceEEEE---e-cCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            0233443 34333333   22445566889888753322   1 2233322222   23889999999999888899887


Q ss_pred             CceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          320 DWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       320 ~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..-.+.-  +...... ++..+ +|.-+.-|.++...-+||+..
T Consensus       219 ~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  219 GQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             cceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            6544432  2221111 12222 555666655555666666655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.55  E-value=5.8  Score=39.66  Aligned_cols=119  Identities=18%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             EEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc-----ccceEEEEECCEEEEEcccCCC
Q 016368          190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS-----REAVEAVGFKGNLCMVNLKGNG  264 (390)
Q Consensus       190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~-----r~~~~~~~~~g~lyv~gg~g~~  264 (390)
                      +-++.++.||+....         ..+..+|.+|++.  .|+.-...+.....     ....+.++.++++|+..    .
T Consensus        64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t----~  128 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT----L  128 (527)
T ss_pred             CCEEECCEEEEECCC---------CcEEEEECCCCce--eeEecCCCCcccccccccccccccceEECCEEEEEc----C
Confidence            345678999985432         2688899988763  38754432211110     00123456788999863    2


Q ss_pred             CceeEEEeCCCC--CeEecCCCCCCCC-CCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368          265 AKDGAIYNVELD--KWKEMPEGMHAGW-NGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       265 ~~~~~~yd~~~~--~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~  324 (390)
                      .....++|.+++  .|+.......... ...+.++ .+|.||+-..     .++.+..||.++.+  |+.
T Consensus       129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            345778999876  5876432122111 1122333 6888776532     24688999998764  764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=91.28  E-value=15  Score=35.70  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC--CcceE
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP--ARAWL  368 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~--~~~W~  368 (390)
                      ++++..++..+++||.++++.+|..+.+.-.+...+-..|...+.+.+  ++..+..|.....+.+||+.+..  ...|.
T Consensus       448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~  527 (603)
T KOG0318|consen  448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA  527 (603)
T ss_pred             eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceee
Confidence            333337899999999999999999988776666656667777777766  55555554446689999987753  23565

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.18  E-value=11  Score=34.00  Aligned_cols=149  Identities=14%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      .++..+++--++.|+.      -..+-.||..+++-..+.....|......+- .+..+.+.|..+.        ++.-+
T Consensus        77 ~v~WsddgskVf~g~~------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK--------TlKfW  142 (347)
T KOG0647|consen   77 DVCWSDDGSKVFSGGC------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK--------TLKFW  142 (347)
T ss_pred             EEEEccCCceEEeecc------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc--------ceeec
Confidence            5555655544444432      3467889999998887765544332211111 1223444444432        55556


Q ss_pred             ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEe
Q 016368          220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTM  297 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~  297 (390)
                      |+....    =-..-.||...     +++-+... |.+++   ...+.+.+|+++..  +.+.+..++ .-.....++. 
T Consensus       143 D~R~~~----pv~t~~LPeRv-----Ya~Dv~~p-m~vVa---ta~r~i~vynL~n~~te~k~~~SpL-k~Q~R~va~f-  207 (347)
T KOG0647|consen  143 DTRSSN----PVATLQLPERV-----YAADVLYP-MAVVA---TAERHIAVYNLENPPTEFKRIESPL-KWQTRCVACF-  207 (347)
T ss_pred             ccCCCC----eeeeeecccee-----eehhccCc-eeEEE---ecCCcEEEEEcCCCcchhhhhcCcc-cceeeEEEEE-
Confidence            665433    11111233321     33333333 33331   14566779999755  444444422 2222333443 


Q ss_pred             eCCeEEEEeCCCCcEEEEECC
Q 016368          298 NEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      .+...|.+|+.+|.+......
T Consensus       208 ~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  208 QDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             ecCCceEeeeecceEEEEecC
Confidence            788899999998876666544

>PTZ00420 coronin; Provisional

Probab=91.06  E-value=19  Score=36.34  Aligned_cols=142  Identities=10%  Similarity=0.086  Sum_probs=70.5

Q ss_pred             EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCC
Q 016368          197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVEL  275 (390)
Q Consensus       197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~  275 (390)
                      .+++.||.+.        .+.+||..+...   -..+. .+..     ..+++. .+|.+++.++   ....+.+||+.+
T Consensus       139 ~iLaSgS~Dg--------tIrIWDl~tg~~---~~~i~-~~~~-----V~SlswspdG~lLat~s---~D~~IrIwD~Rs  198 (568)
T PTZ00420        139 YIMCSSGFDS--------FVNIWDIENEKR---AFQIN-MPKK-----LSSLKWNIKGNLLSGTC---VGKHMHIIDPRK  198 (568)
T ss_pred             eEEEEEeCCC--------eEEEEECCCCcE---EEEEe-cCCc-----EEEEEECCCCCEEEEEe---cCCEEEEEECCC
Confidence            4555666553        788899987651   11111 1111     123332 3677777641   234577999987


Q ss_pred             CCeE-ecCCCCCCCCCCceEEE----eeCCeEEEEeCCCC----cEEEEECCC-CceEEcccccccccceeE-EE---EC
Q 016368          276 DKWK-EMPEGMHAGWNGPAAST----MNEEELYVVNEGKG----RLSKYDADH-DWWDEVIELAELKGAEKI-TA---AR  341 (390)
Q Consensus       276 ~~W~-~~~~~~~~~~~~~~~~~----~~~g~lyv~gg~~~----~v~~yd~~~-~~W~~i~~~p~~r~~~~~-~~---~~  341 (390)
                      .+=. .+..  ..+......+.    ..++..++.+|.++    .+..||... ..-.....+  ......+ ..   ..
T Consensus       199 g~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l--d~~~~~L~p~~D~~t  274 (568)
T PTZ00420        199 QEIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI--DNASAPLIPHYDEST  274 (568)
T ss_pred             CcEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe--cCCccceEEeeeCCC
Confidence            5321 1111  11111111111    02445555555443    689999874 221111111  1111111 12   24


Q ss_pred             CEEEEEeeCCceEEEEEcCCC
Q 016368          342 GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       342 g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |.+|+.|.++..|.+||+...
T Consensus       275 g~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCEEEEEECCCeEEEEEccCC
Confidence            789999888889999998654

>smart00284 OLF Olfactomedin-like domains

Probab=90.69  E-value=8.8  Score=34.16  Aligned_cols=128  Identities=10%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             CCEEEEEcccCCCCceeEEEeC----CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNV----ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE  327 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~  327 (390)
                      ++++|+..+.+........|..    ....+.+.-. +|.+..+.+.++ .+|.||.--..+..|.+||..+.+=.....
T Consensus        34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~-Lp~~~~GtG~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~  111 (255)
T smart00284       34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHP-LPHAGQGTGVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPL  111 (255)
T ss_pred             CceEEEEccccCCCcEEEEecCHHHHhccCCceEEE-CCCccccccEEE-ECceEEEEecCCccEEEEECCCCcEEEEEe
Confidence            5778887533222344445533    2334433333 566777888887 999999987777899999999987654444


Q ss_pred             cccc----c--------cceeEEEECCEEEEEee---CCc--eEEEEEcCCCCC-cceEecCC-----CCeeEEEEE
Q 016368          328 LAEL----K--------GAEKITAARGRVCAVCE---NGE--RIMVVDVLASPA-RAWLVDPP-----RGFQVVAVH  381 (390)
Q Consensus       328 ~p~~----r--------~~~~~~~~~g~l~i~g~---~~~--~v~~~d~~~~~~-~~W~~~~p-----~g~~~~~~~  381 (390)
                      +|..    +        ...-+++-+.-|.+|-.   ..+  .|.-+|+.+-.. +.|.+..+     ..|=+||+=
T Consensus       112 Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvL  188 (255)
T smart00284      112 LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGIL  188 (255)
T ss_pred             cCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEE
Confidence            5432    1        12345666666777632   222  334567665432 45986533     455555543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.67  E-value=9.3  Score=38.21  Aligned_cols=115  Identities=11%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             EEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCC--------CCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGW--------NGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~--------~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      +.++.+|.||+..    ....+.++|.+++  .|+.-.. .+...        .....++ .+++||+ +..++.++.+|
T Consensus        64 tPvv~~g~vyv~s----~~g~v~AlDa~TGk~lW~~~~~-~~~~~~~~~~~~~~~rg~av-~~~~v~v-~t~dg~l~ALD  136 (527)
T TIGR03075        64 QPLVVDGVMYVTT----SYSRVYALDAKTGKELWKYDPK-LPDDVIPVMCCDVVNRGVAL-YDGKVFF-GTLDARLVALD  136 (527)
T ss_pred             CCEEECCEEEEEC----CCCcEEEEECCCCceeeEecCC-CCcccccccccccccccceE-ECCEEEE-EcCCCEEEEEE
Confidence            3456799999974    2235778998875  6886443 11110        1122343 6778775 44577999999


Q ss_pred             CCCCc--eEEccc-cccc-ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe
Q 016368          317 ADHDW--WDEVIE-LAEL-KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV  369 (390)
Q Consensus       317 ~~~~~--W~~i~~-~p~~-r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~  369 (390)
                      .++.+  |+.-.. .... ....+-++.+|+||+-...     ...+..+|..+.. ..|..
T Consensus       137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~  197 (527)
T TIGR03075       137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRR  197 (527)
T ss_pred             CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc-eeEec
Confidence            98765  765321 1111 1122345568888775321     3479999998764 36884

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.58  E-value=24  Score=37.28  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=94.0

Q ss_pred             CEEEEEeccC-CCC-CCCccCeEEEEECCC-CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEe
Q 016368          196 GVVYVASGVG-AHY-RGDVARSMKKWDLKS-DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       196 ~~lyv~GG~~-~~~-~~~~~~~~~~yd~~t-~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      +..|++|-.- ... .....-.+.+|.... +.    -+.+..+.....   ..+.+.+||++..-     -+..+-.|+
T Consensus       787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~----L~~v~e~~v~Ga---v~aL~~fngkllA~-----In~~vrLye  854 (1096)
T KOG1897|consen  787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS----LELVAETVVKGA---VYALVEFNGKLLAG-----INQSVRLYE  854 (1096)
T ss_pred             ceEEEEEEEeeccCCCCcccceEEEEEEecCCc----eeeeeeeeeccc---eeehhhhCCeEEEe-----cCcEEEEEE
Confidence            5667776431 110 112233566666655 55    677777654433   37778899998765     456677898


Q ss_pred             CCCCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeC
Q 016368          273 VELDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCEN  350 (390)
Q Consensus       273 ~~~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~  350 (390)
                      ..+++ -+.-.. ...+.....+.+ .++.|++-.-... .+..|+...+...+++.--.+++-.++..+++..|+.+..
T Consensus       855 ~t~~~eLr~e~~-~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~  932 (1096)
T KOG1897|consen  855 WTTERELRIECN-ISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN  932 (1096)
T ss_pred             ccccceehhhhc-ccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence            87772 221112 222222233343 7788887665444 7889999988899998777777777888889999998766


Q ss_pred             CceEEEEE
Q 016368          351 GERIMVVD  358 (390)
Q Consensus       351 ~~~v~~~d  358 (390)
                      ..++++..
T Consensus       933 ~gNlf~v~  940 (1096)
T KOG1897|consen  933 SGNLFTVR  940 (1096)
T ss_pred             cccEEEEE
Confidence            55555553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.50  E-value=13  Score=33.60  Aligned_cols=130  Identities=8%  Similarity=0.043  Sum_probs=70.8

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA  294 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  294 (390)
                      .+-.||..++.    -+..-....+     -..++..+..--+.|+   -...+-.||+.+..=..+.. -..+-  .++
T Consensus        36 slrlYdv~~~~----l~~~~~~~~p-----lL~c~F~d~~~~~~G~---~dg~vr~~Dln~~~~~~igt-h~~~i--~ci  100 (323)
T KOG1036|consen   36 SLRLYDVPANS----LKLKFKHGAP-----LLDCAFADESTIVTGG---LDGQVRRYDLNTGNEDQIGT-HDEGI--RCI  100 (323)
T ss_pred             cEEEEeccchh----hhhheecCCc-----eeeeeccCCceEEEec---cCceEEEEEecCCcceeecc-CCCce--EEE
Confidence            67788888776    2222111111     1444545544333421   23446689999887555554 11111  122


Q ss_pred             EEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       295 ~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ........++-|++++.+..+|+....  .+...-.....+++.+.++ ..|+|..+..+.+||+...
T Consensus       101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  101 EYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             EeeccCCeEEEcccCccEEEEeccccc--cccccccCceEEEEeccCC-EEEEeecCceEEEEEcccc
Confidence            211234556788899999999998611  1111112223444555554 5555677889999999875

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=90.27  E-value=13  Score=33.16  Aligned_cols=169  Identities=13%  Similarity=0.075  Sum_probs=91.9

Q ss_pred             ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC---Ccccc---ceEE
Q 016368          175 TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG---RFSRE---AVEA  248 (390)
Q Consensus       175 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~---~~~r~---~~~~  248 (390)
                      +..+.-.+|.+-.+.+.++++|.+|.--        ...+.+-.||+.++.. -.+..++.-...   .....   ....
T Consensus        58 ~~~~~~~Lp~~~~GtG~vVYngslYY~~--------~~s~~IvkydL~t~~v-~~~~~L~~A~~~n~~~y~~~~~t~iD~  128 (250)
T PF02191_consen   58 RSSRTYKLPYPWQGTGHVVYNGSLYYNK--------YNSRNIVKYDLTTRSV-VARRELPGAGYNNRFPYYWSGYTDIDF  128 (250)
T ss_pred             CCceEEEEeceeccCCeEEECCcEEEEe--------cCCceEEEEECcCCcE-EEEEECCccccccccceecCCCceEEE
Confidence            3333344556677788889999999763        3456899999999871 003334332111   00000   1334


Q ss_pred             EEECCEEEEEcccCC-CC-ceeEEEeCCC----CCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC----cEEEEECC
Q 016368          249 VGFKGNLCMVNLKGN-GA-KDGAIYNVEL----DKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG----RLSKYDAD  318 (390)
Q Consensus       249 ~~~~g~lyv~gg~g~-~~-~~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~----~v~~yd~~  318 (390)
                      ++-++-|+++-.... .+ -.+...|+.+    .+|..-   .+....+.+..  +=|.||++...+.    -.+.||..
T Consensus       129 AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~---~~k~~~~naFm--vCGvLY~~~s~~~~~~~I~yafDt~  203 (250)
T PF02191_consen  129 AVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS---YPKRSAGNAFM--VCGVLYATDSYDTRDTEIFYAFDTY  203 (250)
T ss_pred             EEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec---cCchhhcceee--EeeEEEEEEECCCCCcEEEEEEECC
Confidence            445556777632211 11 1223566654    467753   22333322222  3489999987542    56889999


Q ss_pred             CCceEEccccccc--ccceeEEEE---CCEEEEEeeCCceEEEEEcC
Q 016368          319 HDWWDEVIELAEL--KGAEKITAA---RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       319 ~~~W~~i~~~p~~--r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~  360 (390)
                      +++=..+. ++..  -...++...   +.+||+. .+ ..++.|++.
T Consensus       204 t~~~~~~~-i~f~~~~~~~~~l~YNP~dk~LY~w-d~-G~~v~Y~v~  247 (250)
T PF02191_consen  204 TGKEEDVS-IPFPNPYGNISMLSYNPRDKKLYAW-DN-GYQVTYDVR  247 (250)
T ss_pred             CCceecee-eeeccccCceEeeeECCCCCeEEEE-EC-CeEEEEEEE
Confidence            87665433 3332  234455554   5678886 33 356666653

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=90.26  E-value=14  Score=34.27  Aligned_cols=134  Identities=18%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CCcEEEeCCCC-----ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          164 ASPLAFNPQSN-----TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       164 ~~~~~~dp~t~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      ..+++|+....     +.+.+......-.-.+++.++++|.+..|          +.+.+|+...+.   ++...+.+..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~---~l~~~~~~~~  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG----------NKLYVYDLDNSK---TLLKKAFYDS  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET----------TEEEEEEEETTS---SEEEEEEE-B
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec----------CEEEEEEccCcc---cchhhheecc
Confidence            67999998884     55555444444445677777999666554          266777776554   1777776655


Q ss_pred             CCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCC--cEEEE
Q 016368          239 GRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKG--RLSKY  315 (390)
Q Consensus       239 ~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~--~v~~y  315 (390)
                      +..   ..+..+.++.+++-.  -..+-....|+.+..+-..+.. -..++...++.. + ++..++++...+  .++.|
T Consensus       129 ~~~---i~sl~~~~~~I~vgD--~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~-l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  129 PFY---ITSLSVFKNYILVGD--AMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEF-LVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             SSS---EEEEEEETTEEEEEE--SSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEE-E-SSSEEEEEETTSEEEEEEE
T ss_pred             eEE---EEEEeccccEEEEEE--cccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEE-ecCCcEEEEEcCCCeEEEEEE
Confidence            444   466777888777642  0112223467876666777665 223333334444 4 666555555566  45566


Q ss_pred             EC
Q 016368          316 DA  317 (390)
Q Consensus       316 d~  317 (390)
                      ++
T Consensus       202 ~~  203 (321)
T PF03178_consen  202 NP  203 (321)
T ss_dssp             -S
T ss_pred             CC
Confidence            65

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.95  E-value=21  Score=35.04  Aligned_cols=189  Identities=10%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSN--TWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ..++.+++.|...      ..+.+||...+  .-+.+..+....  ++++. ..+.+++.|+.+.        .+.++|.
T Consensus       212 s~d~~~l~s~s~D------~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~--------tvriWd~  275 (456)
T KOG0266|consen  212 SPDGSYLLSGSDD------KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG--------TVRIWDV  275 (456)
T ss_pred             CCCCcEEEEecCC------ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC--------cEEEEec
Confidence            3344455555422      35777887333  223444443333  33332 2557888888775        7889999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeE---ecCCCCCCCCCCceEEEee
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK---EMPEGMHAGWNGPAASTMN  298 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~  298 (390)
                      ++.+    -...-.......   ......-++.+++.+   .......+||+.++.-.   .+.. .........+....
T Consensus       276 ~~~~----~~~~l~~hs~~i---s~~~f~~d~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp  344 (456)
T KOG0266|consen  276 RTGE----CVRKLKGHSDGI---SGLAFSPDGNLLVSA---SYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP  344 (456)
T ss_pred             cCCe----EEEeeeccCCce---EEEEECCCCCEEEEc---CCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence            9866    332222222111   122223466666663   11334568999888743   2222 11211112222224


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCc----eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDW----WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++..+.+..++.+..||.....    |......  .+..+..+.. +++..+.|..+..|.+||+.+.
T Consensus       345 ~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  345 NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             CCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            66666666666677777777543    2222221  1222233323 6777777777889999999864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.90  E-value=23  Score=35.49  Aligned_cols=174  Identities=9%  Similarity=0.073  Sum_probs=93.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      +.+.+|+..++.-..+-.-  .-.--.++.+++.+.|.|.++.        .+-+||+.+.+      -+..+..-..  
T Consensus       311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~--------~v~VW~~~~~~------cl~sl~gH~~--  372 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG--------TVKVWDPRTGK------CLKSLSGHTG--  372 (537)
T ss_pred             ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc--------eEEEEEhhhce------eeeeecCCcc--
Confidence            4566777665443322110  0011123344666677666653        78889988765      2222211000  


Q ss_pred             cceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce
Q 016368          244 EAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW  322 (390)
Q Consensus       244 ~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W  322 (390)
                       ......+++ ..++-|   .-...+.++|+.+.+ +.+.. ........... .+.++.++-+..++.+..||.++..-
T Consensus       373 -~V~sl~~~~~~~~~Sg---s~D~~IkvWdl~~~~-~c~~t-l~~h~~~v~~l-~~~~~~Lvs~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  373 -RVYSLIVDSENRLLSG---SLDTTIKVWDLRTKR-KCIHT-LQGHTSLVSSL-LLRDNFLVSSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             -eEEEEEecCcceEEee---eeccceEeecCCchh-hhhhh-hcCCccccccc-ccccceeEeccccccEEEeecccCce
Confidence             122224555 444443   122456688887775 21111 11111111111 26788888888899999999988776


Q ss_pred             EEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCC
Q 016368          323 DEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       323 ~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .+...-+ +.....+...+....+.......+.++|+....
T Consensus       446 ~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  446 LRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             eeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence            6655433 333344444444666666777788888987753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.77  E-value=18  Score=34.14  Aligned_cols=187  Identities=12%  Similarity=0.128  Sum_probs=104.1

Q ss_pred             EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .+.+-+..|++..+.      ...+..+|..|+.-+..=+-..+-.-.+++-+ ++.-+|.|+-+.        .+..+|
T Consensus       275 i~wSPDdryLlaCg~------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wd  340 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGF------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWD  340 (519)
T ss_pred             EEECCCCCeEEecCc------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEec
Confidence            334445555554332      23477888888866554332233334444444 677788877653        455566


Q ss_pred             CCC---CccccccEEcccCCCCCccccceEEE-EECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEE
Q 016368          221 LKS---DREDWKWEKKAQLKDGRFSREAVEAV-GFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAS  295 (390)
Q Consensus       221 ~~t---~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  295 (390)
                      ...   +.    |+-+...   +.    +.++ ..+|+ ++.++    -.+....|+.++..=..+-. ...+-.  +.+
T Consensus       341 lDgn~~~~----W~gvr~~---~v----~dlait~Dgk~vl~v~----~d~~i~l~~~e~~~dr~lis-e~~~it--s~~  402 (519)
T KOG0293|consen  341 LDGNILGN----WEGVRDP---KV----HDLAITYDGKYVLLVT----VDKKIRLYNREARVDRGLIS-EEQPIT--SFS  402 (519)
T ss_pred             CCcchhhc----ccccccc---ee----EEEEEcCCCcEEEEEe----cccceeeechhhhhhhcccc-ccCcee--EEE
Confidence            543   34    8765541   11    3333 34554 66663    33445678877654332222 122222  333


Q ss_pred             EeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccc-cc---eeEEEECCEEEEEe-eCCceEEEEEcCCC
Q 016368          296 TMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK-GA---EKITAARGRVCAVC-ENGERIMVVDVLAS  362 (390)
Q Consensus       296 ~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r-~~---~~~~~~~g~l~i~g-~~~~~v~~~d~~~~  362 (390)
                      ..-++++.++.-.+..+..||.+  .|+.+......+ ..   .+|...++.-+|.+ +.+.+|++|+..+.
T Consensus       403 iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  403 ISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             EcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence            23789999998888899999998  566665443332 22   23444444345544 44668999997766

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.63  E-value=11  Score=32.32  Aligned_cols=158  Identities=15%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368          189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG  268 (390)
Q Consensus       189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~  268 (390)
                      .+....+|+||.--|..+      ...+.++|..+++.  .|++--. +...+   +-+.+..++.+|..     --+++
T Consensus        49 QGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~--~~s~~l~-~~~~F---gEGit~~gd~~y~L-----Tw~eg  111 (262)
T COG3823          49 QGLEYLDGHILESTGLYG------FSKIRVSDLTTGQE--IFSEKLA-PDTVF---GEGITKLGDYFYQL-----TWKEG  111 (262)
T ss_pred             cceeeeCCEEEEeccccc------cceeEEEeccCceE--EEEeecC-Ccccc---ccceeeccceEEEE-----Eeccc
Confidence            345566888888877654      35788999997762  1443222 22223   45677889999998     23334


Q ss_pred             EEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc------ccccceeEEEECC
Q 016368          269 AIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA------ELKGAEKITAARG  342 (390)
Q Consensus       269 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p------~~r~~~~~~~~~g  342 (390)
                      ..|-...++..++.. .+..-.+.+++. -+..|.+-.| +..+..-||++-  .+.....      +-..--.+..++|
T Consensus       112 vaf~~d~~t~~~lg~-~~y~GeGWgLt~-d~~~LimsdG-satL~frdP~tf--a~~~~v~VT~~g~pv~~LNELE~VdG  186 (262)
T COG3823         112 VAFKYDADTLEELGR-FSYEGEGWGLTS-DDKNLIMSDG-SATLQFRDPKTF--AELDTVQVTDDGVPVSKLNELEWVDG  186 (262)
T ss_pred             eeEEEChHHhhhhcc-cccCCcceeeec-CCcceEeeCC-ceEEEecCHHHh--hhcceEEEEECCeecccccceeeecc
Confidence            444444556666666 555555667774 4444444433 445666677652  2222111      1111223555677


Q ss_pred             EEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          343 RVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      .||.--=....|+.+|+.+...-.|.
T Consensus       187 ~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         187 ELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             EEEEeeeeecceEEEcCCCCcEEEEE
Confidence            77753333456777777776555564

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.60  E-value=22  Score=34.84  Aligned_cols=175  Identities=9%  Similarity=0.001  Sum_probs=96.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..++.++-.+.+-..+-.+.  +...+.+..  +|...++|-.++        .+++||.++..      .+..+.....
T Consensus       197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g--------~v~iwD~~~~k------~~~~~~~~h~  260 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDG--------TVQIWDVKEQK------KTRTLRGSHA  260 (484)
T ss_pred             ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCC--------eEEEEehhhcc------ccccccCCcC
Confidence            46777888777766665554  444455544  467777765544        78999998766      3444433111


Q ss_pred             cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      .  ..++...++.+...|.   ....+..+|.....=. +..........+++....++..+.-||.++.+.+||.....
T Consensus       261 ~--rvg~laW~~~~lssGs---r~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  261 S--RVGSLAWNSSVLSSGS---RDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             c--eeEEEeccCceEEEec---CCCcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence            1  2445556777777741   2334556665432100 00001122222333333678888889999999999984322


Q ss_pred             eEEcccccccccc---eeEEEECCEEEEEeeC--CceEEEEEcCCC
Q 016368          322 WDEVIELAELKGA---EKITAARGRVCAVCEN--GERIMVVDVLAS  362 (390)
Q Consensus       322 W~~i~~~p~~r~~---~~~~~~~g~l~i~g~~--~~~v~~~d~~~~  362 (390)
                      +..  ..-.+..+   .+.+-+...|...|++  +..|-+||+.+.
T Consensus       335 p~~--~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  335 PKF--TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             ccE--EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence            221  11122222   2233345667777765  346778888764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=89.33  E-value=17  Score=34.60  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=73.0

Q ss_pred             ceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCC
Q 016368          188 WCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGA  265 (390)
Q Consensus       188 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~  265 (390)
                      ..++++. +|-|+..|-.+.        .+.+||.++..      .++.+|..-.+  --+..+. ||...+.+   ...
T Consensus       350 ~ts~~fHpDgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~~--vk~i~FsENGY~Lat~---add  410 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTGP--VKAISFSENGYWLATA---ADD  410 (506)
T ss_pred             eEEeeEcCCceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCCc--eeEEEeccCceEEEEE---ecC
Confidence            4444444 566776655443        67889998776      34444432110  1223333 44433331   122


Q ss_pred             ceeEEEeCCCCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEEC
Q 016368          266 KDGAIYNVELDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAAR  341 (390)
Q Consensus       266 ~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~  341 (390)
                      ..+.++|+.+.+ ...+..  +......++.....|....++|.+=.++.|+-.+..|+++..++...+-...+.++
T Consensus       411 ~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg  485 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG  485 (506)
T ss_pred             CeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence            336788887553 332222  12222223332234777777776668888999999999999887665444455553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.25  E-value=20  Score=33.92  Aligned_cols=185  Identities=17%  Similarity=0.236  Sum_probs=100.7

Q ss_pred             CcEEEeCCCCc--eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          165 SPLAFNPQSNT--WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       165 ~~~~~dp~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      .++.+|+.+.+  |+................-+|+||+-...         ..+++||..+.+.  .|+.-.... ... 
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---------g~~y~ld~~~G~~--~W~~~~~~~-~~~-  145 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---------GKLYALDASTGTL--VWSRNVGGS-PYY-  145 (370)
T ss_pred             cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---------ceEEEEECCCCcE--EEEEecCCC-eEE-
Confidence            78889999886  86533210011111122227887764321         1688999965542  288655441 112 


Q ss_pred             ccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCC-CCCCCCCceEEEeeCCeEEEEeCC-CCcEEEEECC
Q 016368          243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEG-MHAGWNGPAASTMNEEELYVVNEG-KGRLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~g~lyv~gg~-~~~v~~yd~~  318 (390)
                        ....++.++.+|+..    ......++|.++.  .|+.-... .......... . .++.+|+-... ++.++.+|++
T Consensus       146 --~~~~v~~~~~v~~~s----~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         146 --ASPPVVGDGTVYVGT----DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             --ecCcEEcCcEEEEec----CCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEcc
Confidence              344666788888762    2344566777654  68754331 1122222222 3 67777766432 4579999997


Q ss_pred             CC--ceEEccccccc--------ccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecCC
Q 016368          319 HD--WWDEVIELAEL--------KGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPP  372 (390)
Q Consensus       319 ~~--~W~~i~~~p~~--------r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~p  372 (390)
                      +.  .|+.-...+..        ......+..++.+|.. .....++.+|..+.. ..|....+
T Consensus       218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G~-~~W~~~~~  279 (370)
T COG1520         218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTGE-LIWSFPAG  279 (370)
T ss_pred             CCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCCc-eEEEEecc
Confidence            64  48753222211        2223345556666555 334458888877653 36887664

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=89.18  E-value=16  Score=32.60  Aligned_cols=98  Identities=12%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CCceeEEEeCC-CCCeEecCCCCCCC--CCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE
Q 016368          264 GAKDGAIYNVE-LDKWKEMPEGMHAG--WNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA  340 (390)
Q Consensus       264 ~~~~~~~yd~~-~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~  340 (390)
                      ..+.+-+++.. .++|..... +..+  |.--+++....|++.+.+.++..+..|.-..+.|..+..+-.+-....+++.
T Consensus        35 ~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw  113 (312)
T KOG0645|consen   35 TDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAW  113 (312)
T ss_pred             CCceEEEEecCCCCcEEEEEe-ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEE
Confidence            44566788887 678887654 3222  2222333235788888888888888898888999998877666555556665


Q ss_pred             --CCEEEEEeeCCceEEEEEcCCC
Q 016368          341 --RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 --~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                        .|......+++++||++++...
T Consensus       114 s~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen  114 SASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             cCCCCEEEEeeCCCeEEEEEecCC
Confidence              5666666688999999998843

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=88.77  E-value=18  Score=32.75  Aligned_cols=128  Identities=11%  Similarity=0.082  Sum_probs=66.9

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSRE  244 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~  244 (390)
                      .+..|+..+++-+.  .+.....-..++..+..=.+.||.++        .+..||..+..    =..+..-..+.    
T Consensus        36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~----~~~igth~~~i----   97 (323)
T KOG1036|consen   36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGN----EDQIGTHDEGI----   97 (323)
T ss_pred             cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCc----ceeeccCCCce----
Confidence            56677777662211  11111122344555555555666664        78899999987    34444322221    


Q ss_pred             ceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC
Q 016368          245 AVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       245 ~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~  320 (390)
                       .++...  .|++ |.|   .-...+..+|+....   .......+....++  .+.|...|+|+.+..+..||..+.
T Consensus        98 -~ci~~~~~~~~v-Isg---sWD~~ik~wD~R~~~---~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   98 -RCIEYSYEVGCV-ISG---SWDKTIKFWDPRNKV---VVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             -EEEEeeccCCeE-EEc---ccCccEEEEeccccc---cccccccCceEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence             112212  3333 332   134567778876511   11101122222222  367888889888889999998754

>PRK13684 Ycf48-like protein; Provisional

Probab=88.69  E-value=21  Score=33.38  Aligned_cols=172  Identities=12%  Similarity=0.070  Sum_probs=87.7

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEE-EECCCCccccccEEcccCCCCCccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKK-WDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~-yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      .+++=+-.-.+|+.+.... .-..+.+....+..|++.|...        .++. .|....+    |+.+.......   
T Consensus       153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~---  216 (334)
T PRK13684        153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR---  216 (334)
T ss_pred             eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc---
Confidence            3444444456899876433 2233444444444445444432        1111 2344456    99886533222   


Q ss_pred             cceEEEE-ECCEEEEEcccCCCCceeEEEe-C-CCCCeEecCCCCCCC-CCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYN-V-ELDKWKEMPEGMHAG-WNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd-~-~~~~W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                       ..+++. -++.++++|     ......+. . .-.+|+.+..+.... .....++...++.++++|. .+.++.-....
T Consensus       217 -l~~i~~~~~g~~~~vg-----~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G  289 (334)
T PRK13684        217 -LQSMGFQPDGNLWMLA-----RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGG  289 (334)
T ss_pred             -ceeeeEcCCCCEEEEe-----cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCC
Confidence             244443 477888884     22223352 2 234899765421111 1222333324678887775 45555444445


Q ss_pred             CceEEccccc-ccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368          320 DWWDEVIELA-ELKGAEKITAA-RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       320 ~~W~~i~~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .+|+.+.... .+...+.++.. ++++|++ +....|+.++..
T Consensus       290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~  331 (334)
T PRK13684        290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS  331 (334)
T ss_pred             CCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence            7899986322 22234445544 7788887 444477776643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.49  E-value=32  Score=35.23  Aligned_cols=186  Identities=12%  Similarity=0.145  Sum_probs=98.6

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCcc
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDRE  226 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~  226 (390)
                      |.-+.+|+.      .+..+.+|+-.+.+.---.+-...|.....-.-+|++.+.|+.+.        .+-+||..+.- 
T Consensus       319 GDWiA~g~~------klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf-  383 (893)
T KOG0291|consen  319 GDWIAFGCS------KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF-  383 (893)
T ss_pred             CCEEEEcCC------ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC--------cEEEEeccCce-
Confidence            555555543      356888888666654433332333333323333788988888775        77888887754 


Q ss_pred             ccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          227 DWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       227 ~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                         .-.-  +.....   +++++.  ..|+..+..   .-..++-.+|+... .++....  |.+....++++...|.|.
T Consensus       384 ---C~vT--FteHts---~Vt~v~f~~~g~~llss---SLDGtVRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  384 ---CFVT--FTEHTS---GVTAVQFTARGNVLLSS---SLDGTVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             ---EEEE--eccCCC---ceEEEEEEecCCEEEEe---ecCCeEEeeeecccceeeeecC--CCceeeeEEEEcCCCCEE
Confidence               2111  111111   233332  244444431   01223446776643 3344333  233333344422239999


Q ss_pred             EEeCCCC-cEEEEECCCCceEEccccccccccee--EEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          304 VVNEGKG-RLSKYDADHDWWDEVIELAELKGAEK--ITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~--~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+.+. .|++|+.+|++-..+-.  .+-+...  +....+.+.+-|+=++.|-+||+...
T Consensus       451 ~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             EeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            9998776 89999999887655532  2212111  22234445554455678888888665

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=88.38  E-value=11  Score=36.24  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             CceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccc-eeEEEE-C
Q 016368          265 AKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA-EKITAA-R  341 (390)
Q Consensus       265 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~-~  341 (390)
                      ...+..+|++|++=..-   +.....-..+-. .-+.++|++||.++.|..||..+++  .+.+.....+. -.+..+ +
T Consensus       279 D~~lKlwDtETG~~~~~---f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSR---FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             ceeeeeeccccceEEEE---EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccC
Confidence            34455788887754322   111111111111 1344999999999999999998876  22222222221 122222 6


Q ss_pred             CEEEEEeeCCceEEEEEcCCC
Q 016368          342 GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       342 g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |+-+|-..+..++.+||...+
T Consensus       354 g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             CceEeeeccCccEEEEEcCCC
Confidence            666776666667777776553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=87.99  E-value=27  Score=33.85  Aligned_cols=164  Identities=9%  Similarity=0.029  Sum_probs=78.1

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..++.+|..+++-..+...+. ....               ....-++..+++.....+    .-++|.+|..+++.+.+
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g-~~~~---------------~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRG-HNGA---------------PAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQL  287 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCC-ccCc---------------eeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEee
Confidence            457778887766555544332 1110               122234444444332111    13588899988876665


Q ss_pred             CCCCCCCcceEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE-EEE
Q 016368          180 PQLSIPRRWCAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCM  257 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv  257 (390)
                      ...... .....-.-+++ |++.+...+      ...++.++..+..    -+.+...  . .    .....-+|+ +++
T Consensus       288 t~~~~~-~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~----~~~l~~~--~-~----~~~~SpDG~~ia~  349 (429)
T PRK01742        288 TSGAGN-NTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGG----ASLVGGR--G-Y----SAQISADGKTLVM  349 (429)
T ss_pred             ccCCCC-cCCEEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEEecCC--C-C----CccCCCCCCEEEE
Confidence            432211 11111122454 554433222      2366666666554    2333111  0 1    111223444 444


Q ss_pred             EcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 016368          258 VNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG  310 (390)
Q Consensus       258 ~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~  310 (390)
                      .+     ......+|+.++++..+....  ....+.. . .+|++++++..++
T Consensus       350 ~~-----~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~-s-PdG~~i~~~s~~g  393 (429)
T PRK01742        350 IN-----GDNVVKQDLTSGSTEVLSSTF--LDESPSI-S-PNGIMIIYSSTQG  393 (429)
T ss_pred             Ec-----CCCEEEEECCCCCeEEecCCC--CCCCceE-C-CCCCEEEEEEcCC
Confidence            42     244667899988887665421  1122222 2 7888777776554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=87.83  E-value=28  Score=33.78  Aligned_cols=180  Identities=13%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ...++++|......+.+......-.... ..-+++.+++.....     ....++++|..++.    =+.+...+...  
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~-wSPDG~~la~~s~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~--  242 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPA-WSPDGTKLAYVSFES-----KKPVVYVHDLATGR----RRVVANFKGSN--  242 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccce-EcCCCCEEEEEEccC-----CCcEEEEEECCCCC----EEEeecCCCCc--
Confidence            3568888875443333322111111111 112444333333221     23468999998876    44444333211  


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCC--cEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKG--RLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~--~v~~yd~~  318 (390)
                        ......-+|+ +++.. ...+....+.+|..++..+.+.. -......+. .. .+|+ |++.....+  .++.+|..
T Consensus       243 --~~~~~SPDG~~la~~~-~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~-wS-pDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        243 --SAPAWSPDGRTLAVAL-SRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPF-FS-PDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             --cceEECCCCCEEEEEE-ccCCCceEEEEECCCCCcEECCC-CCCCCcCeE-Ec-CCCCEEEEEecCCCCcEEEEEECC
Confidence              1222223554 44331 12233556778887776666544 111111222 22 5665 444332222  78888887


Q ss_pred             CCceEEcccccccccceeEEE-ECC-EEEEEeeCC--ceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITA-ARG-RVCAVCENG--ERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~-~~g-~l~i~g~~~--~~v~~~d~~~~  362 (390)
                      +...+.+....  ........ -+| .|+.....+  ..++++|+.+.
T Consensus       317 ~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        317 GGAAQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCceEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            77766654211  11112222 244 454443222  36888887664

>PRK10115 protease 2; Provisional

Probab=87.47  E-value=39  Score=35.11  Aligned_cols=185  Identities=7%  Similarity=-0.056  Sum_probs=92.5

Q ss_pred             CCCCcEEEeCCCCcee--cCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEEC--CCCccccccEEcccC
Q 016368          162 ALASPLAFNPQSNTWF--FGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDL--KSDREDWKWEKKAQL  236 (390)
Q Consensus       162 ~~~~~~~~dp~t~~W~--~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~~~~~W~~~~~~  236 (390)
                      ...++++++..|..-.  .+-.-+........... +++-.++.....     ..+.++.|+.  .+..    |..+-..
T Consensus       197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~----~~~~~~~  267 (686)
T PRK10115        197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAE----PFVFLPR  267 (686)
T ss_pred             CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCC----ceEEEEC
Confidence            3478999999888332  22111111222222223 444333433332     3356788884  2344    4433333


Q ss_pred             CCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC-CCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--cEE
Q 016368          237 KDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE-LDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--RLS  313 (390)
Q Consensus       237 ~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--~v~  313 (390)
                      +...    .+.....++.+|+..-.+.........++. +++|+.+-+ ......-..+.. .++.|++....++  .++
T Consensus       268 ~~~~----~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~i~~~~~-~~~~l~~~~~~~g~~~l~  341 (686)
T PRK10115        268 RKDH----EYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP-PRENIMLEGFTL-FTDWLVVEERQRGLTSLR  341 (686)
T ss_pred             CCCC----EEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEEC-CCCCCEEEEEEE-ECCEEEEEEEeCCEEEEE
Confidence            3221    244445578899885222222334556665 578988766 222222234444 6788888776555  778


Q ss_pred             EEECCCCceEEcccccccccceeEEE---E-CCEEEEEeeC---CceEEEEEcCCC
Q 016368          314 KYDADHDWWDEVIELAELKGAEKITA---A-RGRVCAVCEN---GERIMVVDVLAS  362 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~~~~~~---~-~g~l~i~g~~---~~~v~~~d~~~~  362 (390)
                      ++|..+.....+. ++.+.....+..   . ++.+++.-..   -..++.+|+.+.
T Consensus       342 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        342 QINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             EEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            8887655555443 111211111111   1 2445543322   348899998775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.43  E-value=19  Score=31.48  Aligned_cols=181  Identities=12%  Similarity=0.079  Sum_probs=99.2

Q ss_pred             CCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCC
Q 016368           96 FNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSN  174 (390)
Q Consensus        96 ~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~  174 (390)
                      +.+...++++|..|++-.+        ++.+   |.+.      ...+..+.. -+++.|.      .-..+-.||..++
T Consensus        77 ~GgDk~v~vwDV~TGkv~R--------r~rg---H~aq------VNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~  133 (307)
T KOG0316|consen   77 CGGDKAVQVWDVNTGKVDR--------RFRG---HLAQ------VNTVRFNEESSVVASGS------FDSSVRLWDCRSR  133 (307)
T ss_pred             CCCCceEEEEEcccCeeee--------eccc---ccce------eeEEEecCcceEEEecc------ccceeEEEEcccC
Confidence            3455678999998875332        1110   1111      145555543 3333332      2246788999999


Q ss_pred             ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCE
Q 016368          175 TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGN  254 (390)
Q Consensus       175 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~  254 (390)
                      +.+.+.-+...+..-..+.+.+...|.|..++        .+..||+..++     .....+..+.-    .....-++.
T Consensus       134 s~ePiQildea~D~V~Si~v~~heIvaGS~DG--------tvRtydiR~G~-----l~sDy~g~pit----~vs~s~d~n  196 (307)
T KOG0316|consen  134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG--------TVRTYDIRKGT-----LSSDYFGHPIT----SVSFSKDGN  196 (307)
T ss_pred             CCCccchhhhhcCceeEEEecccEEEeeccCC--------cEEEEEeecce-----eehhhcCCcce----eEEecCCCC
Confidence            99888888888888888889999888887765        67889998877     23333444321    222223444


Q ss_pred             EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCCcEEEEECCCC
Q 016368          255 LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKGRLSKYDADHD  320 (390)
Q Consensus       255 lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~yd~~~~  320 (390)
                      ..+.|   .-.......|-++++--..-.+.....+..-.+. .+..-.|++| .+|.++.||....
T Consensus       197 c~La~---~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  197 CSLAS---SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             EEEEe---eccceeeecccchhHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEEEeccc
Confidence            44442   1112233455555432111110111111122222 3444455555 5679999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.75  E-value=33  Score=33.58  Aligned_cols=146  Identities=15%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCC-ccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSD-REDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      +++ |+++|..+       ..+.+||.+.+ ..   -+.+.......     ++++ .-.|.+++.|   .+...+.++|
T Consensus       214 d~~-~l~s~s~D-------~tiriwd~~~~~~~---~~~l~gH~~~v-----~~~~f~p~g~~i~Sg---s~D~tvriWd  274 (456)
T KOG0266|consen  214 DGS-YLLSGSDD-------KTLRIWDLKDDGRN---LKTLKGHSTYV-----TSVAFSPDGNLLVSG---SDDGTVRIWD  274 (456)
T ss_pred             CCc-EEEEecCC-------ceEEEeeccCCCeE---EEEecCCCCce-----EEEEecCCCCEEEEe---cCCCcEEEEe
Confidence            455 55555544       37889999544 20   22333333222     3333 3455677773   2345677899


Q ss_pred             CCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE---EcccccccccceeEEEE--CCEEEEE
Q 016368          273 VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD---EVIELAELKGAEKITAA--RGRVCAV  347 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~---~i~~~p~~r~~~~~~~~--~g~l~i~  347 (390)
                      ..+.+-...-. -.... ..++....+|.+++.+..++.+.+||..+..-.   .+....... ....+..  +++..+.
T Consensus       275 ~~~~~~~~~l~-~hs~~-is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  275 VRTGECVRKLK-GHSDG-ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLS  351 (456)
T ss_pred             ccCCeEEEeee-ccCCc-eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEE
Confidence            98854333221 11111 112222368888888888999999999987632   222221221 2233333  5555555


Q ss_pred             eeCCceEEEEEcCCC
Q 016368          348 CENGERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~~~v~~~d~~~~  362 (390)
                      +..+..+..||+...
T Consensus       352 ~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSG  366 (456)
T ss_pred             ecCCCeEEEEEccCC
Confidence            455668888888764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=86.50  E-value=33  Score=33.29  Aligned_cols=178  Identities=10%  Similarity=0.002  Sum_probs=89.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|..+++-+.+...+..-... ...-+| +|++.....+      ...++++|..++.    .+.+.......  
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~--  289 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNN--  289 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCc--
Confidence            57899999888766665443221111 111244 4655433221      2368999999888    77665433211  


Q ss_pred             ccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEE-eCCC--CcEEEEECC
Q 016368          243 REAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV-NEGK--GRLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~-gg~~--~~v~~yd~~  318 (390)
                        ......-+|+ |+... ...+...++.+|+.+..-+.+.. . .......... .+|+.+++ ....  ..++.+|.+
T Consensus       290 --~~~~wSPDG~~I~f~s-~~~g~~~Iy~~d~~~g~~~~lt~-~-~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        290 --TEPTWFPDSQNLAYTS-DQAGRPQVYKVNINGGAPQRITW-E-GSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             --CceEECCCCCEEEEEe-CCCCCceEEEEECCCCCeEEeec-C-CCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC
Confidence              1222223555 43332 11123356677887776665533 1 1111112222 55654444 4332  278999999


Q ss_pred             CCceEEcccccccccceeEEEECCEEEEEeeC-C--ceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAARGRVCAVCEN-G--ERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~-~--~~v~~~d~~~~  362 (390)
                      ++.++.+....  ........-+|+..++... +  ..++++++...
T Consensus       364 ~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        364 TGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             CCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            99888776321  1111122245654444432 2  24566676543

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=86.47  E-value=23  Score=31.53  Aligned_cols=160  Identities=10%  Similarity=0.051  Sum_probs=84.4

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee---cCCCCCC---------CCcceEEEEECCEEEEEeccCCCC
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF---FGPQLSI---------PRRWCAMGSVGGVVYVASGVGAHY  208 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~---~~~~~~~---------~r~~~~~~~~~~~lyv~GG~~~~~  208 (390)
                      ..++.++.+|+--       ...+.+.+||..+++-.   .+|....         +-...-.++-+.-|+|+=...+. 
T Consensus        73 G~vVYngslYY~~-------~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~-  144 (250)
T PF02191_consen   73 GHVVYNGSLYYNK-------YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN-  144 (250)
T ss_pred             CeEEECCcEEEEe-------cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-
Confidence            4555666666654       24578999999998654   4543211         11223444445556666443321 


Q ss_pred             CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCC
Q 016368          209 RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHA  287 (390)
Q Consensus       209 ~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~  287 (390)
                        ...--+-..|+.+-...-.|..-  .+...    ...+.++-|.||++...... ..-..+||+.+++=..+.-.++.
T Consensus       145 --~g~ivvskld~~tL~v~~tw~T~--~~k~~----~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~  216 (250)
T PF02191_consen  145 --NGNIVVSKLDPETLSVEQTWNTS--YPKRS----AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPN  216 (250)
T ss_pred             --CCcEEEEeeCcccCceEEEEEec--cCchh----hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeecc
Confidence              11123344455443211116532  22221    24466678999998422211 22235899998876654443434


Q ss_pred             CCCCceEEE--eeCCeEEEEeCCCCcEEEEECC
Q 016368          288 GWNGPAAST--MNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       288 ~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      .....++..  ..+.+||+..  +|.+..|+..
T Consensus       217 ~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~  247 (250)
T PF02191_consen  217 PYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR  247 (250)
T ss_pred             ccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence            433444443  4568888886  3666777653

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PTZ00421 coronin; Provisional

Probab=86.38  E-value=37  Score=33.70  Aligned_cols=144  Identities=13%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCC
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      +.+++.||.+.        .+.+||..+...   -..+..-...     -.+++. .+|.+.+.|+   ....+.+||+.
T Consensus       138 ~~iLaSgs~Dg--------tVrIWDl~tg~~---~~~l~~h~~~-----V~sla~spdG~lLatgs---~Dg~IrIwD~r  198 (493)
T PTZ00421        138 MNVLASAGADM--------VVNVWDVERGKA---VEVIKCHSDQ-----ITSLEWNLDGSLLCTTS---KDKKLNIIDPR  198 (493)
T ss_pred             CCEEEEEeCCC--------EEEEEECCCCeE---EEEEcCCCCc-----eEEEEEECCCCEEEEec---CCCEEEEEECC
Confidence            35777777654        788999987651   1122211111     122222 3666666631   23456789998


Q ss_pred             CCCeE-ecCCCCCCCCCCceEEEeeC-CeEEEEeC---CCCcEEEEECCCCc--eEEcccccccccceeEEEE--CCEEE
Q 016368          275 LDKWK-EMPEGMHAGWNGPAASTMNE-EELYVVNE---GKGRLSKYDADHDW--WDEVIELAELKGAEKITAA--RGRVC  345 (390)
Q Consensus       275 ~~~W~-~~~~~~~~~~~~~~~~~~~~-g~lyv~gg---~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~--~g~l~  345 (390)
                      +.+-. .+..  ........++...+ +.|+..|.   .++.+..||..+..  .... .+.. .....+..+  ++.++
T Consensus       199 sg~~v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L  274 (493)
T PTZ00421        199 DGTIVSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLL  274 (493)
T ss_pred             CCcEEEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEE
Confidence            76421 2211  11111111222133 44444442   24689999986432  1111 1111 111122222  45555


Q ss_pred             EEee-CCceEEEEEcCCC
Q 016368          346 AVCE-NGERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~-~~~~v~~~d~~~~  362 (390)
                      ++|+ ++..|.+||+.+.
T Consensus       275 ~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        275 YIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEEeCCCeEEEEEeeCC
Confidence            5444 5668889998765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=86.32  E-value=28  Score=34.92  Aligned_cols=133  Identities=11%  Similarity=0.077  Sum_probs=77.6

Q ss_pred             cEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC--CceEEE-eeCCeEEEEe
Q 016368          230 WEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN--GPAAST-MNEEELYVVN  306 (390)
Q Consensus       230 W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~~~~-~~~g~lyv~g  306 (390)
                      =+.+..++.....-....-..-+++++++.   ......+.++.++.+.+++....+.+..  -..+++ ..++.|-+++
T Consensus       418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~  494 (691)
T KOG2048|consen  418 VINVDDVPLALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS  494 (691)
T ss_pred             EEEeccchhhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence            345666665543100111222366777772   2445677899998888887663333221  112222 3455666665


Q ss_pred             CCCCcEEEEECCCCceEEcccccccccceeEE---EECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          307 EGKGRLSKYDADHDWWDEVIELAELKGAEKIT---AARGRVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       307 g~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~---~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                       ..+.+++||.++.+-+.+...+. ....++.   ...+.|.|. ..+++++.||+....-.+|.
T Consensus       495 -t~g~I~v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~~~l~~ws  556 (691)
T KOG2048|consen  495 -TRGQIFVYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEARNLTRWS  556 (691)
T ss_pred             -ccceEEEEEcccceeecchhccC-cceeeeeccccccCcEEEE-ecCCeEEEEecchhhhhhhh
Confidence             67799999999988777663222 2212222   235677777 67789999999554444676

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.29  E-value=33  Score=36.56  Aligned_cols=133  Identities=10%  Similarity=-0.010  Sum_probs=76.5

Q ss_pred             CeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368          214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA  293 (390)
Q Consensus       214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~  293 (390)
                      ..++.|+...+..+  -+.+.....+-.   -++++-+.|.+++-     .+....+||+..++--.....-..+..-..
T Consensus       912 g~~ytyk~~~~g~~--lellh~T~~~~~---v~Ai~~f~~~~Lag-----vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~  981 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDK--LELLHKTEIPGP---VGAICPFQGRVLAG-----VGRFLRLYDLGKKKLLRKCELKFIPNRISS  981 (1205)
T ss_pred             CceEEEEEEecCce--eeeeeccCCCcc---ceEEeccCCEEEEe-----cccEEEEeeCChHHHHhhhhhccCceEEEE
Confidence            34777877555411  333433322211   26677778866553     566778999987754333321111222223


Q ss_pred             EEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEE
Q 016368          294 ASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVV  357 (390)
Q Consensus       294 ~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~  357 (390)
                      ..+ ...+|+|-.-.++ ..++|+++.++...+..-|.+|....+..++..=.+.+..-+++++.
T Consensus       982 iqt-~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen  982 IQT-YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred             Eee-cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEE
Confidence            333 5566666555554 78899999999999998888888777766643333332333344444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=85.91  E-value=35  Score=33.05  Aligned_cols=187  Identities=10%  Similarity=-0.011  Sum_probs=90.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..++++|..+++=+.+...+...  .+... -++ +|++....+      ....++.+|..++.    .+.+..-... .
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~----~~~lt~~~~~-~  286 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSRD------GNSQIYTVNADGSG----LRRLTQSSGI-D  286 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccC------CCceEEEEECCCCC----cEECCCCCCC-C
Confidence            46999999888665554333111  11122 244 455443322      23578888888777    6665432211 1


Q ss_pred             cccceEEEEECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCC--cEEEEEC
Q 016368          242 SREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKG--RLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~--~v~~yd~  317 (390)
                         ......-+|+ +++.+ ...+....+.+|..++..+.+.. .  +..........+|+..++.. ..+  .++++|.
T Consensus       287 ---~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~g~~~~lt~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        287 ---TEPFFSPDGRSIYFTS-DRGGAPQIYRMPASGGAAQRVTF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             ---cCeEEcCCCCEEEEEe-cCCCCcEEEEEECCCCceEEEec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence               1112233555 44442 11123455667777776665543 1  11111222224555444433 222  6899999


Q ss_pred             CCCceEEcccccccccceeEEEECCEEEEEee-C--CceEEEEEcCCCCCcceEecCCCC
Q 016368          318 DHDWWDEVIELAELKGAEKITAARGRVCAVCE-N--GERIMVVDVLASPARAWLVDPPRG  374 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~-~--~~~v~~~d~~~~~~~~W~~~~p~g  374 (390)
                      .+...+.+..-.  ....-...-+|+..++.. .  ...+++.++...  ....+..|.|
T Consensus       360 ~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g  415 (427)
T PRK02889        360 ATGQVTALTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR--IKQRLSVQGG  415 (427)
T ss_pred             CCCCeEEccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCC--ceEEeecCCC
Confidence            988877765321  111112222555444432 2  224667777433  2334444555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.52  E-value=10  Score=35.21  Aligned_cols=193  Identities=20%  Similarity=0.229  Sum_probs=92.3

Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW  176 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W  176 (390)
                      ++..++.+-|...++...--+.|.   +.+.     |..+..+|.+.+-+|.+..+.=...+. ......-+|++...-.
T Consensus       115 TPa~SVtVVDl~~~kvv~ei~~PG---C~~i-----yP~~~~~F~~lC~DGsl~~v~Ld~~Gk-~~~~~t~~F~~~~dp~  185 (342)
T PF06433_consen  115 TPATSVTVVDLAAKKVVGEIDTPG---CWLI-----YPSGNRGFSMLCGDGSLLTVTLDADGK-EAQKSTKVFDPDDDPL  185 (342)
T ss_dssp             SSSEEEEEEETTTTEEEEEEEGTS---EEEE-----EEEETTEEEEEETTSCEEEEEETSTSS-EEEEEEEESSTTTS-B
T ss_pred             CCCCeEEEEECCCCceeeeecCCC---EEEE-----EecCCCceEEEecCCceEEEEECCCCC-EeEeeccccCCCCccc
Confidence            567788999999887755333333   2211     122223346666666666654322221 1222334666655433


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEE--eccCCCCCCCccCeEEEEECCC-----CccccccEEcccCCCCCccccceEEE
Q 016368          177 FFGPQLSIPRRWCAMGSVGGVVYVA--SGVGAHYRGDVARSMKKWDLKS-----DREDWKWEKKAQLKDGRFSREAVEAV  249 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~~~~lyv~--GG~~~~~~~~~~~~~~~yd~~t-----~~~~~~W~~~~~~~~~~~~r~~~~~~  249 (390)
                      ..-+.....-...-...++|+||-+  +|..       ..-...++..+     ..    |+.-.-          ...+
T Consensus       186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-------~~~~~~~~~~t~~e~~~~----WrPGG~----------Q~~A  244 (342)
T PF06433_consen  186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-------AKFGKPWSLLTDAEKADG----WRPGGW----------QLIA  244 (342)
T ss_dssp             -S--EEETTTTEEEEEBTTSEEEEEEETTSS-------EEEEEEEESS-HHHHHTT----EEE-SS----------S-EE
T ss_pred             ccccceECCCCeEEEEecCCEEEEEeccCCc-------ccccCcccccCccccccC----cCCcce----------eeee
Confidence            3222221111233446678888884  3322       11223333322     23    543221          1122


Q ss_pred             E--ECCEEEEEcccCC------CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC--eEEEEeCCCCcEEEEECCC
Q 016368          250 G--FKGNLCMVNLKGN------GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE--ELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       250 ~--~~g~lyv~gg~g~------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g--~lyv~gg~~~~v~~yd~~~  319 (390)
                      .  -.++||++--+|.      .+..+++||+++.+=...-+ ...+  .-++.+.-++  .||.+...++.+.+||..+
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            2  4778998753321      23457899999885322111 1111  1134432444  4555656677999999998


Q ss_pred             Cce
Q 016368          320 DWW  322 (390)
Q Consensus       320 ~~W  322 (390)
                      .+-
T Consensus       322 Gk~  324 (342)
T PF06433_consen  322 GKL  324 (342)
T ss_dssp             --E
T ss_pred             CcE
Confidence            743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=84.86  E-value=39  Score=32.69  Aligned_cols=181  Identities=8%  Similarity=-0.044  Sum_probs=96.8

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCe-EEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNN-LVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ...++++|+.+++-..+...+. ....               ....-++. +++.... .    ...+++++|..+++++
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g-~~~~---------------~~~SPDG~~la~~~~~-~----g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQG-MLVV---------------SDVSKDGSKLLLTMAP-K----GQPDIYLYDTNTKTLT  270 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCC-cEEe---------------eEECCCCCEEEEEEcc-C----CCcEEEEEECCCCcEE
Confidence            3478999998887777765433 1100               12223443 4443322 1    2358999999999988


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368          178 FGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM  257 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv  257 (390)
                      .+...+..-......--+.+||+.....      ....++++|..++.    .+++..-..  .   .. ...-+|+..+
T Consensus       271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~------g~~~Iy~~dl~~g~----~~rlt~~g~--~---~~-~~SPDG~~Ia  334 (419)
T PRK04043        271 QITNYPGIDVNGNFVEDDKRIVFVSDRL------GYPNIFMKKLNSGS----VEQVVFHGK--N---NS-SVSTYKNYIV  334 (419)
T ss_pred             EcccCCCccCccEECCCCCEEEEEECCC------CCceEEEEECCCCC----eEeCccCCC--c---Cc-eECCCCCEEE
Confidence            8765432111111111144677765432      23589999999888    666543211  1   12 2333555333


Q ss_pred             EcccCC------CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-C--cEEEEECCCC
Q 016368          258 VNLKGN------GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-G--RLSKYDADHD  320 (390)
Q Consensus       258 ~gg~g~------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-~--~v~~yd~~~~  320 (390)
                      +.....      +.....++|++++.++.+... . ....+...  .||+..++.... +  .++.++...+
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~-~~~~p~~S--PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G-VNQFPRFS--SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C-CcCCeEEC--CCCCEEEEEEccCCcEEEEEEecCCC
Confidence            322211      224667889999999888762 1 11122322  677655443322 2  5677776654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.68  E-value=31  Score=31.44  Aligned_cols=45  Identities=11%  Similarity=0.174  Sum_probs=26.1

Q ss_pred             CCceecCCCCCCCCc--ceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368          173 SNTWFFGPQLSIPRR--WCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDR  225 (390)
Q Consensus       173 t~~W~~~~~~~~~r~--~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~  225 (390)
                      ..+|+..|-...+-.  .-+++++++.-.+-||.++        .+.+||..++.
T Consensus        28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe--------tI~IYDm~k~~   74 (362)
T KOG0294|consen   28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE--------TIHIYDMRKRK   74 (362)
T ss_pred             ccceeeeccccccccccceeEEEecceeEeccCCCC--------cEEEEeccchh
Confidence            345665555443322  2344455665555555444        78999998876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.65  E-value=11  Score=33.97  Aligned_cols=118  Identities=11%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe---EEEEeCCCCcEEEEECCCCceEEcccccc
Q 016368          254 NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE---LYVVNEGKGRLSKYDADHDWWDEVIELAE  330 (390)
Q Consensus       254 ~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~---lyv~gg~~~~v~~yd~~~~~W~~i~~~p~  330 (390)
                      ++|.-+    ..+....+|+.+++=..+...  .+ ..-.+-. +.+.   +.+-|.++..+..||+...  ..+..+..
T Consensus        86 kVf~g~----~Dk~~k~wDL~S~Q~~~v~~H--d~-pvkt~~w-v~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~L  155 (347)
T KOG0647|consen   86 KVFSGG----CDKQAKLWDLASGQVSQVAAH--DA-PVKTCHW-VPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQL  155 (347)
T ss_pred             eEEeec----cCCceEEEEccCCCeeeeeec--cc-ceeEEEE-ecCCCcceeEecccccceeecccCCC--Ceeeeeec
Confidence            555543    345677999999977776651  11 1112222 3333   4566778888888888743  23333333


Q ss_pred             cccceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEecCCCCeeEEEEEe
Q 016368          331 LKGAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVDPPRGFQVVAVHV  382 (390)
Q Consensus       331 ~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~~p~g~~~~~~~~  382 (390)
                      +-..+++-+.. -+.+++-.+..|.+|++...+.+.-.+..|..++.=+|++
T Consensus       156 PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~  206 (347)
T KOG0647|consen  156 PERVYAADVLY-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC  206 (347)
T ss_pred             cceeeehhccC-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence            33334444444 3555556777999999988765444444555554433333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=83.93  E-value=43  Score=32.41  Aligned_cols=176  Identities=7%  Similarity=-0.043  Sum_probs=95.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      .+++++|..+++=+.+...+.. .......-+| +|.+.-...      ....++++|..++.    ++.+...+.... 
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~----~~~LT~~~~~d~-  280 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT----LTQITNYPGIDV-  280 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc----EEEcccCCCccC-
Confidence            3788888888766665442211 1111122244 555443322      23589999999998    888865443111 


Q ss_pred             ccceEEEEECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEE-EeCCC--------CcE
Q 016368          243 REAVEAVGFKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYV-VNEGK--------GRL  312 (390)
Q Consensus       243 r~~~~~~~~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv-~gg~~--------~~v  312 (390)
                         .....-+| +||+.... .+...+.++|..+++.+.+.. .  +.... ... .+|+..+ .....        ..+
T Consensus       281 ---~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~rlt~-~--g~~~~-~~S-PDG~~Ia~~~~~~~~~~~~~~~~I  351 (419)
T PRK04043        281 ---NGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQVVF-H--GKNNS-SVS-TYKNYIVYSSRETNNEFGKNTFNL  351 (419)
T ss_pred             ---ccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEeCcc-C--CCcCc-eEC-CCCCEEEEEEcCCCcccCCCCcEE
Confidence               11222344 56666422 133567889999888876654 1  21222 222 4555444 33322        378


Q ss_pred             EEEECCCCceEEcccccccccceeEEEECCE-EEEEeeC--CceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIELAELKGAEKITAARGR-VCAVCEN--GERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~-l~i~g~~--~~~v~~~d~~~~  362 (390)
                      +.+|.++..++.+....  ....-...-+|+ |++....  ...++++++...
T Consensus       352 ~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        352 YLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            99999999998887532  111112223554 4444322  235778887664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=83.85  E-value=10  Score=37.36  Aligned_cols=104  Identities=16%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEc-----
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGW-NGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEV-----  325 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i-----  325 (390)
                      +-.||+.|    .+..++.++++.++|-..=. ...+. ....+.  --..|+.+|+.++.|..||+.+.+=...     
T Consensus       145 scDly~~g----sg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in--~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  145 SCDLYLVG----SGSEVYRLNLEQGRFLNPFE-TDSGELNVVSIN--EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             CccEEEee----cCcceEEEEccccccccccc-cccccceeeeec--CccceEEecccCceEEEecchhhhhheeeeccc
Confidence            44588886    56778899999998854222 11111 111222  2345777888899999999987543221     


Q ss_pred             --cccccccc--ceeEEEE-C-CEEEEEeeCCceEEEEEcCCC
Q 016368          326 --IELAELKG--AEKITAA-R-GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       326 --~~~p~~r~--~~~~~~~-~-g~l~i~g~~~~~v~~~d~~~~  362 (390)
                        ...|..-.  ..+...+ + |.-+-+|...+.+++||+.+.
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence              11221111  1222333 4 344446666779999998775

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=83.37  E-value=12  Score=33.87  Aligned_cols=107  Identities=11%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEECCCCceEEccccc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p  329 (390)
                      .|.+.++|   ..-.....||.++-+--.-.. +.....+....+  ...++||+.+..+|.|..||-.++....--.-.
T Consensus       227 sGefllvg---TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  227 SGEFLLVG---TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             CCceEEEe---cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence            55666663   123345689988765443333 333334333333  457999999999999999998877653321111


Q ss_pred             ccccc-eeEEEECCEEEEEeeC-CceEEEEEcCCC
Q 016368          330 ELKGA-EKITAARGRVCAVCEN-GERIMVVDVLAS  362 (390)
Q Consensus       330 ~~r~~-~~~~~~~g~l~i~g~~-~~~v~~~d~~~~  362 (390)
                      ..... +++..-.+.-||+.++ +.-+.+|++.++
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            11111 2222234555666544 445678888775

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=82.78  E-value=58  Score=34.26  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=24.7

Q ss_pred             eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368          189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL  236 (390)
Q Consensus       189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~  236 (390)
                      .+-+++++.||+...         .+.+..+|..|++.  .|+.-...
T Consensus       188 ~TPlvvgg~lYv~t~---------~~~V~ALDa~TGk~--lW~~d~~~  224 (764)
T TIGR03074       188 ATPLKVGDTLYLCTP---------HNKVIALDAATGKE--KWKFDPKL  224 (764)
T ss_pred             cCCEEECCEEEEECC---------CCeEEEEECCCCcE--EEEEcCCC
Confidence            345677999999743         34678888887763  37755443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.52  E-value=34  Score=30.16  Aligned_cols=69  Identities=16%  Similarity=0.261  Sum_probs=41.5

Q ss_pred             eEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC-ceE
Q 016368          246 VEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD-WWD  323 (390)
Q Consensus       246 ~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~-~W~  323 (390)
                      .+.+.-+|++++.           .-+-+.+.|+.-.. .++......+-  .+-|.+..++|.++.+..|-+..+ +|.
T Consensus       226 iAS~SqDg~viIw-----------t~~~e~e~wk~tll~~f~~~~w~vSW--S~sGn~LaVs~GdNkvtlwke~~~Gkw~  292 (299)
T KOG1332|consen  226 IASCSQDGTVIIW-----------TKDEEYEPWKKTLLEEFPDVVWRVSW--SLSGNILAVSGGDNKVTLWKENVDGKWE  292 (299)
T ss_pred             eEEecCCCcEEEE-----------EecCccCcccccccccCCcceEEEEE--eccccEEEEecCCcEEEEEEeCCCCcEE
Confidence            3444456666665           33445678876432 13333333333  367888888887887777776654 899


Q ss_pred             Eccc
Q 016368          324 EVIE  327 (390)
Q Consensus       324 ~i~~  327 (390)
                      ++..
T Consensus       293 ~v~~  296 (299)
T KOG1332|consen  293 EVGE  296 (299)
T ss_pred             Eccc
Confidence            9874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=82.25  E-value=43  Score=31.76  Aligned_cols=176  Identities=19%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             CCCcEEEeCCCCce-ecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          163 LASPLAFNPQSNTW-FFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       163 ~~~~~~~dp~t~~W-~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      .+.+.+.|..+++- .+++..   ..-|.....   +.++|+.+. +        ..+-++|+.+.+      .+...+.
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d--------g~vsviD~~~~~------~v~~i~~   76 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D--------GTVSVIDLATGK------VVATIKV   76 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T--------SEEEEEETTSSS------EEEEEE-
T ss_pred             CCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C--------CeEEEEECCccc------EEEEEec
Confidence            36788889888753 333322   122444433   346898752 2        268899999877      3444333


Q ss_pred             CCccccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCe-EecCCC-CC----CCCCCceEEEeeCCeEEEEeCC-CC
Q 016368          239 GRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEG-MH----AGWNGPAASTMNEEELYVVNEG-KG  310 (390)
Q Consensus       239 ~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~-~~----~~~~~~~~~~~~~g~lyv~gg~-~~  310 (390)
                      ...   ..+++ .-+|+..+++  +.......++|.++.+= +.++.. .+    .+|. .+++.......|++.-. .+
T Consensus        77 G~~---~~~i~~s~DG~~~~v~--n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv-~aIv~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   77 GGN---PRGIAVSPDGKYVYVA--NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV-AAIVASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             SSE---EEEEEE--TTTEEEEE--EEETTEEEEEETTT--EEEEEE--EE-TTTS---E-EEEEE-SSSSEEEEEETTTT
T ss_pred             CCC---cceEEEcCCCCEEEEE--ecCCCceeEeccccccceeecccccccccccCCCc-eeEEecCCCCEEEEEEccCC
Confidence            332   13333 3577755554  22345677899877532 223221 11    1222 12222256676777654 46


Q ss_pred             cEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-CceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-GERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~~~v~~~d~~~~  362 (390)
                      .+|..|.....=..+..+...+..|....- +++-++++.. .+.+.++|..+.
T Consensus       151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence            899999775432222333333443433333 4555555422 346667776554

...

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=82.25  E-value=47  Score=31.64  Aligned_cols=148  Identities=14%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      +.++|+..+.        .+.+.++|..++..   ...+..-..+.    ..+....++++|+..... +...+.++|..
T Consensus        85 ~~~vyv~~~~--------~~~v~vid~~~~~~---~~~~~vG~~P~----~~~~~~~~~~vYV~n~~~-~~~~vsvid~~  148 (381)
T COG3391          85 GNKVYVTTGD--------SNTVSVIDTATNTV---LGSIPVGLGPV----GLAVDPDGKYVYVANAGN-GNNTVSVIDAA  148 (381)
T ss_pred             CCeEEEecCC--------CCeEEEEcCcccce---eeEeeeccCCc----eEEECCCCCEEEEEeccc-CCceEEEEeCC
Confidence            6779998655        34888999777761   33332222111    133333466899983111 34667889998


Q ss_pred             CCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEccc----ccccccceeEEE--ECCEEEEE
Q 016368          275 LDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIE----LAELKGAEKITA--ARGRVCAV  347 (390)
Q Consensus       275 ~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~----~p~~r~~~~~~~--~~g~l~i~  347 (390)
                      +++=.....   .+.....+++ ..+.++|+....++.+..+|.++..=.+ ..    .+.........+  -+.++|+.
T Consensus       149 t~~~~~~~~---vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         149 TNKVTATIP---VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             CCeEEEEEe---cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEE
Confidence            876444322   1111133333 2455699998777899999988765333 22    333333344444  35668887


Q ss_pred             eeCC--ceEEEEEcCCC
Q 016368          348 CENG--ERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~--~~v~~~d~~~~  362 (390)
                      -...  +.+..+|..+.
T Consensus       225 ~~~~~~~~v~~id~~~~  241 (381)
T COG3391         225 NDGSGSNNVLKIDTATG  241 (381)
T ss_pred             eccCCCceEEEEeCCCc
Confidence            5443  47888887775

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=82.02  E-value=56  Score=32.38  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=54.2

Q ss_pred             EEEeCCCCCeEecCCC-CCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc--eEEcccccccccceeEEEE-CCEE
Q 016368          269 AIYNVELDKWKEMPEG-MHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEKITAA-RGRV  344 (390)
Q Consensus       269 ~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~-~g~l  344 (390)
                      -+|+...++-+.+... .|.+-...+++...+...+++|-.++.+..||..+..  +.+..-+|     .-++.+ +|.+
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P-----~~iaWHp~gai  313 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIP-----TLIAWHPDGAI  313 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccc-----eEEEEcCCCcE
Confidence            3677776665544321 1121111122213578888999999999999987653  33322221     123333 7889


Q ss_pred             EEEeeCCceEEEEEcCCC
Q 016368          345 CAVCENGERIMVVDVLAS  362 (390)
Q Consensus       345 ~i~g~~~~~v~~~d~~~~  362 (390)
                      +++|+..+.++.||+.-+
T Consensus       314 ~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCceEEEEEeecC
Confidence            999888789999998664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=81.84  E-value=44  Score=30.99  Aligned_cols=246  Identities=15%  Similarity=0.096  Sum_probs=120.3

Q ss_pred             cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEE
Q 016368           73 FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI  152 (390)
Q Consensus        73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (390)
                      +..||....++            .......+.+|+..++...+...+. +-..             ++......++-+++
T Consensus        51 ~~~LY~v~~~~------------~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~-------------p~yvsvd~~g~~vf  104 (346)
T COG2706          51 QRHLYVVNEPG------------EEGGVAAYRIDPDDGRLTFLNRQTL-PGSP-------------PCYVSVDEDGRFVF  104 (346)
T ss_pred             CCEEEEEEecC------------CcCcEEEEEEcCCCCeEEEeecccc-CCCC-------------CeEEEECCCCCEEE
Confidence            44688877664            1444567778887777776653332 1110             01444444554444


Q ss_pred             EeecCCCCCCCCCcEEEeCCCC-c-------eecCCCCCCCC-----cceEEEEECCEEEEEeccCCCCCCCccCeEEEE
Q 016368          153 AATTPHFLPALASPLAFNPQSN-T-------WFFGPQLSIPR-----RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       153 gG~~~~~~~~~~~~~~~dp~t~-~-------W~~~~~~~~~r-----~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      ...     ...+.+.+|-..++ .       -.....-|.+|     .+++-..-+++..+.-       +--.+.+.+|
T Consensus       105 ~An-----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-------DLG~Dri~~y  172 (346)
T COG2706         105 VAN-----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-------DLGTDRIFLY  172 (346)
T ss_pred             EEE-----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-------ecCCceEEEE
Confidence            433     23356667666442 1       12223334455     2222222244333332       2234578889


Q ss_pred             ECCCCccccccEEcccCCCC-CccccceEEEEE-CCE-EEEEcccCCCCcee--EEEeCCCCCeEecCCC--CCCCCC--
Q 016368          220 DLKSDREDWKWEKKAQLKDG-RFSREAVEAVGF-KGN-LCMVNLKGNGAKDG--AIYNVELDKWKEMPEG--MHAGWN--  290 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~-~~~r~~~~~~~~-~g~-lyv~gg~g~~~~~~--~~yd~~~~~W~~~~~~--~~~~~~--  290 (390)
                      +...+.    -+........ -.. ..| +++. +++ .|++.   +-..++  +.||....+.++++..  +|....  
T Consensus       173 ~~~dg~----L~~~~~~~v~~G~G-PRH-i~FHpn~k~aY~v~---EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         173 DLDDGK----LTPADPAEVKPGAG-PRH-IVFHPNGKYAYLVN---ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             EcccCc----cccccccccCCCCC-cce-EEEcCCCcEEEEEe---ccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence            888665    4433221111 010 012 2332 444 67762   222233  3577777788776532  333322  


Q ss_pred             -CceE-EE-eeCCeEEEEeCCCCcEEEE--ECCCCceEEccccc---ccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          291 -GPAA-ST-MNEEELYVVNEGKGRLSKY--DADHDWWDEVIELA---ELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       291 -~~~~-~~-~~~g~lyv~gg~~~~v~~y--d~~~~~W~~i~~~p---~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       +.++ .. ..+..||+.....+.|..|  |+.+..-..+...+   .....+.+...++.|++.+...+.+.+|.+...
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             2222 22 2345666666555555555  55655544443222   212335566667777777666667888877666


Q ss_pred             CCc
Q 016368          363 PAR  365 (390)
Q Consensus       363 ~~~  365 (390)
                      +++
T Consensus       324 TG~  326 (346)
T COG2706         324 TGR  326 (346)
T ss_pred             Cce
Confidence            543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.72  E-value=48  Score=31.34  Aligned_cols=229  Identities=14%  Similarity=0.143  Sum_probs=113.9

Q ss_pred             eEEEEeCCCCC--ceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ce
Q 016368          101 EFFCFDPISST--WNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSN--TW  176 (390)
Q Consensus       101 ~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W  176 (390)
                      .++++|+.+.+  |........ ....               .-+...++.++++...       ..++++|..++  .|
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~~~-~~~~---------------~~~~~~~G~i~~g~~~-------g~~y~ld~~~G~~~W  135 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLGAV-AQLS---------------GPILGSDGKIYVGSWD-------GKLYALDASTGTLVW  135 (370)
T ss_pred             cEEEEeCCCCcEEecccCcCcc-eecc---------------CceEEeCCeEEEeccc-------ceEEEEECCCCcEEE
Confidence            58899999876  765332200 0000               1112225556666442       27889999655  67


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC--CCCCccccceEEEEECCE
Q 016368          177 FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL--KDGRFSREAVEAVGFKGN  254 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~--~~~~~~r~~~~~~~~~g~  254 (390)
                      +.--... ++..-..++.++.+|+..         ....+.+.|..+.+.  +|+.-...  .....    ...+..++.
T Consensus       136 ~~~~~~~-~~~~~~~v~~~~~v~~~s---------~~g~~~al~~~tG~~--~W~~~~~~~~~~~~~----~~~~~~~~~  199 (370)
T COG1520         136 SRNVGGS-PYYASPPVVGDGTVYVGT---------DDGHLYALNADTGTL--KWTYETPAPLSLSIY----GSPAIASGT  199 (370)
T ss_pred             EEecCCC-eEEecCcEEcCcEEEEec---------CCCeEEEEEccCCcE--EEEEecCCccccccc----cCceeecce
Confidence            6533322 333333444567777653         224677888887663  37743322  22111    223367888


Q ss_pred             EEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCC--------CCCceEEEeeCCeEEEEeCCCCcEEEEECCCC--ce
Q 016368          255 LCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG--------WNGPAASTMNEEELYVVNEGKGRLSKYDADHD--WW  322 (390)
Q Consensus       255 lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~--~W  322 (390)
                      +|+-.. + .......+|++++  .|+.... .+..        ......+. .++.+|. +...+.+..+|..+.  .|
T Consensus       200 vy~~~~-~-~~~~~~a~~~~~G~~~w~~~~~-~~~~~~~~~~~~~~~~~~v~-v~~~~~~-~~~~g~~~~l~~~~G~~~W  274 (370)
T COG1520         200 VYVGSD-G-YDGILYALNAEDGTLKWSQKVS-QTIGRTAISTTPAVDGGPVY-VDGGVYA-GSYGGKLLCLDADTGELIW  274 (370)
T ss_pred             EEEecC-C-CcceEEEEEccCCcEeeeeeee-cccCcccccccccccCceEE-ECCcEEE-EecCCeEEEEEcCCCceEE
Confidence            887631 1 1224667888765  6875222 1111        11112222 3444432 223456777776653  37


Q ss_pred             EEccccccc---ccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCc-ceEecCCC
Q 016368          323 DEVIELAEL---KGAEKITAARGRVCAVCENG-----ERIMVVDVLASPAR-AWLVDPPR  373 (390)
Q Consensus       323 ~~i~~~p~~---r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~-~W~~~~p~  373 (390)
                      +.-..+...   .........+|++|+.....     ..+++++....... .|......
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g  334 (370)
T COG1520         275 SFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGG  334 (370)
T ss_pred             EEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCC
Confidence            655432111   11122222478888875322     35677776333332 67755443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.46  E-value=52  Score=31.60  Aligned_cols=124  Identities=10%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             EECCCCccccccEEcccCCCCCccccceEE-EEECCEEEEEcccCCCCceeEEEeCCCC-----CeEecCCCCCCCCCCc
Q 016368          219 WDLKSDREDWKWEKKAQLKDGRFSREAVEA-VGFKGNLCMVNLKGNGAKDGAIYNVELD-----KWKEMPEGMHAGWNGP  292 (390)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~-~~~~g~lyv~gg~g~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~  292 (390)
                      .|.....    |+.+........    .++ ...++.++++|..    .....-+-...     +|.+++. ...+..-.
T Consensus       265 ~d~G~~~----W~~~~~~~~~~l----~~v~~~~dg~l~l~g~~----G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~  331 (398)
T PLN00033        265 WEPGQPY----WQPHNRASARRI----QNMGWRADGGLWLLTRG----GGLYVSKGTGLTEEDFDFEEADI-KSRGFGIL  331 (398)
T ss_pred             cCCCCcc----eEEecCCCccce----eeeeEcCCCCEEEEeCC----ceEEEecCCCCcccccceeeccc-CCCCcceE
Confidence            3444445    887765443322    223 2357888888511    11222222223     4555543 11111122


Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc-ccccceeEEEE-CCEEEEEeeCCceEEEE
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA-ELKGAEKITAA-RGRVCAVCENGERIMVV  357 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~  357 (390)
                      .+...-++.++++|. .|.+++-......|++..... ..-.-+.+... +++.|+.|.++ .|+.|
T Consensus       332 ~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G-~il~~  396 (398)
T PLN00033        332 DVGYRSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG-VLLRY  396 (398)
T ss_pred             EEEEcCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCc-EEEEe
Confidence            233324677777765 566777777778999976322 11222344433 58899985444 44443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=81.43  E-value=40  Score=30.33  Aligned_cols=176  Identities=13%  Similarity=0.121  Sum_probs=98.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc---CCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ---LKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~---~~~~  239 (390)
                      ..+=..||.|++-...+- +..-.-|.+++- ++..++.        + .-..+..+|+++..    -++.+-   +...
T Consensus        83 gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Wit--------d-~~~aI~R~dpkt~e----vt~f~lp~~~a~~  148 (353)
T COG4257          83 GAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWIT--------D-TGLAIGRLDPKTLE----VTRFPLPLEHADA  148 (353)
T ss_pred             ccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEe--------c-CcceeEEecCcccc----eEEeecccccCCC
Confidence            445567999998776542 222222333222 4444443        1 12277888998876    444332   2221


Q ss_pred             CccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          240 RFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       240 ~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                           ..-.+++  .|.++..|-.|.    --.+|+.++.-+..+.+  .+..-.++|+.-+|.+|+-.-..+-+-+.|+
T Consensus       149 -----nlet~vfD~~G~lWFt~q~G~----yGrLdPa~~~i~vfpaP--qG~gpyGi~atpdGsvwyaslagnaiaridp  217 (353)
T COG4257         149 -----NLETAVFDPWGNLWFTGQIGA----YGRLDPARNVISVFPAP--QGGGPYGICATPDGSVWYASLAGNAIARIDP  217 (353)
T ss_pred             -----cccceeeCCCccEEEeecccc----ceecCcccCceeeeccC--CCCCCcceEECCCCcEEEEeccccceEEccc
Confidence                 1222333  556777642121    11778887776665552  3333334554489999998777778888898


Q ss_pred             CCCceEEccccccc-c-cceeEE-EECCEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          318 DHDWWDEVIELAEL-K-GAEKIT-AARGRVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       318 ~~~~W~~i~~~p~~-r-~~~~~~-~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      .+..=.++. .|.. . ..-.+- ---|++.+-.-++..++.||++..   +|.
T Consensus       218 ~~~~aev~p-~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~---sW~  267 (353)
T COG4257         218 FAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT---SWI  267 (353)
T ss_pred             ccCCcceec-CCCcccccccccccCccCcEEEeccCCceeeEeCcccc---cce
Confidence            877444443 2222 1 111222 225677777555678888888876   565

>smart00284 OLF Olfactomedin-like domains

Probab=81.19  E-value=40  Score=30.09  Aligned_cols=160  Identities=15%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCC------------CcceEEEEECCEEEEEeccCCCC
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIP------------RRWCAMGSVGGVVYVASGVGAHY  208 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~------------r~~~~~~~~~~~lyv~GG~~~~~  208 (390)
                      ..++.++.+|+--.       ....+..||..+++-.....+|.+            -...-.++-.+-|.|+=....  
T Consensus        78 G~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~--  148 (255)
T smart00284       78 GVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ--  148 (255)
T ss_pred             cEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC--
Confidence            56667777777532       346899999999976433333321            112334444444554421111  


Q ss_pred             CCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCC
Q 016368          209 RGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHA  287 (390)
Q Consensus       209 ~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~  287 (390)
                       ....--+-..|+.|-...--|..--  +...    ...+.++-|.||++-..... ..-..+||+.+++=..+.-.++.
T Consensus       149 -~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s----a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n  221 (255)
T smart00284      149 -NAGKIVISKLNPATLTIENTWITTY--NKRS----ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFEN  221 (255)
T ss_pred             -CCCCEEEEeeCcccceEEEEEEcCC--Cccc----ccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeecc
Confidence             0011122345554432111165422  2111    24456678999998311111 12245899998764433332333


Q ss_pred             CCCCceEEE--eeCCeEEEEeCCCCcEEEEECC
Q 016368          288 GWNGPAAST--MNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       288 ~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      .....++.-  ..+.+||+..  ++.+..||..
T Consensus       222 ~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v~  252 (255)
T smart00284      222 MYEYISMLDYNPNDRKLYAWN--NGHLVHYDIA  252 (255)
T ss_pred             ccccceeceeCCCCCeEEEEe--CCeEEEEEEE
Confidence            333333332  4568888875  4677777754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=80.94  E-value=77  Score=33.25  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcccccccc--cceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELK--GAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r--~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +|++.+.+ .++.|.+|+..  .|.....+....  ..+..+.+  +|+-...+.-++.|.+||+.+
T Consensus       200 ~g~la~~~-~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  200 GGTLAVPP-VDNTVKVYSRK--GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCeEEeec-cCCeEEEEccC--CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            35555444 57788899765  588877665332  22444444  444444445577999999883

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=80.64  E-value=58  Score=31.60  Aligned_cols=183  Identities=13%  Similarity=0.123  Sum_probs=90.9

Q ss_pred             CCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ...++++++...++-+++.-...+-..-+.-.-+|.|.|..-...    ....-.+.|-...+.     ....+++-.+.
T Consensus       105 ~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg-----~~~e~LnlGpa  175 (668)
T COG4946         105 QTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDG-----IKTEPLNLGPA  175 (668)
T ss_pred             ccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCC-----ceeeeccCCce
Confidence            456899999998888877655322222233333677777654432    122233455554443     22333443332


Q ss_pred             cccceEEEEECCEEEEEccc--------CC-CCceeEEEe--CCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 016368          242 SREAVEAVGFKGNLCMVNLK--------GN-GAKDGAIYN--VELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG  310 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~--------g~-~~~~~~~yd--~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~  310 (390)
                          ...+.-+| +.++|-.        ++ |+..+..+-  -...+++++-. ++..-. ..+.  +++++|.+...+|
T Consensus       176 ----thiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vd-l~~~vS-~PmI--V~~RvYFlsD~eG  246 (668)
T COG4946         176 ----THIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVD-LDGNVS-SPMI--VGERVYFLSDHEG  246 (668)
T ss_pred             ----eeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeee-cCCCcC-CceE--EcceEEEEecccC
Confidence                44555566 4445311        11 222232221  12225555554 433222 2333  6899999988776


Q ss_pred             --cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCCCCc
Q 016368          311 --RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLASPAR  365 (390)
Q Consensus       311 --~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~  365 (390)
                        .++.-|...+--++-.....  ....-+..+|+-.|+ ..+.+|++||+.+...+
T Consensus       247 ~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvF-q~~GdIylydP~td~le  300 (668)
T COG4946         247 VGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVF-QNAGDIYLYDPETDSLE  300 (668)
T ss_pred             ccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEE-ecCCcEEEeCCCcCcce
Confidence              77777777554333322110  000112235555555 45557777777665433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=80.58  E-value=60  Score=31.80  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=66.3

Q ss_pred             EEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368          248 AVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVI  326 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~  326 (390)
                      ++..++...++||+  +++ +.+|.+..+.-.+... ....+.....+. ..++..+..+...+++..||.+++.= ...
T Consensus       450 Av~~~~~~vaVGG~--Dgk-vhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~  524 (603)
T KOG0318|consen  450 AVSPDGSEVAVGGQ--DGK-VHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTN  524 (603)
T ss_pred             EEcCCCCEEEEecc--cce-EEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecc
Confidence            44456777778743  223 7789888765444333 222222222222 46888888888888999999887543 222


Q ss_pred             cccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC
Q 016368          327 ELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       327 ~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .+..+.....+.++  +++++.-|+-+..|++|++.++.
T Consensus       525 ~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  525 RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            22222222223333  66777776778899999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-13
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-10
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-10
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-11
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-10
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	9e-11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	7e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-06

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 41/278 (14%), Positives = 78/278 (28%), Gaps = 68/278 (24%)

Query: 103 FCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA-----ATTP 157
             +DP+ +         Q P      R+ S         S+  + N V +          
Sbjct: 27  VAYDPMENECYLTALAEQIP------RNHS---------SIVTQQNQVYVVGGLYVDEEN 71

Query: 158 HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK 217
              P  +     +  S+ W   P L   R    +G V   +YV +G        +  S+ 
Sbjct: 72  KDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASL-DSVL 130

Query: 218 KWDLKSDREDWKWEKKAQLKDGRFSREAVE------AVGFKGNLCMVNLKGNGAKDGA-- 269
            +D  +     KW +   L    +    +        +G             G  D    
Sbjct: 131 CYDPVAA----KWSEVKNLPIKVYGHNVISHNGMIYCLG-------------GKTDDKKC 173

Query: 270 -----IYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV--NEGKGRLS---KYDADH 319
                IYN +   WK++   M    +    +     ++ +       G  +    +D   
Sbjct: 174 TNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHK-GKIVIAGGVTEDGLSASVEAFDLKT 231

Query: 320 DWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357
           + W+ + E             R  +  V   G  +  +
Sbjct: 232 NKWEVMTEF---------PQERSSISLVSLAG-SLYAI 259

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 50/231 (21%)

Query: 88  HNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRN 147
           + +           FF  D +SS W  LP  P               +R L    LG  +
Sbjct: 66  YVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--------------ARCLF--GLGEVD 109

Query: 148 NLVL-IAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGA 206
           + +  +A        +L S L ++P +  W     L I      + S  G++Y    +G 
Sbjct: 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC---LGG 166

Query: 207 HYRGDVA-RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN-- 263
                     +  ++ K       W+  A +K  R                +   KG   
Sbjct: 167 KTDDKKCTNRVFIYNPKKG----DWKDLAPMKTPR------------SMFGVAIHKGKIV 210

Query: 264 --GAKDGA-------IYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV 305
             G             ++++ +KW+ M E      +  +  ++    LY +
Sbjct: 211 IAGGVTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVSLA-GSLYAI 259

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 40/202 (19%)

Query: 98  SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG--VRNNLVLIAAT 155
            S+   C+DP+++ W+ +   P                    V        N ++     
Sbjct: 127 DSVL--CYDPVAAKWSEVKNLPI------------------KVYGHNVISHNGMIYCLGG 166

Query: 156 TPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARS 215
                        +NP+   W     +  PR    +    G + +    G      ++ S
Sbjct: 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVI---AGGVTEDGLSAS 223

Query: 216 MKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV--------GFKGNLCMVNLKGNGAKD 267
           ++ +DLK++    KWE   +    R S  ++ ++        GF               +
Sbjct: 224 VEAFDLKTN----KWEVMTEFPQER-SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278

Query: 268 GA-IYNVELDKWKE-MPEGMHA 287
               Y  +  +W   + E  +A
Sbjct: 279 DIWKYEDDKKEWAGMLKEIRYA 300

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 44/272 (16%), Positives = 76/272 (27%), Gaps = 55/272 (20%)

Query: 103 FCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA-----ATTP 157
             +DP ++         Q P      ++           SL  + N V +A         
Sbjct: 16  VAYDPAANECYCASLSSQVP------KNHV---------SLVTKENQVFVAGGLFYNEDN 60

Query: 158 HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMK 217
              P  A  L F+   + W   P L  PR    +G     +YV  G           S+ 
Sbjct: 61  KEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVM 120

Query: 218 KWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA-------I 270
            +D  S     KW +   L    +       +     + ++   G G            +
Sbjct: 121 CYDRLSF----KWGESDPLPYVVYG---HTVLSHMDLVYVI---G-GKGSDRKCLNKMCV 169

Query: 271 YNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV--NEGKGRLS---KYDADHDWWDEV 325
           Y+ +  +WKE+   M    +   A+  +   + V       G  S    Y    + W   
Sbjct: 170 YDPKKFEWKELAP-MQTARSLFGATVHD-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227

Query: 326 IELAELKGAEKITAARGRVCAVCENGERIMVV 357
                          R  +  V   G  +  +
Sbjct: 228 EAF---------PQERSSLSLVSLVG-TLYAI 249

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 32/236 (13%), Positives = 63/236 (26%), Gaps = 41/236 (17%)

Query: 88  HNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRN 147
               +      S+   C+D +S  W      P       +Y H           ++    
Sbjct: 107 REIKDGERCLDSVM--CYDRLSFKWGESDPLPYV-----VYGH-----------TVLSHM 148

Query: 148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAH 207
           +LV +          L     ++P+   W     +   R         G + V       
Sbjct: 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV---AAGV 205

Query: 208 YRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV--------GFKGNLCMVN 259
               +  S + + +  +    KW         R S  ++ ++        GF        
Sbjct: 206 TDTGLTSSAEVYSITDN----KWAPFEAFPQER-SSLSLVSLVGTLYAIGGFATLETESG 260

Query: 260 LKGNGAKDGA-IYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV--NEGKGRL 312
                  +    YN E  KW+ +   +        A+ +    L V+   +    L
Sbjct: 261 ELVPTELNDIWRYNEEEKKWEGVLREIAY---AAGATFLP-VRLNVLRLTKMAENL 312

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 50/216 (23%)

Query: 165 SPLAFNPQSNTWFFGPQ-LSIPRRWCAMGSVGGVVYVASGVGAHYRGD---VARSMKKWD 220
             +A++P +N  +       +P+   ++ +    V+VA G+  +       ++    ++D
Sbjct: 14  GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD 73

Query: 221 LKSDREDWKWEKKAQLKDGRFSREAVE------AVGFKGNLCMVNLKGNGAKDGA----- 269
                    W     L   R      E       VG           G   KDG      
Sbjct: 74  HLDSE----WLGMPPLPSPRCLFGLGEALNSIYVVG-----------GREIKDGERCLDS 118

Query: 270 --IYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV---NEGKGRLSK---YDADHDW 321
              Y+    KW E    +     G    +   + +YV+      +  L+K   YD     
Sbjct: 119 VMCYDRLSFKWGESDP-LPYVVYGHTVLSHM-DLVYVIGGKGSDRKCLNKMCVYDPKKFE 176

Query: 322 WDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357
           W E+  +           AR    A   +G RI+V 
Sbjct: 177 WKELAPMQT---------ARSLFGATVHDG-RIIVA 202

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 58/279 (20%)

Query: 94  YSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA 153
           Y   S      ++P + TW  L                          +  V   L+   
Sbjct: 33  YFRQSLSYLEAYNPSNGTWLRLADLQVP-----RSGL-----------AGCVVGGLLYAV 76

Query: 154 ---ATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRG 210
                +P      ++   +NP +N W     +S+PR    +G + G +Y    VG  +  
Sbjct: 77  GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYA---VGGSHGC 133

Query: 211 DVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVE------AVG-FKGNLCMVNLKGN 263
               S+++++ + D    +W   A +   R             AVG F G   +      
Sbjct: 134 IHHNSVERYEPERD----EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL------ 183

Query: 264 GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV--NEGKGRLS---KYDAD 318
                  Y  E ++W+ +   M+   +G     ++   +Y     +G+ +L+   +YD +
Sbjct: 184 --NSAECYYPERNEWRMITA-MNTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVE 239

Query: 319 HDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVV 357
            + W  V  +            R  +      G RI V+
Sbjct: 240 TETWTFVAPM---------KHRRSALGITVHQG-RIYVL 268

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 46/206 (22%)

Query: 98  SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA--AT 155
           +S+E   ++P    W+ +      P L                  + V N L+       
Sbjct: 137 NSVE--RYEPERDEWHLVA-----PMLTRRIGV-----------GVAVLNRLLYAVGGFD 178

Query: 156 TPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARS 215
             + L    S   + P+ N W     ++  R    +  +   +Y     G +   D   S
Sbjct: 179 GTNRL---NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA---AGGYDGQDQLNS 232

Query: 216 MKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA------ 269
           ++++D++++     W   A +K  R S   +      G + ++     G  DG       
Sbjct: 233 VERYDVETE----TWTFVAPMKHRR-SALGITVHQ--GRIYVL-----GGYDGHTFLDSV 280

Query: 270 -IYNVELDKWKEMPEGMHAGWNGPAA 294
             Y+ + D W E+   M +G +G   
Sbjct: 281 ECYDPDTDTWSEVTR-MTSGRSGVGV 305

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 35/196 (17%)

Query: 173 SNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK 232
           S+         +PR   A   VG ++Y A G    Y       ++ ++  +      W +
Sbjct: 3   SHHHHHHSSGLVPRGSHAPK-VGRLIYTAGG----YFRQSLSYLEAYNPSNGT----WLR 53

Query: 233 KAQLKDGRFSREAVEAVGFKGNLCMV---NLKGNGAKDGA---IYNVELDKWKEMPEGMH 286
            A L+  R S  A   VG  G L  V   N   +G  D +    YN   ++W      M 
Sbjct: 54  LADLQVPR-SGLAGCVVG--GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MS 109

Query: 287 AGWNGPAASTMNEEELYVV--NEGKGRLS---KYDADHDWWDEVIELAELKGAEKITAAR 341
              N      ++   +Y V  + G    +   +Y+ + D W  V  +            R
Sbjct: 110 VPRNRIGVGVID-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT---------RR 159

Query: 342 GRVCAVCENGERIMVV 357
             V     N   +  V
Sbjct: 160 IGVGVAVLNR-LLYAV 174

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 35/208 (16%)

Query: 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221
              S   FNP+  +W         RR  A      VVY+  G     +    + M  +++
Sbjct: 22  QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG----SQLFPIKRMDCYNV 77

Query: 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMV---NLKGNGAKDGAIYNVELDKW 278
             D     W  K         R+++ A   +G +       +  +       Y+   + W
Sbjct: 78  VKDS----WYSKLGPPT---PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130

Query: 279 KEMPEGMHAGWNGPAASTMNEEELYVV------NEGKGRLSK---YDADHDWWDEVIELA 329
              P  M            N   +YV       N     L+    YD   + W E+  + 
Sbjct: 131 HTKPS-MLTQRCSHGMVEAN-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI 188

Query: 330 ELKGAEKITAARGRVCAVCENGERIMVV 357
           E         AR     V     +I  V
Sbjct: 189 E---------ARKNHGLVFVKD-KIFAV 206

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 43/211 (20%)

Query: 98  SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA---A 154
              E  C+D  + +W+  P+            H            +   N L+ +     
Sbjct: 118 YLFE--CYDTRTESWHTKPSMLTQ-----RCSH-----------GMVEANGLIYVCGGSL 159

Query: 155 TTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVAR 214
                   L S   ++P + TW     +   R+   +  V   ++    VG         
Sbjct: 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFA---VGGQNGLGGLD 216

Query: 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA----- 269
           +++ +D+K +    +W+  + +    +    V+       + ++         G      
Sbjct: 217 NVEYYDIKLN----EWKMVSPM---PWKGVTVKCAAVGSIVYVL-----AGFQGVGRLGH 264

Query: 270 --IYNVELDKWKEMPEGMHAGWNGPAASTMN 298
              YN E DKW    +             ++
Sbjct: 265 ILEYNTETDKWVANSKVRAFPVTSCLICVVD 295

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 40/212 (18%), Positives = 69/212 (32%), Gaps = 44/212 (20%)

Query: 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221
            +     ++P++  W F P ++  RR+ A  S+   +YV   +G +       S++  D 
Sbjct: 29  PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYV---IGGYDGRSRLSSVECLDY 85

Query: 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN----GAKDGA-------I 270
            +D +   W   A +   R            G      L       G  DG+        
Sbjct: 86  TADEDG-VWYSVAPMNVRR------------GLAGATTLGDMIYVSGGFDGSRRHTSMER 132

Query: 271 YNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV--NEGKGRLSK---YDADHDWWDEV 325
           Y+  +D+W  + + M     G      +   +Y +   +G   L+    YD     W  V
Sbjct: 133 YDPNIDQWSMLGD-MQTAREGAGLVVAS-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190

Query: 326 IELAELKGAEKITAARGRVCAVCENGERIMVV 357
             +A           R        N   I VV
Sbjct: 191 TPMAT---------KRSGAGVALLND-HIYVV 212

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 50/213 (23%)

Query: 98  SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIA-- 153
           +SME   +DP    W+ L                         +  G+   + ++     
Sbjct: 128 TSME--RYDPNIDQWSMLGDMQT------------------AREGAGLVVASGVIYCLGG 167

Query: 154 ATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVA 213
               + L ++     ++P +  W     ++  R    +  +   +YV   VG        
Sbjct: 168 YDGLNILNSV---EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYV---VGGFDGTAHL 221

Query: 214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA---- 269
            S++ +++++D     W     +   R     V A   +G L  +        DG     
Sbjct: 222 SSVEAYNIRTD----SWTTVTSMTTPRCY---VGATVLRGRLYAI-----AGYDGNSLLS 269

Query: 270 ---IYNVELDKWKEMPEGMHAGWNGPAASTMNE 299
               Y+  +D W+ +   M           + E
Sbjct: 270 SIECYDPIIDSWEVVTS-MGTQRCDAGVCVLRE 301

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 45/211 (21%)

Query: 98  SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG--VRNNLVLIAA- 154
           SS+E   ++  S+ W  +                          S+G  V   L+     
Sbjct: 124 SSVE--AYNIKSNEWFHVAPMNT------------------RRSSVGVGVVGGLLYAVGG 163

Query: 155 TTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVAR 214
                   L++   +N  +N W +  ++S  R    +G +  ++Y    VG H    V +
Sbjct: 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYA---VGGHDGPLVRK 220

Query: 215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA----- 269
           S++ +D  ++     W + A +   R     V AV   G L +V     G  DG+     
Sbjct: 221 SVEVYDPTTN----AWRQVADMNMCR-RNAGVCAVN--GLLYVV-----GGDDGSCNLAS 268

Query: 270 --IYNVELDKWKEMPEGMHAGWNGPAASTMN 298
              YN   DKW  +   M  G +    + ++
Sbjct: 269 VEYYNPTTDKWTVVSSCMSTGRSYAGVTVID 299

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 49/214 (22%)

Query: 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221
           A+ S   ++ +   W    +L   R    M  + G+V+    VG        R++  +D 
Sbjct: 28  AIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFA---VGGFNGSLRVRTVDSYDP 84

Query: 222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN----GAKDGA-------I 270
             D+    W   A ++D R              L    L G     G  DG+        
Sbjct: 85  VKDQ----WTSVANMRDRR------------STLGAAVLNGLLYAVGGFDGSTGLSSVEA 128

Query: 271 YNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVV----NEGKGRLSK---YDADHDWWD 323
           YN++ ++W  +   M+   +      +    LY V       +  LS    Y+A  + W 
Sbjct: 129 YNIKSNEWFHVAP-MNTRRSSVGVGVVG-GLLYAVGGYDVASRQCLSTVECYNATTNEWT 186

Query: 324 EVIELAELKGAEKITAARGRVCAVCENGERIMVV 357
            + E++           R        N   +  V
Sbjct: 187 YIAEMST---------RRSGAGVGVLNN-LLYAV 210

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.1 bits (135), Expect = 7e-09
 Identities = 29/237 (12%), Positives = 58/237 (24%), Gaps = 48/237 (20%)

Query: 97  NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI---- 152
            ++            W  L A P  P      R  +         +    +  + +    
Sbjct: 30  GTAWYKLDTQAKDKKWTALAAFPGGP------RDQA---------TSAFIDGNLYVFGGI 74

Query: 153 AATTPHFLPALASPLAFNPQSNTWF-FGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGD 211
              +            +NP++N+W        +           G  YV  GV  +    
Sbjct: 75  GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNG 134

Query: 212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIY 271
                +  +              ++    F +   E   F   L               +
Sbjct: 135 ---YFEDLNEAGK----DSTAIDKINAHYFDK-KAEDYFFNKFLL-------------SF 173

Query: 272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVN-EGKGRLS-----KYDADHDWW 322
           +    +W    E    G  G A      ++ +++N E K  L      + D   +  
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKG-DKTWLINGEAKPGLRTDAVFELDFTGNNL 229

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 34/263 (12%), Positives = 68/263 (25%), Gaps = 59/263 (22%)

Query: 88  HNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNP-----------------------PL 124
              N+        +   ++P +++W  L +                              
Sbjct: 74  IGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFN 133

Query: 125 RLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI 184
                          +  +          A    F   L   L+F+P +  W +  +   
Sbjct: 134 GYFEDLNEAGKDSTAIDKINAH--YFDKKAEDYFFNKFL---LSFDPSTQQWSYAGESPW 188

Query: 185 PRR-WCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR 243
                 A+ + G   ++ +G          R+   ++L     + KW K A +       
Sbjct: 189 YGTAGAAVVNKGDKTWLING----EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244

Query: 244 EAVEAV-----------GFKGNLCMVNLKGNGAKDGA-------IYNVELDKWKE---MP 282
                +           GFKG+        N A +G        I+     KW +   + 
Sbjct: 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304

Query: 283 EGMHAGWNGPAASTMNEEELYVV 305
           +G   G      S      L ++
Sbjct: 305 QGRAYG-----VSLPWNNSLLII 322

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 24/158 (15%)

Query: 180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG 239
           P+  +P +          VY+  G               + L +  +D KW   A    G
Sbjct: 4   PETPVPFKSGTGAIDNDTVYIGLGSA---------GTAWYKLDTQAKDKKWTALAAFPGG 54

Query: 240 RFSREAVEAVGFKGNLCMV---NLKGNGA----KDGAIYNVELDKWKEMPEGMHAGWNGP 292
              R+   +    GNL +         G      D   YN + + W ++      G  G 
Sbjct: 55  P--RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112

Query: 293 AASTMNEEELYVV-----NEGKGRLSKYDADHDWWDEV 325
                N  + YV      N   G     +        +
Sbjct: 113 VTFVHN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAI 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.17
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.1
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.57
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.12
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.06
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.03
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.93
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.92
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.76
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.76
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.62
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.56
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.55
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.49
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.47
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.44
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.43
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.41
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.36
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.33
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.27
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.26
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.26
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.23
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.21
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.21
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.16
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.13
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.06
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.05
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.02
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.02
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.99
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.99
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.99
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.98
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.95
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.93
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.88
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.87
3jro_A	753	Fusion protein of protein transport protein SEC13	96.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.8
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.76
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.75
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.75
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.74
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.68
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.61
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.6
2pm7_B	297	Protein transport protein SEC13, protein transport	96.6
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.54
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.54
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.5
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.5
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.49
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.44
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.4
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.4
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.35
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.34
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.33
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.31
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.26
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.24
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.23
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.17
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.16
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.15
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.14
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.12
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.03
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.03
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.02
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.99
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.99
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.86
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.8
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.77
3jro_A	753	Fusion protein of protein transport protein SEC13	95.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.75
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.71
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.68
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.62
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.61
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.56
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.56
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.51
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.5
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.49
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.44
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.41
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.4
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.37
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.29
2pm7_B	297	Protein transport protein SEC13, protein transport	95.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.24
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.23
3ott_A	758	Two-component system sensor histidine kinase; beta	95.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.2
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.12
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.01
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.99
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.95
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.73
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.7
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.68
3ott_A	758	Two-component system sensor histidine kinase; beta	94.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.63
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.58
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.51
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	94.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.36
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.32
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	94.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	94.26
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.06
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.01
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.0
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.0
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	93.93
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	93.89
2ece_A	462	462AA long hypothetical selenium-binding protein;	93.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.88
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.87
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.63
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	93.44
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	93.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.21
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	93.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.93
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	92.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	92.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	92.71
2qe8_A	343	Uncharacterized protein; structural genomics, join	92.64
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	92.47
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.36
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.2
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	92.16
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.13
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	92.11
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	92.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	92.01
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	91.79
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	91.59
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	91.53
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	91.49
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.47
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	91.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	90.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	90.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.53
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	90.24
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.1
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	90.07
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	89.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	88.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	88.2
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	87.59
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	86.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	86.03
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	85.97
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	85.87
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	85.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	85.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	85.13
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	84.92
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.03
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	83.64
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	83.25
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	81.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	80.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	80.58

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=283.80  Aligned_cols=238  Identities=16%  Similarity=0.296  Sum_probs=209.0

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..+++||+.+++|..++++|. +|..              +.++..++.+|++||....  ...+++++||+.+++|+.+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~lyv~GG~~~~--~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPS-RRCR--------------AGMVYMAGLVFAVGGFNGS--LRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSS-CCBS--------------CEEEEETTEEEEESCBCSS--SBCCCEEEEETTTTEEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCc-cccc--------------ceEEEECCEEEEEeCcCCC--ccccceEEECCCCCceeeC
Confidence            458999999999999998888 6653              1667778889998887544  5678999999999999999


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368          180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN  259 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g  259 (390)
                      +++|.+|..|++++++++||++||...   ....+++++||+.+++    |+.++++|.++.   .+++++++++||++|
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNE----WFHVAPMNTRRS---SVGVGVVGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECS---SCEEEEEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEEC
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCC---CccCceEEEEeCCCCe----EeecCCCCCccc---CceEEEECCEEEEEe
Confidence            999999999999999999999999876   4567899999999999    999999998776   688999999999999


Q ss_pred             ccCCC----CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEcccccc
Q 016368          260 LKGNG----AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVIELAE  330 (390)
Q Consensus       260 g~g~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~~~p~  330 (390)
                      |....    ..+.++||+.+++|+.+++ +|.++..+++++ ++++||++||.+     +++++||+++++|+++..+|.
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  240 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM  240 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCC-CccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence            76322    4568899999999999988 889999998887 999999999964     389999999999999999999


Q ss_pred             cccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368          331 LKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       331 ~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~  369 (390)
                      +|..++++.++++|||+|+.+     .++++||+.+.   +|..
T Consensus       241 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~  281 (302)
T 2xn4_A          241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD---KWTV  281 (302)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT---EEEE
T ss_pred             ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC---eEEE
Confidence            999999999999999998642     47999999988   8983

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=286.07  Aligned_cols=250  Identities=14%  Similarity=0.233  Sum_probs=217.4

Q ss_pred             ccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEE
Q 016368           74 FSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIA  153 (390)
Q Consensus        74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  153 (390)
                      ..+|++++..              ....+++||+.+++|..++++|. +|..              +.++.+++.+|++|
T Consensus        12 ~~l~~~GG~~--------------~~~~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~lyv~G   62 (306)
T 3ii7_A           12 DYRIALFGGS--------------QPQSCRYFNPKDYSWTDIRCPFE-KRRD--------------AACVFWDNVVYILG   62 (306)
T ss_dssp             CEEEEEECCS--------------STTSEEEEETTTTEEEECCCCSC-CCBS--------------CEEEEETTEEEEEC
T ss_pred             ceEEEEeCCC--------------CCceEEEecCCCCCEecCCCCCc-ccce--------------eEEEEECCEEEEEe
Confidence            5677776644              24568999999999999999988 7754              16777888899888


Q ss_pred             eecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368          154 ATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK  233 (390)
Q Consensus       154 G~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~  233 (390)
                      |..   ....+++++||+.+++|+.++++|.+|..|++++++++||++||.+..  ....+++++||+.+++    |+.+
T Consensus        63 G~~---~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~d~~~~~----W~~~  133 (306)
T 3ii7_A           63 GSQ---LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVG--NSALYLFECYDTRTES----WHTK  133 (306)
T ss_dssp             CBS---SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTT--BSCCCCEEEEETTTTE----EEEE
T ss_pred             CCC---CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCC--CcEeeeEEEEeCCCCc----eEeC
Confidence            876   267889999999999999999999999999999999999999998732  5577899999999999    9999


Q ss_pred             ccCCCCCccccceEEEEECCEEEEEcccCCC------CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC
Q 016368          234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNG------AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE  307 (390)
Q Consensus       234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg  307 (390)
                      +++|.++.   .++++.++++||++||....      ..+.++||+++++|+.+++ ++.++..+++++ ++++||++||
T Consensus       134 ~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~i~v~GG  208 (306)
T 3ii7_A          134 PSMLTQRC---SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVF-VKDKIFAVGG  208 (306)
T ss_dssp             CCCSSCCB---SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTEEEEECC
T ss_pred             CCCcCCcc---eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEE-ECCEEEEEeC
Confidence            99998876   68899999999999976222      4668899999999999998 889999999998 9999999999


Q ss_pred             CC-----CcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe
Q 016368          308 GK-----GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV  369 (390)
Q Consensus       308 ~~-----~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~  369 (390)
                      .+     .++++||+++++|++++.+|.+|..+++++++++|||+|+.     .+++++||+.+.   +|..
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~---~W~~  277 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD---KWVA  277 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT---EEEE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC---eEEe
Confidence            64     38999999999999999999999999999999999999864     358999999988   8983

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=9.7e-37  Score=281.18  Aligned_cols=260  Identities=18%  Similarity=0.259  Sum_probs=219.1

Q ss_pred             cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEE
Q 016368           73 FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLI  152 (390)
Q Consensus        73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (390)
                      ...+|++++..            ......+++||+.+++|..++++|. +|..              +.++..++.+|++
T Consensus        24 ~~~i~v~GG~~------------~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~lyv~   76 (308)
T 1zgk_A           24 GRLIYTAGGYF------------RQSLSYLEAYNPSNGTWLRLADLQV-PRSG--------------LAGCVVGGLLYAV   76 (308)
T ss_dssp             CCCEEEECCBS------------SSBCCCEEEEETTTTEEEECCCCSS-CCBS--------------CEEEEETTEEEEE
T ss_pred             CCEEEEEeCcC------------CCCcceEEEEcCCCCeEeECCCCCc-cccc--------------ceEEEECCEEEEE
Confidence            45677776532            1334568999999999999998888 7653              1667778889999


Q ss_pred             EeecC--CCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCcccccc
Q 016368          153 AATTP--HFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKW  230 (390)
Q Consensus       153 gG~~~--~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W  230 (390)
                      ||...  ......+++++||+.+++|+.++++|.+|..|++++++++||++||...   ....+++++||+.+++    |
T Consensus        77 GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~----W  149 (308)
T 1zgk_A           77 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----W  149 (308)
T ss_dssp             CCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----E
T ss_pred             CCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCe----E
Confidence            88731  1114678999999999999999999999999999999999999999876   4567899999999999    9


Q ss_pred             EEcccCCCCCccccceEEEEECCEEEEEcccCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC
Q 016368          231 EKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG  308 (390)
Q Consensus       231 ~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~  308 (390)
                      +.++++|.++.   .+++++++++||++||....  ..+.++||+.+++|+.++. ++.++..+++++ ++++||++||.
T Consensus       150 ~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~  224 (308)
T 1zgk_A          150 HLVAPMLTRRI---GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCV-LHNCIYAAGGY  224 (308)
T ss_dssp             EECCCCSSCCB---SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             eECCCCCcccc---ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEE-ECCEEEEEeCC
Confidence            99999998776   68899999999999976322  4668899999999999998 889999999888 99999999996


Q ss_pred             C-----CcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe--cCCCC
Q 016368          309 K-----GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV--DPPRG  374 (390)
Q Consensus       309 ~-----~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~--~~p~g  374 (390)
                      +     .++++||+++++|+++..+|.+|..+++++++++|||+|+.     .+++++||+.+.   +|..  .+|..
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~  299 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD---TWSEVTRMTSG  299 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSC
T ss_pred             CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC---EEeecCCCCCC
Confidence            4     48999999999999999999999999999999999999864     348999999988   8983  35543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=276.80  Aligned_cols=238  Identities=18%  Similarity=0.347  Sum_probs=209.1

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCc---e
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNT---W  176 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~---W  176 (390)
                      ..+++||+.+++|..++++|. +|..              +.++..++.+|++||....  ...+++++||+.+++   |
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~l~v~GG~~~~--~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITR-KRRY--------------VASVSLHDRIYVIGGYDGR--SRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBS--------------CEEEEETTEEEEECCBCSS--CBCCCEEEEETTCCTTCCC
T ss_pred             eEEEEEcCCCCeEEeCCCCCh-hhcc--------------ccEEEECCEEEEEcCCCCC--ccCceEEEEECCCCCCCee
Confidence            468999999999999998888 6643              1667778889998887533  567899999999999   9


Q ss_pred             ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEE
Q 016368          177 FFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLC  256 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~ly  256 (390)
                      +.++++|.+|..|++++++++||++||...   ....+++++||+.+++    |+.++++|.++.   .+++++++++||
T Consensus        94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iy  163 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQ----WSMLGDMQTARE---GAGLVVASGVIY  163 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTE----EEEEEECSSCCB---SCEEEEETTEEE
T ss_pred             EECCCCCCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCe----EEECCCCCCCcc---cceEEEECCEEE
Confidence            999999999999999999999999999876   4467899999999999    999999988776   688999999999


Q ss_pred             EEcccCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEccccc
Q 016368          257 MVNLKGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       257 v~gg~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~~~p  329 (390)
                      ++||....  ..++++||+.+++|+.+++ +|.++..+++++ ++++||++||.+     .++++||+++++|+++..+|
T Consensus       164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          164 CLGGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EECCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            99976322  4568899999999999988 889999999888 999999999964     38999999999999999999


Q ss_pred             ccccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe
Q 016368          330 ELKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       330 ~~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~  369 (390)
                      .+|..+++++++++|||+|+.+     .++++||+.+.   +|..
T Consensus       242 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~  283 (301)
T 2vpj_A          242 TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID---SWEV  283 (301)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT---EEEE
T ss_pred             CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC---eEEE
Confidence            9999999999999999998643     47999999988   8983

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=6.9e-36  Score=276.33  Aligned_cols=242  Identities=16%  Similarity=0.224  Sum_probs=203.3

Q ss_pred             eEEEEeCCCCCceeCCCCCC-CCCcccccccccccccCCCceEEeecCeEEEEEeec----CCCCCCCCCcEEEeCCCCc
Q 016368          101 EFFCFDPISSTWNPLPAPPQ-NPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATT----PHFLPALASPLAFNPQSNT  175 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~----~~~~~~~~~~~~~dp~t~~  175 (390)
                      .+++||+.+++|.. +++|. .+|..              ++++..++.+|++||..    .......+++++||+.+++
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   78 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPKNH--------------VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE   78 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCSSE--------------EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred             ceEEECCCCCeEec-CCCCCCCCccc--------------eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence            58999999999987 54543 14432              15666778899999862    1111334569999999999


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEE
Q 016368          176 WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNL  255 (390)
Q Consensus       176 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~l  255 (390)
                      |+.++++|.+|..|++++++++||++||..........+++++||+.+++    |+.++++|.++.   .++++.++++|
T Consensus        79 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i  151 (315)
T 4asc_A           79 WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVY---GHTVLSHMDLV  151 (315)
T ss_dssp             EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEE
T ss_pred             EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCccc---ceeEEEECCEE
Confidence            99999999999999999999999999997532224578899999999999    999999998876   68899999999


Q ss_pred             EEEcccCCC---CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEccc
Q 016368          256 CMVNLKGNG---AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIE  327 (390)
Q Consensus       256 yv~gg~g~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~  327 (390)
                      |++||...+   ..++++||+.+++|+.+++ +|.+|..+++++ ++++||++||.++     ++++||+++++|+++.+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            999976222   3568899999999999998 889999999988 9999999999654     79999999999999999


Q ss_pred             ccccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceEe
Q 016368          328 LAELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       328 ~p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~~  369 (390)
                      +|.+|..+++++++++|||+|+..              +++++||+.+.   +|+.
T Consensus       230 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~  282 (315)
T 4asc_A          230 FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK---KWEG  282 (315)
T ss_dssp             CSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT---EEEE
T ss_pred             CCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC---hhhh
Confidence            999999999999999999998642              36899999988   8994

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=6.7e-35  Score=270.06  Aligned_cols=244  Identities=14%  Similarity=0.239  Sum_probs=201.5

Q ss_pred             eEEEEeCCCCCceeCCCCCC-CCCcccccccccccccCCCceEEeecCeEEEEEeecCC---C-CCCCCCcEEEeCCCCc
Q 016368          101 EFFCFDPISSTWNPLPAPPQ-NPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPH---F-LPALASPLAFNPQSNT  175 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~---~-~~~~~~~~~~dp~t~~  175 (390)
                      .+++||+.+++|... +++. .+|..              ++++..++.+|++||....   . ....+++++||+.+++
T Consensus        25 ~~~~yd~~~~~W~~~-~~~~~~~r~~--------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           25 AAVAYDPMENECYLT-ALAEQIPRNH--------------SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEEEETTTTEEEEE-EECTTSCSSE--------------EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             ceEEECCCCCceecc-cCCccCCccc--------------eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            379999999999984 3332 14432              1566677889999985311   1 1223459999999999


Q ss_pred             eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEE
Q 016368          176 WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNL  255 (390)
Q Consensus       176 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~l  255 (390)
                      |+.++++|.+|..|++++++++||++||.... .....+++++||+.+++    |+.++++|.++.   .+++++.+++|
T Consensus        90 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i  161 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ-TEASLDSVLCYDPVAAK----WSEVKNLPIKVY---GHNVISHNGMI  161 (318)
T ss_dssp             EEECSCBSSCBCSCEEEEETTEEEEEEEEBTT-TCCEEEEEEEEETTTTE----EEEECCCSSCEE---SCEEEEETTEE
T ss_pred             EEECCCCCccccccceEEECCEEEEEcCccCC-CCcccceEEEEeCCCCC----EeECCCCCCccc---ccEEEEECCEE
Confidence            99999999999999999999999999998631 14567899999999999    999999998776   68889999999


Q ss_pred             EEEcccCC---CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEccc
Q 016368          256 CMVNLKGN---GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIE  327 (390)
Q Consensus       256 yv~gg~g~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~  327 (390)
                      |++||...   ...++++||+.+++|+.+++ ++.++..+++++ ++++||++||.++     ++++||+++++|+++..
T Consensus       162 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  239 (318)
T 2woz_A          162 YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE  239 (318)
T ss_dssp             EEECCEESSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC
T ss_pred             EEEcCCCCCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC
Confidence            99997622   24568999999999999998 889999999888 9999999999543     78999999999999999


Q ss_pred             ccccccceeEEEECCEEEEEeeCC--------------ceEEEEEcCCCCCcceEecCC
Q 016368          328 LAELKGAEKITAARGRVCAVCENG--------------ERIMVVDVLASPARAWLVDPP  372 (390)
Q Consensus       328 ~p~~r~~~~~~~~~g~l~i~g~~~--------------~~v~~~d~~~~~~~~W~~~~p  372 (390)
                      +|.+|..+++++++++|||+|+..              +++++||+.+.   +|...+|
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~  295 (318)
T 2woz_A          240 FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK---EWAGMLK  295 (318)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT---EEEEEES
T ss_pred             CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC---Eehhhcc
Confidence            999999999999999999998642              47999999988   8994333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=260.62  Aligned_cols=221  Identities=19%  Similarity=0.259  Sum_probs=191.9

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecC-CCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTP-HFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~-~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ..+++||+.+++|..++++|. +|..              +.++.+++.+|++||... ......+++++||+.+++|+.
T Consensus        67 ~~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~  131 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMPPLPS-PRCL--------------FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE  131 (315)
T ss_dssp             EEEEEEETTTTEEEECCCBSS-CEES--------------CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE
T ss_pred             cceEEecCCCCeEEECCCCCc-chhc--------------eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE
Confidence            358999999999999999988 7754              167777889999998753 223678999999999999999


Q ss_pred             CCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEE
Q 016368          179 GPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMV  258 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~  258 (390)
                      ++++|.+|..|++++++++||++||....  ....+++++||+.+++    |+.++++|.++.   .+++++++++||++
T Consensus       132 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~  202 (315)
T 4asc_A          132 SDPLPYVVYGHTVLSHMDLVYVIGGKGSD--RKCLNKMCVYDPKKFE----WKELAPMQTARS---LFGATVHDGRIIVA  202 (315)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCTT--SCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEEE
T ss_pred             CCCCCCcccceeEEEECCEEEEEeCCCCC--CcccceEEEEeCCCCe----EEECCCCCCchh---ceEEEEECCEEEEE
Confidence            99999999999999999999999998542  5678899999999999    999999998776   68899999999999


Q ss_pred             cccCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC--------------CcEEEEECCCCce
Q 016368          259 NLKGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK--------------GRLSKYDADHDWW  322 (390)
Q Consensus       259 gg~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~v~~yd~~~~~W  322 (390)
                      ||....  ..++++||+++++|+.+++ +|.++..+++++ ++++||++||.+              .++++||+++++|
T Consensus       203 GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          203 AGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             eccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            976432  2467899999999999998 889999999888 999999999963              2689999999999


Q ss_pred             EEcccccccccceeEEEECCEEEEEe
Q 016368          323 DEVIELAELKGAEKITAARGRVCAVC  348 (390)
Q Consensus       323 ~~i~~~p~~r~~~~~~~~~g~l~i~g  348 (390)
                      +++  ++.+|..+++++++++||++.
T Consensus       281 ~~~--~~~~r~~~~~~~~~~~l~v~~  304 (315)
T 4asc_A          281 EGV--LREIAYAAGATFLPVRLNVLR  304 (315)
T ss_dssp             EEE--ESCSSCCSSCEEEEEEECGGG
T ss_pred             hhh--ccCCcCccceEEeCCEEEEEE
Confidence            999  566788899999999999984

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=6.5e-33  Score=260.77  Aligned_cols=245  Identities=13%  Similarity=0.154  Sum_probs=192.8

Q ss_pred             eEEEEeCC--CCCceeCCCCC-CCCCcccccccccccccCCCceEEeecCeEEEEEee-c--CCCCCCCCCcEEEeCCCC
Q 016368          101 EFFCFDPI--SSTWNPLPAPP-QNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAAT-T--PHFLPALASPLAFNPQSN  174 (390)
Q Consensus       101 ~~~~~d~~--~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~-~--~~~~~~~~~~~~~dp~t~  174 (390)
                      .+++||+.  +++|..++++| . +|..              ++++++++.+|++||. .  .......+++++||+.++
T Consensus        32 ~~~~~d~~~~~~~W~~~~~~p~~-~R~~--------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALAAFPGG-PRDQ--------------ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             CEEEEETTSSSCCEEECCCCTTC-CCBS--------------CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             eEEEEccccCCCCeeECCCCCCC-cCcc--------------ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            68999998  49999999998 5 6653              1677788899999987 2  122246789999999999


Q ss_pred             ceecCCCCC-CCCcceEEEEECCEEEEEeccCCCC-------------------------------CCCccCeEEEEECC
Q 016368          175 TWFFGPQLS-IPRRWCAMGSVGGVVYVASGVGAHY-------------------------------RGDVARSMKKWDLK  222 (390)
Q Consensus       175 ~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~  222 (390)
                      +|+.+++++ .+|..|++++++++||++||.....                               .....+++++||+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            999999998 9999999999999999999986420                               00245899999999


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC---CCceeEEEeC--CCCCeEecCCCCCCCCC--CceEE
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN---GAKDGAIYNV--ELDKWKEMPEGMHAGWN--GPAAS  295 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~---~~~~~~~yd~--~~~~W~~~~~~~~~~~~--~~~~~  295 (390)
                      +++    |+.++++|.++.  ..+++++.+++||++||...   ...++++||+  ++++|+.++. ++.++.  .++++
T Consensus       177 ~~~----W~~~~~~p~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~-~~~~~~~~~~~~~  249 (357)
T 2uvk_A          177 TQQ----WSYAGESPWYGT--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP-VSSPDGVAGGFAG  249 (357)
T ss_dssp             TTE----EEEEEECSSCCC--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCC-SSTTTCCBSCEEE
T ss_pred             CCc----EEECCCCCCCCc--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC-CCCCcccccceEE
Confidence            999    999999886543  14888999999999987521   1345678876  8999999988 655543  55577


Q ss_pred             EeeCCeEEEEeCCC----------------------CcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC--
Q 016368          296 TMNEEELYVVNEGK----------------------GRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG--  351 (390)
Q Consensus       296 ~~~~g~lyv~gg~~----------------------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~--  351 (390)
                      + .+++||++||..                      .++++||+++++|+++..+|.+|..++++.++++|||+||.+  
T Consensus       250 ~-~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~  328 (357)
T 2uvk_A          250 I-SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG  328 (357)
T ss_dssp             E-ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGG
T ss_pred             E-ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCC
Confidence            6 999999999942                      268999999999999999999999999999999999999642  


Q ss_pred             ----ceEEEEEcCCCCCcceEecC
Q 016368          352 ----ERIMVVDVLASPARAWLVDP  371 (390)
Q Consensus       352 ----~~v~~~d~~~~~~~~W~~~~  371 (390)
                          ++++++++.++   +|....
T Consensus       329 ~~~~~~v~~l~~~~~---~~~~~~  349 (357)
T 2uvk_A          329 GKAVTDSVLITVKDN---KVTVQN  349 (357)
T ss_dssp             GCEEEEEEEEEC-CC---SCEEEC
T ss_pred             CCEeeeEEEEEEcCc---EeEeee
Confidence                37889999988   787443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-33  Score=260.95  Aligned_cols=220  Identities=20%  Similarity=0.301  Sum_probs=191.7

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      .+++||+.+++|..++++|. +|..              +.++++++.+|++||.........+++++||+.+++|+.++
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~-~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~  143 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPS-ARCL--------------FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK  143 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSS-CBCS--------------CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred             cEEEEeCCCCcEEECCCCCc-cccc--------------cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence            48999999999999999988 7743              16777888999999986433356789999999999999999


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368          181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL  260 (390)
Q Consensus       181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg  260 (390)
                      ++|.+|..|++++++++||++||....  ....+++++||+.+++    |+.++++|.++.   .+++++++++||++||
T Consensus       144 ~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG  214 (318)
T 2woz_A          144 NLPIKVYGHNVISHNGMIYCLGGKTDD--KKCTNRVFIYNPKKGD----WKDLAPMKTPRS---MFGVAIHKGKIVIAGG  214 (318)
T ss_dssp             CCSSCEESCEEEEETTEEEEECCEESS--SCBCCCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEEEE
T ss_pred             CCCCcccccEEEEECCEEEEEcCCCCC--CCccceEEEEcCCCCE----EEECCCCCCCcc---cceEEEECCEEEEEcC
Confidence            999999999999999999999998643  4567899999999999    999999998776   6889999999999997


Q ss_pred             cCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC--------------CcEEEEECCCCceEE
Q 016368          261 KGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK--------------GRLSKYDADHDWWDE  324 (390)
Q Consensus       261 ~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~v~~yd~~~~~W~~  324 (390)
                      ....  ..++++||+++++|+.++. +|.++..+++++ ++++||++||.+              .++++||+++++|++
T Consensus       215 ~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          215 VTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             EETTEEEEEEEEEETTTCCEEECCC-CSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             cCCCCccceEEEEECCCCeEEECCC-CCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            6332  2467899999999999998 888999988887 999999999953              379999999999999


Q ss_pred             cccccccccceeEEEECCEEEEEe
Q 016368          325 VIELAELKGAEKITAARGRVCAVC  348 (390)
Q Consensus       325 i~~~p~~r~~~~~~~~~g~l~i~g  348 (390)
                      +  +|..|..+++++++++|||+.
T Consensus       293 ~--~~~~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          293 M--LKEIRYASGASCLATRLNLFK  314 (318)
T ss_dssp             E--ESCCGGGTTCEEEEEEEEGGG
T ss_pred             h--cccccccccceeeCCEEEEEE
Confidence            9  788899999999999999873

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=253.71  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=203.7

Q ss_pred             HhhhHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccc
Q 016368           55 FSVCHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLL  127 (390)
Q Consensus        55 r~Vck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~  127 (390)
                      ....++|..+..-|.-..       ...+|++++...           ......+++||+.+++|..++++|. +|..  
T Consensus        36 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-----------~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~--  101 (302)
T 2xn4_A           36 DFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNG-----------SLRVRTVDSYDPVKDQWTSVANMRD-RRST--  101 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCS-----------SSBCCCEEEEETTTTEEEEECCCSS-CCBS--
T ss_pred             cCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCC-----------CccccceEEECCCCCceeeCCCCCc-cccc--
Confidence            344556776644333111       356777655330           0223468999999999999999988 7653  


Q ss_pred             cccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCC
Q 016368          128 YRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAH  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~  207 (390)
                                  +.++.+++.+|++||....  ...+++++||+.+++|+.++++|.+|..|++++++++||++||....
T Consensus       102 ------------~~~~~~~~~iyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  167 (302)
T 2xn4_A          102 ------------LGAAVLNGLLYAVGGFDGS--TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA  167 (302)
T ss_dssp             ------------CEEEEETTEEEEEEEECSS--CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred             ------------eEEEEECCEEEEEcCCCCC--ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC
Confidence                        1677778899999997654  45688999999999999999999999999999999999999998653


Q ss_pred             CCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--CceeEEEeCCCCCeEecCCCC
Q 016368          208 YRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--AKDGAIYNVELDKWKEMPEGM  285 (390)
Q Consensus       208 ~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~~~~~~yd~~~~~W~~~~~~~  285 (390)
                       .....+++++||+.+++    |+.++++|.++.   .+++++++++||++||....  ..++++||+++++|+.++. +
T Consensus       168 -~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~  238 (302)
T 2xn4_A          168 -SRQCLSTVECYNATTNE----WTYIAEMSTRRS---GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-M  238 (302)
T ss_dssp             -TTEECCCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-C
T ss_pred             -CCccccEEEEEeCCCCc----EEECCCCccccc---cccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-C
Confidence             11357899999999999    999999988776   68899999999999976322  3568899999999999998 8


Q ss_pred             CCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcc-cccccccceeEEEECCEE
Q 016368          286 HAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVI-ELAELKGAEKITAARGRV  344 (390)
Q Consensus       286 ~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~g~l  344 (390)
                      +.++..+++++ ++++||++||.++     ++++||+++++|+.++ .+|.+|..+++++++++|
T Consensus       239 ~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i  302 (302)
T 2xn4_A          239 NMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL  302 (302)
T ss_dssp             SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred             CCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEecccC
Confidence            88898888887 9999999999653     7999999999999997 899999999999998875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=8.7e-33  Score=254.69  Aligned_cols=254  Identities=16%  Similarity=0.264  Sum_probs=204.9

Q ss_pred             chhhHhhhHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCC
Q 016368           51 PALLFSVCHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPP  123 (390)
Q Consensus        51 l~~~r~Vck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~  123 (390)
                      +..+....++|..+..-|.-..       ...+|++++.....       ........+++||+.+++|..++++|. +|
T Consensus        41 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-------~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r  112 (308)
T 1zgk_A           41 LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP-------DGNTDSSALDCYNPMTNQWSPCAPMSV-PR  112 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEET-------TEEEECCCEEEEETTTTEEEECCCCSS-CC
T ss_pred             EEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCC-------CCCeecceEEEECCCCCeEeECCCCCc-Cc
Confidence            4445556677887754443211       45667765431000       000122458999999999999999988 76


Q ss_pred             cccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEec
Q 016368          124 LRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASG  203 (390)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG  203 (390)
                      ..              +.++.+++.+|++||....  ...+++++||+.+++|+.++++|.+|..|++++++++||++||
T Consensus       113 ~~--------------~~~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  176 (308)
T 1zgk_A          113 NR--------------IGVGVIDGHIYAVGGSHGC--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG  176 (308)
T ss_dssp             BT--------------CEEEEETTEEEEECCEETT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             cc--------------cEEEEECCEEEEEcCCCCC--cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence            53              1677778899999987654  4578999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--CceeEEEeCCCCCeEec
Q 016368          204 VGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--AKDGAIYNVELDKWKEM  281 (390)
Q Consensus       204 ~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~~~~~~yd~~~~~W~~~  281 (390)
                      ...   ....+++++||+.+++    |+.++++|.++.   .+++++++++||++||....  ..++++||+++++|+.+
T Consensus       177 ~~~---~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          177 FDG---TNRLNSAECYYPERNE----WRMITAMNTIRS---GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             BCS---SCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCC---CCcCceEEEEeCCCCe----EeeCCCCCCccc---cceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            876   3457899999999999    999999998776   68899999999999976322  36689999999999999


Q ss_pred             CCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccccccceeEEEE
Q 016368          282 PEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAELKGAEKITAA  340 (390)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~  340 (390)
                      +. ++.++..+++++ ++++||++||.++     ++++||+++++|++++.+|.+|..++++++
T Consensus       247 ~~-~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l  308 (308)
T 1zgk_A          247 AP-MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT  308 (308)
T ss_dssp             CC-CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred             CC-CCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence            98 889999999888 9999999999543     899999999999999999999998888763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=255.51  Aligned_cols=253  Identities=15%  Similarity=0.242  Sum_probs=204.3

Q ss_pred             hhHhhhHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcc
Q 016368           53 LLFSVCHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLR  125 (390)
Q Consensus        53 ~~r~Vck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~  125 (390)
                      .+-...++|..+...|.-..       ...+|++++..            ......+++||+.+++|..++++|. +|..
T Consensus        28 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~------------~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~   94 (306)
T 3ii7_A           28 YFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ------------LFPIKRMDCYNVVKDSWYSKLGPPT-PRDS   94 (306)
T ss_dssp             EEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS------------SSBCCEEEEEETTTTEEEEEECCSS-CCBS
T ss_pred             EecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC------------CCCcceEEEEeCCCCeEEECCCCCc-cccc
Confidence            33445567777654443111       45567665432            1334578999999999999999887 7654


Q ss_pred             cccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccC
Q 016368          126 LLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVG  205 (390)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~  205 (390)
                                    +.++.+++.+|++||..... ...+++++||+.+++|+.++++|.+|..|++++++++||++||..
T Consensus        95 --------------~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           95 --------------LAACAAEGKIYTSGGSEVGN-SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             --------------CEEEEETTEEEEECCBBTTB-SCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             --------------eeEEEECCEEEEECCCCCCC-cEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCC
Confidence                          16677788999998875332 577899999999999999999999999999999999999999987


Q ss_pred             CCCC-CCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--CceeEEEeCCCCCeEecC
Q 016368          206 AHYR-GDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--AKDGAIYNVELDKWKEMP  282 (390)
Q Consensus       206 ~~~~-~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~~~~~~yd~~~~~W~~~~  282 (390)
                      .... ....+++++||+.+++    |+.+++++.++.   .++++.++++||++||....  ..++++||+++++|+.++
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATET----WTELCPMIEARK---NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             CCCCcccccceEEEeCCCCCe----EEECCCccchhh---cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence            5310 1127899999999999    999999998776   68899999999999875322  356789999999999999


Q ss_pred             CCCCCCCCCceEEEeeCCeEEEEeCCC-----CcEEEEECCCCceEEcccccccccceeEEEECC
Q 016368          283 EGMHAGWNGPAASTMNEEELYVVNEGK-----GRLSKYDADHDWWDEVIELAELKGAEKITAARG  342 (390)
Q Consensus       283 ~~~~~~~~~~~~~~~~~g~lyv~gg~~-----~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g  342 (390)
                      . +|.++..+++++ ++++||++||.+     .++++||+++++|++++.+|.+|..++++++.+
T Consensus       233 ~-~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~  295 (306)
T 3ii7_A          233 P-MPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVD  295 (306)
T ss_dssp             C-CSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEE
T ss_pred             C-CCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECC
Confidence            8 889999999988 999999999954     389999999999999999999999888877643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=250.00  Aligned_cols=250  Identities=14%  Similarity=0.212  Sum_probs=204.5

Q ss_pred             hhhHhhhHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCC---ceeCCCCCCC
Q 016368           52 ALLFSVCHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISST---WNPLPAPPQN  121 (390)
Q Consensus        52 ~~~r~Vck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---W~~l~~~p~~  121 (390)
                      ..+....++|..+...|.-..       ...+|++++..           .......+++||+.+++   |..++++|. 
T Consensus        34 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~-----------~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-  101 (301)
T 2vpj_A           34 EKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD-----------GRSRLSSVECLDYTADEDGVWYSVAPMNV-  101 (301)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC-----------SSCBCCCEEEEETTCCTTCCCEEECCCSS-
T ss_pred             EEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC-----------CCccCceEEEEECCCCCCCeeEECCCCCC-
Confidence            334445667777654443211       45667665432           01233568999999999   999999888 


Q ss_pred             CCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEE
Q 016368          122 PPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVA  201 (390)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~  201 (390)
                      +|..              +.++..++.+|++||....  ...+++++||+.+++|+.++++|.+|..|++++++++||++
T Consensus       102 ~r~~--------------~~~~~~~~~lyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  165 (301)
T 2vpj_A          102 RRGL--------------AGATTLGDMIYVSGGFDGS--RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCL  165 (301)
T ss_dssp             CCBS--------------CEEEEETTEEEEECCBCSS--CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEE
T ss_pred             Cccc--------------eeEEEECCEEEEEcccCCC--cccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEE
Confidence            7654              1667778889999887644  45789999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCC--CceeEEEeCCCCCeE
Q 016368          202 SGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNG--AKDGAIYNVELDKWK  279 (390)
Q Consensus       202 GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~--~~~~~~yd~~~~~W~  279 (390)
                      ||.+.   ....+++++||+.+++    |+.++++|.++.   .++++.++++||++||....  ..++++||+++++|+
T Consensus       166 GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~r~---~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          166 GGYDG---LNILNSVEKYDPHTGH----WTNVTPMATKRS---GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             CCBCS---SCBCCCEEEEETTTTE----EEEECCCSSCCB---SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCC---CcccceEEEEeCCCCc----EEeCCCCCcccc---cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            99876   4467899999999999    999999988776   68899999999999976322  356889999999999


Q ss_pred             ecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccccccceeEEEEC
Q 016368          280 EMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAELKGAEKITAAR  341 (390)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~  341 (390)
                      .++. ++.++..+++++ ++++||++||.++     ++++||+++++|+.+..+|.+|..++++++.
T Consensus       236 ~~~~-~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~  300 (301)
T 2vpj_A          236 TVTS-MTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR  300 (301)
T ss_dssp             EECC-CSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred             ECCC-CCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence            9998 888999888887 9999999999653     7999999999999999999999999888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=3e-30  Score=242.60  Aligned_cols=222  Identities=14%  Similarity=0.151  Sum_probs=175.1

Q ss_pred             eCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCC--CCceecCCCCC-CCCcceE
Q 016368          114 PLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQ--SNTWFFGPQLS-IPRRWCA  190 (390)
Q Consensus       114 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~--t~~W~~~~~~~-~~r~~~~  190 (390)
                      .++++|. ++..              ..++.+++.+|++||..      .+++++||+.  +++|+.++++| .+|..|+
T Consensus         2 ~l~~lP~-~r~~--------------~~~~~~~~~iyv~GG~~------~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~   60 (357)
T 2uvk_A            2 VLPETPV-PFKS--------------GTGAIDNDTVYIGLGSA------GTAWYKLDTQAKDKKWTALAAFPGGPRDQAT   60 (357)
T ss_dssp             CSCCCSS-CCCS--------------CEEEEETTEEEEECGGG------TTCEEEEETTSSSCCEEECCCCTTCCCBSCE
T ss_pred             CCCCCCc-cccc--------------eEEEEECCEEEEEeCcC------CCeEEEEccccCCCCeeECCCCCCCcCccce
Confidence            4677777 6643              15556688888888764      2589999998  49999999999 8999999


Q ss_pred             EEEECCEEEEEeccCC--CCCCCccCeEEEEECCCCccccccEEcccCC-CCCccccceEEEEECCEEEEEcccCC----
Q 016368          191 MGSVGGVVYVASGVGA--HYRGDVARSMKKWDLKSDREDWKWEKKAQLK-DGRFSREAVEAVGFKGNLCMVNLKGN----  263 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~--~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~-~~~~~r~~~~~~~~~g~lyv~gg~g~----  263 (390)
                      +++++++|||+||...  .......+++++||+.+++    |+.+++++ .++.   .+++++.+++||++||...    
T Consensus        61 ~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~  133 (357)
T 2uvk_A           61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS----WVKLMSHAPMGMA---GHVTFVHNGKAYVTGGVNQNIFN  133 (357)
T ss_dssp             EEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE----EEECSCCCSSCCS---SEEEEEETTEEEEEECCCHHHHH
T ss_pred             EEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc----EEECCCCCCcccc---cceEEEECCEEEEEeCcCCCcCc
Confidence            9999999999999821  1113567899999999999    99999988 5554   6888889999999997532    


Q ss_pred             --------------------------------CCceeEEEeCCCCCeEecCCCCCCCCC-CceEEEeeCCeEEEEeCC--
Q 016368          264 --------------------------------GAKDGAIYNVELDKWKEMPEGMHAGWN-GPAASTMNEEELYVVNEG--  308 (390)
Q Consensus       264 --------------------------------~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~g~lyv~gg~--  308 (390)
                                                      ...++++||+.+++|+.+++ +|.++. .+++++ .+++||++||.  
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~~~~~~~~~-~~~~iyv~GG~~~  211 (357)
T 2uvk_A          134 GYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE-SPWYGTAGAAVVN-KGDKTWLINGEAK  211 (357)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE-CSSCCCBSCEEEE-ETTEEEEECCEEE
T ss_pred             ccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC-CCCCCcccccEEE-ECCEEEEEeeecC
Confidence                                            13578899999999999987 666554 477777 99999999994  


Q ss_pred             ----CCcEEEEEC--CCCceEEcccccccc--cceeEEEECCEEEEEeeCC----------------------ceEEEEE
Q 016368          309 ----KGRLSKYDA--DHDWWDEVIELAELK--GAEKITAARGRVCAVCENG----------------------ERIMVVD  358 (390)
Q Consensus       309 ----~~~v~~yd~--~~~~W~~i~~~p~~r--~~~~~~~~~g~l~i~g~~~----------------------~~v~~~d  358 (390)
                          ..+++.||+  ++++|+++..+|.++  ..+++++++++|||+|+..                      .++++||
T Consensus       212 ~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd  291 (357)
T 2uvk_A          212 PGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL  291 (357)
T ss_dssp             TTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred             CCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence                347899986  899999999887664  4667899999999998631                      3689999


Q ss_pred             cCCCCCcceE
Q 016368          359 VLASPARAWL  368 (390)
Q Consensus       359 ~~~~~~~~W~  368 (390)
                      +.+.   +|.
T Consensus       292 ~~~~---~W~  298 (357)
T 2uvk_A          292 WHNG---KWD  298 (357)
T ss_dssp             CC------CE
T ss_pred             cCCC---cee
Confidence            9987   898

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=7.7e-29  Score=251.93  Aligned_cols=212  Identities=13%  Similarity=0.166  Sum_probs=180.4

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC-C-----CCCCCcceEEEEE--CCEEEEEeccCCCCCCCc
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP-Q-----LSIPRRWCAMGSV--GGVVYVASGVGAHYRGDV  212 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~  212 (390)
                      +++++++.+|++||...   ...+++++||+.+++|+.++ +     +|.+|.+|+++++  +++|||+||....  ...
T Consensus       392 ~~~~~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~--~~~  466 (695)
T 2zwa_A          392 DVDVAGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP--HQG  466 (695)
T ss_dssp             EEEECSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST--TCB
T ss_pred             EEEEECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC--CCc
Confidence            55557888998888754   46789999999999999987 5     7899999999999  9999999999763  336


Q ss_pred             cCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCC--CCCCC
Q 016368          213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG--MHAGW  289 (390)
Q Consensus       213 ~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~--~~~~~  289 (390)
                      .+++++||+.+++    |+.++++|.++.   .|+++++ +++||++||..... +.++||+.+++|+.++..  +|.++
T Consensus       467 ~~dv~~yd~~t~~----W~~~~~~p~~R~---~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r  538 (695)
T 2zwa_A          467 LSDNWIFDMKTRE----WSMIKSLSHTRF---RHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNS  538 (695)
T ss_dssp             CCCCEEEETTTTE----EEECCCCSBCCB---SCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSC
T ss_pred             cccEEEEeCCCCc----EEECCCCCCCcc---cceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcc
Confidence            7899999999999    999999998877   6888886 99999999774434 899999999999999852  67788


Q ss_pred             CCceEEEeeC---CeEEEEeCCC-------CcEEEEECCCCc------eEEcccc-cccccceeEEEEC-CEEEEEeeC-
Q 016368          290 NGPAASTMNE---EELYVVNEGK-------GRLSKYDADHDW------WDEVIEL-AELKGAEKITAAR-GRVCAVCEN-  350 (390)
Q Consensus       290 ~~~~~~~~~~---g~lyv~gg~~-------~~v~~yd~~~~~------W~~i~~~-p~~r~~~~~~~~~-g~l~i~g~~-  350 (390)
                      .++++++ ++   ++||++||..       +++++||+.+++      |+++..+ +.+|..+++++++ ++|||+||. 
T Consensus       539 ~~~~a~v-~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          539 LVSAGLE-FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             CBSCEEE-EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred             cceeEEE-EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCcc
Confidence            8888665 66   8999999962       379999999999      8999876 4778899999998 999999863 


Q ss_pred             -------CceEEEEEcCCCCCcceEe
Q 016368          351 -------GERIMVVDVLASPARAWLV  369 (390)
Q Consensus       351 -------~~~v~~~d~~~~~~~~W~~  369 (390)
                             .+++++||+.+.   .|..
T Consensus       618 ~~~~~~~~~~v~~yd~~t~---~W~~  640 (695)
T 2zwa_A          618 PSGLFDRTNSIISLDPLSE---TLTS  640 (695)
T ss_dssp             SSCCCCTTTSEEEEETTTT---EEEE
T ss_pred             CCCCCCCCCeEEEEECCCC---eEEE
Confidence                   357999999988   8983

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=1.3e-28  Score=250.16  Aligned_cols=220  Identities=11%  Similarity=0.121  Sum_probs=176.9

Q ss_pred             eeEEEEeCCCCCceeCC-C-----CCCCCCcccccccccccccCCCceEEee--cCeEEEEEeecCCCCCCCCCcEEEeC
Q 016368          100 MEFFCFDPISSTWNPLP-A-----PPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIAATTPHFLPALASPLAFNP  171 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~-~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~~~~dp  171 (390)
                      ..+++||+.+++|..++ +     +|. +|..              ++++++  ++.+|++||..... ...+++++||+
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~--------------hs~~~~~~~~~lyv~GG~~~~~-~~~~dv~~yd~  475 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPV-ARMC--------------HTFTTISRNNQLLLIGGRKAPH-QGLSDNWIFDM  475 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCC-CCBS--------------CEEEEETTTTEEEEECCBSSTT-CBCCCCEEEET
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCc-cccc--------------eEEEEEccCCEEEEEcCCCCCC-CccccEEEEeC
Confidence            45899999999999988 5     444 5533              177777  88888888876542 36789999999


Q ss_pred             CCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc---CCCCCccccceE
Q 016368          172 QSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ---LKDGRFSREAVE  247 (390)
Q Consensus       172 ~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~---~~~~~~~r~~~~  247 (390)
                      .+++|+.++++|.+|..|+++++ +++|||+||....   .   ++++||+.+++    |+.++.   +|.++.   .++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~---~---~v~~yd~~t~~----W~~~~~~g~~p~~r~---~~~  542 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG---P---AMLLYNVTEEI----FKDVTPKDEFFQNSL---VSA  542 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS---C---SEEEEETTTTE----EEECCCSSGGGGSCC---BSC
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC---C---CEEEEECCCCc----eEEccCCCCCCCccc---cee
Confidence            99999999999999999999997 9999999999763   2   89999999999    999987   666655   677


Q ss_pred             EEEEC---CEEEEEcccCCC----CceeEEEeCCCCC------eEecCCCCCCCCCCceEEEeeC-CeEEEEeCCC----
Q 016368          248 AVGFK---GNLCMVNLKGNG----AKDGAIYNVELDK------WKEMPEGMHAGWNGPAASTMNE-EELYVVNEGK----  309 (390)
Q Consensus       248 ~~~~~---g~lyv~gg~g~~----~~~~~~yd~~~~~------W~~~~~~~~~~~~~~~~~~~~~-g~lyv~gg~~----  309 (390)
                      +++++   ++||++||....    ..++++||+.+++      |+.+...++.+|.++++++ ++ ++||++||.+    
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCC
Confidence            67777   899999987332    3568899999999      8888763357888888887 88 9999999943    


Q ss_pred             ----CcEEEEECCCCceEEccccc--------ccccceeEEEECC-EEEEEeeC
Q 016368          310 ----GRLSKYDADHDWWDEVIELA--------ELKGAEKITAARG-RVCAVCEN  350 (390)
Q Consensus       310 ----~~v~~yd~~~~~W~~i~~~p--------~~r~~~~~~~~~g-~l~i~g~~  350 (390)
                          .++++||+++++|+.+. +|        +.+..|+++++++ +|||+||+
T Consensus       622 ~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             CCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence                37999999999999654 32        1345677777765 99999864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=4e-26  Score=231.32  Aligned_cols=263  Identities=11%  Similarity=0.100  Sum_probs=192.1

Q ss_pred             hhHhHHHhhcCCCCCC-------cccEEEEeecCCCCCCCCCCcccCCCceeEEEEeCCCCCceeCCCCCCCCCcccccc
Q 016368           57 VCHSWRRLLYSPYFPP-------FFSLYALLFNNNKPSHNNNNYYSFNSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYR  129 (390)
Q Consensus        57 Vck~W~~l~~s~~f~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~  129 (390)
                      ...+|..+...|....       ..-+|++++.......     ........+++||+.+++|..++.++. ++..  ++
T Consensus       174 ~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~-----~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~--~~  245 (656)
T 1k3i_A          174 GLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFG-----GSPGGITLTSSWDPSTGIVSDRTVTVT-KHDM--FC  245 (656)
T ss_dssp             TSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTC-----SCCCSEEEEEEECTTTCCBCCCEEEEC-SCCC--SS
T ss_pred             CCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccc-----cCCCCeEEEEEEeCCCCcEEeCcccCC-CCCC--cc
Confidence            3457777666665322       2356666654311000     001233468999999999999988776 5432  11


Q ss_pred             cccccccCCCceEEe-ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCC
Q 016368          130 HPSFLSRKLPVQSLG-VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAH  207 (390)
Q Consensus       130 ~~~~~~~~~~~~~~~-~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~  207 (390)
                      |          .++. .++.+|++||...      .++++||+.+++|..+++|+.+|.+|+++++ +++|||+||....
T Consensus       246 ~----------~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~  309 (656)
T 1k3i_A          246 P----------GISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG  309 (656)
T ss_dssp             C----------EEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred             c----------cccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccC
Confidence            0          2333 4677888887532      3799999999999999999999999999999 9999999995332


Q ss_pred             CCCCccCeEEEEECCCCccccccEEcc-----cCCCCCc-----------------------------------------
Q 016368          208 YRGDVARSMKKWDLKSDREDWKWEKKA-----QLKDGRF-----------------------------------------  241 (390)
Q Consensus       208 ~~~~~~~~~~~yd~~t~~~~~~W~~~~-----~~~~~~~-----------------------------------------  241 (390)
                        ....+++++||+.+++    |+.++     +++..+.                                         
T Consensus       310 --~~~~~~~e~yd~~t~~----W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          310 --GVFEKNGEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             --SSCCCCEEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             --CcccccceEeCCCCCc----ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence              4467899999999999    99973     3332210                                         


Q ss_pred             -------------cccceEEEE---ECCEEEEEcccCC-C----Cc---eeEEEeCCCCCeEecC-CCCCCCCCCceEEE
Q 016368          242 -------------SREAVEAVG---FKGNLCMVNLKGN-G----AK---DGAIYNVELDKWKEMP-EGMHAGWNGPAAST  296 (390)
Q Consensus       242 -------------~r~~~~~~~---~~g~lyv~gg~g~-~----~~---~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~  296 (390)
                                   .+..++++.   .+++||++||... .    ..   .+++||+.+++|+.+. ..++.+|..+++++
T Consensus       384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~  463 (656)
T 1k3i_A          384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV  463 (656)
T ss_dssp             EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred             cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEE
Confidence                         011233332   4899999997521 1    12   5679999999999986 33889998888877


Q ss_pred             ee-CCeEEEEeCCC-----------CcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeC
Q 016368          297 MN-EEELYVVNEGK-----------GRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCEN  350 (390)
Q Consensus       297 ~~-~g~lyv~gg~~-----------~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~  350 (390)
                       + +|+||++||.+           .++++||+++++|+.+..++.+|..|+++++  +|+|||+|+.
T Consensus       464 -l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          464 -LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             -CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             -CCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence             6 99999999953           3789999999999999999999999988887  9999999875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=1.3e-26  Score=234.99  Aligned_cols=234  Identities=10%  Similarity=0.105  Sum_probs=179.1

Q ss_pred             EEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee--cCeEEEEEeecCCCC----CCCCCcEEEeCCCCc
Q 016368          102 FFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIAATTPHFL----PALASPLAFNPQSNT  175 (390)
Q Consensus       102 ~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~----~~~~~~~~~dp~t~~  175 (390)
                      +..||+.+++|..++++|. ...                +++.+  ++.+|++||......    .....+++||+.+++
T Consensus       168 ~~~~dp~~~~W~~~~~~P~-~~~----------------~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~  230 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI-VPA----------------AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI  230 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS-CCS----------------EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC
T ss_pred             cccCCCCCCeeeeeccCCC-Cce----------------eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc
Confidence            5668999999999887776 221                44444  778888888654211    123478999999999


Q ss_pred             eecCCCCCCCCcceE--EEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-
Q 016368          176 WFFGPQLSIPRRWCA--MGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-  251 (390)
Q Consensus       176 W~~~~~~~~~r~~~~--~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-  251 (390)
                      |+.++.++.+|..++  +++ .+++||++||...       .++++||+.+++    |+++++|+.+|.   .++++++ 
T Consensus       231 w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-------~~v~~yd~~t~~----W~~~~~~~~~R~---~~s~~~~~  296 (656)
T 1k3i_A          231 VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDS----WIPGPDMQVARG---YQSSATMS  296 (656)
T ss_dssp             BCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTE----EEECCCCSSCCS---SCEEEECT
T ss_pred             EEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-------CceEEecCcCCc----eeECCCCCcccc---ccceEEec
Confidence            999999988886654  333 4899999999865       279999999999    999999998876   6888888 


Q ss_pred             CCEEEEEcccCC---CCceeEEEeCCCCCeEecCC----CCCCCC-----------------------------------
Q 016368          252 KGNLCMVNLKGN---GAKDGAIYNVELDKWKEMPE----GMHAGW-----------------------------------  289 (390)
Q Consensus       252 ~g~lyv~gg~g~---~~~~~~~yd~~~~~W~~~~~----~~~~~~-----------------------------------  289 (390)
                      +|+||++||...   ...+.++||+.+++|+.++.    .++..+                                   
T Consensus       297 dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence            999999997422   23678999999999998631    021111                                   


Q ss_pred             ---------------------CCceEEE---eeCCeEEEEeCCCC-----------cEEEEECCCCceEEcc--cccccc
Q 016368          290 ---------------------NGPAAST---MNEEELYVVNEGKG-----------RLSKYDADHDWWDEVI--ELAELK  332 (390)
Q Consensus       290 ---------------------~~~~~~~---~~~g~lyv~gg~~~-----------~v~~yd~~~~~W~~i~--~~p~~r  332 (390)
                                           ...+.++   ..+++||++||...           .+++||++++.|.++.  .||..|
T Consensus       377 ~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R  456 (656)
T 1k3i_A          377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR  456 (656)
T ss_dssp             STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC
T ss_pred             CCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc
Confidence                                 0012222   14899999999532           6889999999999986  899999


Q ss_pred             cceeEEEE-CCEEEEEeeCC-----------ceEEEEEcCCCCCcceEe
Q 016368          333 GAEKITAA-RGRVCAVCENG-----------ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       333 ~~~~~~~~-~g~l~i~g~~~-----------~~v~~~d~~~~~~~~W~~  369 (390)
                      ..++++++ +|+|||+|+..           .++.+||+.+.   +|..
T Consensus       457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~---~W~~  502 (656)
T 1k3i_A          457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD---TFYK  502 (656)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT---EEEE
T ss_pred             ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC---ceee
Confidence            98988888 99999998642           47899999887   8984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.17  E-value=1e-08  Score=98.14  Aligned_cols=187  Identities=11%  Similarity=0.081  Sum_probs=104.7

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .++...+.+++.|+..       ..+.+||..+++-...  +........+...++..++.|+.+.        .+.+||
T Consensus       163 ~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg--------~i~~wd  225 (445)
T 2ovr_B          163 WSSQMRDNIIISGSTD-------RTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRDA--------TLRVWD  225 (445)
T ss_dssp             EEEEEETTEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETTS--------EEEEEE
T ss_pred             EEEEecCCEEEEEeCC-------CeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCCC--------EEEEEE
Confidence            4555567777776542       4688999987753221  1111112223333455566666554        788999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      ..+..    -...-.....     ...++..++..++.|+   ....+.+||..+.+-...   +.........+. .++
T Consensus       226 ~~~~~----~~~~~~~~~~-----~v~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~-~~~  289 (445)
T 2ovr_B          226 IETGQ----CLHVLMGHVA-----AVRCVQYDGRRVVSGA---YDFMVKVWDPETETCLHT---LQGHTNRVYSLQ-FDG  289 (445)
T ss_dssp             SSSCC----EEEEEECCSS-----CEEEEEECSSCEEEEE---TTSCEEEEEGGGTEEEEE---ECCCSSCEEEEE-ECS
T ss_pred             CCCCc----EEEEEcCCcc-----cEEEEEECCCEEEEEc---CCCEEEEEECCCCcEeEE---ecCCCCceEEEE-ECC
Confidence            98876    2221111111     1333445777666642   234567888876542211   111111122232 688


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..++.|+.++.+..||..+.+-.  ..+............++..++.|+.++.|.+||+.+.
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGNCI--HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEE--EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCCCCEE--EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence            88899999999999999876532  2222222233334445666677677789999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.14  E-value=8.6e-09  Score=98.55  Aligned_cols=190  Identities=13%  Similarity=0.141  Sum_probs=106.7

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .++..++.+++.|+..       ..+.+||..+++-...  +.............+..++.|+.+.        .+.+||
T Consensus       177 ~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg--------~i~vwd  239 (435)
T 1p22_A          177 LCLQYDERVIITGSSD-------STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR--------SIAVWD  239 (435)
T ss_dssp             EEEECCSSEEEEEETT-------SCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS--------CEEEEE
T ss_pred             EEEEECCCEEEEEcCC-------CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC--------cEEEEe
Confidence            5555667777776542       4688999987754321  1111222233333555666666554        688999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      ..+...   ......+.....   ...++..++...+.|+   ....+.+||..+.+-...-.   ........+. .++
T Consensus       240 ~~~~~~---~~~~~~~~~~~~---~v~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~-~~~  306 (435)
T 1p22_A          240 MASPTD---ITLRRVLVGHRA---AVNVVDFDDKYIVSAS---GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQ-YRD  306 (435)
T ss_dssp             CSSSSC---CEEEEEECCCSS---CEEEEEEETTEEEEEE---TTSEEEEEETTTCCEEEEEE---CCSSCEEEEE-EET
T ss_pred             CCCCCC---ceeeeEecCCCC---cEEEEEeCCCEEEEEe---CCCeEEEEECCcCcEEEEEc---CCCCcEEEEE-eCC
Confidence            987651   211111111111   1333334666555531   23457789988764322111   1111122233 678


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+++.|+.++.+..||..+..-  +..+............++..++.|+.++.|.+||+.+.
T Consensus       307 ~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          307 RLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             TEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCCE--EEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence            8889999999999999987542  22233333334444557888888788889999998543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.10  E-value=1.7e-08  Score=96.99  Aligned_cols=186  Identities=9%  Similarity=0.006  Sum_probs=99.8

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC-CCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG-PQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~-~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      .++.++.|+.       -..+.+||..+++-... .....+.  .++...   ++.+++.|+.+.        .+.+||.
T Consensus       172 ~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~l~s~s~d~--------~i~vwd~  234 (464)
T 3v7d_B          172 HGGILVSGST-------DRTVRVWDIKKGCCTHVFEGHNSTV--RCLDIVEYKNIKYIVTGSRDN--------TLHVWKL  234 (464)
T ss_dssp             STTEEEEEET-------TSCEEEEETTTTEEEEEECCCSSCE--EEEEEEESSSCEEEEEEETTS--------CEEEEEC
T ss_pred             CCCEEEEEeC-------CCCEEEEECCCCcEEEEECCCCCcc--EEEEEecCCCCCEEEEEcCCC--------cEEEeeC
Confidence            3455555543       24688999988754322 1111111  122222   457777777654        6778888


Q ss_pred             CCCccccccEEcc---------------------cCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEe
Q 016368          222 KSDREDWKWEKKA---------------------QLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKE  280 (390)
Q Consensus       222 ~t~~~~~~W~~~~---------------------~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~  280 (390)
                      .+..    -....                     .+.....   ....+..++.+.+.|+   ....+.+||..+.+-..
T Consensus       235 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          235 PKES----SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA---SVRTVSGHGNIVVSGS---YDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             CCCC----CC------CCSSEEESCGGGCTTEEEEECCCSS---CEEEEEEETTEEEEEE---TTSCEEEEETTTTEEEE
T ss_pred             CCCc----ccccccccCCcceEeeccCCCeEEEEEccCccc---eEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEE
Confidence            7654    11100                     0000000   1222234455555532   23457789987664322


Q ss_pred             cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcC
Q 016368          281 MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .-. . .......++...++..++.|+.++.+..||..+.+  .+..+.............+..++.|+.++.+.+||+.
T Consensus       305 ~~~-~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          305 ILS-G-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             EEC-C-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             Eec-C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence            111 1 11111223323578888889889999999998754  3333333334444555567777777778899999998


Q ss_pred             CC
Q 016368          361 AS  362 (390)
Q Consensus       361 ~~  362 (390)
                      +.
T Consensus       381 ~~  382 (464)
T 3v7d_B          381 DY  382 (464)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.80  E-value=2.4e-09  Score=70.14  Aligned_cols=42  Identities=24%  Similarity=0.240  Sum_probs=35.4

Q ss_pred             ccCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCC
Q 016368           30 ILLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFP   71 (390)
Q Consensus        30 ~~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~   71 (390)
                      ....+..||+|++.+||++||   +.++++|||+|+.++.++.|.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            345678999999999999999   889999999999999988754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.63  E-value=2e-05  Score=72.14  Aligned_cols=222  Identities=10%  Similarity=-0.030  Sum_probs=126.9

Q ss_pred             ceeEEEEeCCCCCceeCCCC--CCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368           99 SMEFFCFDPISSTWNPLPAP--PQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW  176 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W  176 (390)
                      ...+.++|+.+++...--..  .. ....           ..+...+...+.+|+...       ..+.+.++|+.+++-
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~-~~lg-----------~~~~~i~~~~~~lyv~~~-------~~~~v~viD~~t~~~   76 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANG-FKLG-----------DVAQSMVIRDGIGWIVVN-------NSHVIFAIDINTFKE   76 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHS-SCCB-----------SCEEEEEEETTEEEEEEG-------GGTEEEEEETTTCCE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcC-cccC-----------ccceEEEEECCEEEEEEc-------CCCEEEEEECcccEE
Confidence            45689999998876542100  00 0000           000033334555666543       235799999998876


Q ss_pred             -ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-ccccceEEEEECC
Q 016368          177 -FFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-FSREAVEAVGFKG  253 (390)
Q Consensus       177 -~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-~~r~~~~~~~~~g  253 (390)
                       ..++....   -..++. -++++|+....+        ..+.++|+.+++    -...-...... .......++..++
T Consensus        77 ~~~i~~~~~---p~~i~~~~~g~lyv~~~~~--------~~v~~iD~~t~~----~~~~i~~g~~~~~~~~p~~i~~~~~  141 (328)
T 3dsm_A           77 VGRITGFTS---PRYIHFLSDEKAYVTQIWD--------YRIFIINPKTYE----ITGYIECPDMDMESGSTEQMVQYGK  141 (328)
T ss_dssp             EEEEECCSS---EEEEEEEETTEEEEEEBSC--------SEEEEEETTTTE----EEEEEECTTCCTTTCBCCCEEEETT
T ss_pred             EEEcCCCCC---CcEEEEeCCCeEEEEECCC--------CeEEEEECCCCe----EEEEEEcCCccccCCCcceEEEECC
Confidence             33432222   233444 578999986432        478999999877    33211112100 0000133445899


Q ss_pred             EEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC----------CcEEEEECCCCce
Q 016368          254 NLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK----------GRLSKYDADHDWW  322 (390)
Q Consensus       254 ~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~----------~~v~~yd~~~~~W  322 (390)
                      ++|+..   .+ ...+.++|+++++....-. .  +.....++...+|++|+.....          +.++++|+++.+.
T Consensus       142 ~lyv~~---~~~~~~v~viD~~t~~~~~~i~-~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          142 YVYVNC---WSYQNRILKIDTETDKVVDELT-I--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             EEEEEE---CTTCCEEEEEETTTTEEEEEEE-C--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             EEEEEc---CCCCCEEEEEECCCCeEEEEEE-c--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            999983   22 4568899999886543222 1  1111233332679999887643          6899999998876


Q ss_pred             EEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC
Q 016368          323 DEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       323 ~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      ...-.++.......++..  ++.+|+...   .++++|+.+..
T Consensus       216 ~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~  255 (328)
T 3dsm_A          216 EKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR  255 (328)
T ss_dssp             EEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred             EEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence            543334333344556665  567777633   89999997653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.57  E-value=1.2e-05  Score=73.72  Aligned_cols=218  Identities=12%  Similarity=-0.014  Sum_probs=123.7

Q ss_pred             eeEEEEeCCCCCc-eeCCCCCCCCCcccccccccccccCCCceEEe-ecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368          100 MEFFCFDPISSTW-NPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLG-VRNNLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus       100 ~~~~~~d~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ..+.++|+.+.+- ..++.... |+                 ..+. .++.+|+....       .+.+.++|+.+++-.
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~-p~-----------------~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTS-PR-----------------YIHFLSDEKAYVTQIW-------DYRIFIINPKTYEIT  118 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSS-EE-----------------EEEEEETTEEEEEEBS-------CSEEEEEETTTTEEE
T ss_pred             CEEEEEECcccEEEEEcCCCCC-Cc-----------------EEEEeCCCeEEEEECC-------CCeEEEEECCCCeEE
Confidence            4688899998776 33432222 22                 3344 34554444312       367999999998754


Q ss_pred             c-CCCCC--C-CCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE-EEC
Q 016368          178 F-GPQLS--I-PRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFK  252 (390)
Q Consensus       178 ~-~~~~~--~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~  252 (390)
                      . ++.-.  . ...-..++..+++||+..-.       ..+.+.++|+.+++    ....-......     ..++ .-+
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------~~~~v~viD~~t~~----~~~~i~~g~~p-----~~i~~~~d  182 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------YQNRILKIDTETDK----VVDELTIGIQP-----TSLVMDKY  182 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEEETTEEEEEECT-------TCCEEEEEETTTTE----EEEEEECSSCB-----CCCEECTT
T ss_pred             EEEEcCCccccCCCcceEEEECCEEEEEcCC-------CCCEEEEEECCCCe----EEEEEEcCCCc-----cceEEcCC
Confidence            2 22111  0 00223444578999998521       12489999999987    44322222111     2222 246


Q ss_pred             CEEEEEcccCCC-------CceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCCceEE
Q 016368          253 GNLCMVNLKGNG-------AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWWDE  324 (390)
Q Consensus       253 g~lyv~gg~g~~-------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W~~  324 (390)
                      |++|+.......       ...+.++|+++.+....-. .+.+.....++... ++.||+..+   .+++||+++.+...
T Consensus       183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV  258 (328)
T ss_dssp             SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS
T ss_pred             CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee
Confidence            899988421100       1467899999887553222 22222223444312 567777765   89999999877543


Q ss_pred             cccccc-cccceeEEEE--CCEEEEEe----eCCceEEEEEcCCC
Q 016368          325 VIELAE-LKGAEKITAA--RGRVCAVC----ENGERIMVVDVLAS  362 (390)
Q Consensus       325 i~~~p~-~r~~~~~~~~--~g~l~i~g----~~~~~v~~~d~~~~  362 (390)
                      ...++. .....++++-  +++||+..    ...+.|.+||+..+
T Consensus       259 ~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~  303 (328)
T 3dsm_A          259 RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK  303 (328)
T ss_dssp             SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred             eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence            222222 2344566663  78999986    45678999999843

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.55  E-value=1.8e-08  Score=89.77  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=39.0

Q ss_pred             cccCCCCCCcHHHHHHHHhcCC---ch-hhHhhhHhHHHhhcCCCCCC
Q 016368           29 TILLLLPGLPNHLADRCLSSLP---PA-LLFSVCHSWRRLLYSPYFPP   72 (390)
Q Consensus        29 ~~~~~~~~LP~dl~~~iL~rLP---l~-~~r~Vck~W~~l~~s~~f~~   72 (390)
                      +....+..||+||+.+||++||   |. ++++|||+|+.|++++.|..
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~   93 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWL   93 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHH
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHH
Confidence            3456788999999999999999   88 99999999999999998754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=6.3e-05  Score=65.23  Aligned_cols=159  Identities=18%  Similarity=0.227  Sum_probs=107.4

Q ss_pred             ceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCce
Q 016368          188 WCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD  267 (390)
Q Consensus       188 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~  267 (390)
                      .++....++.||+..|..+      .+.+.++|++|++    =..--.++...+   +.+++..++++|+..   .....
T Consensus        23 tqGL~~~~~~LyestG~~g------~S~v~~vD~~tgk----v~~~~~l~~~~f---geGi~~~~~~ly~lt---w~~~~   86 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETG------RSSVRKVDLETGR----ILQRAEVPPPYF---GAGIVAWRDRLIQLT---WRNHE   86 (243)
T ss_dssp             EEEEEEETTEEEEEECCTT------SCEEEEEETTTCC----EEEEEECCTTCC---EEEEEEETTEEEEEE---SSSSE
T ss_pred             cccEEEECCEEEEECCCCC------CceEEEEECCCCC----EEEEEeCCCCcc---eeEEEEeCCEEEEEE---eeCCE
Confidence            3467777899999998764      3588999999998    444444554444   466788899999993   23566


Q ss_pred             eEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE-cc--ccccc-ccceeEEEECCE
Q 016368          268 GAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE-VI--ELAEL-KGAEKITAARGR  343 (390)
Q Consensus       268 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~-i~--~~p~~-r~~~~~~~~~g~  343 (390)
                      +.+||+++.+-..  . .+.+..+.+++. -+++||+..| ++.++.+|+++.+-.. +.  ..+.+ ...-.+...+|+
T Consensus        87 v~v~D~~tl~~~~--t-i~~~~~Gwglt~-dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~  161 (243)
T 3mbr_X           87 GFVYDLATLTPRA--R-FRYPGEGWALTS-DDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGE  161 (243)
T ss_dssp             EEEEETTTTEEEE--E-EECSSCCCEEEE-CSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred             EEEEECCcCcEEE--E-EeCCCCceEEee-CCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCE
Confidence            8899998754332  2 222234567775 6778999887 7799999999865322 21  11111 122345667999


Q ss_pred             EEEEeeCCceEEEEEcCCCCCcce
Q 016368          344 VCAVCENGERIMVVDVLASPARAW  367 (390)
Q Consensus       344 l~i~g~~~~~v~~~d~~~~~~~~W  367 (390)
                      ||+-.-..+.|.++|+.+.....|
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEE
Confidence            998755677999999998754334

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.28  E-value=8.2e-05  Score=65.11  Aligned_cols=158  Identities=15%  Similarity=0.141  Sum_probs=103.9

Q ss_pred             eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368          189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG  268 (390)
Q Consensus       189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~  268 (390)
                      .+....++.||+..|..+      ...+.++|++|++    =..--.++...+   +.+++..++++|+..   .....+
T Consensus        46 qGL~~~~~~LyestG~~g------~S~v~~vD~~Tgk----v~~~~~l~~~~F---geGit~~g~~ly~lt---w~~~~v  109 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG------RSSIRKVDIESGK----TLQQIELGKRYF---GEGISDWKDKIVGLT---WKNGLG  109 (262)
T ss_dssp             EEEEEETTEEEEEEEETT------EEEEEEECTTTCC----EEEEEECCTTCC---EEEEEEETTEEEEEE---SSSSEE
T ss_pred             ceEEEECCEEEEECCCCC------CceEEEEECCCCc----EEEEEecCCccc---eeEEEEeCCEEEEEE---eeCCEE
Confidence            455566899999998764      2478899999988    333333444333   356777899999993   235668


Q ss_pred             EEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc---cc-ccceeEEEECCE
Q 016368          269 AIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA---EL-KGAEKITAARGR  343 (390)
Q Consensus       269 ~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p---~~-r~~~~~~~~~g~  343 (390)
                      .+||+++.+-.. ++.    +..+.+++. -++.||+..| ++.++.+|+++.+-..--+..   .+ ..--.+...+|+
T Consensus       110 ~v~D~~t~~~~~ti~~----~~eG~glt~-dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~  183 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNY----DGEGWGLTH-NDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGE  183 (262)
T ss_dssp             EEEETTTCCEEEEEEC----SSCCCCEEE-CSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTE
T ss_pred             EEEECccCcEEEEEEC----CCCceEEec-CCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCE
Confidence            899998765432 332    225556775 6778888876 678999999986533221111   11 111135556999


Q ss_pred             EEEEeeCCceEEEEEcCCCCCcceE
Q 016368          344 VCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       344 l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      ||+-.-..+.|.++|+.+.....|.
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEE
Confidence            9987656779999999987543343

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.00087  Score=58.03  Aligned_cols=195  Identities=9%  Similarity=-0.019  Sum_probs=121.8

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      +....+++.+|.+.+..    -.+.+.++|+.+++-..--+++..-...+++..+++||+....+        +.+++||
T Consensus        24 qGL~~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~--------~~v~v~D   91 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN--------HEGFVYD   91 (243)
T ss_dssp             EEEEEETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEEEE
T ss_pred             ccEEEECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC--------CEEEEEE
Confidence            44455556666665532    23579999999998766445554445567788899999985443        4899999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCC-CCCCCCCc-eEEEe
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEG-MHAGWNGP-AASTM  297 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~-~~~~~~~~-~~~~~  297 (390)
                      ++|.+      .+...+.+..   +.+.+..++++|+.-    +.....++|+++.+-.. +... .+.+.... -+.. 
T Consensus        92 ~~tl~------~~~ti~~~~~---Gwglt~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-  157 (243)
T 3mbr_X           92 LATLT------PRARFRYPGE---GWALTSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-  157 (243)
T ss_dssp             TTTTE------EEEEEECSSC---CCEEEECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-
T ss_pred             CCcCc------EEEEEeCCCC---ceEEeeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-
Confidence            98866      3333333322   455665566788773    45668899999865332 2210 11111111 2333 


Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCc---eEEccccccc-------c--cceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDW---WDEVIELAEL-------K--GAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~---W~~i~~~p~~-------r--~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .+|+||+--..++.|.+.|+++.+   |-.+..+...       .  ..-+++..  ++++||.|..-..++-..+..
T Consensus       158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          158 VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred             eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence            699999777677899999999976   3344433211       1  12345554  689999988777777666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.18  E-value=0.00029  Score=61.64  Aligned_cols=189  Identities=8%  Similarity=-0.033  Sum_probs=113.9

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ..++.+|.+.+...    .+.+.++|+.|++-..--+++..-...+++..+++||+....+        +.+++||++|.
T Consensus        50 ~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~v~D~~t~  117 (262)
T 3nol_A           50 YRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGFVWNIRNL  117 (262)
T ss_dssp             EETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEEEETTTC
T ss_pred             EECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC--------CEEEEEECccC
Confidence            33445555544221    2578899999997655434443334456777899999985543        48999999987


Q ss_pred             ccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCC--Cc-eEEEeeCC
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWN--GP-AASTMNEE  300 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~--~~-~~~~~~~g  300 (390)
                      +      .+...+.+..   +.+.+.-++++|+..    +......+|+++.+-.. ++. -..++.  .. .+.. .+|
T Consensus       118 ~------~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V-~~~g~~~~~lNELe~-~~G  182 (262)
T 3nol_A          118 R------QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITV-TAHGEELPELNELEW-VDG  182 (262)
T ss_dssp             C------EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEEC-EETTEECCCEEEEEE-ETT
T ss_pred             c------EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEe-ccCCccccccceeEE-ECC
Confidence            7      3333332222   345554455677663    45567899999865332 222 111111  11 2344 699


Q ss_pred             eEEEEeCCCCcEEEEECCCCceE---Eccccccc--------ccceeEEEE--CCEEEEEeeCCceEEEEEcC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWD---EVIELAEL--------KGAEKITAA--RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~---~i~~~p~~--------r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~  360 (390)
                      +||+--..++.|.+.|+++.+=.   .+..+...        -...+++..  ++++||.|..-..++-..+.
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            99987767789999999997643   33323211        112455554  68899998776677665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.12  E-value=0.00078  Score=59.38  Aligned_cols=178  Identities=8%  Similarity=-0.127  Sum_probs=110.9

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-Cc
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-RF  241 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~~  241 (390)
                      .+.+.++|+.|++-...-+++..-...+.+..+++||+..-.+        +.+.+||+.|.+      .+..++.+ ..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--------~~v~viD~~t~~------v~~~i~~g~~~  108 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--------NIGFIYDRRTLS------NIKNFTHQMKD  108 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--------SEEEEEETTTTE------EEEEEECCSSS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--------CEEEEEECCCCc------EEEEEECCCCC
Confidence            3689999999997655333333223446677789999986433        489999998765      33333322 22


Q ss_pred             cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCC-CCCCCCCc-eEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEG-MHAGWNGP-AASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~-~~~~~~~~-~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                         +.+.+.-++++|+..    +.....++|+++.+=. .++.. .+.+.... .+.. .+|+||+-...++.+.+.|++
T Consensus       109 ---g~glt~Dg~~l~vs~----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~-~dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          109 ---GWGLATDGKILYGSD----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY-INGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             ---CCEEEECSSSEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTSSEEEEEETT
T ss_pred             ---eEEEEECCCEEEEEC----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE-ECCEEEEecCCCCeEEEEECC
Confidence               344444456788773    4567889999886532 22221 11111111 3333 589999887777899999999


Q ss_pred             CCceEEccccccc------------ccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAEL------------KGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~------------r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+=...-.++..            -...+++..  ++++||.|+....++++|+...
T Consensus       181 tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          181 DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8753222222110            123456655  5689999888889999998765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.08  E-value=0.0014  Score=60.73  Aligned_cols=164  Identities=12%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCC-----C---cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIP-----R---RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK  233 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~-----r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~  233 (390)
                      ..+..+|+.++  .|+.-...+..     +   .....+..++.||+.+.         ...+.++|+.+++.  .|+.-
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~---------~g~l~~~d~~tG~~--~w~~~  266 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY---------NGNLTALDLRSGQI--MWKRE  266 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT---------TSCEEEEETTTCCE--EEEEC
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec---------CcEEEEEECCCCcE--Eeecc
Confidence            46888999877  46543221111     1   12333456888888642         12678999988762  37753


Q ss_pred             ccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368          234 AQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       234 ~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      ..  .      ....+..++.+|+..    ......+||..+++  |+....   ........++ .++.||+.. .++.
T Consensus       267 ~~--~------~~~~~~~~~~l~~~~----~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~-~~~~l~v~~-~~g~  329 (376)
T 3q7m_A          267 LG--S------VNDFIVDGNRIYLVD----QNDRVMALTIDGGVTLWTQSDL---LHRLLTSPVL-YNGNLVVGD-SEGY  329 (376)
T ss_dssp             CC--C------EEEEEEETTEEEEEE----TTCCEEEEETTTCCEEEEECTT---TTSCCCCCEE-ETTEEEEEC-TTSE
T ss_pred             CC--C------CCCceEECCEEEEEc----CCCeEEEEECCCCcEEEeeccc---CCCcccCCEE-ECCEEEEEe-CCCe
Confidence            21  1      244566799999985    33457899998774  876422   1122223343 688888654 4678


Q ss_pred             EEEEECCCCc--eEEcccccccccceeEEEECCEEEEEeeCCceEEEEE
Q 016368          312 LSKYDADHDW--WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVD  358 (390)
Q Consensus       312 v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d  358 (390)
                      ++.||+++.+  |+.-  ++........+..++.||+. ..+..++.||
T Consensus       330 l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~~l~v~-~~~G~l~~~~  375 (376)
T 3q7m_A          330 LHWINVEDGRFVAQQK--VDSSGFQTEPVAADGKLLIQ-AKDGTVYSIT  375 (376)
T ss_dssp             EEEEETTTCCEEEEEE--CCTTCBCSCCEEETTEEEEE-BTTSCEEEEE
T ss_pred             EEEEECCCCcEEEEEe--cCCCcceeCCEEECCEEEEE-eCCCEEEEEe
Confidence            9999998876  5432  21112223355568999987 4455788776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.06  E-value=0.00029  Score=61.73  Aligned_cols=153  Identities=10%  Similarity=-0.035  Sum_probs=102.7

Q ss_pred             eEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCcee
Q 016368          189 CAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDG  268 (390)
Q Consensus       189 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~  268 (390)
                      .+....++.||+..|..+        .+.++|++|++.   =..+  ++...+   +.+++..++++|+..   .....+
T Consensus        58 qGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv---~~~~--l~~~~F---geGit~~g~~Ly~lt---w~~~~v  118 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG--------TLRQLSLESAQP---VWME--RLGNIF---AEGLASDGERLYQLT---WTEGLL  118 (268)
T ss_dssp             EEEEEETTEEEEEETTTT--------EEEECCSSCSSC---SEEE--ECTTCC---EEEEEECSSCEEEEE---SSSCEE
T ss_pred             ceEEEECCEEEEEcCCCC--------EEEEEECCCCcE---EeEE--CCCCcc---eeEEEEeCCEEEEEE---ccCCEE
Confidence            456666899999998865        388999999872   2233  444333   355777899999983   235668


Q ss_pred             EEEeCCCCCeE-ecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccc------cceeEEEEC
Q 016368          269 AIYNVELDKWK-EMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK------GAEKITAAR  341 (390)
Q Consensus       269 ~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r------~~~~~~~~~  341 (390)
                      .+||+++.+-. +++.    +..+.+++. -+++||+..| ++.++.+|+++.+-.  ..++...      ..-.+...+
T Consensus       119 ~V~D~~Tl~~~~ti~~----~~eGwGLt~-Dg~~L~vSdG-s~~l~~iDp~T~~v~--~~I~V~~~g~~v~~lNeLe~~d  190 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY----SGEGWGLCY-WNGKLVRSDG-GTMLTFHEPDGFALV--GAVQVKLRGQPVELINELECAN  190 (268)
T ss_dssp             EEEETTTTEEEEEEEC----SSCCCCEEE-ETTEEEEECS-SSEEEEECTTTCCEE--EEEECEETTEECCCEEEEEEET
T ss_pred             EEEECCcCcEEEEEeC----CCceeEEec-CCCEEEEECC-CCEEEEEcCCCCeEE--EEEEeCCCCcccccccccEEeC
Confidence            89999876433 2332    223456665 6788998886 779999999986533  2222111      112355669


Q ss_pred             CEEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          342 GRVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       342 g~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      |+||+-.-..+.|.++|+.+.....|.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence            999986556779999999987543343

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.03  E-value=0.0014  Score=60.72  Aligned_cols=182  Identities=15%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             CCcEEEeCCCC--ceecCCCCC-------CCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLS-------IPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA  234 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~  234 (390)
                      ..++.||+.++  .|+.-....       ........++.++.||+....         ..+.++|.++++.  .|+.-.
T Consensus        63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~---------g~l~a~d~~tG~~--~W~~~~  131 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK---------AQVYALNTSDGTV--AWQTKV  131 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT---------SEEEEEETTTCCE--EEEEEC
T ss_pred             CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC---------CEEEEEECCCCCE--EEEEeC
Confidence            47889999877  465432111       122234455668899985422         3789999988762  376533


Q ss_pred             cCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCC-CCCceEEEeeCCeEEEEeCCCCc
Q 016368          235 QLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAG-WNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      .-.  ..    ...+..++.+|+..    .......||..+++  |+......... +.....++ .++.+|+ +..++.
T Consensus       132 ~~~--~~----~~p~~~~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~-g~~~g~  199 (376)
T 3q7m_A          132 AGE--AL----SRPVVSDGLVLIHT----SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVV-GGDNGR  199 (376)
T ss_dssp             SSC--CC----SCCEEETTEEEEEC----TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEE-CCTTTE
T ss_pred             CCc--eE----cCCEEECCEEEEEc----CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEE-EcCCCE
Confidence            211  11    22345688888864    33457899988764  88654311111 11223343 5776665 555678


Q ss_pred             EEEEECCCCc--eEEcccccccc--------cceeEEEECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368          312 LSKYDADHDW--WDEVIELAELK--------GAEKITAARGRVCAVCENGERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       312 v~~yd~~~~~--W~~i~~~p~~r--------~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~  370 (390)
                      +..||+++.+  |+.-...+...        .....+..++.||+. ..+..++.+|..+.. ..|...
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~~~g~l~~~d~~tG~-~~w~~~  266 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-AYNGNLTALDLRSGQ-IMWKRE  266 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE-CTTSCEEEEETTTCC-EEEEEC
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-ecCcEEEEEECCCCc-EEeecc
Confidence            9999987654  76543222110        112344557888876 345578888886553 247754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.03  E-value=0.00058  Score=60.23  Aligned_cols=159  Identities=15%  Similarity=0.114  Sum_probs=99.9

Q ss_pred             eEEEEEC-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCce
Q 016368          189 CAMGSVG-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKD  267 (390)
Q Consensus       189 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~  267 (390)
                      ++++..+ +.||+..|...      .+.+.++|+.|++    =...-+++...+   +.+.+..++++|+.   ......
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~----v~~~i~l~~~~f---geGi~~~g~~lyv~---t~~~~~   87 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG------RSSVRQVALQTGK----VENIHKMDDSYF---GEGLTLLNEKLYQV---VWLKNI   87 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT------TCEEEEEETTTCC----EEEEEECCTTCC---EEEEEEETTEEEEE---ETTCSE
T ss_pred             ccEEEeCCCeEEEECCCCC------CCEEEEEECCCCC----EEEEEecCCCcc---eEEEEEeCCEEEEE---EecCCE
Confidence            4555555 89999887532      2589999999988    333222333323   35667778899999   334567


Q ss_pred             eEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE-Ecc--ccccc-ccceeEEEECC
Q 016368          268 GAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD-EVI--ELAEL-KGAEKITAARG  342 (390)
Q Consensus       268 ~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~-~i~--~~p~~-r~~~~~~~~~g  342 (390)
                      +.+||+++.+= .+++..+   ..+.+++. -++++|+..| ++.+.++|+++.+=. .+.  ..+.+ .....+...+|
T Consensus        88 v~viD~~t~~v~~~i~~g~---~~g~glt~-Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg  162 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQM---KDGWGLAT-DGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING  162 (266)
T ss_dssp             EEEEETTTTEEEEEEECCS---SSCCEEEE-CSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred             EEEEECCCCcEEEEEECCC---CCeEEEEE-CCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence            88999986532 2232211   23445554 5677888775 779999999886532 222  11111 12234555589


Q ss_pred             EEEEEeeCCceEEEEEcCCCCCcceE
Q 016368          343 RVCAVCENGERIMVVDVLASPARAWL  368 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~~~~~W~  368 (390)
                      +||+-....+.|.++|+.+.....|.
T Consensus       163 ~lyvn~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred             EEEEecCCCCeEEEEECCCCcEEEEE
Confidence            99987666789999999987543343

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.93  E-value=0.0019  Score=56.38  Aligned_cols=176  Identities=13%  Similarity=0.025  Sum_probs=100.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      +.+.+||+.++....+..... ..-.+++.. +++||+.....        ..+.+||..+..    .......... . 
T Consensus        87 ~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~----~~~~~~~~~~-~-  151 (270)
T 1rwi_B           87 NRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRGN--------NRVVKLAAGSKT----QTVLPFTGLN-D-  151 (270)
T ss_dssp             TEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGGG--------TEEEEECTTCCS----CEECCCCSCC-S-
T ss_pred             CEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECCC--------CEEEEEECCCce----eEeeccccCC-C-
Confidence            478899998776544432111 112233333 67899875432        367888877665    4333221111 1 


Q ss_pred             ccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        ..+++.. +|++|+..   .+...+.+||+.+..-..... ... .....++...+|.||+....++.+.+||+.+..
T Consensus       152 --p~~i~~~~~g~l~v~~---~~~~~i~~~~~~~~~~~~~~~-~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          152 --PDGVAVDNSGNVYVTD---TDNNRVVKLEAESNNQVVLPF-TDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             --CCCEEECTTCCEEEEE---GGGTEEEEECTTTCCEEECCC-SSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             --ceeEEEeCCCCEEEEE---CCCCEEEEEecCCCceEeecc-cCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence              1334433 68899873   123457789988765443322 111 111234432467999988777899999998654


Q ss_pred             eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      -..... .......+++.. +|.||+....++.|.+++...+
T Consensus       225 ~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          225 STVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CEECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ceeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            333221 111233455554 6789998777779999987765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.92  E-value=0.0042  Score=54.83  Aligned_cols=172  Identities=8%  Similarity=-0.040  Sum_probs=96.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+++||+. ++.+..........-.+++.. +++||+.....        ..+.+||+ ++.    ............ 
T Consensus        78 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~d~-~g~----~~~~~~~~~~~~-  142 (299)
T 2z2n_A           78 NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG--------NRIGRITD-DGK----IREYELPNKGSY-  142 (299)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECT-TCC----EEEEECSSTTCC-
T ss_pred             CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCC--------ceEEEECC-CCC----EEEecCCCCCCC-
Confidence            468889986 444433211111122333333 57888875432        36888998 555    444322111111 


Q ss_pred             ccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        ..+++.. +|++|+..   .....+.+||+ +++...... .........++...+|.||+.....+.+.+||+ +..
T Consensus       143 --~~~i~~~~~g~l~v~~---~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          143 --PSFITLGSDNALWFTE---NQNNAIGRITE-SGDITEFKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             --EEEEEECTTSCEEEEE---TTTTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             --CceEEEcCCCCEEEEe---CCCCEEEEEcC-CCcEEEeeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence              2334433 67899873   12356778998 777665422 111111123343246889988876779999999 677


Q ss_pred             eEEccccc-ccccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          322 WDEVIELA-ELKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       322 W~~i~~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      ...+. ++ ......+++.. +|.||+.....+.+..+|+
T Consensus       215 ~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          215 ITEFK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEEEE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            66542 22 12233445444 6788887545678999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.92  E-value=0.0091  Score=54.06  Aligned_cols=219  Identities=9%  Similarity=-0.002  Sum_probs=114.0

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ...++++|+.+++....-+....+. .               ..+.-+++.+++.+.      ..+.+.+||+.+++-..
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~-~---------------~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~  125 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPF-G---------------ATINNTTQTLWFGNT------VNSAVTAIDAKTGEVKG  125 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCC-S---------------EEEETTTTEEEEEET------TTTEEEEEETTTCCEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcc-e---------------EEECCCCCEEEEEec------CCCEEEEEeCCCCeeEE
Confidence            3468899998876543222222111 0               223334454444432      22479999999886532


Q ss_pred             CCCCCC--------CCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE-EcccCCCCCccccceE
Q 016368          179 GPQLSI--------PRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE-KKAQLKDGRFSREAVE  247 (390)
Q Consensus       179 ~~~~~~--------~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~-~~~~~~~~~~~r~~~~  247 (390)
                      .-+...        +..-.+++..  ++.+|+.+....       ..+.+||+.+.+    -. .++......     ..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-------~~i~~~d~~~~~----~~~~~~~~~~~~-----~~  189 (353)
T 3vgz_A          126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-------SVIWVVDGGNIK----LKTAIQNTGKMS-----TG  189 (353)
T ss_dssp             EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-------CEEEEEETTTTE----EEEEECCCCTTC-----CC
T ss_pred             EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-------ceEEEEcCCCCc----eEEEecCCCCcc-----ce
Confidence            211111        1112233333  456777763322       378999998776    22 222111111     22


Q ss_pred             EEE-ECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCC-CCCC-ceEEEeeCC-eEEEEeCCCCcEEEEECCCCce
Q 016368          248 AVG-FKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHA-GWNG-PAASTMNEE-ELYVVNEGKGRLSKYDADHDWW  322 (390)
Q Consensus       248 ~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~-~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W  322 (390)
                      ++. -+| .+|+..    ....+.+||+.+.+-......... +... ..++...+| .+|+....++.+.+||..+.+.
T Consensus       190 ~~~s~dg~~l~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTN----ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEEC----TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEc----CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            222 244 577663    234677899987753322110111 1111 123332344 5777776668999999988765


Q ss_pred             EEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          323 DEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       323 ~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ......+.+   ..+...  ++.+|+....++.+.++|+.+.
T Consensus       266 ~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          266 LAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            443333332   233333  4458887666779999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.88  E-value=0.0018  Score=56.73  Aligned_cols=189  Identities=10%  Similarity=-0.025  Sum_probs=113.5

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      +.....++.+|++.+..      ..+.++|+.|++-..-- ++..-...+++..+++||+....+        +.+++||
T Consensus        58 qGL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~--------~~v~V~D  122 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE--------GLLFTWS  122 (268)
T ss_dssp             EEEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS--------CEEEEEE
T ss_pred             ceEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC--------CEEEEEE
Confidence            34445566666655422      23889999998764422 443333455777789999985443        4899999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCC-CCCCCCC-ceEEEe
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEG-MHAGWNG-PAASTM  297 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~-~~~~~~~-~~~~~~  297 (390)
                      ++|.+      .+...+....   +.+.+.-++++|+..    +......+|+++.+-.. +... .+.+... -.+.. 
T Consensus       123 ~~Tl~------~~~ti~~~~e---GwGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-  188 (268)
T 3nok_A          123 GMPPQ------RERTTRYSGE---GWGLCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-  188 (268)
T ss_dssp             TTTTE------EEEEEECSSC---CCCEEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-
T ss_pred             CCcCc------EEEEEeCCCc---eeEEecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-
Confidence            99876      3333332222   355666677888873    45668899999865332 2220 1111111 12333 


Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCce---EEcccccc------c-c--cceeEEEE--CCEEEEEeeCCceEEEEE
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWW---DEVIELAE------L-K--GAEKITAA--RGRVCAVCENGERIMVVD  358 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W---~~i~~~p~------~-r--~~~~~~~~--~g~l~i~g~~~~~v~~~d  358 (390)
                      .+|+||+--..++.|.+.|+++.+=   -.+..+..      . .  ..-+++..  ++++||.|..-..++-..
T Consensus       189 ~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          189 ANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             ETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             eCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            6899997766677999999999763   33332211      0 1  12345554  678999887766665544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.88  E-value=0.0014  Score=62.00  Aligned_cols=190  Identities=10%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .++..++..++.|+..       +.+.+||..+.+-...  +........+...++.+++.|+.++        .+.+||
T Consensus       137 ~~~~~d~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg--------~i~vwd  199 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS--------TVRVWD  199 (435)
T ss_dssp             EEEECCSSEEEEEESS-------SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS--------CEEEEE
T ss_pred             EEEEECCCEEEEEeCC-------CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC--------eEEEEE
Confidence            5566677777776542       4688999887654322  1111222233344777788887765        788999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      ..++.    -...-.....     ....+.+++..++.|+   ....+.+||..+..-..... ...+......++..++
T Consensus       200 ~~~~~----~~~~~~~h~~-----~v~~l~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~  266 (435)
T 1p22_A          200 VNTGE----MLNTLIHHCE-----AVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDFDD  266 (435)
T ss_dssp             SSSCC----EEEEECCCCS-----CEEEEECCTTEEEEEE---TTSCEEEEECSSSSCCEEEE-EECCCSSCEEEEEEET
T ss_pred             CCCCc----EEEEEcCCCC-----cEEEEEEcCCEEEEee---CCCcEEEEeCCCCCCceeee-EecCCCCcEEEEEeCC
Confidence            98876    3222111111     1333334555555532   23457789987654221111 1111122222222688


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..++.|+.++.+..||..+.+-  +..+........+...++.+++.|+.++.|.+||+.+.
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence            8888898899999999987643  33333333334444556777777788889999999865

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.84  E-value=0.0058  Score=53.95  Aligned_cols=173  Identities=11%  Similarity=-0.002  Sum_probs=96.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      +.+.+||+. +++...........-++++.. +++||+.....        ..+.+||+. +.    ..... ++.... 
T Consensus        83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~-g~----~~~~~-~~~~~~-  146 (300)
T 2qc5_A           83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--------DRIGKLTAD-GT----IYEYD-LPNKGS-  146 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--------TEEEEECTT-SC----EEEEE-CSSTTC-
T ss_pred             CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC--------CeEEEECCC-CC----EEEcc-CCCCCC-
Confidence            468899988 666543211111222333333 67888875322        368889987 55    44332 121111 


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEeeCCeEEEEeCCCCcEEEEECCCC
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AASTMNEEELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~g~lyv~gg~~~~v~~yd~~~~  320 (390)
                       ....++. -+|++|+..   .+...+.+||+ +++......  +.....+ .++...+|.||+.....+.+.+||+ +.
T Consensus       147 -~~~~i~~d~~g~l~v~~---~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  218 (300)
T 2qc5_A          147 -YPAFITLGSDNALWFTE---NQNNSIGRITN-TGKLEEYPL--PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG  218 (300)
T ss_dssp             -CEEEEEECTTSSEEEEE---TTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             -CceeEEECCCCCEEEEe---cCCCeEEEECC-CCcEEEeeC--CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence             0233443 367888873   12456788998 666665432  1111222 3333236899988766678999999 55


Q ss_pred             ceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368          321 WWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       321 ~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .+.............+++.- +|.||+.....+.+..+|+.
T Consensus       219 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          219 EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            66554311112223445444 67888875556788888873

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.82  E-value=0.00052  Score=63.69  Aligned_cols=172  Identities=13%  Similarity=0.108  Sum_probs=93.9

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++....-....  .-.+++..  +..||+.+..+        ..+.+||+.+++    -...-.....  
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~----~~~~~~~~~~--  117 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT----VAGTVKTGKS--  117 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE----EEEEEECSSS--
T ss_pred             CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCC--------CEEEEEECCCCe----EEEEEeCCCC--
Confidence            478999998886544322222  22223332  34566665433        378999999887    4332222211  


Q ss_pred             cccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEECC
Q 016368          242 SREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       242 ~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~  318 (390)
                         ..+++.. ++ .+|+.+   .....+.+||+.+.+....-. .  ......++...++ .||+.+..++.+..||..
T Consensus       118 ---~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~-~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~  188 (391)
T 1l0q_A          118 ---PLGLALSPDGKKLYVTN---NGDKTVSVINTVTKAVINTVS-V--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (391)
T ss_dssp             ---EEEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEE-C--CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---cceEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEEEe-c--CCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence               1333332 44 466663   124567899998876544322 1  1111233332344 566777778899999998


Q ss_pred             CCceEEcccccccccceeEEEE-CC-EEEEEee--CCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAA-RG-RVCAVCE--NGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~--~~~~v~~~d~~~~  362 (390)
                      +.+.....  +.......++.. +| .|++.+.  .+..+.+||+.+.
T Consensus       189 ~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          189 TNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             TTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            76544332  222222333333 44 4555543  5678999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.80  E-value=0.0051  Score=54.31  Aligned_cols=178  Identities=11%  Similarity=0.029  Sum_probs=96.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+||+.......+..... ..-.++++. +++||+.....        ..+.+||+....    ...+........ 
T Consensus       100 ~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~~----~~~~~~~~~~~~-  165 (286)
T 1q7f_A          100 HQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGNV----LHKFGCSKHLEF-  165 (286)
T ss_dssp             CEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETTT--------TEEEEECTTSCE----EEEEECTTTCSS-
T ss_pred             CEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEECCC--------CEEEEEcCCCCE----EEEeCCCCccCC-
Confidence            468889965443333321111 111233332 67888875432        378899976654    333322111111 


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECCCC
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~  320 (390)
                        ..++++ -+|++|+..   .....+.+||+..+....+.. .........+++..+|.||+....++ .+.+||++..
T Consensus       166 --p~~i~~~~~g~l~v~~---~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          166 --PNGVVVNDKQEIFISD---NRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             --EEEEEECSSSEEEEEE---GGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             --cEEEEECCCCCEEEEE---CCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence              133333 368899873   124567899986654444432 11001112344334789999987775 9999998755


Q ss_pred             ceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          321 WWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       321 ~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .-..+..-.......+++.. +|+||+. ..++.|.+|+....
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            43333321111123345544 7889888 45678999987654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.77  E-value=0.0042  Score=54.15  Aligned_cols=175  Identities=11%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      +.+.+||+.+........... ..-.+++.. +++||+... .        ..+.+||+.+..    ...+...... . 
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~--------~~i~~~d~~~~~----~~~~~~~~~~-~-  109 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N--------NRVVTLAAGSNN----QTVLPFDGLN-Y-  109 (270)
T ss_dssp             CEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T--------TEEEEECTTCSC----CEECCCCSCS-S-
T ss_pred             CcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C--------CEEEEEeCCCce----EeeeecCCcC-C-
Confidence            578889987766544332111 111233443 577888764 2        378899998876    4444321111 1 


Q ss_pred             ccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        ..++++. +|++|+...   +...+.+||..+........ ... .....++...+|+||+.....+.+.+||..+..
T Consensus       110 --p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~~~~~~~~~-~~~-~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          110 --PEGLAVDTQGAVYVADR---GNNRVVKLAAGSKTQTVLPF-TGL-NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             --EEEEEECTTCCEEEEEG---GGTEEEEECTTCCSCEECCC-CSC-CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             --CcceEECCCCCEEEEEC---CCCEEEEEECCCceeEeecc-ccC-CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence              1344443 778998731   23456788776665443322 111 112234432468999988777799999998765


Q ss_pred             eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      -..... .......+++.. +|.||+....++.|.++|..+.
T Consensus       183 ~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          183 QVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             eEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            443321 111233455554 5689988666778999998664

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.76  E-value=0.011  Score=51.95  Aligned_cols=174  Identities=7%  Similarity=-0.044  Sum_probs=95.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..++++|+ +++............-.+++.. ++++|+....        ...+.+||+ ++.    ...... +.... 
T Consensus       120 ~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~-~g~----~~~~~~-~~~~~-  183 (299)
T 2z2n_A          120 NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ--------NNAIGRITE-SGD----ITEFKI-PTPAS-  183 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--------TTEEEEECT-TCC----EEEEEC-SSTTC-
T ss_pred             ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--------CCEEEEEcC-CCc----EEEeeC-CCCCC-
Confidence            46889998 6655543211111122233333 5788886422        237889999 666    554321 11111 


Q ss_pred             ccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEeeCCeEEEEeCCCCcEEEEECCCC
Q 016368          243 REAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AASTMNEEELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~g~lyv~gg~~~~v~~yd~~~~  320 (390)
                       ...+++.. +|++|+..   .....+.+||+ +++......  +.....+ .++...+|.||+.....+.+.+||+. .
T Consensus       184 -~~~~i~~~~~g~l~v~~---~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g  255 (299)
T 2z2n_A          184 -GPVGITKGNDDALWFVE---IIGNKIGRITT-SGEITEFKI--PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N  255 (299)
T ss_dssp             -CEEEEEECTTSSEEEEE---TTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T
T ss_pred             -cceeEEECCCCCEEEEc---cCCceEEEECC-CCcEEEEEC--CCCCCCceeEEECCCCCEEEeccCCceEEEECCC-C
Confidence             01334433 57888873   12456788999 777765432  1111222 33332468899887667799999994 4


Q ss_pred             ceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          321 WWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       321 ~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....+..........+++..+|.||+... .+.+..+|+.+.
T Consensus       256 ~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          256 IIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             ceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            44443211111223444446778888743 568999998765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.76  E-value=0.0048  Score=57.90  Aligned_cols=175  Identities=11%  Similarity=0.041  Sum_probs=95.4

Q ss_pred             CCcEEEeCCCCceecCCCCC---CCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLS---IPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      ..+.+||+.+++.....+..   ..........+  ++++++.++.+.        .+.+||..+.+    -...-....
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~--------~v~~~d~~~~~----~~~~~~~~~  211 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN--------AVHVFDLKTLA----YKATVDLTG  211 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT--------EEEEEETTTCC----EEEEEECSS
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC--------EEEEEECCCce----EEEEEcCCC
Confidence            46999999988766533221   11222222333  678888877553        78999998866    222111111


Q ss_pred             CCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC--------C
Q 016368          239 GRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE--------G  308 (390)
Q Consensus       239 ~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg--------~  308 (390)
                      . .   ..+++.. ++ .+|+.+.   ....+.+||+.+.+....-.   .......++...+|+.+++++        .
T Consensus       212 ~-~---~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          212 K-W---SKILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             S-S---EEEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             C-C---eeEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence            1 1   1333333 33 4666631   23467899998776543322   111112233223565555544        3


Q ss_pred             CCcEEEEECCCCceEEcccccccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368          309 KGRLSKYDADHDWWDEVIELAELKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       309 ~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.+.+||..+.+-.....  .......++.. ++ .+|+.+..++.+.+||+.+.
T Consensus       282 dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             CEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            5689999998765433321  11122233333 34 68888777789999998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.65  E-value=0.00087  Score=62.14  Aligned_cols=172  Identities=13%  Similarity=0.084  Sum_probs=96.8

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.+||..+++-...-...  ..-.+++.. ++ .||+.++.+.        .+.+||..+++    -...-....  .
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~--------~i~v~d~~~~~----~~~~~~~~~--~   75 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSN--------DVSIIDTATNN----VIATVPAGS--S   75 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTE----EEEEEECSS--S
T ss_pred             CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCCC--------eEEEEECCCCe----EEEEEECCC--C
Confidence            57889999887654321111  112233332 34 5777765543        78999998877    433222222  1


Q ss_pred             cccceEEEEE-CCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEECC
Q 016368          242 SREAVEAVGF-KGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       242 ~r~~~~~~~~-~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~  318 (390)
                         ..+++.. +++ +|+.+   .....+.+||+.+++-...-.   .......++...+| .||+.++.++.+..||..
T Consensus        76 ---v~~~~~spdg~~l~~~~---~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           76 ---PQGVAVSPDGKQVYVTN---MASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             ---EEEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---ccceEECCCCCEEEEEE---CCCCEEEEEECCCCeEEEEEe---CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence               1333332 444 66653   123568899998876443222   11111233332345 477788778899999998


Q ss_pred             CCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+......  .......++..  +..|++.+..++.+.+||+.+.
T Consensus       147 ~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          147 TKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             TTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            876544322  22222334443  3457677666778999998775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.64  E-value=0.015  Score=51.16  Aligned_cols=180  Identities=7%  Similarity=0.003  Sum_probs=98.9

Q ss_pred             CCcEEEeCCCCceecCCCCC---CC-CcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLS---IP-RRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~---~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ..+.+||+.......++...   .. ..-.++++.  ++.||+.+...       ...+.+||.....    -+.+....
T Consensus        51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-------~~~i~~~d~~g~~----~~~~~~~~  119 (286)
T 1q7f_A           51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYNQYGQF----VRKFGATI  119 (286)
T ss_dssp             TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEECTTSCE----EEEECTTT
T ss_pred             CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-------CCEEEEECCCCcE----EEEecCcc
Confidence            46889998755443333211   11 122344442  68899886431       2378899955443    33332211


Q ss_pred             CCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          238 DGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       238 ~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      .. .   ..++++ -+|++|+..   .....+.+||+.......... .........+++..+|+||+.+..++.+.+||
T Consensus       120 ~~-~---~~~i~~~~~g~l~v~~---~~~~~i~~~~~~g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  191 (286)
T 1q7f_A          120 LQ-H---PRGVTVDNKGRIIVVE---CKVMRVIIFDQNGNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  191 (286)
T ss_dssp             CS-C---EEEEEECTTSCEEEEE---TTTTEEEEECTTSCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             CC-C---ceEEEEeCCCCEEEEE---CCCCEEEEEcCCCCEEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEc
Confidence            11 1   133443 367899873   123567789976554444322 11111112344334689999887778999999


Q ss_pred             CCCCceEEcccccccccceeEEEE-CCEEEEEeeCCc-eEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGE-RIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~-~v~~~d~~~~  362 (390)
                      +.......+..........+++.. +|.||+....++ .|.+||....
T Consensus       192 ~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          192 YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             TTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             CCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence            876544444321111233445554 678998865555 8999996543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.62  E-value=0.009  Score=52.68  Aligned_cols=172  Identities=9%  Similarity=0.016  Sum_probs=96.8

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      +.+.+||+. ++............-++++.. ++.||+.....        ..+.+||+. +.    .+.......... 
T Consensus        41 ~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~v~~~d~~-g~----~~~~~~~~~~~~-  105 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA--------NKIGKLSKK-GG----FTEYPLPQPDSG-  105 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECTT-SC----EEEEECSSTTCC-
T ss_pred             CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC--------CeEEEECCC-CC----eEEecCCCCCCC-
Confidence            578899988 666553211111122233332 57888865322        368899988 66    554332111111 


Q ss_pred             ccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        ..+++.. +|++|+..   .....+..||+. ++...... .........++...+|+||+.....+.+++||+ +.+
T Consensus       106 --~~~i~~~~~g~l~v~~---~~~~~i~~~~~~-g~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~  177 (300)
T 2qc5_A          106 --PYGITEGLNGDIWFTQ---LNGDRIGKLTAD-GTIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK  177 (300)
T ss_dssp             --EEEEEECSTTCEEEEE---TTTTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             --CccceECCCCCEEEEc---cCCCeEEEECCC-CCEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc
Confidence              2444443 68899873   123457789987 66554322 111111223333246889988766778999999 566


Q ss_pred             eEEcccccc-cccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          322 WDEVIELAE-LKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       322 W~~i~~~p~-~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      ...+. ++. .....+++.. +|.||+....++.+.++|.
T Consensus       178 ~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          178 LEEYP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEEE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEEee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            66543 221 2223344444 6788887555667888887

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.56  E-value=0.052  Score=50.49  Aligned_cols=174  Identities=11%  Similarity=0.030  Sum_probs=103.7

Q ss_pred             CCCcEEEeCCCCceecCCC--CCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          163 LASPLAFNPQSNTWFFGPQ--LSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~--~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      .+.++++++.....+.+..  +..|   .++++.  ++.||+.-..        ...++++++....    -+.+..-..
T Consensus       137 ~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~--------~~~I~~~~~dg~~----~~~l~~~~l  201 (386)
T 3v65_B          137 LDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG--------TSRIEVANLDGAH----RKVLLWQSL  201 (386)
T ss_dssp             TTEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT--------TTEEEECBTTSCS----CEEEECSSC
T ss_pred             CCcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC--------CCeEEEEeCCCCc----eEEeecCCC
Confidence            3578999998776544321  2222   233443  7899997432        3478888887654    333322111


Q ss_pred             CCccccceEEEEE--CCEEEEEcccCCCC-ceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEe-eCCeEEEEeCCCCcEE
Q 016368          239 GRFSREAVEAVGF--KGNLCMVNLKGNGA-KDGAIYNVELDKWKEMPEGMHAGWNGP-AASTM-NEEELYVVNEGKGRLS  313 (390)
Q Consensus       239 ~~~~r~~~~~~~~--~g~lyv~gg~g~~~-~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~g~lyv~gg~~~~v~  313 (390)
                      ..    ..++++.  ++.||+..   .+. ..++++++....-+.+..   .....+ ++++. .+++||+.....+.|+
T Consensus       202 ~~----P~giavdp~~g~ly~td---~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          202 EK----PRAIALHPMEGTIYWTD---WGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             SC----EEEEEEETTTTEEEEEE---CSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CC----CcEEEEEcCCCeEEEec---cCCCCEEEEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            11    1344544  78999983   233 568889887554333322   111112 34432 4789999998888999


Q ss_pred             EEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          314 KYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++|.....=..+... ......++++.++.||+.-..+..|..+|..+.
T Consensus       272 ~~d~dG~~~~~~~~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          272 RANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EECTTSCSCEEEECS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCeeEEEEEC-CCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            999875433333221 123456788889999998666778999995443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.55  E-value=0.0036  Score=56.39  Aligned_cols=221  Identities=9%  Similarity=0.016  Sum_probs=112.8

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCce-e-
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTW-F-  177 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W-~-  177 (390)
                      ..+.++|+.+++....-..+. ....               .+..-++..+++.+.      ..+.+++||+.+++. . 
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~-~~~~---------------~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGY-DFVD---------------TAITSDCSNVVVTSD------FCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-CEEE---------------EEECSSSCEEEEEES------TTCEEEEEECSSSSCEEE
T ss_pred             CeEEEEeCcccceeeeEEccC-Ccce---------------EEEcCCCCEEEEEeC------CCCeEEEEECCCCceeEE
Confidence            468889999887755433322 1100               222234554444432      224899999988864 2 


Q ss_pred             cCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCE
Q 016368          178 FGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGN  254 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~  254 (390)
                      .+.....+.  ++++..  +..|| .+....     ....+.+||..++.    -...-....  .   ...++. -+|+
T Consensus        78 ~~~~~~~~~--~~~~~s~dg~~l~-~~~~~~-----~~~~i~v~d~~~~~----~~~~~~~~~--~---~~~~~~spdg~  140 (331)
T 3u4y_A           78 AIQEGQSSM--ADVDITPDDQFAV-TVTGLN-----HPFNMQSYSFLKNK----FISTIPIPY--D---AVGIAISPNGN  140 (331)
T ss_dssp             EEEECSSCC--CCEEECTTSSEEE-ECCCSS-----SSCEEEEEETTTTE----EEEEEECCT--T---EEEEEECTTSS
T ss_pred             ecccCCCCc--cceEECCCCCEEE-EecCCC-----CcccEEEEECCCCC----eEEEEECCC--C---ccceEECCCCC
Confidence            222111222  212332  34566 332211     12389999998877    433222211  1   133333 2554


Q ss_pred             -EEEEcccCCCCce-eEEEeCCCCC-eEec-CCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEECCCCce-EEcccc
Q 016368          255 -LCMVNLKGNGAKD-GAIYNVELDK-WKEM-PEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYDADHDWW-DEVIEL  328 (390)
Q Consensus       255 -lyv~gg~g~~~~~-~~~yd~~~~~-W~~~-~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~~W-~~i~~~  328 (390)
                       +|+.+.   +... +.+|+...+. -... ....+.......++...+|+ +|+.+..++.+.+||.++.+. +.+..+
T Consensus       141 ~l~~~~~---~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~  217 (331)
T 3u4y_A          141 GLILIDR---SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV  217 (331)
T ss_dssp             CEEEEEE---TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             EEEEEec---CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec
Confidence             777631   2234 6677765432 1111 00011111112333324665 888877778999999987765 223334


Q ss_pred             cccccceeEEEE-CCE-EEEEeeCCceEEEEEcCCC
Q 016368          329 AELKGAEKITAA-RGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       329 p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.......++.. +|+ ||+.....+.+.++|+.+.
T Consensus       218 ~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          218 GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            433333445544 555 7776555667999998765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.49  E-value=0.014  Score=55.14  Aligned_cols=284  Identities=11%  Similarity=0.042  Sum_probs=146.4

Q ss_pred             cCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCCCcccEEEEeecC--CCCCCCCCC-cccCCCceeE-E
Q 016368           31 LLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFPPFFSLYALLFNN--NKPSHNNNN-YYSFNSSMEF-F  103 (390)
Q Consensus        31 ~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~  103 (390)
                      ...+..||+|++..||++|+   +.++.+|||+|+.++.++.+...    .+....  +........ .........+ .
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~   91 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE----KCKEEGIDEPLHIKRRKVIKPGFIHSPWKS   91 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH----HHTTTTCCSCCCCCC--CCSSCCCCCHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhh----heeecccccccccccceecCCCccCCcHHH
Confidence            35578899999999999999   89999999999999988753320    000000  000000000 0000000000 0


Q ss_pred             EE---eCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCC
Q 016368          104 CF---DPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGP  180 (390)
Q Consensus       104 ~~---d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~  180 (390)
                      .|   ......|..-...+. ..   ...|...     -..++..++..++.|+.       -..+.+||..+++-... 
T Consensus        92 ~~~~~~~~~~~w~~~~~~~~-~~---l~~h~~~-----v~~~~~~~g~~l~sg~~-------dg~i~vwd~~~~~~~~~-  154 (445)
T 2ovr_B           92 AYIRQHRIDTNWRRGELKSP-KV---LKGHDDH-----VITCLQFCGNRIVSGSD-------DNTLKVWSAVTGKCLRT-  154 (445)
T ss_dssp             HHHHHHHHHHHHHHSCCCCC-EE---EECSTTS-----CEEEEEEETTEEEEEET-------TSCEEEEETTTCCEEEE-
T ss_pred             HHhhhhhhhhcccCCCccee-EE---ecccCCC-----cEEEEEEcCCEEEEEEC-------CCcEEEEECCCCcEEEE-
Confidence            00   000011222111111 00   0111110     01455667777777654       24688999887754321 


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcc
Q 016368          181 QLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNL  260 (390)
Q Consensus       181 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg  260 (390)
                       +......-.+....+.+++.|+.+.        .+.+||..++.    -...-.....     ...++..++..++.|+
T Consensus       155 -~~~h~~~v~~~~~~~~~l~s~~~dg--------~i~vwd~~~~~----~~~~~~~h~~-----~v~~~~~~~~~l~s~s  216 (445)
T 2ovr_B          155 -LVGHTGGVWSSQMRDNIIISGSTDR--------TLKVWNAETGE----CIHTLYGHTS-----TVRCMHLHEKRVVSGS  216 (445)
T ss_dssp             -CCCCSSCEEEEEEETTEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-----CEEEEEEETTEEEEEE
T ss_pred             -EcCCCCCEEEEEecCCEEEEEeCCC--------eEEEEECCcCc----EEEEECCCCC-----cEEEEEecCCEEEEEe
Confidence             1111112222333455666666654        78899998876    2221111111     1223333444444431


Q ss_pred             cCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE
Q 016368          261 KGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA  340 (390)
Q Consensus       261 ~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~  340 (390)
                         ....+.+||..+.+-...-.   ........+. .++..++.|+.++.+..||..+.+  .+..+............
T Consensus       217 ---~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~-~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          217 ---RDATLRVWDIETGQCLHVLM---GHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             ---TTSEEEEEESSSCCEEEEEE---CCSSCEEEEE-ECSSCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE
T ss_pred             ---CCCEEEEEECCCCcEEEEEc---CCcccEEEEE-ECCCEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE
Confidence               33457789988765322111   1111122233 688889999999999999987653  33333333333344444


Q ss_pred             CCEEEEEeeCCceEEEEEcCCC
Q 016368          341 RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 ~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++..++.|+.++.+.+||+.+.
T Consensus       288 ~~~~l~~~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          288 DGIHVVSGSLDTSIRVWDVETG  309 (445)
T ss_dssp             CSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCC
Confidence            7777777787889999998775

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.48  E-value=0.023  Score=53.47  Aligned_cols=211  Identities=11%  Similarity=0.001  Sum_probs=111.0

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCE-EEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGV-VYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++..+++++...    ....++++|..+++...+.....  ...+.+.. +++ |++.+..+.      ...+++||..+
T Consensus       189 dg~~la~~s~~~----~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~  256 (415)
T 2hqs_A          189 DGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLAS  256 (415)
T ss_dssp             TSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS------SCEEEEEETTT
T ss_pred             CCCEEEEEEecC----CCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC------CceEEEEECCC
Confidence            445555554321    12579999999987765543321  11222222 454 554544332      34799999998


Q ss_pred             CccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeE
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEEL  302 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~l  302 (390)
                      +.    ...+......     ....+. -+|+..+++....+...+.++|..+++-..+..   .......++...+|+.
T Consensus       257 ~~----~~~l~~~~~~-----~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          257 GQ----IRQVTDGRSN-----NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW---EGSQNQDADVSSDGKF  324 (415)
T ss_dssp             CC----EEECCCCSSC-----EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC---SSSEEEEEEECTTSSE
T ss_pred             CC----EEeCcCCCCc-----ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec---CCCcccCeEECCCCCE
Confidence            88    6655443221     122222 266644443221233457788988876555433   1111112232356765


Q ss_pred             EEEeCCC---CcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-Cc--eEEEEEcCCCCCcceEecCCCCe
Q 016368          303 YVVNEGK---GRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-GE--RIMVVDVLASPARAWLVDPPRGF  375 (390)
Q Consensus       303 yv~gg~~---~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~~--~v~~~d~~~~~~~~W~~~~p~g~  375 (390)
                      ++++..+   ..++.+|.++.....+....   ....+... +|+.++++.. +.  .++++|+.+..  ...+....| 
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~--~~~l~~~~~-  398 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDG-  398 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSS-
T ss_pred             EEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc--EEEeeCCCC-
Confidence            5555432   38999999998877655321   22333333 5665555433 32  79999987551  222333444 


Q ss_pred             eEEEEEeeccc
Q 016368          376 QVVAVHVLPRM  386 (390)
Q Consensus       376 ~~~~~~~~~~~  386 (390)
                      .+..++.-|.+
T Consensus       399 ~v~~~~~~~~~  409 (415)
T 2hqs_A          399 QVKFPAWSPYL  409 (415)
T ss_dssp             EEEEEEECCCC
T ss_pred             CCcCCcccccc
Confidence            45555555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.48  E-value=0.056  Score=48.74  Aligned_cols=175  Identities=11%  Similarity=0.039  Sum_probs=100.8

Q ss_pred             CCCcEEEeCCC----Cceec-CC-CCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc
Q 016368          163 LASPLAFNPQS----NTWFF-GP-QLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA  234 (390)
Q Consensus       163 ~~~~~~~dp~t----~~W~~-~~-~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~  234 (390)
                      .+.++++++.+    ..... ++ .+..|   .++++  .++.||+.-.        ....++++|+....    -+.+.
T Consensus        51 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~--------~~~~I~~~~~~g~~----~~~~~  115 (316)
T 1ijq_A           51 QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVK----RKTLF  115 (316)
T ss_dssp             TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEET--------TTTEEEEEETTSSS----EEEEE
T ss_pred             CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEEC--------CCCEEEEEeCCCCc----eEEEE
Confidence            35788899876    22222 11 12222   34444  3789999743        23478899987654    33332


Q ss_pred             cCCCCCccccceEEEEE--CCEEEEEcccCCCC-ceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEe-eCCeEEEEeCCC
Q 016368          235 QLKDGRFSREAVEAVGF--KGNLCMVNLKGNGA-KDGAIYNVELDKWKEMPEGMHAGWNGP-AASTM-NEEELYVVNEGK  309 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~-~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~g~lyv~gg~~  309 (390)
                      ......    ..++++.  ++.||+..   .+. ..++++++....-+.+.. .  ....+ ++++. .+++||+.....
T Consensus       116 ~~~~~~----P~~iavdp~~g~ly~~d---~~~~~~I~~~~~dG~~~~~~~~-~--~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          116 RENGSK----PRAIVVDPVHGFMYWTD---WGTPAKIKKGGLNGVDIYSLVT-E--NIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             ECTTCC----EEEEEEETTTTEEEEEE---CSSSCEEEEEETTSCCEEEEEC-S--SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCC----cceEEeCCCCCEEEEEc---cCCCCeEEEEcCCCCCeEEEEE-C--CCCCceEEEEeccCCEEEEEECCC
Confidence            211111    1344543  78999983   222 567888886544333322 1  11122 34431 368999999888


Q ss_pred             CcEEEEECCCCceEEcccc-cccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          310 GRLSKYDADHDWWDEVIEL-AELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       310 ~~v~~yd~~~~~W~~i~~~-p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+++|.....=+.+... .......++++.++.||+.-..++.|..+|..+.
T Consensus       186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            8999999986443444322 1233456788889999998666778999997654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.47  E-value=0.047  Score=47.62  Aligned_cols=178  Identities=8%  Similarity=-0.031  Sum_probs=101.2

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      .+.+.++++.+..-..+..... ..-+++++.  ++.||+.-..        ...+.++|+....    -+.+.......
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~g~~----~~~~~~~~~~~  123 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMDGTQ----RRVLFDTGLVN  123 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECSSCSS
T ss_pred             CCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC--------CCEEEEEEcCCCC----EEEEEECCCCC
Confidence            3579999987664332211111 122344443  5799997533        3478899987654    33332211111


Q ss_pred             ccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEEC
Q 016368          241 FSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       241 ~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~  317 (390)
                          ...+++.  ++++|+.... .....+.++++....-+.+.. ... ....++++.. ++.||+.....+.+.+||+
T Consensus       124 ----P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~~~~~~~~-~~~-~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          124 ----PRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNRRILAQ-DNL-GLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             ----EEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCCCEEEEC-TTC-SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ----ccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCCCcEEEEE-CCC-CCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence                1344444  6899998311 012456678876543333321 111 1112333312 5799999988889999999


Q ss_pred             CCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          318 DHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+..-..+.  .......+++..++.||+....++.|.++|..+.
T Consensus       197 ~g~~~~~~~--~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          197 AQPGRRKVL--EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             TEEEEEEEE--ECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEe--cCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence            864322222  1223345677778999998666779999998865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.0082  Score=54.76  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=106.3

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--G--GVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      +..++.++.       -..+.+||....+++.+..+...........+  +  +.+++.|+.+.        .+.+||..
T Consensus        23 ~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~v~iwd~~   87 (379)
T 3jrp_A           23 GKRLATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKEE   87 (379)
T ss_dssp             SSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEEEEE
T ss_pred             CCEEEEEEC-------CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC--------EEEEEEcC
Confidence            455555543       13688888876666554433322222222333  2  56777776654        68899999


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEE-C--CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-  298 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-  298 (390)
                      ++.    |..+..+......  ..+++.. +  +.+++.|+   ....+.+||..+..-...............+.... 
T Consensus        88 ~~~----~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           88 NGR----WSQIAVHAVHSAS--VNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             TTE----EEEEEEECCCSSC--EEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CCc----eeEeeeecCCCcc--eEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            988    7766654432211  1233332 2  45555531   23456789987663211111000111111222212 


Q ss_pred             ------------CCeEEEEeCCCCcEEEEECCCCc--eEEccccccccccee-EEEE-C---CEEEEEeeCCceEEEEEc
Q 016368          299 ------------EEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEK-ITAA-R---GRVCAVCENGERIMVVDV  359 (390)
Q Consensus       299 ------------~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~-~~~~-~---g~l~i~g~~~~~v~~~d~  359 (390)
                                  ++.+++.|+.++.+..||..+..  +..+..+........ +... +   +.+++.++.+..+.+||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        58888999989999999886543  555554444333333 3333 4   678888777888999998


Q ss_pred             CCC
Q 016368          360 LAS  362 (390)
Q Consensus       360 ~~~  362 (390)
                      .+.
T Consensus       239 ~~~  241 (379)
T 3jrp_A          239 DNE  241 (379)
T ss_dssp             SST
T ss_pred             CCC
Confidence            875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.44  E-value=0.016  Score=52.48  Aligned_cols=181  Identities=12%  Similarity=0.042  Sum_probs=94.0

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-G-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      ...++++|+.+++....-+..  ..-..++.. + ..+|+.+..+        ..+.+||+.+++    -...-......
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~  133 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN--------SAVTAIDAKTGE----VKGRLVLDDRK  133 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT--------TEEEEEETTTCC----EEEEEESCCCC
T ss_pred             CccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC--------CEEEEEeCCCCe----eEEEEecCCCc
Confidence            357999999888654322211  112233333 3 4588776543        378999998877    32221121110


Q ss_pred             c-----cccceEEEEE-C-CEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcE
Q 016368          241 F-----SREAVEAVGF-K-GNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRL  312 (390)
Q Consensus       241 ~-----~r~~~~~~~~-~-g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v  312 (390)
                      .     ......++.. + +.+|+.+..  ....+.+||+.+.+-.. ++.   .+.....++...+|+.+++...++.+
T Consensus       134 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i  208 (353)
T 3vgz_A          134 RTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGGNIKLKTAIQN---TGKMSTGLALDSEGKRLYTTNADGEL  208 (353)
T ss_dssp             CCSSCCCCEEEEEEEETTTTEEEEEEES--SSCEEEEEETTTTEEEEEECC---CCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred             cccccCCCCCceEEECCCCCEEEEEecC--CCceEEEEcCCCCceEEEecC---CCCccceEEECCCCCEEEEEcCCCeE
Confidence            0     0001223332 4 457776311  13457889998764332 221   11111222322566544455557899


Q ss_pred             EEEECCCCceEEccccc---ccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIELA---ELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~p---~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+||..+.+-......+   ......+++..  ++.+|+.....+.+.++|+.+.
T Consensus       209 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          209 ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            99999876543322221   11122334444  4568777666679999999765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.43  E-value=0.017  Score=51.70  Aligned_cols=181  Identities=9%  Similarity=0.040  Sum_probs=98.3

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ++..++.++.       -..+.+||..+++....-.... ..-.+++.. +++.++.|+.+.        .+.+||..+.
T Consensus       152 ~~~~l~~~~~-------dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~  215 (337)
T 1gxr_A          152 DSKVCFSCCS-------DGNIAVWDLHNQTLVRQFQGHT-DGASCIDISNDGTKLWTGGLDN--------TVRSWDLREG  215 (337)
T ss_dssp             TSSEEEEEET-------TSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS--------EEEEEETTTT
T ss_pred             CCCEEEEEeC-------CCcEEEEeCCCCceeeeeeccc-CceEEEEECCCCCEEEEEecCC--------cEEEEECCCC
Confidence            3455555543       2468899998775432211111 111122222 566666666543        7889999877


Q ss_pred             ccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                      .    -...-.....     ..+++. -+++.+++|+   ....+.+||..+.+-.....   .......+....+++++
T Consensus       216 ~----~~~~~~~~~~-----v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l  280 (337)
T 1gxr_A          216 R----QLQQHDFTSQ-----IFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             E----EEEEEECSSC-----EEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECC---CSSCEEEEEECTTSSEE
T ss_pred             c----eEeeecCCCc-----eEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcC---CccceeEEEECCCCCEE
Confidence            6    2222222111     122332 3566666642   23457789988765433322   11112233323568888


Q ss_pred             EEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          304 VVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      +.++.++.+..||..+.+-....  .......++... +++.++.++.++.+.+||+
T Consensus       281 ~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            88888999999999876544221  122222233333 5667777777778888886

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.41  E-value=0.018  Score=51.42  Aligned_cols=184  Identities=8%  Similarity=-0.009  Sum_probs=99.6

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      +..+++++.       -..+.+||..+++......+....... +++.. +++.++.|+.+.        .+.+||..+.
T Consensus       109 ~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~v~~~d~~~~  173 (337)
T 1gxr_A          109 GCTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHNQ  173 (337)
T ss_dssp             SSEEEEEES-------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTT
T ss_pred             CCEEEEEcC-------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC--------cEEEEeCCCC
Confidence            455555543       246889999887644333222222222 22222 556666666553        6889999887


Q ss_pred             ccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                      .    ....-......    ..+++.. +++.++.++   ....+.+||+.+.+-...-.   .......++...++.++
T Consensus       174 ~----~~~~~~~~~~~----i~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          174 T----LVRQFQGHTDG----ASCIDISNDGTKLWTGG---LDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             E----EEEEECCCSSC----EEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEE
T ss_pred             c----eeeeeecccCc----eEEEEECCCCCEEEEEe---cCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCEE
Confidence            6    33221111111    1223322 555555531   23456789988764322211   11111223323578888


Q ss_pred             EEeCCCCcEEEEECCCCceEEcccccccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          304 VVNEGKGRLSKYDADHDWWDEVIELAELKGA-EKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++++.++.+..||..+..-..+.   ..... ..+... ++++++.++.++.+.+||+.+.
T Consensus       240 ~~~~~~~~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          240 AVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEcCCCcEEEEECCCCCeEEEc---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence            89888899999999876533222   12222 233333 5677777777789999998875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.39  E-value=0.023  Score=50.60  Aligned_cols=187  Identities=10%  Similarity=0.027  Sum_probs=97.3

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      +.+++.++.       -..+.+||..+++-...  +...........+  ++.+++.|+.+.        .+.+||..+.
T Consensus        77 ~~~l~s~~~-------d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~  139 (312)
T 4ery_A           77 SNLLVSASD-------DKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVKTG  139 (312)
T ss_dssp             SSEEEEEET-------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTTC
T ss_pred             CCEEEEECC-------CCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCC
Confidence            455555543       24688899887643221  1111111112222  456667776654        6889999876


Q ss_pred             ccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                      .    -..  .+......  ..+++. -++++++.|+   ....+.+||..+.+-...-. .........+....+++.+
T Consensus       140 ~----~~~--~~~~~~~~--v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  207 (312)
T 4ery_A          140 K----CLK--TLPAHSDP--VSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYI  207 (312)
T ss_dssp             C----EEE--EECCCSSC--EEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEE
T ss_pred             E----EEE--EecCCCCc--EEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEE
Confidence            6    221  22111110  122222 2566666642   23457789998765432211 1111111122223578888


Q ss_pred             EEeCCCCcEEEEECCCCceEEccccc-ccccc-e-eEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          304 VVNEGKGRLSKYDADHDWWDEVIELA-ELKGA-E-KITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~-~-~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.++.++.+..||..+.+-...-... ..... . .....++.+++.|+.++.|.+||+.+.
T Consensus       208 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            88888999999999876432221111 11111 1 122236777777777789999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.36  E-value=0.0097  Score=53.48  Aligned_cols=179  Identities=9%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc--ccCCCCC
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK--AQLKDGR  240 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~--~~~~~~~  240 (390)
                      .+.+||+.+++....-  +....-+.++.. ++ .||+.+....       ..+.+|+...+..   -...  ...+...
T Consensus       109 ~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~-------~~i~~~~~~~~g~---~~~~~~~~~~~~~  176 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSA-------NTVRRFKIDADGV---LFDTGQEFISGGT  176 (331)
T ss_dssp             EEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTT-------TEEEEEEECTTCC---EEEEEEEEECSSS
T ss_pred             cEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCC-------ceEEEEEECCCCc---EeecCCccccCCC
Confidence            7999999888654321  112222334433 44 4787765432       1277777765430   1111  1111111


Q ss_pred             ccccceEEEE-ECCE-EEEEcccCCCCceeEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEE
Q 016368          241 FSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYD  316 (390)
Q Consensus       241 ~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd  316 (390)
                      .   ...++. -+|+ +|+.+   .....+.+||+.+.+. +.+.. .+.+.....++...+|+ ||+....++.+.+||
T Consensus       177 ~---~~~~~~spdg~~l~v~~---~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          177 R---PFNITFTPDGNFAFVAN---LIGNSIGILETQNPENITLLNA-VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             S---EEEEEECTTSSEEEEEE---TTTTEEEEEECSSTTSCEEEEE-EECSSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             C---ccceEECCCCCEEEEEe---CCCCeEEEEECCCCcccceeee-ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            1   122333 2565 77763   2345678999987765 11111 11222222333325666 666665566899999


Q ss_pred             CCCCceEEccccccc-----ccc---eeEEEE-C-CEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAEL-----KGA---EKITAA-R-GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~-----r~~---~~~~~~-~-g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++.+...+...+..     +..   ..++.. + ..||+.+..++.+.+||+.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            998877555433321     111   123333 4 457777666779999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.33  E-value=0.043  Score=50.98  Aligned_cols=176  Identities=7%  Similarity=-0.036  Sum_probs=95.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+||..+++............-.+++.. ++.+++.|+.++        .+.+||..+..    -...-.....   
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------~i~iwd~~~~~----~~~~~~~~~~---  177 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG--------LVDIYDVESQT----KLRTMAGHQA---  177 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS---
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC--------eEEEEECcCCe----EEEEecCCCC---
Confidence            4699999998876554333222222223332 566667766554        68899998876    3222111111   


Q ss_pred             ccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce
Q 016368          243 REAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW  322 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W  322 (390)
                        ....+..++.+++.|+   ....+.+||.....-..... ........++....++.+++.|+.++.+..||..+..-
T Consensus       178 --~v~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          178 --RVGCLSWNRHVLSSGS---RSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             --CEEEEEEETTEEEEEE---TTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred             --ceEEEEECCCEEEEEc---CCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence              1333334666555532   23456789987432111111 11111112233224788899999999999999987442


Q ss_pred             EEcccccccccc-eeEEEE--CCEEEEEee--CCceEEEEEcCCC
Q 016368          323 DEVIELAELKGA-EKITAA--RGRVCAVCE--NGERIMVVDVLAS  362 (390)
Q Consensus       323 ~~i~~~p~~r~~-~~~~~~--~g~l~i~g~--~~~~v~~~d~~~~  362 (390)
                      ..  .+...... .++...  ++.+++.|+  .+..+.+||+.+.
T Consensus       252 ~~--~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          252 KF--TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             EE--EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             cE--EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            22  12122222 233333  456777754  4678999998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.30  E-value=0.019  Score=53.43  Aligned_cols=193  Identities=11%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKK  218 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  218 (390)
                      .++..++..++.|+.       -..+.+||..+..-.. ..+....... +++.. ++.+++.|+.+.        .+.+
T Consensus       180 ~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~v~i  243 (401)
T 4aez_A          180 GCLSWNRHVLSSGSR-------SGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDN--------VVQI  243 (401)
T ss_dssp             EEEEEETTEEEEEET-------TSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEE
T ss_pred             EEEEECCCEEEEEcC-------CCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCCCEEEEEeCCC--------eEEE
Confidence            455556777766654       2468888887432110 0111111111 22222 566777777654        6889


Q ss_pred             EECCCCccccccE-EcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEE
Q 016368          219 WDLKSDREDWKWE-KKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAS  295 (390)
Q Consensus       219 yd~~t~~~~~~W~-~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  295 (390)
                      ||..+..    -. .+......     ..+++..  +..+++.|+ |.....+.+||..+.+-...-.   .......++
T Consensus       244 wd~~~~~----~~~~~~~~~~~-----v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~  310 (401)
T 4aez_A          244 WDARSSI----PKFTKTNHNAA-----VKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVD---AGSQVTSLI  310 (401)
T ss_dssp             EETTCSS----EEEEECCCSSC-----CCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEE---CSSCEEEEE
T ss_pred             ccCCCCC----ccEEecCCcce-----EEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEe---CCCcEEEEE
Confidence            9998765    22 11111111     1233333  345666642 1123457789988765332211   111112223


Q ss_pred             EeeCCeEEEE--eCCCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          296 TMNEEELYVV--NEGKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       296 ~~~~g~lyv~--gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ...++..++.  |..++.+..||..+.....+..++...... .+... +++.++.++.++.+.+||+.+.
T Consensus       311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            2246666666  547889999999887777766554443333 33333 6777777677789999999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.27  E-value=0.0064  Score=55.30  Aligned_cols=229  Identities=12%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCc
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNT  175 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~  175 (390)
                      +....++.+|..++++..+..........               ..+.. ++.+|+.....     ....+++||..+++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~---------------~~a~spdg~l~~~~~~~-----~~~~v~~~~~~~g~   74 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPT---------------YLALSAKDCLYSVDKED-----DEGGIAAWQIDGQT   74 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCC---------------CEEECTTCEEEEEEEET-----TEEEEEEEEEETTE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcc---------------eEEEccCCeEEEEEecC-----CCceEEEEEecCCc
Confidence            34566888898888876643221101100               22223 45544443221     12578899998887


Q ss_pred             eecCCCCCCC-CcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCC-CccccccEEcccCCC---C---Ccc-cc
Q 016368          176 WFFGPQLSIP-RRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKS-DREDWKWEKKAQLKD---G---RFS-RE  244 (390)
Q Consensus       176 W~~~~~~~~~-r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t-~~~~~~W~~~~~~~~---~---~~~-r~  244 (390)
                      ++.+...... ..-..++.. ++ .||+.+..+        ..+.+||... +.    .+.+.....   .   +.. ..
T Consensus        75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK--------GTAEVMKIAADGA----LTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT--------TEEEEEEECTTSC----EEEEEEEECCCCCSSTTCSSCC
T ss_pred             EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC--------CEEEEEEeCCCCC----eeecceeecCCCCCCccccCCC
Confidence            7665442211 111223333 44 466665322        3677888753 33    333322211   0   000 00


Q ss_pred             ceEEEE-ECCEEEEEcccCCCCceeEEEeCC-CCCeEecCCC-CCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEECC--
Q 016368          245 AVEAVG-FKGNLCMVNLKGNGAKDGAIYNVE-LDKWKEMPEG-MHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYDAD--  318 (390)
Q Consensus       245 ~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~-~~~W~~~~~~-~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~--  318 (390)
                      .+.++. -+|++|+.+   .+...+.+||.. +++...+... .+.+.....++...+|+ ||+.+..++.+.+|+..  
T Consensus       143 ~~~~~~spdg~l~v~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          143 IHYTDLTPDNRLAVID---LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             EEEEEECTTSCEEEEE---TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEECCCCcEEEEe---CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            122333 377777763   234567789987 5555543210 11111111233335676 78777767766666554  


Q ss_pred             CCceEEccccccc-------ccceeEEEE-CCE-EEEEeeCCceEEEEEcC
Q 016368          319 HDWWDEVIELAEL-------KGAEKITAA-RGR-VCAVCENGERIMVVDVL  360 (390)
Q Consensus       319 ~~~W~~i~~~p~~-------r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~  360 (390)
                      +.++..+..+...       .....++.. +|+ ||+.....+.+.+||+.
T Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            5666554432211       112234333 554 77776667788899876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.26  E-value=0.0059  Score=55.51  Aligned_cols=197  Identities=9%  Similarity=0.025  Sum_probs=101.7

Q ss_pred             EEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccc
Q 016368          149 LVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDRED  227 (390)
Q Consensus       149 l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~  227 (390)
                      .+++|.+.... ...-.++.+|+.+++++.+........-..++.. +++||+.+...      ....+.+||+.++.  
T Consensus         4 ~~~vg~y~~~~-~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~------~~~~v~~~~~~~g~--   74 (347)
T 3hfq_A            4 RILFGTYTKKT-SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED------DEGGIAAWQIDGQT--   74 (347)
T ss_dssp             EEEEEECCSSS-CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET------TEEEEEEEEEETTE--
T ss_pred             EEEEEeccCCC-CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC------CCceEEEEEecCCc--
Confidence            35556543221 1122367778888887664322211111223322 67888776432      12478999998877  


Q ss_pred             cccEEcccCCCCCccccceEEE-EECCE-EEEEcccCCCCceeEEEeCC-CCCeEecCCC-----CCCCC----CCceEE
Q 016368          228 WKWEKKAQLKDGRFSREAVEAV-GFKGN-LCMVNLKGNGAKDGAIYNVE-LDKWKEMPEG-----MHAGW----NGPAAS  295 (390)
Q Consensus       228 ~~W~~~~~~~~~~~~r~~~~~~-~~~g~-lyv~gg~g~~~~~~~~yd~~-~~~W~~~~~~-----~~~~~----~~~~~~  295 (390)
                        ++.+.........  ...++ .-+|+ +|+.+   .....+.+||.. +++.+.+...     .+..+    ....++
T Consensus        75 --~~~~~~~~~~~~~--p~~~a~spdg~~l~~~~---~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~  147 (347)
T 3hfq_A           75 --AHKLNTVVAPGTP--PAYVAVDEARQLVYSAN---YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD  147 (347)
T ss_dssp             --EEEEEEEEEESCC--CSEEEEETTTTEEEEEE---TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred             --EEEeeeeecCCCC--CEEEEECCCCCEEEEEe---CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence              7666542211110  12233 33555 66652   123456788874 3344332210     01101    111233


Q ss_pred             EeeCCeEEEEeCCCCcEEEEECC-CCceEEcccccc--cccceeEEEE-CCE-EEEEeeCCceEEEEEcCC
Q 016368          296 TMNEEELYVVNEGKGRLSKYDAD-HDWWDEVIELAE--LKGAEKITAA-RGR-VCAVCENGERIMVVDVLA  361 (390)
Q Consensus       296 ~~~~g~lyv~gg~~~~v~~yd~~-~~~W~~i~~~p~--~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~  361 (390)
                      ...+|++|+.+..++.+.+||.. +.+...+.....  ......++.. +|+ +|+.+..++.+.+||+..
T Consensus       148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            33578888887777789999988 555655443221  1122233333 555 787766677888887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.26  E-value=0.21  Score=50.98  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=92.1

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCC-ceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGA-KDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~-~~~~~y  271 (390)
                      +++||+.-.        ....|+++++....    -+.+..-....    ..++++  .+|.||+.-   .+. ..++++
T Consensus       482 ~~~LY~tD~--------~~~~I~v~~ldG~~----~~~l~~~~l~~----P~gIaVDp~~g~LYwtD---~g~~~~I~~~  542 (791)
T 3m0c_C          482 HSNIYWTDS--------VLGTVSVADTKGVK----RKTLFRENGSK----PRAIVVDPVHGFMYWTD---WGTPAKIKKG  542 (791)
T ss_dssp             TTEEEEEET--------TTTEEEEEETTSSS----EEEEEECTTCC----EEEEEEETTTTEEEEEE---CSSSCEEEEE
T ss_pred             CCcEEEEec--------CCCeEEEEeCCCCe----EEEEEeCCCCC----cceEEEecCCCCEEEec---CCCCCeEEEE
Confidence            679999743        34589999998765    44443211111    134554  368999982   222 568888


Q ss_pred             eCCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccc-cccccceeEEEECCEEEEEe
Q 016368          272 NVELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIEL-AELKGAEKITAARGRVCAVC  348 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~-p~~r~~~~~~~~~g~l~i~g  348 (390)
                      ++....=+.+..   .....+ ++++ ..+++||+.....+.|+++|+....=..+... ......+++++.+++||+.-
T Consensus       543 ~~dG~~~~~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD  619 (791)
T 3m0c_C          543 GLNGVDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD  619 (791)
T ss_dssp             ETTSCCEEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             ecCCCceEEEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence            887654433322   111222 3443 14799999998788999999986543343321 22345568888999999986


Q ss_pred             eCCceEEEEEcCCC
Q 016368          349 ENGERIMVVDVLAS  362 (390)
Q Consensus       349 ~~~~~v~~~d~~~~  362 (390)
                      ...+.|+.+|..+.
T Consensus       620 ~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          620 IINEAIFSANRLTG  633 (791)
T ss_dssp             TTTTEEEEEETTTC
T ss_pred             CCCCEEEEEeCCCC
Confidence            66778999997655

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.23  E-value=0.012  Score=52.53  Aligned_cols=180  Identities=9%  Similarity=0.037  Sum_probs=94.2

Q ss_pred             CcEEEeCCCCceecC-CCCCC--CCc-ceEEEEE-CCEEEEEeccCCC-------CCCCccCeEEEEECCCCccccccEE
Q 016368          165 SPLAFNPQSNTWFFG-PQLSI--PRR-WCAMGSV-GGVVYVASGVGAH-------YRGDVARSMKKWDLKSDREDWKWEK  232 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~-~~~~~--~r~-~~~~~~~-~~~lyv~GG~~~~-------~~~~~~~~~~~yd~~t~~~~~~W~~  232 (390)
                      .+++||+. ++...+ .....  +.. -..++.. +++||+.......       ........+++||+. ++    .+.
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~  166 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----MIQ  166 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----EEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----EEE
Confidence            68999998 777655 32211  111 1233332 6788887543210       001123478889887 55    444


Q ss_pred             ccc-CCCCCccccceEEEEE-----CC-EEEEEcccCCCCceeEEEeCC-CCCe------EecCCCCCCCCCCceEEEee
Q 016368          233 KAQ-LKDGRFSREAVEAVGF-----KG-NLCMVNLKGNGAKDGAIYNVE-LDKW------KEMPEGMHAGWNGPAASTMN  298 (390)
Q Consensus       233 ~~~-~~~~~~~r~~~~~~~~-----~g-~lyv~gg~g~~~~~~~~yd~~-~~~W------~~~~~~~~~~~~~~~~~~~~  298 (390)
                      +.. ...      ....+..     ++ .+|+..   .....+.+||+. +++.      ..++... . .....++...
T Consensus       167 ~~~~~~~------~~~i~~~~~~d~dg~~l~v~~---~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~-~~p~~i~~d~  235 (314)
T 1pjx_A          167 VDTAFQF------PNGIAVRHMNDGRPYQLIVAE---TPTKKLWSYDIKGPAKIENKKVWGHIPGTH-E-GGADGMDFDE  235 (314)
T ss_dssp             EEEEESS------EEEEEEEECTTSCEEEEEEEE---TTTTEEEEEEEEETTEEEEEEEEEECCCCS-S-CEEEEEEEBT
T ss_pred             eccCCCC------cceEEEecccCCCCCEEEEEE---CCCCeEEEEECCCCCccccceEEEECCCCC-C-CCCCceEECC
Confidence            321 111      1333333     34 477762   123557788875 3433      2222100 0 1112333334


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      +|.||+.....+.+.+||+++.+.......+. ....+++.. +|+ ||+.....+.++.+|+...
T Consensus       236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            78999887667789999998544322222221 223334432 555 8887655678999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.22  E-value=0.062  Score=49.83  Aligned_cols=106  Identities=10%  Similarity=-0.028  Sum_probs=60.3

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEECCCCceEEcccccc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYDADHDWWDEVIELAE  330 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~~W~~i~~~p~  330 (390)
                      ++++.+.|+   ....+.+||+.+.+-..... ........+++...++. +++.|+.++.+..||..+..- .+..+..
T Consensus       258 ~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~  332 (420)
T 3vl1_A          258 YGKYVIAGH---VSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-PVGEFLI  332 (420)
T ss_dssp             TTEEEEEEE---TTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEEE
T ss_pred             CCCEEEEEc---CCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-chhhhhc
Confidence            566666642   22347789987765322211 11111122233224565 888888899999999987532 1111111


Q ss_pred             -cc-cceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          331 -LK-GAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       331 -~r-~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       .. ....+...++++++.++.+..+.+||+...
T Consensus       333 ~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          333 NEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             STTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             cCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence             11 122344457888888777889999998773

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.21  E-value=0.12  Score=47.17  Aligned_cols=174  Identities=11%  Similarity=0.042  Sum_probs=104.8

Q ss_pred             CCCcEEEeCCCCceecCC--CCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC
Q 016368          163 LASPLAFNPQSNTWFFGP--QLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD  238 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~--~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~  238 (390)
                      .+.++++++.....+.+.  .+..|   .++++  .++.||+.-..        ...++++++....    -+.+..-..
T Consensus        94 ~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~--------~~~I~~~~~dG~~----~~~l~~~~l  158 (349)
T 3v64_C           94 LDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG--------TSRIEVANLDGAH----RKVLLWQSL  158 (349)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECTTC
T ss_pred             CCceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC--------CCeEEEEcCCCCc----eEEEEeCCC
Confidence            357889998876544432  12122   23444  37899987432        3488999987655    333322111


Q ss_pred             CCccccceEEEEE--CCEEEEEcccCCCC-ceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEe-eCCeEEEEeCCCCcEE
Q 016368          239 GRFSREAVEAVGF--KGNLCMVNLKGNGA-KDGAIYNVELDKWKEMPEGMHAGWNGP-AASTM-NEEELYVVNEGKGRLS  313 (390)
Q Consensus       239 ~~~~r~~~~~~~~--~g~lyv~gg~g~~~-~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~g~lyv~gg~~~~v~  313 (390)
                      ..    ..++++.  ++.||+..   .+. ..++++++....-+.+..   .....+ ++++. .+++||+.....+.|+
T Consensus       159 ~~----P~~iavdp~~g~ly~td---~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          159 EK----PRAIALHPMEGTIYWTD---WGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             SC----EEEEEEETTTTEEEEEE---CSSSCEEEEEETTSCSCEESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CC----cceEEEecCcCeEEEec---cCCCCEEEEEeCCCCCcEEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            11    1344544  78999983   233 668889887654444322   111222 34432 3789999998888999


Q ss_pred             EEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          314 KYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++|+....=..+.... .....++++.++.||+.-...+.|..+|..+.
T Consensus       229 ~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          229 RANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            9998864333332211 23456788889999998666778999985443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.21  E-value=0.042  Score=49.87  Aligned_cols=193  Identities=12%  Similarity=0.070  Sum_probs=103.1

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++.++++++.       -..+.+||..++++..+..+...... .+++.. ++++++.|+.+.        .+.+||..+
T Consensus        19 ~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECS-------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEET
T ss_pred             CCCEEEEEeC-------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC--------eEEEEECCC
Confidence            3455655533       25789999988876555444322222 223333 566667776553        688899988


Q ss_pred             CccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCC-eEecCCC-CCCCCCCceEEEeeCC
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEG-MHAGWNGPAASTMNEE  300 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~-~~~~~~~~~~~~~~~g  300 (390)
                      +.    +.....+......  ..+++.. +++.++.|+   ....+.+||..+.. |...... .+.......+....++
T Consensus        84 ~~----~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           84 RT----WKPTLVILRINRA--ARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             TE----EEEEEECCCCSSC--EEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             Ce----eeeeEEeecCCCc--eeEEEECCCCCEEEEEe---CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            87    6654332211110  1223322 555555542   22346677776553 3332220 1111112233322478


Q ss_pred             eEEEEeCCCCcEEEEECCCC----------------ceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHD----------------WWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~----------------~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+++.++.++.+..||....                .-..+..+....... .+... ++..++.++.++.+.+||+.+.
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            88888988999999996421                112222222222222 23332 5667777677789999999765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.012  Score=54.47  Aligned_cols=186  Identities=9%  Similarity=-0.002  Sum_probs=96.0

Q ss_pred             eecCeEEEEEeecCCCCCCCCCcEEEeCCCCceec-CCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          144 GVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       144 ~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ...++.+++++.       -..+.+||..+++-.. +...  ...-.+++.. ++++++.|+.+.        .+.+||.
T Consensus       214 ~~~~~~~~~~~~-------~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~--------~i~i~d~  276 (425)
T 1r5m_A          214 WVDDDKFVIPGP-------KGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLSASDDG--------TLRIWHG  276 (425)
T ss_dssp             EEETTEEEEECG-------GGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEEEETTS--------CEEEECS
T ss_pred             EcCCCEEEEEcC-------CCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEEEcCCC--------EEEEEEC
Confidence            344566666654       2468899988763221 1111  1111222333 566666666543        6788998


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      .+..    -...-......    ..+++.. ++ +++.++   ....+.+||..+.+-...-. . .......++...++
T Consensus       277 ~~~~----~~~~~~~~~~~----i~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~-~-~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          277 GNGN----SQNCFYGHSQS----IVSASWVGDD-KVISCS---MDGSVRLWSLKQNTLLALSI-V-DGVPIFAGRISQDG  342 (425)
T ss_dssp             SSBS----CSEEECCCSSC----EEEEEEETTT-EEEEEE---TTSEEEEEETTTTEEEEEEE-C-TTCCEEEEEECTTS
T ss_pred             CCCc----cceEecCCCcc----EEEEEECCCC-EEEEEe---CCCcEEEEECCCCcEeEecc-c-CCccEEEEEEcCCC
Confidence            8765    22111111111    1334433 45 444421   23457789987764322211 1 11111223322568


Q ss_pred             eEEEEeCCCCcEEEEECCCCc------------------eEEccccccccc--ce-eEEEE-CCEEEEEeeCCceEEEEE
Q 016368          301 ELYVVNEGKGRLSKYDADHDW------------------WDEVIELAELKG--AE-KITAA-RGRVCAVCENGERIMVVD  358 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~------------------W~~i~~~p~~r~--~~-~~~~~-~g~l~i~g~~~~~v~~~d  358 (390)
                      .+++.++.++.+..||..+..                  ...+..+.....  .. .+... +++.++.++.++.+.+||
T Consensus       343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence            888888888999999987544                  112233332221  22 33333 566666767777899998


Q ss_pred             cC
Q 016368          359 VL  360 (390)
Q Consensus       359 ~~  360 (390)
                      +.
T Consensus       423 ~~  424 (425)
T 1r5m_A          423 IP  424 (425)
T ss_dssp             CC
T ss_pred             ec
Confidence            75

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.14  E-value=0.041  Score=48.96  Aligned_cols=174  Identities=11%  Similarity=0.021  Sum_probs=92.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++....-.  ..... .+++.. ++++++.|+.+.        .+.+||..+..    -...-...... 
T Consensus        45 g~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~vwd~~~~~----~~~~~~~~~~~-  109 (312)
T 4ery_A           45 KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDK--------TLKIWDVSSGK----CLKTLKGHSNY-  109 (312)
T ss_dssp             SCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTCC----EEEEEECCSSC-
T ss_pred             CeEEEEeCCCcccchhhc--cCCCceEEEEEcCCCCEEEEECCCC--------EEEEEECCCCc----EEEEEcCCCCC-
Confidence            357888888776543211  11111 122222 566777776654        78899998876    22211111111 


Q ss_pred             cccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                         ..+++. -++.+++.|+   ....+.+||+.+.+-.. +..   .......+....++.+++.++.++.+..||..+
T Consensus       110 ---v~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          110 ---VFCCNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             ---EEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ---EEEEEEcCCCCEEEEEe---CCCcEEEEECCCCEEEEEecC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence               122222 2455555532   23457789988765322 211   111111222224788888999999999999987


Q ss_pred             CceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+-....... .........+  +++.++.++.++.+.+||+.+.
T Consensus       181 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          181 GQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             CCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            6543221111 1111222222  5667777777778999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.05  Score=49.11  Aligned_cols=179  Identities=14%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++-...  +....... +++.. +++.++.|+.+.        .+.+||..+..    -...-.....  
T Consensus        54 g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~~--  117 (369)
T 3zwl_B           54 SSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSADY--------SIKLWDVSNGQ----CVATWKSPVP--  117 (369)
T ss_dssp             SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTT--------EEEEEETTTCC----EEEEEECSSC--
T ss_pred             CEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEeecCCC--
Confidence            4688999887654321  11111112 22222 466666766653        78899998876    3332222211  


Q ss_pred             cccceEEEE-ECCEEEEEcccC--CCCceeEEEeCCCCC----eEecCCC----C-CCCC--CCceEEEeeCCeEEEEeC
Q 016368          242 SREAVEAVG-FKGNLCMVNLKG--NGAKDGAIYNVELDK----WKEMPEG----M-HAGW--NGPAASTMNEEELYVVNE  307 (390)
Q Consensus       242 ~r~~~~~~~-~~g~lyv~gg~g--~~~~~~~~yd~~~~~----W~~~~~~----~-~~~~--~~~~~~~~~~g~lyv~gg  307 (390)
                         ..+++. -+++.++.++..  .....+.+||..+..    +......    . ....  ....++...+++.+++++
T Consensus       118 ---v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          118 ---VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             ---EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred             ---eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence               122222 255555553221  011345667765432    2211110    0 0000  111222235678888888


Q ss_pred             CCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          308 GKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       308 ~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++.+..||..+. ...+..+....... .+... ++..++.++.+..+.+||+.+.
T Consensus       195 ~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          195 KDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             TTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            8999999999863 22222222222222 33333 6777777777789999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.12  E-value=0.16  Score=46.90  Aligned_cols=189  Identities=7%  Similarity=-0.018  Sum_probs=97.4

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ++.+++.|+.       -..+.+||..+++-...-... ...-.+++.. ++++++.|+.+.        .+.+||..+.
T Consensus       108 ~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~--------~i~iwd~~~~  171 (420)
T 3vl1_A          108 QMRRFILGTT-------EGDIKVLDSNFNLQREIDQAH-VSEITKLKFFPSGEALISSSQDM--------QLKIWSVKDG  171 (420)
T ss_dssp             SSCEEEEEET-------TSCEEEECTTSCEEEEETTSS-SSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTC
T ss_pred             CCCEEEEEEC-------CCCEEEEeCCCcceeeecccc-cCccEEEEECCCCCEEEEEeCCC--------eEEEEeCCCC
Confidence            4556666543       246889998877544321111 1111222222 566666666654        7889999876


Q ss_pred             ccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCc----------
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGP----------  292 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~----------  292 (390)
                      ..   -..+..-. ..    -.+++.. +++.++.|+   ....+.+||..+.+-.. +.. ........          
T Consensus       172 ~~---~~~~~~h~-~~----v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~  239 (420)
T 3vl1_A          172 SN---PRTLIGHR-AT----VTDIAIIDRGRNVLSAS---LDGTIRLWECGTGTTIHTFNR-KENPHDGVNSIALFVGTD  239 (420)
T ss_dssp             CC---CEEEECCS-SC----EEEEEEETTTTEEEEEE---TTSCEEEEETTTTEEEEEECB-TTBTTCCEEEEEEEECCC
T ss_pred             cC---ceEEcCCC-Cc----EEEEEEcCCCCEEEEEc---CCCcEEEeECCCCceeEEeec-CCCCCCCccEEEEecCCc
Confidence            51   11221111 11    1233333 555555532   23446788887664222 111 00000000          


Q ss_pred             ------------eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceEEEEE
Q 016368          293 ------------AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERIMVVD  358 (390)
Q Consensus       293 ------------~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d  358 (390)
                                  .++...++++++.|+.++.+..||..+..-.............++... ++. +++.|+.+..+.+||
T Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence                        011114788888998899999999987642221111111112233333 454 777777788999999


Q ss_pred             cCCC
Q 016368          359 VLAS  362 (390)
Q Consensus       359 ~~~~  362 (390)
                      +.+.
T Consensus       320 ~~~~  323 (420)
T 3vl1_A          320 LRSP  323 (420)
T ss_dssp             TTCT
T ss_pred             cCCC
Confidence            9875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.11  E-value=0.12  Score=47.19  Aligned_cols=174  Identities=12%  Similarity=0.029  Sum_probs=102.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.++++.......+.+-  ...-.+++..  ++.||+.--        ....+.++++.+..    -+.+........
T Consensus        53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~--------~~~~I~r~~~~g~~----~~~~~~~~~~~p  118 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV--------TLDRILRANLNGSN----VEEVVSTGLESP  118 (349)
T ss_dssp             SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCS----CEEEECSSCSCC
T ss_pred             cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEec--------cCCceEEEecCCCC----ceEEEeCCCCCc
Confidence            4577888877666543221  1122333433  688998732        33578999998776    555433221111


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEEe-eCCeEEEEeCCC-CcEEEEE
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAASTM-NEEELYVVNEGK-GRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~-~~g~lyv~gg~~-~~v~~yd  316 (390)
                          .+.++  .+++||+.-   .+...+.++++....-+.+.. .+..+   ..+++. .+|.||+..... +.|++++
T Consensus       119 ----~glavd~~~g~ly~~d---~~~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          119 ----GGLAVDWVHDKLYWTD---SGTSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             ----CEEEEETTTTEEEEEE---TTTTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ----cEEEEecCCCeEEEEc---CCCCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCCCCEEEEEe
Confidence                33444  478999982   234568889887654333321 11111   234431 378999998766 7999999


Q ss_pred             CCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +....-+.+.. .......++++-  +++||+.-.....|..+|+...
T Consensus       189 ~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          189 MDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            98654444432 112234456654  7889998555668888887654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.08  E-value=0.075  Score=49.23  Aligned_cols=192  Identities=10%  Similarity=0.033  Sum_probs=99.4

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec-----CCCCCCCCcce-EEEEE-CC-EEEEEeccCCCCCCCccCeEE
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF-----GPQLSIPRRWC-AMGSV-GG-VVYVASGVGAHYRGDVARSMK  217 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~-----~~~~~~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~  217 (390)
                      ++.+++.++.       -..+.+||..++....     +..+....... +++.. ++ .+++.|+.+.        .+.
T Consensus        93 ~~~~l~s~s~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg--------~i~  157 (402)
T 2aq5_A           93 NDNVIASGSE-------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--------VIL  157 (402)
T ss_dssp             CTTEEEEEET-------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS--------CEE
T ss_pred             CCCEEEEEeC-------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC--------EEE
Confidence            3456666643       1468889988775422     11111111112 22222 33 4777776654        688


Q ss_pred             EEECCCCccccccEEccc-CCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecC-CCCCCCCCCceE
Q 016368          218 KWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMP-EGMHAGWNGPAA  294 (390)
Q Consensus       218 ~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~  294 (390)
                      +||..++.    ....-. ......   ..+++.. ++++++.|+   ....+.+||+.+.+-...- . .........+
T Consensus       158 iwd~~~~~----~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~  226 (402)
T 2aq5_A          158 VWDVGTGA----AVLTLGPDVHPDT---IYSVDWSRDGALICTSC---RDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHA  226 (402)
T ss_dssp             EEETTTTE----EEEEECTTTCCSC---EEEEEECTTSSCEEEEE---TTSEEEEEETTTTEEEEEEEC-SSCSSSCCEE
T ss_pred             EEECCCCC----ccEEEecCCCCCc---eEEEEECCCCCEEEEEe---cCCcEEEEeCCCCceeeeecc-CCCCCcceEE
Confidence            99998876    432211 111111   1333332 566555532   2345778999876533221 1 1122112233


Q ss_pred             EEeeCCeEEEEe---CCCCcEEEEECCCCce-EEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCCC
Q 016368          295 STMNEEELYVVN---EGKGRLSKYDADHDWW-DEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       295 ~~~~~g~lyv~g---g~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      +...++++++.|   +.++.+..||..+..- .....+........+...  +..|++.|..+..|.+||+.+..
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            333678888888   6778999999886432 111112222222333333  34555666567789999988763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.08  E-value=0.16  Score=45.82  Aligned_cols=183  Identities=13%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             CCcEEEeCCCC--ceecCCCC------CCCCcce-EEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE
Q 016368          164 ASPLAFNPQSN--TWFFGPQL------SIPRRWC-AMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK  232 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~------~~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~  232 (390)
                      +.+.+||+...  .-..+...      ....... .+++.  ++.|||..++.       ...+.+||+....    -..
T Consensus       112 ~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-------~~~I~~~~~~g~~----~~~  180 (329)
T 3fvz_A          112 HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-------NSRIVQFSPSGKF----VTQ  180 (329)
T ss_dssp             TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-------CCEEEEECTTSCE----EEE
T ss_pred             CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-------CCeEEEEcCCCCE----EEE
Confidence            57889998655  22222211      0111122 34443  57899987532       2378899965443    233


Q ss_pred             cccCCCC------CccccceEEEEE-C-CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEE
Q 016368          233 KAQLKDG------RFSREAVEAVGF-K-GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYV  304 (390)
Q Consensus       233 ~~~~~~~------~~~r~~~~~~~~-~-g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv  304 (390)
                      +......      ... ...++++. + +.+|+..   .+...+.+||+.+++....-.....+.....++. ..+.+|.
T Consensus       181 ~~~~g~~~~~~~~~~~-~p~gia~d~~~g~l~v~d---~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~pg~~~~  255 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFS-VPHSLALVPHLDQLCVAD---RENGRIQCFKTDTKEFVREIKHASFGRNVFAISY-IPGFLFA  255 (329)
T ss_dssp             ECEECCSSSCCTTEES-CEEEEEEETTTTEEEEEE---TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE-ETTEEEE
T ss_pred             eccCCCCCCCCCcccC-CCcEEEEECCCCEEEEEE---CCCCEEEEEECCCCcEEEEEeccccCCCcceeee-cCCEEEE
Confidence            3211110      000 01444443 4 8999983   3456688999987665442210111111112222 2244444


Q ss_pred             EeC-------CCCcEEEEECCCCceEEcc-ccc-ccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          305 VNE-------GKGRLSKYDADHDWWDEVI-ELA-ELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       305 ~gg-------~~~~v~~yd~~~~~W~~i~-~~p-~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..|       ....+.+||..+.+....- ..+ ......+++.. +|.|||....++.|.+|++...
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            444       3448999998877655432 111 22234455554 6789998777779999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.07  E-value=0.058  Score=48.88  Aligned_cols=178  Identities=10%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+||..+.+-...-+.... .-.+++.. ++++++.||.+.        .+.+||..+....  .+....+......
T Consensus        77 g~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~--------~v~iw~~~~~~~~--~~~~~~~~~h~~~  145 (340)
T 1got_B           77 GKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDN--------ICSIYNLKTREGN--VRVSRELAGHTGY  145 (340)
T ss_dssp             TEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTC--------EEEEEETTTCSBS--CEEEEEEECCSSC
T ss_pred             CcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCC--------eEEEEECccCCCc--ceeEEEecCCCcc
Confidence            4688889877643221111111 11122222 566677777654        6788998765310  2222211111000


Q ss_pred             ccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        -.++. .-+++++..+    ....+.+||+.+.+-...-.  .......+++...++.+++.|+.++.+..||..+..
T Consensus       146 --v~~~~~~~~~~l~s~s----~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          146 --LSCCRFLDDNQIVTSS----GDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             --EEEEEEEETTEEEEEE----TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             --EEEEEECCCCcEEEEE----CCCcEEEEECCCCcEEEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence              12222 2356654443    34557789988765332111  011111223323578899999999999999998754


Q ss_pred             eEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          322 WDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       322 W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      -..  .+....... +++.. ++..++.|+.+..+.+||+...
T Consensus       218 ~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          218 CRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            322  222222222 23333 6777788787889999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.06  E-value=0.025  Score=51.44  Aligned_cols=221  Identities=10%  Similarity=0.034  Sum_probs=110.5

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee--cCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ..+.+||..++++..+..+.. ...              ...++..  ++..++.++.       -..+.+||..++++.
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~-h~~--------------~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKE-HNG--------------QVTGVDWAPDSNRIVTCGT-------DRNAYVWTLKGRTWK   87 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEEC-CSS--------------CEEEEEEETTTTEEEEEET-------TSCEEEEEEETTEEE
T ss_pred             CEEEEEeCCCCcEEeeeeecC-CCC--------------cccEEEEeCCCCEEEEEcC-------CCeEEEEECCCCeee
Confidence            357778887776544433332 110              0123322  3456666543       246889999888765


Q ss_pred             cCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCE
Q 016368          178 FGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGN  254 (390)
Q Consensus       178 ~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~  254 (390)
                      ....+....... ++... +++.++.|+.+.        .+.+||..+...   |............ ...+++.. +++
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~d~~~~~~---~~~~~~~~~~~~~-~i~~~~~~~~~~  155 (372)
T 1k8k_C           88 PTLVILRINRAARCVRWAPNEKKFAVGSGSR--------VISICYFEQEND---WWVCKHIKKPIRS-TVLSLDWHPNSV  155 (372)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTS--------SEEEEEEETTTT---EEEEEEECTTCCS-CEEEEEECTTSS
T ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCC--------EEEEEEecCCCc---ceeeeeeecccCC-CeeEEEEcCCCC
Confidence            433222112222 22222 566666666543        567777766541   3333222111110 01223322 566


Q ss_pred             EEEEcccCCCCceeEEEeCCCC---------CeEe-------cCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          255 LCMVNLKGNGAKDGAIYNVELD---------KWKE-------MPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       255 lyv~gg~g~~~~~~~~yd~~~~---------~W~~-------~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                      .++.|+   ....+.+||....         .|..       +.. +. .......++...++..++.++.++.+..||.
T Consensus       156 ~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          156 LLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEEEEc---CCCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            666642   2334678886421         1111       111 11 1111122222247778888888999999999


Q ss_pred             CCCceEEcccccccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          318 DHDWWDEVIELAELKGA-EKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .+.+-.  ..+...... ..+... ++++++.| .++.+.+||+..
T Consensus       232 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          232 DKKMAV--ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GGTTEE--EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCcee--EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            865532  222222222 233333 67776665 677899999887

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.05  E-value=0.14  Score=45.63  Aligned_cols=146  Identities=8%  Similarity=0.063  Sum_probs=76.5

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCC-CccccccEEcc----cCCCCCccccceEEEE-ECCE-EEEEcccCCCCcee
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKS-DREDWKWEKKA----QLKDGRFSREAVEAVG-FKGN-LCMVNLKGNGAKDG  268 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t-~~~~~~W~~~~----~~~~~~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~  268 (390)
                      ..||+.+..+        ..+.+||..+ +.    ...+.    ..+....   ...++. -+++ +|+.+   .....+
T Consensus       141 ~~l~~~~~~~--------~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~pdg~~l~~~~---~~~~~i  202 (343)
T 1ri6_A          141 RTLWVPALKQ--------DRICLFTVSDDGH----LVAQDPAEVTTVEGAG---PRHMVFHPNEQYAYCVN---ELNSSV  202 (343)
T ss_dssp             SEEEEEEGGG--------TEEEEEEECTTSC----EEEEEEEEEECSTTCC---EEEEEECTTSSEEEEEE---TTTTEE
T ss_pred             CEEEEecCCC--------CEEEEEEecCCCc----eeeecccccccCCCCC---cceEEECCCCCEEEEEe---CCCCEE
Confidence            3577665333        3688999987 55    54332    1111111   122332 2454 66663   123457


Q ss_pred             EEEeCC--CCCeEec---CCCCCCC---CCCc-eEEEeeCC-eEEEEeCCCCcEEEEECC--CCceEEccccccccccee
Q 016368          269 AIYNVE--LDKWKEM---PEGMHAG---WNGP-AASTMNEE-ELYVVNEGKGRLSKYDAD--HDWWDEVIELAELKGAEK  336 (390)
Q Consensus       269 ~~yd~~--~~~W~~~---~~~~~~~---~~~~-~~~~~~~g-~lyv~gg~~~~v~~yd~~--~~~W~~i~~~p~~r~~~~  336 (390)
                      .+||..  +.++...   .. .+..   .... .++...+| .||+.+..++.+.+||..  +.+++.+..++.......
T Consensus       203 ~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  281 (343)
T 1ri6_A          203 DVWELKDPHGNIECVQTLDM-MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG  281 (343)
T ss_dssp             EEEESSCTTSCCEEEEEEEC-SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC
T ss_pred             EEEEecCCCCcEEEEeeccc-cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccce
Confidence            788884  3444322   21 2221   1111 23332345 577677677888999887  566777765554333334


Q ss_pred             EEEE-CCE-EEEEeeCCceEEEEEcC
Q 016368          337 ITAA-RGR-VCAVCENGERIMVVDVL  360 (390)
Q Consensus       337 ~~~~-~g~-l~i~g~~~~~v~~~d~~  360 (390)
                      ++.. +|+ ||+.+...+.+.+|++.
T Consensus       282 ~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          282 FNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEc
Confidence            4444 444 66654455677777544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.03  Score=50.91  Aligned_cols=195  Identities=6%  Similarity=-0.006  Sum_probs=102.7

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--G--GVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      +.+++.++.       -..+.+||..+++|..+..+...........+  +  +.+++.|+.+.        .+.+||..
T Consensus        69 ~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--------~i~v~d~~  133 (379)
T 3jrp_A           69 GTILASCSY-------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--------KVSVVEFK  133 (379)
T ss_dssp             CSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS--------EEEEEECC
T ss_pred             CCEEEEecc-------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC--------cEEEEecC
Confidence            456666543       14688999999887665444332222223333  3  56777776654        78889988


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEE--------------CCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCC
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGF--------------KGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMH  286 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--------------~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~  286 (390)
                      +...   ............   ..+++..              ++.+++.|+.   ...+.+||..+..  +..+.. +.
T Consensus       134 ~~~~---~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-~~  203 (379)
T 3jrp_A          134 ENGT---TSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLEST-LE  203 (379)
T ss_dssp             TTSC---CCEEEEECCTTC---EEEEEECCCC----------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEE-EC
T ss_pred             CCCc---eeeEEecCCCCc---eEEEEEcCccccccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEE-Ee
Confidence            7741   111111011100   1222222              3666666422   2346788876543  443332 21


Q ss_pred             C-CCCCceEEEeeC---CeEEEEeCCCCcEEEEECCCCce--EE-cccccccccc-eeEEEE-CCEEEEEeeCCceEEEE
Q 016368          287 A-GWNGPAASTMNE---EELYVVNEGKGRLSKYDADHDWW--DE-VIELAELKGA-EKITAA-RGRVCAVCENGERIMVV  357 (390)
Q Consensus       287 ~-~~~~~~~~~~~~---g~lyv~gg~~~~v~~yd~~~~~W--~~-i~~~p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~  357 (390)
                      . .....+++...+   +.+++.++.++.+..||..+...  .. +......... ..+... +++.++.++.+..+.+|
T Consensus       204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            1 111123332244   78888999999999999887532  11 1111111222 233332 66666666777789999


Q ss_pred             EcCCCCCcceE
Q 016368          358 DVLASPARAWL  368 (390)
Q Consensus       358 d~~~~~~~~W~  368 (390)
                      |+...  ..|.
T Consensus       284 ~~~~~--~~~~  292 (379)
T 3jrp_A          284 KENLE--GKWE  292 (379)
T ss_dssp             EEEET--TEEE
T ss_pred             eCCCC--Cccc
Confidence            98754  2565

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.02  E-value=0.13  Score=48.39  Aligned_cols=186  Identities=8%  Similarity=0.063  Sum_probs=96.0

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      .++..++..++.|+.       -..+.+||..+.+-...-..... .-.+++.. ++..++.|+.+.        .+.+|
T Consensus       274 ~~~~~~~~~l~~~~~-------d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg--------~i~vw  337 (464)
T 3v7d_B          274 RTVSGHGNIVVSGSY-------DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDT--------TIRIW  337 (464)
T ss_dssp             EEEEEETTEEEEEET-------TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTS--------CEEEE
T ss_pred             EEEcCCCCEEEEEeC-------CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCC--------cEEEE
Confidence            344455666666653       24688999887653221111111 11222222 556666666654        68899


Q ss_pred             ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeC
Q 016368          220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNE  299 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  299 (390)
                      |..+..    -  +..+.....   ....+.+++...+.|+   ....+.+||+.+..-.....   .......++...+
T Consensus       338 d~~~~~----~--~~~~~~h~~---~v~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~  402 (464)
T 3v7d_B          338 DLENGE----L--MYTLQGHTA---LVGLLRLSDKFLVSAA---ADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVS  402 (464)
T ss_dssp             ETTTTE----E--EEEECCCSS---CEEEEEECSSEEEEEE---TTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEEC
T ss_pred             ECCCCc----E--EEEEeCCCC---cEEEEEEcCCEEEEEe---CCCcEEEEECCCCceeeeec---CCCCccEEEEEeC
Confidence            998766    2  222211111   2334445666555531   23457789998764222111   1112222232378


Q ss_pred             CeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCce--EEEEE
Q 016368          300 EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGER--IMVVD  358 (390)
Q Consensus       300 g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~--v~~~d  358 (390)
                      +.+++.|+ ++.+..||.++.+-......+.......+...++.+++.+..+..  ++++|
T Consensus       403 ~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          403 DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence            88888877 789999999987655432222222223344446666665544432  34445

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.02  E-value=0.01  Score=55.65  Aligned_cols=179  Identities=11%  Similarity=0.050  Sum_probs=95.3

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      .++.+|+.+++++.+..++....-.+++.. ++++++.++.+.        .+.+||+.++.    ..............
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--------~i~~~d~~~g~----~~~~~~~~~~~~~~  169 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDE--------GMDVLDINSGQ----TVRLSPPEKYKKKL  169 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSS--------SEEEEETTTCC----EEEECCCHHHHTTC
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCC--------eEEEEECCCCe----EeeecCcccccccC
Confidence            688888877766555444333222233333 678888776543        68999999887    44432211100000


Q ss_pred             cceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCC
Q 016368          244 EAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       244 ~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~  320 (390)
                      .....+.+  ++++++.++   ....+.+||+.+.+-...-. . .......++...++ .+|+.+..++.+.+||..+.
T Consensus       170 ~~v~~~~~~~~~~~~~s~~---~d~~v~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQM---QANAVHVFDLKTLAYKATVD-L-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEG---GGTEEEEEETTTCCEEEEEE-C-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CceeEEEEcCCCEEEEEEC---CCCEEEEEECCCceEEEEEc-C-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            01222223  778887742   23457789998765432211 0 11111223322344 56677767889999999877


Q ss_pred             ceEEcccccccccceeEEEE-CC-EEEEEee-------CCceEEEEEcCCC
Q 016368          321 WWDEVIELAELKGAEKITAA-RG-RVCAVCE-------NGERIMVVDVLAS  362 (390)
Q Consensus       321 ~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~-------~~~~v~~~d~~~~  362 (390)
                      +.....  +.......+... +| .|++.+.       .+..+.+||+.+.
T Consensus       245 ~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          245 LEIRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEEEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             cEEEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            553332  222223334443 45 4555432       2458889998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.99  E-value=0.032  Score=50.87  Aligned_cols=231  Identities=15%  Similarity=0.154  Sum_probs=111.4

Q ss_pred             CCceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCc--EEEeCCCC
Q 016368           97 NSSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASP--LAFNPQSN  174 (390)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~--~~~dp~t~  174 (390)
                      +....++.+|+.+++...+..... ....       +       .+..-+++.++++.....   ....+  |.++..++
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~-~~p~-------~-------l~~spdg~~l~~~~~~~~---~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEV-ANPS-------Y-------LIPSADGKFVYSVNEFSK---DQAAVSAFAFDKEKG   87 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEEC-SCCC-------S-------EEECTTSSEEEEEECCSS---TTCEEEEEEEETTTT
T ss_pred             CCCEEEEEEeCCCCCEEEeecccC-CCCc-------e-------EEECCCCCEEEEEEccCC---CCCcEEEEEEeCCCC
Confidence            345667888888888876654311 1110       0       222234555555543211   12345  44566667


Q ss_pred             ceecCCCCCCCCcc-eEEEEECCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-------CCCC-C-ccc
Q 016368          175 TWFFGPQLSIPRRW-CAMGSVGGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-------LKDG-R-FSR  243 (390)
Q Consensus       175 ~W~~~~~~~~~r~~-~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-------~~~~-~-~~r  243 (390)
                      +.+.+...+..-.. ...+. +++ ||+.+..+        ..+.+|+..++..   ...+..       -+.+ + ...
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~--------~~v~~~~~~~~g~---~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT-NGKNIVTANYSG--------GSITVFPIGQDGA---LLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE-CSSEEEEEETTT--------TEEEEEEBCTTSC---BCSCSEEEECCCCCSCTTTCSSC
T ss_pred             cEEEeeEeccCCCCcEEEEE-CCCEEEEEECCC--------CEEEEEEeCCCCc---CcccceeEEccCCCCCccccCCC
Confidence            77665544322222 22333 554 66654322        3678888865431   111110       0100 0 000


Q ss_pred             cceEEEE-ECCE-EEEEcccCCCCceeEEEeCCCCC-------eEec---CC-CCCCCCCCceEEEeeCCe-EEEEeCCC
Q 016368          244 EAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNVELDK-------WKEM---PE-GMHAGWNGPAASTMNEEE-LYVVNEGK  309 (390)
Q Consensus       244 ~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~~~~~-------W~~~---~~-~~~~~~~~~~~~~~~~g~-lyv~gg~~  309 (390)
                      ..++++. -+|+ +|+.+   .+...+.+|+.....       ....   .. ..+.......++...+|+ ||+.+..+
T Consensus       156 ~~~~~~~spdg~~l~~~~---~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADD---LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             CEEEEEECTTSSEEEEEE---TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cceEEEECCCCCEEEEEe---CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            0133333 2565 77763   234556778766443       2111   00 011111112333325665 77777667


Q ss_pred             CcEEEEECCCCceEEcccccccc----cceeEEEE-CCE-EEEEeeC-CceEEEEEcC
Q 016368          310 GRLSKYDADHDWWDEVIELAELK----GAEKITAA-RGR-VCAVCEN-GERIMVVDVL  360 (390)
Q Consensus       310 ~~v~~yd~~~~~W~~i~~~p~~r----~~~~~~~~-~g~-l~i~g~~-~~~v~~~d~~  360 (390)
                      +.+.+||..+.....+..++...    ....++.. +|+ ||+.... .+.+.+||+.
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            88999998877776655433221    12234433 554 6666555 5678888885

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.99  E-value=0.16  Score=45.93  Aligned_cols=135  Identities=10%  Similarity=0.061  Sum_probs=74.4

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA  293 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~  293 (390)
                      .+.+||..++.    -...-.-....    ..+++. -++++++.|+   ....+.+||+.+..-...-.  .......+
T Consensus       165 ~i~~wd~~~~~----~~~~~~~h~~~----v~~~~~~~~~~~l~sg~---~d~~v~~wd~~~~~~~~~~~--~h~~~v~~  231 (340)
T 1got_B          165 TCALWDIETGQ----QTTTFTGHTGD----VMSLSLAPDTRLFVSGA---CDASAKLWDVREGMCRQTFT--GHESDINA  231 (340)
T ss_dssp             CEEEEETTTTE----EEEEECCCSSC----EEEEEECTTSSEEEEEE---TTSCEEEEETTTCSEEEEEC--CCSSCEEE
T ss_pred             cEEEEECCCCc----EEEEEcCCCCc----eEEEEECCCCCEEEEEe---CCCcEEEEECCCCeeEEEEc--CCcCCEEE
Confidence            68899998876    32211111111    122332 2566666642   23457789987764322111  01111122


Q ss_pred             EEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          294 ASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       294 ~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++...++.+++.|+.++.+..||..+..-......+...... ++... +|++++.|+.+..+.+||+.+.
T Consensus       232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence            332357889999999999999999875432211111111122 22222 6788888888889999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.99  E-value=0.11  Score=46.67  Aligned_cols=173  Identities=10%  Similarity=0.029  Sum_probs=94.3

Q ss_pred             CCcEEEeCCCCceec-CCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++-.. +...+.  ...+++.. +++.++.|+.+.        .+.+||..+..    -...-..... .
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~g~~dg--------~v~i~~~~~~~----~~~~~~~~~~-~  166 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQYLATGTHVG--------KVNIFGVESGK----KEYSLDTRGK-F  166 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSSEEEEECTTS--------EEEEEETTTCS----EEEEEECSSS-C
T ss_pred             CcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCCEEEEEcCCC--------cEEEEEcCCCc----eeEEecCCCc-e
Confidence            468889988775322 111111  11122222 566666666543        67889988776    2211111111 1


Q ss_pred             cccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                         ..+++. -+++..+.|+   ....+.+||..+.+-.. +..   ......+++...++.+++.|+.++.+..||..+
T Consensus       167 ---v~~~~~spdg~~lasg~---~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          167 ---ILSIAYSPDGKYLASGA---IDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             ---EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECC---CSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             ---EEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence               122222 3666666642   23457789988764322 221   111122333335788999999999999999986


Q ss_pred             CceEEccccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....  ..+........ ++.. ++..++.|+.+..|.+||+.+.
T Consensus       238 ~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          238 ANLA--GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccee--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            5533  22222222222 3332 6677777777889999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.98  E-value=0.059  Score=48.49  Aligned_cols=171  Identities=8%  Similarity=0.039  Sum_probs=90.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE-EcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE-KKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~-~~~~~~~~~~  241 (390)
                      ..+.+||..+++-...-.. ....-.+++.. +++.++.|+.+.        .+.+||..+..    -. .+.. .....
T Consensus       144 g~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~lasg~~dg--------~i~iwd~~~~~----~~~~~~~-h~~~v  209 (321)
T 3ow8_A          144 GKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDGKYLASGAIDG--------IINIFDIATGK----LLHTLEG-HAMPI  209 (321)
T ss_dssp             SEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE----EEEEECC-CSSCC
T ss_pred             CcEEEEEcCCCceeEEecC-CCceEEEEEECCCCCEEEEEcCCC--------eEEEEECCCCc----EEEEEcc-cCCce
Confidence            4677888876643211000 01111122222 567777776654        68899998876    22 1211 11111


Q ss_pred             cccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC
Q 016368          242 SREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       242 ~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~  320 (390)
                          .+++. -++++++.|+   ....+.+||..+......-.  ........++...++..++.++.++.+..||..+.
T Consensus       210 ----~~l~~spd~~~l~s~s---~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          210 ----RSLTFSPDSQLLVTAS---DDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ----CEEEECTTSCEEEEEC---TTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ----eEEEEcCCCCEEEEEc---CCCeEEEEECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence                22332 3666666641   23457789988765432211  01111112232247888889999999999999865


Q ss_pred             ceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          321 WWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       321 ~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      +-  +..+....... ++... ++..++.++.+..|.+||.
T Consensus       281 ~~--~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          281 TC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EE--EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EE--EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            43  33332222222 33333 5666666677778999985

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.97  E-value=0.00039  Score=63.48  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             cCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCC
Q 016368           31 LLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFP   71 (390)
Q Consensus        31 ~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~   71 (390)
                      ...|..||+|++.+||.+|+   +.+++.|||+|+.+..++...
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~   49 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhh
Confidence            45578899999999999999   778889999999999887754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.97  E-value=0.073  Score=49.90  Aligned_cols=186  Identities=7%  Similarity=-0.054  Sum_probs=101.9

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ..++.+|..+++...+...+. .. .               ..... ++..+++.+...    ....+++||..+++...
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~-~~-~---------------~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~  261 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR-HN-G---------------APAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQ  261 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS-CE-E---------------EEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEE
T ss_pred             cEEEEEECCCCcEEEeecCCC-cc-c---------------CEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEe
Confidence            468889988877665543332 11 0               22222 344444333211    12469999999988766


Q ss_pred             CCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEE
Q 016368          179 GPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLC  256 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~ly  256 (390)
                      +.....  .....+.. +++.+++++...     ....++++|..++.    -+.+.....  .   ....+. -+|+..
T Consensus       262 l~~~~~--~~~~~~~spdg~~l~~~s~~~-----g~~~i~~~d~~~~~----~~~l~~~~~--~---~~~~~~spdG~~l  325 (415)
T 2hqs_A          262 VTDGRS--NNTEPTWFPDSQNLAFTSDQA-----GRPQVYKVNINGGA----PQRITWEGS--Q---NQDADVSSDGKFM  325 (415)
T ss_dssp             CCCCSS--CEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTSSC----CEECCCSSS--E---EEEEEECTTSSEE
T ss_pred             CcCCCC--cccceEECCCCCEEEEEECCC-----CCcEEEEEECCCCC----EEEEecCCC--c---ccCeEECCCCCEE
Confidence            654321  11122222 555444443321     23478999998877    555433211  1   122222 366655


Q ss_pred             EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC---cEEEEECCCCceEEcc
Q 016368          257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG---RLSKYDADHDWWDEVI  326 (390)
Q Consensus       257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~---~v~~yd~~~~~W~~i~  326 (390)
                      +++....+...+.++|+.+++...+.. .  . .....+...+|+.+++++.++   .++.+|..+.....+.
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~~~l~~-~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGVQVLSS-T--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEECCC-S--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             EEEECcCCceEEEEEECCCCCEEEecC-C--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            554332234567899999988876655 2  1 222333335788777766444   7999999877666654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.96  E-value=0.084  Score=45.76  Aligned_cols=220  Identities=9%  Similarity=-0.024  Sum_probs=109.4

Q ss_pred             CceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCC-Cc
Q 016368           98 SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQS-NT  175 (390)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t-~~  175 (390)
                      ....++.+|+.+++...+.....  ...               ..... ++..+++++        -..+++||..+ ++
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~--~v~---------------~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPE--LFE---------------APNWSPDGKYLLLNS--------EGLLYRLSLAGDPS   74 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESS--CCE---------------EEEECTTSSEEEEEE--------TTEEEEEESSSCCS
T ss_pred             cceeEEEEeCCCCceeeeccCCc--ceE---------------eeEECCCCCEEEEEc--------CCeEEEEeCCCCCC
Confidence            34568889998877655433222  100               22222 345555542        14799999998 77


Q ss_pred             eecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECC
Q 016368          176 WFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKG  253 (390)
Q Consensus       176 W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g  253 (390)
                      ...+........-..++. -+++.+++++...    .....++.+|..+..    -+.+.....      ....+. -++
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~~~~~~~------~~~~~~spdg  140 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVE----FGKSAIYLLPSTGGT----PRLMTKNLP------SYWHGWSPDG  140 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTT----TSSCEEEEEETTCCC----CEECCSSSS------EEEEEECTTS
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCC----CCcceEEEEECCCCc----eEEeecCCC------ccceEECCCC
Confidence            666543332111122222 2566555555332    134578888888777    555543321      122232 255


Q ss_pred             E-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCC--cEEEEECCCCceEEccccc
Q 016368          254 N-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKG--RLSKYDADHDWWDEVIELA  329 (390)
Q Consensus       254 ~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~--~v~~yd~~~~~W~~i~~~p  329 (390)
                      + +++.+.. .+...++.+|..+.....+.. ...  ....+....+|+.+++.+ .++  .+|.++..+.....+....
T Consensus       141 ~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          141 KSFTYCGIR-DQVFDIYSMDIDSGVETRLTH-GEG--RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             SEEEEEEEE-TTEEEEEEEETTTCCEEECCC-SSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             CEEEEEECC-CCceEEEEEECCCCcceEccc-CCC--ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence            5 4433211 112234456677776665544 211  112233224666444443 344  7788887776666654322


Q ss_pred             ccccceeEEEE-CCE-EEEEeeCC----------ceEEEEEcCCC
Q 016368          330 ELKGAEKITAA-RGR-VCAVCENG----------ERIMVVDVLAS  362 (390)
Q Consensus       330 ~~r~~~~~~~~-~g~-l~i~g~~~----------~~v~~~d~~~~  362 (390)
                        .....+... +|+ |++.+..+          ..++++|+.+.
T Consensus       217 --~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          217 --YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             --cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence              111222222 455 44443321          46899998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.95  E-value=0.094  Score=48.76  Aligned_cols=174  Identities=13%  Similarity=0.039  Sum_probs=101.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.++++.......+...  ...-.+++..  ++.||+.--        ....+.++++....    .+.+........
T Consensus        96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~--------~~~~I~r~~~~g~~----~~~~~~~~~~~p  161 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV--------TLDRILRANLNGSN----VEEVVSTGLESP  161 (386)
T ss_dssp             SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCC----EEEEECSSCSCC
T ss_pred             ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeC--------CCCcEEEEecCCCC----cEEEEeCCCCCc
Confidence            4678888877665543221  1122334443  578998732        33578999998776    555433221111


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeCCC-CcEEEEE
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNEGK-GRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg~~-~~v~~yd  316 (390)
                          .+.++  .+++||+.-   .+...+.++++....-+.+..   .....+ .+++ ..+|.||+..... +.|++++
T Consensus       162 ----~glavd~~~g~lY~~d---~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          162 ----GGLAVDWVHDKLYWTD---SGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             ----CCEEEETTTTEEEEEE---TTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ----cEEEEEeCCCeEEEEc---CCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence                23343  478999982   234567788887554333222   111122 3343 1378999988665 7999999


Q ss_pred             CCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +....-+.+.. .......++++-  +++||+.-.....|+.+|+...
T Consensus       232 ~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          232 MDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             TTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            98654443322 112233456653  7889998555668888887654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.93  E-value=0.00018  Score=63.52  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             CCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCC
Q 016368           34 LPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPY   69 (390)
Q Consensus        34 ~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~   69 (390)
                      +..||+|++..||++|+   ++++.+|||+||.++.++.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~   43 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI   43 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccch
Confidence            45799999999999998   9999999999999999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.90  E-value=0.031  Score=49.36  Aligned_cols=180  Identities=9%  Similarity=0.041  Sum_probs=98.3

Q ss_pred             CCcEEEeCCCCc--eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNT--WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.++|+.+++  |+.-..-. ...+.....-+|+|++.+          .+.+..||+ +++.  .|+.-......  
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~----------~~~V~~~d~-~G~~--~W~~~~~~~~~--   78 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY----------SKGAKMITR-DGRE--LWNIAAPAGCE--   78 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC----------BSEEEEECT-TSCE--EEEEECCTTCE--
T ss_pred             CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC----------CCCEEEECC-CCCE--EEEEcCCCCcc--
Confidence            578888987774  55422110 122222333378888832          136889999 5542  37644321111  


Q ss_pred             cccceE-EEEECCEEEEEcccCCCCceeEEEeCCCC-CeEec-CCCCCC--CCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          242 SREAVE-AVGFKGNLCMVNLKGNGAKDGAIYNVELD-KWKEM-PEGMHA--GWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~-~~~~~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~-~~~~~~--~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                         .++ ....+|++++....  ....+..+|++.+ .|+.. ......  ........ ..+|.+++....++.+..||
T Consensus        79 ---~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~-~~~G~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           79 ---MQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK-NKKGNYLVPLFATSEVREIA  152 (276)
T ss_dssp             ---EEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE-CTTSCEEEEETTTTEEEEEC
T ss_pred             ---ccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE-CCCCCEEEEecCCCEEEEEC
Confidence               122 23347777776311  1345667787544 34432 111111  11111222 26888888887788999999


Q ss_pred             CCCC-ceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368          317 ADHD-WWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       317 ~~~~-~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~  370 (390)
                      ++.+ .|+.-..    ...++.... +|.++|.+..+..++.+|+.+.. ..|+..
T Consensus       153 ~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-~~w~~~  203 (276)
T 3no2_A          153 PNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-IVRRVN  203 (276)
T ss_dssp             TTSCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC-EEEEEE
T ss_pred             CCCCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-EEEEec
Confidence            9833 2654332    122334444 78888887777789999988542 258864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.88  E-value=0.16  Score=45.70  Aligned_cols=64  Identities=13%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             eC--CeEEEEeCCCCcEEEEECCCCceE--Eccccccc--ccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          298 NE--EELYVVNEGKGRLSKYDADHDWWD--EVIELAEL--KGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       298 ~~--g~lyv~gg~~~~v~~yd~~~~~W~--~i~~~p~~--r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .+  +.+++.|+.++.+..||..+..-.  .+..+...  .... .+... ++++++.++.+..|.+||+.+
T Consensus       295 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          295 MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            56  889999999999999999876421  22223222  1222 23333 677777777788999999753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.88  E-value=0.12  Score=52.64  Aligned_cols=188  Identities=5%  Similarity=-0.018  Sum_probs=98.0

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ++..+++++.       -..+.+||..+++....-... ...-.+++.. ++..++.|+.+.        .+.+||..++
T Consensus        66 ~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~  129 (814)
T 3mkq_A           66 RKNWIIVGSD-------DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWENN  129 (814)
T ss_dssp             GGTEEEEEET-------TSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTS--------EEEEEEGGGT
T ss_pred             CCCEEEEEeC-------CCeEEEEECCCCcEEEEEecC-CCCEEEEEEeCCCCEEEEEcCCC--------EEEEEECCCC
Confidence            3455565543       246889998887653321111 1111122222 455555665543        7889998876


Q ss_pred             ccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee--CC
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN--EE  300 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~g  300 (390)
                      .     .....+......  ..+++..  ++..++.|+   ....+.+||..+.+-..... .........++...  ++
T Consensus       130 ~-----~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          130 W-----ALEQTFEGHEHF--VMCVAFNPKDPSTFASGC---LDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             S-----EEEEEEECCSSC--EEEEEEETTEEEEEEEEE---TTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECCSTTC
T ss_pred             c-----eEEEEEcCCCCc--EEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEECCCC
Confidence            2     222222111110  1333333  455565531   23457789986553221111 11111222333213  78


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+++.|+.++.+..||..+..-  +..+........ +... ++.+++.|+.++.+.+||+.+.
T Consensus       199 ~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          199 PYMITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             CEEEEECTTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEeCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            8899999999999999886542  332322222233 3332 5667777777778999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.88  E-value=0.066  Score=48.07  Aligned_cols=183  Identities=11%  Similarity=0.093  Sum_probs=97.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~  241 (390)
                      ..+++||+.+++.+.+.... ...-.+++.. ++++|+......    .....+.+||+.++.    -+. +........
T Consensus        66 ~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~----~~~~~i~~~d~~~~~----~~~~~~~~~~~~~  136 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENGDN----LQDIIEDLSTAYC  136 (333)
T ss_dssp             CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTSCS----CEEEECSSSSCCC
T ss_pred             CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCC----CCCceEEEEeCCCCE----EEEEEccCccCCc
Confidence            57999999988876543111 1112233332 678888754331    123478999999887    542 222111111


Q ss_pred             cccceEEEE-ECCEEEEEcccC---CCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEE
Q 016368          242 SREAVEAVG-FKGNLCMVNLKG---NGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~-~~g~lyv~gg~g---~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd  316 (390)
                         ...+++ -+|++|+....+   .....+..+|+.+++...+.....   ....++...+| .||+.....+.+++||
T Consensus       137 ---~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          137 ---IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             ---EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ---ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECCCCCEEEEEeCCCCeEEEEE
Confidence               133333 367888864211   012346678887766655432111   11233322455 4888776667899999


Q ss_pred             CCCC--ceEEcc-----cccccccceeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          317 ADHD--WWDEVI-----ELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       317 ~~~~--~W~~i~-----~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..++  ....+.     ..+......+++.- +|.||+....++.|.+||+..
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence            8642  333221     11111122334443 678888765566888888743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.87  E-value=0.29  Score=45.60  Aligned_cols=176  Identities=11%  Similarity=-0.002  Sum_probs=100.5

Q ss_pred             CCcEEEeCCCCc----eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          164 ASPLAFNPQSNT----WFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       164 ~~~~~~dp~t~~----W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ..++++++....    ...+.... ...-.++++.  ++.||+.-..        ...++++|+....    -+.+....
T Consensus       134 ~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD~~~~~lY~~d~~--------~~~I~~~~~~g~~----~~~l~~~~  200 (400)
T 3p5b_L          134 RMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSV--------LGTVSVADTKGVK----RKTLFREN  200 (400)
T ss_dssp             TEEEEEEC------CCCEEEECSS-CSCEEEEEEETTTTEEEEEETT--------TTEEEEECTTTCS----EEEEEECS
T ss_pred             CeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEEecCCceEEEECC--------CCeEEEEeCCCCc----eEEEEeCC
Confidence            568888876521    12111100 1112234443  7899998432        3478899988765    44443211


Q ss_pred             CCCccccceEEEE--ECCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEe-eCCeEEEEeCCCCcE
Q 016368          238 DGRFSREAVEAVG--FKGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHAGWNGP-AASTM-NEEELYVVNEGKGRL  312 (390)
Q Consensus       238 ~~~~~r~~~~~~~--~~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~g~lyv~gg~~~~v  312 (390)
                      ...    ..++++  .+|.||+.-   .+ ...++++++....=+.+..   .....+ ++++. .+++||+.....+.|
T Consensus       201 ~~~----P~~iavdp~~g~ly~td---~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          201 GSK----PRAIVVDPVHGFMYWTD---WGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             SCC----EEEEEEETTTTEEEEEE---CSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCC----cceEEEecccCeEEEEe---CCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            111    134454  378999983   12 2467888886543222211   111122 34431 368999999888899


Q ss_pred             EEEECCCCceEEcccc-cccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIEL-AELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~-p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++|.....-..+... ......+++++.++.||+.-..++.|+.+|..+.
T Consensus       271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             EEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             EEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence            9999986544444322 1234556888899999998666778999996554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.042  Score=56.01  Aligned_cols=182  Identities=11%  Similarity=-0.010  Sum_probs=101.9

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--G--GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||...+++..+..+........+..+  +  +.+++.|+.++        .+.+||..++.    |..+..+...
T Consensus        31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg--------~I~vwd~~~~~----~~~~~~~~~h   98 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKEENGR----WSQIAVHAVH   98 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS--------CEEEEEEETTE----EEEEEEECCC
T ss_pred             CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC--------eEEEEECCCCc----ccccccccCC
Confidence            4688888877666655444332222223333  3  66777777664        68899999987    7766554322


Q ss_pred             CccccceEEEEE-C--CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-------------CCeEE
Q 016368          240 RFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-------------EEELY  303 (390)
Q Consensus       240 ~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-------------~g~ly  303 (390)
                      ...  ..+++.. +  +.+++.|+   ....+.+||..+..-..............++....             ++.++
T Consensus        99 ~~~--V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l  173 (753)
T 3jro_A           99 SAS--VNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (753)
T ss_dssp             SSC--EEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred             CCC--eEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence            211  1233332 2  55666642   23457788887652111110000111111222111             47888


Q ss_pred             EEeCCCCcEEEEECCCC--ceEEcccccccccceeEEEE--C---CEEEEEeeCCceEEEEEcCCC
Q 016368          304 VVNEGKGRLSKYDADHD--WWDEVIELAELKGAEKITAA--R---GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~--~W~~i~~~p~~r~~~~~~~~--~---g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+.++.+..||..+.  .+..+..+...........+  +   +.+++.|+.++.|.+||+.+.
T Consensus       174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            88888999999987654  34544444433333333333  4   678888787889999998774

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.80  E-value=0.056  Score=54.55  Aligned_cols=176  Identities=11%  Similarity=0.028  Sum_probs=98.0

Q ss_pred             CCCcEEEeCCCC----ceec-CC-CCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc
Q 016368          163 LASPLAFNPQSN----TWFF-GP-QLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA  234 (390)
Q Consensus       163 ~~~~~~~dp~t~----~W~~-~~-~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~  234 (390)
                      ...|+++++.+.    .-.. +. .+..|   .++++  .++.||+.-.        ....+.++++....    -+.+.
T Consensus       427 ~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~--------~~~~I~v~d~dg~~----~~~l~  491 (699)
T 1n7d_A          427 QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVK----RKTLF  491 (699)
T ss_dssp             TTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCT--------TTSCEEEEBSSSCC----EEEEC
T ss_pred             CCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEec--------cCCeEEEEecCCCc----eEEEE
Confidence            357888888751    1111 11 11112   22333  3678998632        33578899987765    33332


Q ss_pred             cCCCCCccccceEEEE--ECCEEEEEcccCCCC-ceeEEEeCCCCCeEecCCCCCCCCCCceEEEe-eCCeEEEEeCCCC
Q 016368          235 QLKDGRFSREAVEAVG--FKGNLCMVNLKGNGA-KDGAIYNVELDKWKEMPEGMHAGWNGPAASTM-NEEELYVVNEGKG  310 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~-~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~g~lyv~gg~~~  310 (390)
                      ......    ..++++  .++.||+..   .+. ..++++++....-+.+.. .... .-.++++. .+++||+.....+
T Consensus       492 ~~~~~~----P~giavDp~~g~ly~td---~~~~~~I~~~~~dG~~~~~l~~-~~l~-~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          492 REQGSK----PRAIVVDPVHGFMYWTD---WGTPAKIKKGGLNGVDIYSLVT-ENIQ-WPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             CCSSCC----CCCEECCSSSSCCEECC---CSSSCCEEBCCSSSCCCCEESC-SSCS-SCCCEEECTTTCCEEEEETTTT
T ss_pred             eCCCCC----cceEEEccCCCcEEEcc---cCCCCeEEEEeCCCCCeeEEEe-CCCC-CccEEEEeccCCEEEEEecCCC
Confidence            211111    123343  368899872   222 456677765443332221 1111 11234431 3589999998888


Q ss_pred             cEEEEECCCCceEEcccc-cccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIEL-AELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~-p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .|+++|+....-+.+... ......+++++.++.||+.-..++.|.++|..+.
T Consensus       563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             EEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             eEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            999999976544444332 2233456788888999998666778999997643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.76  E-value=0.14  Score=45.85  Aligned_cols=187  Identities=10%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             cCe-EEEEEeecCCCCCCCCCcEEEeC-CCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNN-LVLIAATTPHFLPALASPLAFNP-QSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~-l~~~gG~~~~~~~~~~~~~~~dp-~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++. .++.|+.       -..+.+||. .+++...+........-.+++...+.+++.|+.+.        .+.+||..+
T Consensus        67 ~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~--------~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTV-------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG--------LIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEET-------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS--------EEEEECHHH
T ss_pred             CCCcEEEEEcC-------CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCC--------eEEEEcccc
Confidence            455 5665543       247899999 88876655441111111233333355566666553        678888776


Q ss_pred             ---------CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCC-CC--eEecCCCCCCCCCC
Q 016368          224 ---------DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVEL-DK--WKEMPEGMHAGWNG  291 (390)
Q Consensus       224 ---------~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~-~~--W~~~~~~~~~~~~~  291 (390)
                               ..      .+..+.....   ..+++...+.+++.+    ....+.+||..+ ..  ......  ......
T Consensus       132 ~~~~~~~~~~~------~~~~~~~~~~---v~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i  196 (342)
T 1yfq_A          132 YGDGVIAVKNL------NSNNTKVKNK---IFTMDTNSSRLIVGM----NNSQVQWFRLPLCEDDNGTIEES--GLKYQI  196 (342)
T ss_dssp             HTTBCEEEEES------CSSSSSSCCC---EEEEEECSSEEEEEE----STTEEEEEESSCCTTCCCEEEEC--SCSSCE
T ss_pred             cccccccccCC------eeeEEeeCCc---eEEEEecCCcEEEEe----CCCeEEEEECCccccccceeeec--CCCCce
Confidence                     33      1112221111   234444455544332    334677899887 33  222221  111111


Q ss_pred             ceEEEee-CCeEEEEeCCCCcEEEEECCCC--c--eEEcccccccc---------ccee-EEEE-CCEEEEEeeCCceEE
Q 016368          292 PAASTMN-EEELYVVNEGKGRLSKYDADHD--W--WDEVIELAELK---------GAEK-ITAA-RGRVCAVCENGERIM  355 (390)
Q Consensus       292 ~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~--~--W~~i~~~p~~r---------~~~~-~~~~-~g~l~i~g~~~~~v~  355 (390)
                      ..++... ++.+++.++.++.+..||....  .  ...+..+....         .... +... ++++++.|+.+..|.
T Consensus       197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            2333323 6888899988888888776644  1  11111111111         1222 3332 567677777777999


Q ss_pred             EEEcCCC
Q 016368          356 VVDVLAS  362 (390)
Q Consensus       356 ~~d~~~~  362 (390)
                      +||+.+.
T Consensus       277 vwd~~~~  283 (342)
T 1yfq_A          277 CWNLQTR  283 (342)
T ss_dssp             EEETTTT
T ss_pred             EEcCccH
Confidence            9999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.76  E-value=0.027  Score=51.57  Aligned_cols=182  Identities=11%  Similarity=0.034  Sum_probs=91.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..++.|+.+..+...........+  ++++++.|+.+.        .+.+||..++..   |.....+.....
T Consensus        33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~--------~v~vwd~~~~~~---~~~~~~~~~~~~  101 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR--------NAYVYEKRPDGT---WKQTLVLLRLNR  101 (377)
T ss_dssp             SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS--------SEEEC------C---CCCEEECCCCSS
T ss_pred             CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC--------eEEEEEcCCCCc---eeeeeEecccCC
Confidence            4688899999888777666543333333333  566777776654        678888876541   333322221111


Q ss_pred             cccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCC-eEecCCCCCC--CCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          242 SREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEGMHA--GWNGPAASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~~~~--~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                      .  ..+++.. +++.++.|+   ....+.+||..+.+ |..... +..  ......++...++++++.++.++.+..||.
T Consensus       102 ~--v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  175 (377)
T 3dwl_C          102 A--ATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKH-LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSA  175 (377)
T ss_dssp             C--EEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEE-ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEE
T ss_pred             c--eEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeE-eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEE
Confidence            0  1222222 455555532   23446788887664 433332 211  111222332247888889988999999998


Q ss_pred             CCCce----------------EEccccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCCC
Q 016368          318 DHDWW----------------DEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       318 ~~~~W----------------~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .+...                ..+..+ ....... +... ++++++.|+.+..|.+||+.+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            64331                122222 1122222 3322 67777777777899999988763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.75  E-value=0.023  Score=52.07  Aligned_cols=186  Identities=6%  Similarity=0.011  Sum_probs=94.3

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-C-CEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-G-GVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      ++..++.|+.       -..+.+||..+++-...  +...... .+++.. + ..+++.++.+.        .+.+||..
T Consensus       150 dg~~l~sgs~-------dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg--------~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGK-------DFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGEDG--------RILLWDTR  212 (357)
T ss_dssp             SSSEEEEEET-------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETTS--------CEEECCTT
T ss_pred             CCCEEEEEeC-------CCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccCC--------ceEEEECC
Confidence            3455555543       23688899988754321  1111111 122222 3 34667776654        67889988


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCCCCCCCCCceEEEeeC
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEGMHAGWNGPAASTMNE  299 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~  299 (390)
                      +..    -...........  ...+++..  ++.+++.|+   ....+.+||+.+.+-. .+..   .......++...+
T Consensus       213 ~~~----~~~~~~~~~~~~--~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~  280 (357)
T 4g56_B          213 KPK----PATRIDFCASDT--IPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYH  280 (357)
T ss_dssp             SSS----CBCBCCCTTCCS--CEEEEEECTTSTTEEEEEE---SSSCEEEEESSCGGGCEEECC---CSSCEEEEEECSS
T ss_pred             CCc----eeeeeeeccccc--cccchhhhhcccceEEEee---cccceeEEECCCCcEeEEEec---cceeEEEEEEcCC
Confidence            766    322222111111  01223322  356666642   2234678998765311 1111   1111122332234


Q ss_pred             C-eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          300 E-ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       300 g-~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      + ++++.|+.++.+.+||..+.+-...  +.......+++..  ++.+++.++.+..|.+||+.++
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            4 5667788889999999987653322  2211122233332  5777777777889999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.75  E-value=0.03  Score=50.42  Aligned_cols=148  Identities=9%  Similarity=0.073  Sum_probs=84.4

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccC-CCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKG-NGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g-~~~~~~~~yd  272 (390)
                      +++||+.+...        ..+.+||+.++.    .+.+.......    ..+++. -+|++|+....+ .....+.+||
T Consensus        55 ~g~l~~~~~~~--------~~i~~~d~~~~~----~~~~~~~~~~~----~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           55 QGQLFLLDVFE--------GNIFKINPETKE----IKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             TSCEEEEETTT--------CEEEEECTTTCC----EEEEEECSSSS----EEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             CCCEEEEECCC--------CEEEEEeCCCCc----EEEEeeCCCCC----cceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            57788876543        378999999888    66543211111    133443 377888874111 0113577899


Q ss_pred             CCCCCeEe-cCCCCCCCCCCceEEEeeCCeEEEEeCC------CCcEEEEECCCCceEEcccccccccceeEEEE-CC-E
Q 016368          273 VELDKWKE-MPEGMHAGWNGPAASTMNEEELYVVNEG------KGRLSKYDADHDWWDEVIELAELKGAEKITAA-RG-R  343 (390)
Q Consensus       273 ~~~~~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg~------~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g-~  343 (390)
                      ++++.... +.. .........+++..+|++|+....      .+.+++||+++.+...+..  ......+++.. +| .
T Consensus       119 ~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          119 ENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKV  195 (333)
T ss_dssp             TTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSE
T ss_pred             CCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCE
Confidence            98887653 222 111111223333347889887643      3489999998776665432  11122344443 44 4


Q ss_pred             EEEEeeCCceEEEEEcCC
Q 016368          344 VCAVCENGERIMVVDVLA  361 (390)
Q Consensus       344 l~i~g~~~~~v~~~d~~~  361 (390)
                      ||+.....+.+++||+.+
T Consensus       196 l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          196 LWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEEEGGGTEEEEEEECT
T ss_pred             EEEEeCCCCeEEEEEecC
Confidence            777755566888898854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.75  E-value=0.36  Score=44.91  Aligned_cols=188  Identities=11%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      .++++.+|-.        +.|++||..+++...+-.+......-.++.+  +++.++.|+.+.        .+.+||..+
T Consensus       115 ~~n~lAvgld--------~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg--------~v~iWd~~~  178 (420)
T 4gga_A          115 SGNVLAVALD--------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDVQQ  178 (420)
T ss_dssp             TTSEEEEEET--------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEEeC--------CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC--------eEEEEEcCC
Confidence            4566655531        4799999999977655443332222223333  567777777664        788999988


Q ss_pred             CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEE
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELY  303 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~ly  303 (390)
                      +.    -.........     ...+...++.+.+.|+   .......+|........... .........+....++..+
T Consensus       179 ~~----~~~~~~~h~~-----~v~~~s~~~~~l~sgs---~d~~i~~~d~~~~~~~~~~~-~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          179 QK----RLRNMTSHSA-----RVGSLSWNSYILSSGS---RSGHIHHHDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             TE----EEEEECCCSS-----CEEEEEEETTEEEEEE---TTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEE
T ss_pred             Cc----EEEEEeCCCC-----ceEEEeeCCCEEEEEe---CCCceeEeeecccceeeEEe-cccccceeeeeecCCCCee
Confidence            76    2221111111     2334456677666642   23445677776543322111 0011111122223578888


Q ss_pred             EEeCCCCcEEEEECCCCc--eEEccccccccccee-EEE--ECCEEEEEee--CCceEEEEEcCCC
Q 016368          304 VVNEGKGRLSKYDADHDW--WDEVIELAELKGAEK-ITA--ARGRVCAVCE--NGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~-~~~--~~g~l~i~g~--~~~~v~~~d~~~~  362 (390)
                      +.++.++.+..||..+..  +..+........... ++.  .+..+++.++  .+..|.+||+.+.
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            888889999999887643  222222222222222 222  2445555543  3567889998775

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.74  E-value=0.05  Score=49.45  Aligned_cols=190  Identities=14%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCC--CCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI--PRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      ++.+++.++..       ..+.+||..+++|.....+..  ...-.+++.. +++.++.|+.+.        .+.+||..
T Consensus        27 ~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~   91 (345)
T 3fm0_A           27 AGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKN   91 (345)
T ss_dssp             TSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEEC
T ss_pred             CCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEcc
Confidence            34555555432       357888888877643221111  1111122222 566777777654        57788887


Q ss_pred             CCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCC-CCCCCceEEEeeC
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMH-AGWNGPAASTMNE  299 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~-~~~~~~~~~~~~~  299 (390)
                      ++.    ++.+..+......  -.+++.. ++++.+.|+   ....+.+||..+. .+..+.. .. .......++...+
T Consensus        92 ~~~----~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           92 QDD----FECVTTLEGHENE--VKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             CC-----EEEEEEECCCSSC--EEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECSS
T ss_pred             CCC----eEEEEEccCCCCC--ceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECCC
Confidence            776    6554443221110  1223322 566665542   2345678887654 3332222 11 1111112222357


Q ss_pred             CeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcC
Q 016368          300 EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       300 g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~  360 (390)
                      +.+++.|+.++.+..||..+..|..+..+.........+.+  +|+.++.|+.+..|.+||..
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            88888898999999999988888766655444333333333  67777777777788888863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.71  E-value=0.39  Score=44.69  Aligned_cols=184  Identities=10%  Similarity=0.067  Sum_probs=92.4

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      +.+++.|+..       ..+.+||..+.+-..  .+......-.++.+  ++..++.|+.+.        .+.+||..++
T Consensus       162 ~~~l~sgs~D-------~~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D~--------~i~~wd~~~~  224 (410)
T 1vyh_C          162 GKLLASCSAD-------MTIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRDK--------TIKMWEVQTG  224 (410)
T ss_dssp             SSEEEEEETT-------SCCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTTC
T ss_pred             CCEEEEEeCC-------CeEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCC
Confidence            4555555432       357788887654322  11111111222222  556666776654        7889999887


Q ss_pred             ccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE-------
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-------  296 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-------  296 (390)
                      .    -...-..... .   ...+.. .++.+++.|+   ....+.+||..+......-. . ......++..       
T Consensus       225 ~----~~~~~~~h~~-~---v~~~~~~~~g~~l~s~s---~D~~v~vwd~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          225 Y----CVKTFTGHRE-W---VRMVRPNQDGTLIASCS---NDQTVRVWVVATKECKAELR-E-HRHVVECISWAPESSYS  291 (410)
T ss_dssp             C----EEEEEECCSS-C---EEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEEC-C-CSSCEEEEEECCSCGGG
T ss_pred             c----EEEEEeCCCc-c---EEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeEec-C-CCceEEEEEEcCccccc
Confidence            6    3221111111 1   111221 2556665542   23446678887665432111 0 0000001110       


Q ss_pred             -------------eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          297 -------------MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       297 -------------~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                                   ...|.+++.|+.++.+..||..+..  .+..+....... ++... +|+.++.|+.+..|.+||+.+
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                         0236778888889999999988653  222222222222 33333 566667777788999999876


Q ss_pred             C
Q 016368          362 S  362 (390)
Q Consensus       362 ~  362 (390)
                      .
T Consensus       370 ~  370 (410)
T 1vyh_C          370 K  370 (410)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.70  E-value=0.097  Score=47.62  Aligned_cols=198  Identities=11%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEE--ECCC
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKW--DLKS  223 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~y--d~~t  223 (390)
                      ..+++|.+.... ...-.++.+|+.+++.+.+... ....-..++.. ++ .||+.+....     ....+.+|  |..+
T Consensus        14 ~~~~vg~y~~~~-~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~-----~~~~v~~~~~~~~~   86 (361)
T 3scy_A           14 LTMLVGTYTSGN-SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSK-----DQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEECCSSS-CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSS-----TTCEEEEEEEETTT
T ss_pred             eEEEEEeccCCC-CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCC-----CCCcEEEEEEeCCC
Confidence            345666554321 1112355567788887765443 11111122222 34 5777665321     12355555  4555


Q ss_pred             CccccccEEcccCCCCCccccceEEEEECCE-EEEEcccCCCCceeEEEeCCCC-CeEecCC-----C-CCCC----C-C
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGFKGN-LCMVNLKGNGAKDGAIYNVELD-KWKEMPE-----G-MHAG----W-N  290 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~-lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~-----~-~~~~----~-~  290 (390)
                      +.    .+.+...+.....  ....+. +++ +|+.+   .....+.+|+..++ ....+..     . -+.+    . .
T Consensus        87 g~----~~~~~~~~~~~~~--p~~~~~-dg~~l~~~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~  156 (361)
T 3scy_A           87 GT----LHLLNTQKTMGAD--PCYLTT-NGKNIVTAN---YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH  156 (361)
T ss_dssp             TE----EEEEEEEECSSSC--EEEEEE-CSSEEEEEE---TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred             Cc----EEEeeEeccCCCC--cEEEEE-CCCEEEEEE---CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence            66    6666544321110  133333 665 55552   23455778888643 2211110     0 0000    0 1


Q ss_pred             CceEEEeeCCe-EEEEeCCCCcEEEEECCCCc-------eEEc-----ccccccccceeEEEE-CC-EEEEEeeCCceEE
Q 016368          291 GPAASTMNEEE-LYVVNEGKGRLSKYDADHDW-------WDEV-----IELAELKGAEKITAA-RG-RVCAVCENGERIM  355 (390)
Q Consensus       291 ~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~~-------W~~i-----~~~p~~r~~~~~~~~-~g-~l~i~g~~~~~v~  355 (390)
                      .+.++...+|+ ||+.+..++.+.+|+.....       ....     ...+.......++.. +| .+|+.+...+.+.
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  236 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI  236 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence            12344334675 77777667788888766543       2211     112222222334443 55 4777755677899


Q ss_pred             EEEcCCC
Q 016368          356 VVDVLAS  362 (390)
Q Consensus       356 ~~d~~~~  362 (390)
                      +||+.+.
T Consensus       237 v~~~~~g  243 (361)
T 3scy_A          237 AFRYADG  243 (361)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            9988743

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.1  Score=45.92  Aligned_cols=187  Identities=10%  Similarity=0.046  Sum_probs=92.6

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKK  218 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  218 (390)
                      .++...+..++.++.       -..+.+||....... +.....  .-.++...  ++..++.|+.+.        .+.+
T Consensus       108 ~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~~~~~d~--------~i~i  169 (313)
T 3odt_A          108 CSLSFQDGVVISGSW-------DKTAKVWKEGSLVYN-LQAHNA--SVWDAKVVSFSENKFLTASADK--------TIKL  169 (313)
T ss_dssp             EEEEEETTEEEEEET-------TSEEEEEETTEEEEE-EECCSS--CEEEEEEEETTTTEEEEEETTS--------CEEE
T ss_pred             EEEEecCCEEEEEeC-------CCCEEEEcCCcEEEe-cccCCC--ceeEEEEccCCCCEEEEEECCC--------CEEE
Confidence            455556777666653       245778882211111 111111  11122222  566666666554        6778


Q ss_pred             EECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee
Q 016368          219 WDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN  298 (390)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  298 (390)
                      ||.....     ..+........   ......-+++++..+    ....+.+||..+.+-...-.  ........++...
T Consensus       170 ~d~~~~~-----~~~~~~~~~~i---~~~~~~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~  235 (313)
T 3odt_A          170 WQNDKVI-----KTFSGIHNDVV---RHLAVVDDGHFISCS----NDGLIKLVDMHTGDVLRTYE--GHESFVYCIKLLP  235 (313)
T ss_dssp             EETTEEE-----EEECSSCSSCE---EEEEEEETTEEEEEE----TTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECT
T ss_pred             EecCceE-----EEEeccCcccE---EEEEEcCCCeEEEcc----CCCeEEEEECCchhhhhhhh--cCCceEEEEEEec
Confidence            8843322     22222111111   122223466743332    33457789988664322111  0111112233223


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++ ++.++.++.+..||..+.+-...-..+.. ....+... +++ ++.++.++.+.+||+.+.
T Consensus       236 ~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          236 NGD-IVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TSC-EEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             CCC-EEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            554 66777889999999988764443322211 12233333 566 455677789999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.64  E-value=0.19  Score=45.90  Aligned_cols=188  Identities=7%  Similarity=-0.098  Sum_probs=101.1

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCC-CCCcceEEEEEC--CEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS-IPRRWCAMGSVG--GVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~-~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      .+++.|+..       ..+.+||..+.+....-... ....-.+++...  +.+++.|+.+.        .+.+||..+.
T Consensus        87 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG--------ATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT--------EEEEEETTSC
T ss_pred             CEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC--------EEEEEECCCC
Confidence            456665442       46889999887665443321 122222333333  46666666554        7889999877


Q ss_pred             ccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-E
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-L  302 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-l  302 (390)
                      .    ...+.........  ..+++. -++++++.|+   ....+.+||+....-..+..   ......+++...++. +
T Consensus       152 ~----~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          152 V----IQVFAKTDSWDYW--YCCVDVSVSRQMLATGD---STGRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             E----EEEEECCCCSSCC--EEEEEEETTTTEEEEEE---TTSEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTE
T ss_pred             c----eEEEeccCCCCCC--eEEEEECCCCCEEEEEC---CCCCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCE
Confidence            6    5555433211110  122322 3556555532   23457789985443333322   111112233224565 8


Q ss_pred             EEEeCCCCcEEEEECCCCc--eEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          303 YVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       303 yv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.++.++.+..||..+..  -..+..+.......++...  ++..++.++.++.+.+||+.+.
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            8888889999999988622  1122222221222233332  5677777777889999998764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.61  E-value=0.12  Score=52.86  Aligned_cols=211  Identities=9%  Similarity=0.052  Sum_probs=117.1

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeec-CeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVR-NNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      .++.||+.++++..+..... +. .       .      ..++..+ ++.+.+|..        ..+++||+.+++|+..
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~-~~-~-------~------v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKN-EL-L-------D------VRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTT-CC-C-------C------EEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEE
T ss_pred             CEEEEcCCCCcEEEeccCCC-CC-C-------e------EEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEec
Confidence            57788888888777653211 11 0       0      1333333 455555532        4689999999888664


Q ss_pred             CCCC---CCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc---CCCCCccccceEEEE-
Q 016368          180 PQLS---IPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ---LKDGRFSREAVEAVG-  250 (390)
Q Consensus       180 ~~~~---~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~---~~~~~~~r~~~~~~~-  250 (390)
                      ....   ..... .++... ++.|++.. ..        ..+.+||+.++.    ++....   ++...    ..+++. 
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~--------~Gl~~~~~~~~~----~~~~~~~~~l~~~~----i~~i~~d  547 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGT-FG--------GGVGIYTPDMQL----VRKFNQYEGFCSNT----INQIYRS  547 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEE-SS--------SCEEEECTTCCE----EEEECTTTTCSCSC----EEEEEEC
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEE-cC--------CCEEEEeCCCCe----EEEccCCCCCCCCe----eEEEEEC
Confidence            3222   11111 122222 56777643 21        257889999888    776543   22211    133333 


Q ss_pred             ECCEEEEEcccCCCCcee-EEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368          251 FKGNLCMVNLKGNGAKDG-AIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE  327 (390)
Q Consensus       251 ~~g~lyv~gg~g~~~~~~-~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~  327 (390)
                      .+|.+++-.     .... ..||+.+++++....  .++... ..+++...+|.|++.+  .+.+.+||+++.++.....
T Consensus       548 ~~g~lWi~T-----~~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~  619 (781)
T 3v9f_A          548 SKGQMWLAT-----GEGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWAST--NTGISCYITSKKCFYTYDH  619 (781)
T ss_dssp             TTSCEEEEE-----TTEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEECG
T ss_pred             CCCCEEEEE-----CCCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEc--CCceEEEECCCCceEEecc
Confidence            367777763     2345 688999888876543  132222 2344432468888765  3468999999988877653


Q ss_pred             c---cccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          328 L---AELKGA-EKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       328 ~---p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .   +..... .++... +|+||+-+.  +.+..+|+..
T Consensus       620 ~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~f~p~~  656 (781)
T 3v9f_A          620 SNNIPQGSFISGCVTKDHNGLIYFGSI--NGLCFFNPDI  656 (781)
T ss_dssp             GGTCCSSCEEEEEEEECTTSCEEEEET--TEEEEECSCC
T ss_pred             cCCccccccccCceEECCCCEEEEECC--CceEEEChhh
Confidence            2   222111 223333 678877432  3577787754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.60  E-value=0.2  Score=46.73  Aligned_cols=190  Identities=9%  Similarity=0.014  Sum_probs=98.5

Q ss_pred             eEEeec--CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeE
Q 016368          141 QSLGVR--NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSM  216 (390)
Q Consensus       141 ~~~~~~--~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~  216 (390)
                      .++...  +.+++.|+.       -..+.+||..+++....  +...... .+++.. ++++++.|+.+.        .+
T Consensus       112 ~~~~~~p~~~~l~s~s~-------Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D~--------~i  174 (410)
T 1vyh_C          112 TRVIFHPVFSVMVSASE-------DATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADM--------TI  174 (410)
T ss_dssp             EEEEECSSSSEEEEEES-------SSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETTS--------CC
T ss_pred             EEEEEcCCCCEEEEEeC-------CCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCCC--------eE
Confidence            444443  355555543       24688999887754321  1111111 122222 567777777664        56


Q ss_pred             EEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEE
Q 016368          217 KKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAS  295 (390)
Q Consensus       217 ~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  295 (390)
                      .+||..+..      .+..+......  -.+++.. ++..++.|+   ....+.+||..++.-...-. . .......+.
T Consensus       175 ~iwd~~~~~------~~~~~~~h~~~--V~~v~~~p~~~~l~s~s---~D~~i~~wd~~~~~~~~~~~-~-h~~~v~~~~  241 (410)
T 1vyh_C          175 KLWDFQGFE------CIRTMHGHDHN--VSSVSIMPNGDHIVSAS---RDKTIKMWEVQTGYCVKTFT-G-HREWVRMVR  241 (410)
T ss_dssp             CEEETTSSC------EEECCCCCSSC--EEEEEECSSSSEEEEEE---TTSEEEEEETTTCCEEEEEE-C-CSSCEEEEE
T ss_pred             EEEeCCCCc------eeEEEcCCCCC--EEEEEEeCCCCEEEEEe---CCCeEEEEECCCCcEEEEEe-C-CCccEEEEE
Confidence            788887655      22222211110  1223322 555555531   23557789988765322111 0 111111222


Q ss_pred             EeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE----------------------CCEEEEEeeCCce
Q 016368          296 TMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA----------------------RGRVCAVCENGER  353 (390)
Q Consensus       296 ~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~----------------------~g~l~i~g~~~~~  353 (390)
                      ...++.+++.|+.++.+..||..+......  +........++.+                      .|.+++.|+.++.
T Consensus       242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          242 PNQDGTLIASCSNDQTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            225788889999999999999987654332  1111111111111                      2556777777888


Q ss_pred             EEEEEcCCC
Q 016368          354 IMVVDVLAS  362 (390)
Q Consensus       354 v~~~d~~~~  362 (390)
                      |.+||+.+.
T Consensus       320 i~iwd~~~~  328 (410)
T 1vyh_C          320 IKMWDVSTG  328 (410)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEECCCC
Confidence            999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.60  E-value=0.34  Score=42.68  Aligned_cols=192  Identities=10%  Similarity=0.016  Sum_probs=98.2

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE---CCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ++..++.|+..       ..+.+||..+.+.+.+..+...... .+++..   ++.+++.|+.+.        .+.+||.
T Consensus        20 ~g~~las~s~D-------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~--------~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETT-------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT--------EEEEEEB
T ss_pred             CCCEEEEEeCC-------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC--------EEEEEEc
Confidence            34566655432       3578888875544333322211111 122222   256777777664        7889999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEE-C--CEEEEEcccCCCCceeEEEeCCCCC-eEecCCCCCCCCCCceEEEe
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEGMHAGWNGPAASTM  297 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~  297 (390)
                      .++.    |..+..+......  ..+++.. +  +.+.+.|+   ....+.+||..+.. +..... ........++...
T Consensus        85 ~~~~----~~~~~~~~~h~~~--v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~  154 (297)
T 2pm7_B           85 ENGR----WSQIAVHAVHSAS--VNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWA  154 (297)
T ss_dssp             SSSC----BCCCEEECCCSSC--EEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEE-ECCSSCEEEEEEC
T ss_pred             CCCc----eEEEEEeecCCCc--eeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeee-ecccCccceEeec
Confidence            9887    7655433211110  1222222 1  45555531   23446678876542 211100 0000000111110


Q ss_pred             -------------eCCeEEEEeCCCCcEEEEECCCCc--eEEcccccccccceeEEEE--C---CEEEEEeeCCceEEEE
Q 016368          298 -------------NEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEKITAA--R---GRVCAVCENGERIMVV  357 (390)
Q Consensus       298 -------------~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~--~---g~l~i~g~~~~~v~~~  357 (390)
                                   .++++++.|+.++.+..||..+..  |..+..+.........+.+  +   +.+++.++.+..|.+|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                         125688888889988888876543  6555555444333333333  2   3667776778889999


Q ss_pred             EcCCC
Q 016368          358 DVLAS  362 (390)
Q Consensus       358 d~~~~  362 (390)
                      |+...
T Consensus       235 d~~~~  239 (297)
T 2pm7_B          235 TQDNE  239 (297)
T ss_dssp             EESST
T ss_pred             EeCCC
Confidence            98763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.59  E-value=0.14  Score=46.62  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=96.6

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCC-CC-Ccc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS-IP-RRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~-~~-r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      ..++.++.|+.       -..+.+||..+++-....... .. ... .+++.. +++.++.|+.+.        .+.+||
T Consensus        91 s~d~~l~~~s~-------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------~i~iwd  155 (344)
T 4gqb_B           91 VGERGILVASD-------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------CIKVWD  155 (344)
T ss_dssp             ETTTEEEEEET-------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEE
T ss_pred             eCCCeEEEEEC-------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEE
Confidence            34455555533       246888998877532221110 01 111 122222 667777777654        688999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEE-ECC-EEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCCCCCCceEEE-
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKG-NLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHAGWNGPAAST-  296 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~-  296 (390)
                      ..++.    -  +..+......  -.+++. .++ .+++.|+   ....+.+||..+.+-.. +.. ........+++. 
T Consensus       156 ~~~~~----~--~~~~~~h~~~--V~~~~~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~  223 (344)
T 4gqb_B          156 LAQQV----V--LSSYRAHAAQ--VTCVAASPHKDSVFLSCS---EDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWH  223 (344)
T ss_dssp             TTTTE----E--EEEECCCSSC--EEEEEECSSCTTEEEEEE---TTSCEEEEETTSSSCEEECC-----CCCEEEEEEC
T ss_pred             CCCCc----E--EEEEcCcCCc--eEEEEecCCCCCceeeec---cccccccccccccceeeeeec-ceeeccceeeeec
Confidence            98876    2  2222211110  122332 233 3555531   23457789998765433 222 111111112222 


Q ss_pred             eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CC-EEEEEeeCCceEEEEEcCCC
Q 016368          297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..++++++.|+.++.+..||..+.+  .+..+.........+.+  ++ ++++.|+.+..|.+||+.+.
T Consensus       224 p~~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          224 PQQSEVFVFGDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             SSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             CCCCcceEEeccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            1267788889889999999988653  33333333333333333  34 55666677778999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.54  E-value=0.3  Score=43.18  Aligned_cols=185  Identities=5%  Similarity=0.017  Sum_probs=94.8

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++..++.|+.       -..+.+||..+++-..  .+...... .+++.. ++.+++.|+.+.        .+.+||..+
T Consensus        66 ~~~~l~s~s~-------d~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sgs~D~--------~v~lWd~~~  128 (304)
T 2ynn_A           66 RKNWIIVGSD-------DFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWEN  128 (304)
T ss_dssp             GGTEEEEEET-------TSEEEEEETTTCCEEE--EEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEGGG
T ss_pred             CCCEEEEECC-------CCEEEEEECCCCcEEE--EEeCCCCcEEEEEEcCCCCEEEEECCCC--------eEEEEECCC
Confidence            3455555543       2468889988764321  11111111 122222 456666666654        678899877


Q ss_pred             CccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCCCCCCceEEE--e
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHAGWNGPAAST--M  297 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~  297 (390)
                      +.     .....+.....  .-.+++..  ++.+++.|+   ....+.+||..+..  ......   .......+..  .
T Consensus       129 ~~-----~~~~~~~~h~~--~v~~v~~~p~~~~~l~sgs---~D~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~  195 (304)
T 2ynn_A          129 NW-----ALEQTFEGHEH--FVMCVAFNPKDPSTFASGC---LDRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPL  195 (304)
T ss_dssp             TT-----EEEEEECCCCS--CEEEEEECTTCTTEEEEEE---TTSEEEEEETTCSSCSEEEECC---CTTCEEEEEECCS
T ss_pred             Cc-----chhhhhcccCC--cEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCccceeccC---CcCcEEEEEEEEc
Confidence            53     32222211111  01233332  345555532   23456788886542  111111   1111111221  1


Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++.+++.|+.++.+..||..+.+  .+..+.........+.+  ++.+++.|+.+..|.+||+.+.
T Consensus       196 ~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          196 PDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             TTCCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCEEEEEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            256788888889999999998754  33333333333333333  5667777777889999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.28  Score=46.18  Aligned_cols=149  Identities=7%  Similarity=-0.003  Sum_probs=78.0

Q ss_pred             CCE-EEEEeccCCCCCCCccCeEEEEECC--CCccccccEE-cccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeE
Q 016368          195 GGV-VYVASGVGAHYRGDVARSMKKWDLK--SDREDWKWEK-KAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGA  269 (390)
Q Consensus       195 ~~~-lyv~GG~~~~~~~~~~~~~~~yd~~--t~~~~~~W~~-~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~  269 (390)
                      +++ |++.|+.+.        .+.+||..  ++.    -.. +........   ..+++.. +++..+.|+   ....+.
T Consensus       113 d~~~l~~~~~~dg--------~v~iwd~~~~~~~----~~~~~~~~~~~~~---v~~~~~sp~~~~l~~~~---~~g~v~  174 (450)
T 2vdu_B          113 DESRLIACADSDK--------SLLVFDVDKTSKN----VLKLRKRFCFSKR---PNAISIAEDDTTVIIAD---KFGDVY  174 (450)
T ss_dssp             TSSEEEEEEGGGT--------EEEEEEECSSSSS----CEEEEEEEECSSC---EEEEEECTTSSEEEEEE---TTSEEE
T ss_pred             CCCEEEEEECCCC--------eEEEEECcCCCCc----eeeeeecccCCCC---ceEEEEcCCCCEEEEEe---CCCcEE
Confidence            444 467776654        68889987  544    222 211011111   1223322 566555542   123456


Q ss_pred             EEeCCCCCeEe-cCCCCC-CCCCCceEEEeeC---CeEEEEeCCCCcEEEEECCCCceEEcccccccccc-eeEEEECCE
Q 016368          270 IYNVELDKWKE-MPEGMH-AGWNGPAASTMNE---EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA-EKITAARGR  343 (390)
Q Consensus       270 ~yd~~~~~W~~-~~~~~~-~~~~~~~~~~~~~---g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~~g~  343 (390)
                      ++|..+..-.. ....+. ......+++...+   +++++.|+.++.+.+||..+....... +...... ..++..+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCCCceEEEEECCCC
Confidence            77776554332 111011 1111122232356   888888988999999998876533221 1111121 222222677


Q ss_pred             EEEEeeCCceEEEEEcCCC
Q 016368          344 VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       344 l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++.|+.+..|.+||+.+.
T Consensus       254 ~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEEESSSEEEEEETTTC
T ss_pred             EEEEEeCCCeEEEEECCCC
Confidence            7777777889999999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.53  E-value=0.52  Score=45.89  Aligned_cols=269  Identities=8%  Similarity=-0.021  Sum_probs=129.6

Q ss_pred             CCCcHHHHHHHHhcCC-------chhhHhhhHhHHHhhc------CCCCC--CcccEEEEeecCCCCCCCCCCcccCCCc
Q 016368           35 PGLPNHLADRCLSSLP-------PALLFSVCHSWRRLLY------SPYFP--PFFSLYALLFNNNKPSHNNNNYYSFNSS   99 (390)
Q Consensus        35 ~~LP~dl~~~iL~rLP-------l~~~r~Vck~W~~l~~------s~~f~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~   99 (390)
                      ..|.++-+..|...|-       ...+..+.+.|..+..      .|.+.  ....+|+....                .
T Consensus        95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~p~~~~~vs~~~----------------d  158 (543)
T 1nir_A           95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRD----------------A  158 (543)
T ss_dssp             TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEEGG----------------G
T ss_pred             cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcccccccCCCCEEEEEEcC----------------C
Confidence            3588888888776664       2233455566654431      11221  12334443322                2


Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceE-EeecCeEEEEEeecCCCCCCCCCcEEEeC--CCCce
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQS-LGVRNNLVLIAATTPHFLPALASPLAFNP--QSNTW  176 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gG~~~~~~~~~~~~~~~dp--~t~~W  176 (390)
                      ..+.++|..+++-...-....  ..+               .+ +.-+++.+++++.     .  +.+.+||+  .+.+-
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~--~~~---------------~v~~spdg~~l~v~~~-----d--~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGY--AVH---------------ISRMSASGRYLLVIGR-----D--ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECST--TEE---------------EEEECTTSCEEEEEET-----T--SEEEEEETTSSSCEE
T ss_pred             CeEEEEECCCceEEEEEecCc--ccc---------------eEEECCCCCEEEEECC-----C--CeEEEEECcCCCCcE
Confidence            357778988775433211111  111               22 2224556666543     1  67999999  66543


Q ss_pred             ecCCCCCCCCcceEEEEE-----CCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC--CC-----Cccc
Q 016368          177 FFGPQLSIPRRWCAMGSV-----GGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK--DG-----RFSR  243 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~-----~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~--~~-----~~~r  243 (390)
                      .  ..++....-..++..     +++ ||+.+..+        ..+.++|..+.+.   -..++...  ..     ..++
T Consensus       215 ~--~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~~---~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          215 V--AEIKIGIEARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEP---KQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             E--EEEECCSEEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCE---EEEEECCEECSSSCCEESCCC
T ss_pred             E--EEEecCCCcceEEeCCCcCCCCCEEEEEEccC--------CeEEEEecccccc---ceeecccCcccCccccccCCc
Confidence            2  222222222333333     454 55543222        3678899887651   12222111  00     0000


Q ss_pred             cceEEEE-ECC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEECCCC
Q 016368          244 EAVEAVG-FKG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       244 ~~~~~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~  320 (390)
                       ..+++. .++ .+|+. .  .+...+.++|..+.+-..+.. .+.+..-+.++...+|+ +|+....++.+.++|.++.
T Consensus       282 -v~~i~~s~~~~~~~vs-~--~~~g~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          282 -VAAIIASHEHPEFIVN-V--KETGKVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             -EEEEEECSSSSEEEEE-E--TTTTEEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             -eEEEEECCCCCEEEEE-E--CCCCeEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence             122332 234 44444 2  234567788887643211111 11222223333325666 5555556778999999987


Q ss_pred             ceEEcc---cccccccceeEEEE-CCEEEEEee-CCceEEEEEcCC
Q 016368          321 WWDEVI---ELAELKGAEKITAA-RGRVCAVCE-NGERIMVVDVLA  361 (390)
Q Consensus       321 ~W~~i~---~~p~~r~~~~~~~~-~g~l~i~g~-~~~~v~~~d~~~  361 (390)
                      +-...-   ..|.+.....+..- ++.+|+.+. +.+.|.+||+.+
T Consensus       357 ~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          357 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence            644322   22222122222222 477888765 456899999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.53  E-value=0.44  Score=44.53  Aligned_cols=181  Identities=13%  Similarity=-0.004  Sum_probs=99.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.++|+.+++-..+....  ...+ .+..  ++.||+......       ..++++|+.++..   ...+........
T Consensus       152 ~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~-------~~I~~~d~~~~~~---~~~~g~~~~~~~  218 (409)
T 3hrp_A          152 PRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGT-------HTVYVYMKASGWA---PTRIGQLGSTFS  218 (409)
T ss_dssp             TEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTT-------CEEEEEEGGGTTC---EEEEEECCTTSC
T ss_pred             CcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCC-------ceEEEEEcCCCce---eEEeeeccchhc
Confidence            57899999988665543221  1112 2222  446777643221       2788999876541   223311111000


Q ss_pred             cccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCC--CCCCCCCC--ceEEEee-CCeEEEEeCCCCcEEE
Q 016368          242 SREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE--GMHAGWNG--PAASTMN-EEELYVVNEGKGRLSK  314 (390)
Q Consensus       242 ~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~--~~~~~~~-~g~lyv~gg~~~~v~~  314 (390)
                      . ...++++.  ++.||+..    ....+.+||+.+..-..+..  ........  ..+++.. ++.||+.....+.|++
T Consensus       219 ~-~p~~iav~p~~g~lyv~d----~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~  293 (409)
T 3hrp_A          219 G-KIGAVALDETEEWLYFVD----SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK  293 (409)
T ss_dssp             S-CCCBCEECTTSSEEEEEC----TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             C-CcEEEEEeCCCCeEEEEE----CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE
Confidence            0 01334433  68899963    23457899998876554411  01111112  1445423 6899999988889999


Q ss_pred             EECCCCceEEcccc------------cccccceeEEEE-CCEEEEEee-CCceEEEEEcCCC
Q 016368          315 YDADHDWWDEVIEL------------AELKGAEKITAA-RGRVCAVCE-NGERIMVVDVLAS  362 (390)
Q Consensus       315 yd~~~~~W~~i~~~------------p~~r~~~~~~~~-~g~l~i~g~-~~~~v~~~d~~~~  362 (390)
                      ||.....-......            .......+++.. +|.||+.-. .+..|..+|+.+.
T Consensus       294 ~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          294 ITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             ECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             EecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            99876522222211            001223455555 678999866 6778999996543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.53  E-value=0.17  Score=51.57  Aligned_cols=178  Identities=8%  Similarity=-0.007  Sum_probs=99.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCC-CcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-C
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIP-RRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-R  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~  240 (390)
                      ..+++||+.+++++.......+ ..-.++... ++.|++...          ..+.+||+.++.    |+........ .
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~----~~~~~~~~~~~~  492 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH----------AGVFVIDLASKK----VIHHYDTSNSQL  492 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET----------TEEEEEESSSSS----CCEEECTTTSSC
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC----------CceEEEeCCCCe----EEecccCccccc
Confidence            4688999999998877532111 111222222 577877431          368899999988    8765433210 0


Q ss_pred             ccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCC-CCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          241 FSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGW-NGPAASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       241 ~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      ......+++. .+|.+++-.    ......+||+.+++++........+. ...+++...+|.|++-.. .|-+.+||++
T Consensus       493 ~~~~i~~i~~d~~g~lWigt----~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          493 LENFVRSIAQDSEGRFWIGT----FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             SCSCEEEEEECTTCCEEEEE----SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             ccceeEEEEEcCCCCEEEEE----cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence            0000123332 256777653    12346789999988887653111111 112222223678876654 3333999999


Q ss_pred             CCceEEcccccccc--cceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELK--GAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r--~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++++..........  ...+++.- +|.|++-+  .+.+..+|+.+.
T Consensus       568 ~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~  612 (781)
T 3v9f_A          568 NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSKK  612 (781)
T ss_dssp             TCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTTT
T ss_pred             CCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCCC
Confidence            99887765322111  12344443 68888864  345778887755

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.51  E-value=0.41  Score=42.55  Aligned_cols=170  Identities=12%  Similarity=-0.019  Sum_probs=87.6

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc----CCCC
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ----LKDG  239 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~----~~~~  239 (390)
                      .++++|+.+++.+.+...+..+.....+.. ++.+|+.-.        ....++++|+.+.... .|..-+.    .+..
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~--------~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS--------YRGAIWLIDVVQPSGS-IWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET--------TTTEEEEEETTTTEEE-EEEECGGGSCSSTTC
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC--------CCCeEEEEeCCCCcEe-EEEECCccccccccC
Confidence            488899888887665444433333333333 556777531        2347889998764200 0211111    1111


Q ss_pred             CccccceEEEEECCEEEEEcccCCCCceeEEEeCCC-CCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          240 RFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVEL-DKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       240 ~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      ... ....+..-++.+|+.   ......+.+||... .+...... ......-..+++..+|+||+.....+.|.+||++
T Consensus       167 ~~~-~pngis~dg~~lyv~---d~~~~~I~~~~~~~~g~~~~~~~-~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          167 VFP-AANGLKRFGNFLYVS---NTEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             CSC-SEEEEEEETTEEEEE---ETTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCC-cCCCcCcCCCEEEEE---eCCCCEEEEEEeCCCCCCCccEE-EeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            000 013333345579988   33456788999865 22211110 0001112344443578999988777899999987


Q ss_pred             CCceEEccccccc-ccceeEEEE-----CCEEEEEee
Q 016368          319 HDWWDEVIELAEL-KGAEKITAA-----RGRVCAVCE  349 (390)
Q Consensus       319 ~~~W~~i~~~p~~-r~~~~~~~~-----~g~l~i~g~  349 (390)
                       .+...+...+.. ....+++.-     ++.|||...
T Consensus       242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             -CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             -CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence             444444333322 233344432     267888753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.51  E-value=0.27  Score=45.82  Aligned_cols=178  Identities=12%  Similarity=0.026  Sum_probs=97.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.+.++....+..+.+  ....-.++++.  +++||+.--        ....+.++++.........+.+....... 
T Consensus        92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~--------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~-  160 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISRDIQA-  160 (400)
T ss_dssp             TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEET--------TTTEEEEEEC------CCCEEEECSSCSC-
T ss_pred             ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEec--------CCCeEEEEEcccCCCCCcceEEEeCCCCC-
Confidence            567778887776655422  12222344444  689998732        33478888886521000023322211111 


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeCC-CCcEEEEE
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNEG-KGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg~-~~~v~~yd  316 (390)
                         ..+.++  .+++||+.-   .....+.++|++...-+.+..   .....+ .+++ ..+|.||+.... .+.|++++
T Consensus       161 ---p~glavD~~~~~lY~~d---~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~  231 (400)
T 3p5b_L          161 ---PDGLAVDWIHSNIYWTD---SVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  231 (400)
T ss_dssp             ---EEEEEEETTTTEEEEEE---TTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred             ---cccEEEEecCCceEEEE---CCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence               134444  378999982   234567889988765444432   111112 3343 137899998743 46899999


Q ss_pred             CCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +....=..+.. .......++++-  +++||+.=.....|+.+|+...
T Consensus       232 ~dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          232 LNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             TTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCccEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            88644333321 112233456654  7889988555667888887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.50  E-value=0.33  Score=43.29  Aligned_cols=59  Identities=10%  Similarity=-0.022  Sum_probs=35.2

Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-C-CEEEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-R-GRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~-g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +|+.++++  ++.+.+||.++.+-....  +.......++.. + +.||+ ++..+.+.+||+.+.
T Consensus       266 dg~~l~~~--~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~-~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          266 DPNQIYGV--LNRLAKYDLKQRKLIKAA--NLDHTYYCVAFDKKGDKLYL-GGTFNDLAVFNPDTL  326 (349)
T ss_dssp             CTTEEEEE--ESEEEEEETTTTEEEEEE--ECSSCCCEEEECSSSSCEEE-ESBSSEEEEEETTTT
T ss_pred             CCCEEEEE--cCeEEEEECccCeEEEEE--cCCCCccceEECCCCCEEEE-ecCCCeEEEEecccc
Confidence            55444444  668999999876543322  222223344444 3 45776 455678999999765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.50  E-value=0.04  Score=50.36  Aligned_cols=173  Identities=5%  Similarity=-0.041  Sum_probs=87.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-C-CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-G-GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~  239 (390)
                      ..+.+||..+++-...  +......- +++.. + ..+++.|+.+.        .+.+||..+.+    -.. +......
T Consensus       149 ~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~--------~v~iwd~~~~~----~~~~~~~~~~~  214 (344)
T 4gqb_B          149 ICIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN--------RILLWDTRCPK----PASQIGCSAPG  214 (344)
T ss_dssp             SCEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS--------CEEEEETTSSS----CEEECC----C
T ss_pred             CeEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeecccc--------ccccccccccc----eeeeeecceee
Confidence            3688999988754321  11111111 22222 3 35777777654        68899998876    322 2211111


Q ss_pred             CccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEE
Q 016368          240 RFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKY  315 (390)
Q Consensus       240 ~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~y  315 (390)
                      ..   ..+++..  ++++++.|+   ....+.+||..+.+- ..+..   ......+++...++ ++++.|+.++.+.+|
T Consensus       215 ~~---~~~~~~~p~~~~~l~sg~---~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          215 YL---PTSLAWHPQQSEVFVFGD---ENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             CC---EEEEEECSSCTTEEEEEE---TTSEEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             cc---ceeeeecCCCCcceEEec---cCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence            11   1223322  456777642   224567899876531 11111   11111222321344 567778888999999


Q ss_pred             ECCCCceEEcccccccccce-eEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          316 DADHDWWDEVIELAELKGAE-KITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       316 d~~~~~W~~i~~~p~~r~~~-~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |..+.+-..   +..+.... +++..  +..+++-++.+..|.+|++.++
T Consensus       286 d~~~~~~~~---~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          286 DSSLSELFR---SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CTTCCEEEE---ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             ECCCCcEEE---EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            998764322   22222222 33332  3456666677789999998776

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.16  Score=46.72  Aligned_cols=186  Identities=7%  Similarity=-0.035  Sum_probs=92.3

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCc
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDR  225 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~  225 (390)
                      +.+++.++.       -..+.+||........+....  ..-.+++.. +++.++.++.+.        .+.+||..+..
T Consensus       120 ~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~  182 (425)
T 1r5m_A          120 GNSIVTGVE-------NGELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVEN--------VTILWNVISGT  182 (425)
T ss_dssp             SSEEEEEET-------TSCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTC--------CEEEEETTTTE
T ss_pred             CCEEEEEeC-------CCeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCC--------eEEEEECCCCc
Confidence            455555543       246888884333333332211  111222222 455566665543        67889988766


Q ss_pred             cccccEEcccCCCCCc-----------cc-cceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368          226 EDWKWEKKAQLKDGRF-----------SR-EAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA  293 (390)
Q Consensus       226 ~~~~W~~~~~~~~~~~-----------~r-~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~  293 (390)
                          -...-.......           .. .......-++.+++.+    ....+.+||..+.+-...-.  ........
T Consensus       183 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~--~~~~~i~~  252 (425)
T 1r5m_A          183 ----VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG----PKGAIFVYQITEKTPTGKLI--GHHGPISV  252 (425)
T ss_dssp             ----EEEEECCC---------------CCCBSCCEEEETTEEEEEC----GGGCEEEEETTCSSCSEEEC--CCSSCEEE
T ss_pred             ----EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc----CCCeEEEEEcCCCceeeeec--cCCCceEE
Confidence                332221111110           00 0111222355544442    23457789988763221111  01111122


Q ss_pred             EEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccc-ceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          294 ASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG-AEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       294 ~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~-~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++...++.+++.++.++.+..||..+..-..  .+..... ...+... ++ +++.++.+..+.+||+.+.
T Consensus       253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQN--CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN  320 (425)
T ss_dssp             EEEETTTTEEEEEETTSCEEEECSSSBSCSE--EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCccce--EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence            3322578888888889999999988654222  2221222 2334444 45 6666677779999998765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.48  E-value=0.39  Score=43.65  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE---CCEEEEEcccCCCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF---KGNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~---~g~lyv~gg~g~~~~~~~~y  271 (390)
                      ++..++.|+.+.        .+.+||..+..    -...-.-....    ..+....   ++.+++.|+   ....+.+|
T Consensus       165 ~~~~l~t~s~D~--------~v~lwd~~~~~----~~~~~~~h~~~----v~~~~~~~~~~g~~l~sgs---~Dg~v~~w  225 (354)
T 2pbi_B          165 SDMQILTASGDG--------TCALWDVESGQ----LLQSFHGHGAD----VLCLDLAPSETGNTFVSGG---CDKKAMVW  225 (354)
T ss_dssp             SSSEEEEEETTS--------EEEEEETTTCC----EEEEEECCSSC----EEEEEECCCSSCCEEEEEE---TTSCEEEE
T ss_pred             CCCEEEEEeCCC--------cEEEEeCCCCe----EEEEEcCCCCC----eEEEEEEeCCCCCEEEEEe---CCCeEEEE
Confidence            344455555443        78899998876    32211111111    1222221   345555542   23457789


Q ss_pred             eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEee
Q 016368          272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCE  349 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~  349 (390)
                      |+.+.+....-. . ......+++...++.+++.|+.++.+..||..+..-..+............+.+  ++.+.+.|+
T Consensus       226 d~~~~~~~~~~~-~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          226 DMRSGQCVQAFE-T-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             ETTTCCEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCcEEEEec-C-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence            988776433211 1 111111222224788889999999999999987643222211111112222222  677888878


Q ss_pred             CCceEEEEEcCCC
Q 016368          350 NGERIMVVDVLAS  362 (390)
Q Consensus       350 ~~~~v~~~d~~~~  362 (390)
                      .+..|.+||+.+.
T Consensus       304 ~d~~i~vwd~~~~  316 (354)
T 2pbi_B          304 NDYTINVWDVLKG  316 (354)
T ss_dssp             TTSCEEEEETTTC
T ss_pred             CCCcEEEEECCCC
Confidence            8889999998664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.44  E-value=0.15  Score=44.83  Aligned_cols=178  Identities=11%  Similarity=0.071  Sum_probs=93.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-Cc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-RF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~~  241 (390)
                      ..+++||+.++ .+..... . ..-.+++.. +++||+.....        ..+.+||+.+++    .+.+...... ..
T Consensus        50 ~~i~~~~~~~~-~~~~~~~-~-~~~~~l~~~~dg~l~v~~~~~--------~~i~~~d~~~g~----~~~~~~~~~~~~~  114 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMHP-S-HHQNGHCLNKQGHLIACSHGL--------RRLERQREPGGE----WESIADSFEGKKL  114 (296)
T ss_dssp             TEEEEEETTSC-EEEEESS-C-SSEEEEEECTTCCEEEEETTT--------TEEEEECSTTCC----EEEEECEETTEEC
T ss_pred             CEEEEEECCCC-eEEEECC-C-CCcceeeECCCCcEEEEecCC--------CeEEEEcCCCCc----EEEEeeccCCCCC
Confidence            47899999987 5443221 1 111233332 67888764322        378999998888    6655322111 00


Q ss_pred             cccceEEEEECCEEEEE----ccc----------CCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC
Q 016368          242 SREAVEAVGFKGNLCMV----NLK----------GNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE  307 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~----gg~----------g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg  307 (390)
                      .+....++--+|++|+.    |..          ......+..||+. ++...+......   ..+++...+|++++.+.
T Consensus       115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~gi~~s~dg~~lv~~~  190 (296)
T 3e5z_A          115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK---PNGLAFLPSGNLLVSDT  190 (296)
T ss_dssp             CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS---EEEEEECTTSCEEEEET
T ss_pred             CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC---CccEEECCCCCEEEEeC
Confidence            00011222347889886    320          0012346677776 555544331111   12333325677776666


Q ss_pred             CCCcEEEEECC-CCce-EEcccc-cccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          308 GKGRLSKYDAD-HDWW-DEVIEL-AELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       308 ~~~~v~~yd~~-~~~W-~~i~~~-p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..+.+++||.. +.+. ...... .......+++.- +|.||+..  ++.|.+||+...
T Consensus       191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~  247 (296)
T 3e5z_A          191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD  247 (296)
T ss_dssp             TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC
T ss_pred             CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC
Confidence            67799999986 4444 211111 111112244443 77888875  668888887643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.42  E-value=0.045  Score=58.88  Aligned_cols=174  Identities=11%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      ..+.+||..+++..................-+++.++.|+.+.        .+.+||..++.    ...+......    
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg--------~i~vwd~~~~~----~~~~~~~~~~---- 1046 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS--------VIQVWNWQTGD----YVFLQAHQET---- 1046 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS--------BEEEEETTTTE----EECCBCCSSC----
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCc----eEEEecCCCc----
Confidence            4688899877654322111111111111122566666666554        68899999887    5543322211    


Q ss_pred             cceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce
Q 016368          244 EAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW  322 (390)
Q Consensus       244 ~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W  322 (390)
                       ..+++.. +++++..+    ....+.+||..+.+-...-. ..... ..+++...+++.++.++.++.+..||..+.. 
T Consensus      1047 -v~~~~~~~~~~l~~~~----~dg~v~vwd~~~~~~~~~~~-~~~~~-v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~- 1118 (1249)
T 3sfz_A         1047 -VKDFRLLQDSRLLSWS----FDGTVKVWNVITGRIERDFT-CHQGT-VLSCAISSDATKFSSTSADKTAKIWSFDLLS- 1118 (1249)
T ss_dssp             -EEEEEECSSSEEEEEE----SSSEEEEEETTTTCCCEEEE-CCSSC-CCCEEECSSSSSCEEECCSSCCCEECSSSSS-
T ss_pred             -EEEEEEcCCCcEEEEE----CCCcEEEEECCCCceeEEEc-ccCCc-EEEEEECCCCCEEEEEcCCCcEEEEECCCcc-
Confidence             1233333 45554443    33457789988765322111 11111 1233333688888899989999999987644 


Q ss_pred             EEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          323 DEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       323 ~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       .+..+.........+.+  +|++.+.|+.++.|.+||+.+.
T Consensus      1119 -~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1119 -PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             -CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred             -eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence             33333333333333333  7778888777788999998865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.40  E-value=0.15  Score=45.36  Aligned_cols=192  Identities=15%  Similarity=0.103  Sum_probs=93.2

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCC--CCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEEC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQ--SNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~--t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ++..+++++..      ...+.+|+..  +++++.+..++....-..++.. ++ .||+.+..+        ..+.+||.
T Consensus        48 dg~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~i~~~d~  113 (343)
T 1ri6_A           48 DKRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA--------GNVSVTRL  113 (343)
T ss_dssp             TSSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT--------TEEEEEEE
T ss_pred             CCCEEEEeecC------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC--------CeEEEEEC
Confidence            45555555431      1467777765  7777655443322222223332 44 466654322        36788888


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEE-ECC-EEEEEcccCCCCceeEEEeCCC-CCeEecC--C-CCCCCCCCceEE
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVG-FKG-NLCMVNLKGNGAKDGAIYNVEL-DKWKEMP--E-GMHAGWNGPAAS  295 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~-~~W~~~~--~-~~~~~~~~~~~~  295 (390)
                      ..+..   .+.+........   ...++. -+| .+|+.+   .....+.+||+.+ ++...+.  . ..+.+.....++
T Consensus       114 ~~~~~---~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
T 1ri6_A          114 EDGLP---VGVVDVVEGLDG---CHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV  184 (343)
T ss_dssp             ETTEE---EEEEEEECCCTT---BCCCEECTTSSEEEEEE---GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred             CCCcc---ccccccccCCCC---ceEEEECCCCCEEEEec---CCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence            42210   222222221111   122322 244 466652   1234577899887 6665332  1 011111111233


Q ss_pred             EeeCCe-EEEEeCCCCcEEEEECC--CCceEEcc---ccccc----ccceeEEEE-CC-EEEEEeeCCceEEEEEcC
Q 016368          296 TMNEEE-LYVVNEGKGRLSKYDAD--HDWWDEVI---ELAEL----KGAEKITAA-RG-RVCAVCENGERIMVVDVL  360 (390)
Q Consensus       296 ~~~~g~-lyv~gg~~~~v~~yd~~--~~~W~~i~---~~p~~----r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~  360 (390)
                      ...+|+ +|+.+..++.+.+||..  +..+..+.   .++..    .....++.. +| .||+.+..++.+.+||+.
T Consensus       185 ~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          185 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            224565 77777677889999984  34554332   22221    111233333 34 566665566789999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.31  Score=44.79  Aligned_cols=192  Identities=9%  Similarity=0.051  Sum_probs=99.3

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCc------ee-cCCCCCCC-CcceEEEEE-C-CEEEEEeccCCCCCCCccCeE
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNT------WF-FGPQLSIP-RRWCAMGSV-G-GVVYVASGVGAHYRGDVARSM  216 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~------W~-~~~~~~~~-r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~  216 (390)
                      +.+++.++.       -..+.+||..+.+      -. .+...... ..-.+++.. + +.+++.|+.+.        .+
T Consensus       126 ~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~v  190 (416)
T 2pm9_A          126 DNVLASGGN-------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN--------FA  190 (416)
T ss_dssp             TTBEEEECS-------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS--------CE
T ss_pred             CCEEEEEcC-------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC--------CE
Confidence            455665543       2468888988765      11 11111111 111223333 2 56777776654        68


Q ss_pred             EEEECCCCccccccEEcccCCCC----CccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCC--CC
Q 016368          217 KKWDLKSDREDWKWEKKAQLKDG----RFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMH--AG  288 (390)
Q Consensus       217 ~~yd~~t~~~~~~W~~~~~~~~~----~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~--~~  288 (390)
                      .+||..+..    -...-.....    ..  ...+++.. ++ .+++.++.+.....+.+||..+..-. +.. +.  ..
T Consensus       191 ~iwd~~~~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~  262 (416)
T 2pm9_A          191 SIWDLKAKK----EVIHLSYTSPNSGIKQ--QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQT-LNQGHQ  262 (416)
T ss_dssp             EEEETTTTE----EEEEECCCCCSSCCCC--CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBC-CCSCCS
T ss_pred             EEEECCCCC----cceEEeccccccccCC--ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEE-eecCcc
Confidence            899998876    3322222110    01  01333333 33 46665422111126779998875311 111 11  11


Q ss_pred             CCCceEEEee-CCeEEEEeCCCCcEEEEECCCCceEEccccccccc-ceeEEEE-CC-EEEEEeeCCceEEEEEcCCCC
Q 016368          289 WNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKG-AEKITAA-RG-RVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       289 ~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~-~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .....++... ++.+++.++.++.+..||..+.+  .+..+..... ...+... ++ .+++.++.+..|.+||+.+..
T Consensus       263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE--QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC--EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc--cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            1112223222 78888999889999999988754  3333332222 2233333 44 677777778899999997753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.39  E-value=0.51  Score=42.24  Aligned_cols=174  Identities=11%  Similarity=0.036  Sum_probs=93.8

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE---ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS---VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      ..+.+||..+++........  ..-.++..   -++.+++.|+.+.        .+.+||..+..    -...-..+.  
T Consensus       108 g~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg--------~i~vwd~~~~~----~~~~~~~~~--  171 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDK--------TLKFWDTRSSN----PMMVLQLPE--  171 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETTS--------EEEEECSSCSS----CSEEEECSS--
T ss_pred             CcEEEEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCCC--------cEEEEECCCCc----EEEEEecCC--
Confidence            46889999888765432211  11122332   2567777777654        78899998776    222211221  


Q ss_pred             ccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCC----eEEEEeCCCCcEEE
Q 016368          241 FSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEE----ELYVVNEGKGRLSK  314 (390)
Q Consensus       241 ~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g----~lyv~gg~~~~v~~  314 (390)
                      .   ..+.......+++.+    ......+||....  .+..... . ............+.    ..++.++.++.+..
T Consensus       172 ~---~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          172 R---CYCADVIYPMAVVAT----AERGLIVYQLENQPSEFRRIES-P-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             C---EEEEEEETTEEEEEE----GGGCEEEEECSSSCEEEEECCC-S-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             C---ceEEEecCCeeEEEe----CCCcEEEEEeccccchhhhccc-c-ccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            1   244444566555553    3345778888765  3343333 1 11111222221222    33778888899999


Q ss_pred             EECCCCce-EEccccccccc------------ce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          315 YDADHDWW-DEVIELAELKG------------AE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       315 yd~~~~~W-~~i~~~p~~r~------------~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ||.....- ..+..+.....            .. +++.. ++++++.|+.+..|.+||+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            99886532 11111111111            12 23333 5667777777788999998864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.35  E-value=0.33  Score=49.61  Aligned_cols=211  Identities=8%  Similarity=0.011  Sum_probs=114.9

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeec-CeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVR-NNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      .+++||+.++++..+.....  ....     ..      ..++..+ ++.+.+|..        +.+++||+.+++|+..
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~--~l~~-----~~------v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNS--QLVN-----EN------VYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTS--CCSC-----SC------EEEEEECSSSCEEEEES--------SCEEEEETTTTEEEEC
T ss_pred             ceeEEeCCCCcEEEeecCCC--CcCC-----Ce------eEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEc
Confidence            46778888877776543211  0000     00      1233332 344555532        4689999999999876


Q ss_pred             CCC----CCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc------CCCCCccccceE
Q 016368          180 PQL----SIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ------LKDGRFSREAVE  247 (390)
Q Consensus       180 ~~~----~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~------~~~~~~~r~~~~  247 (390)
                      ...    ..+... .++... ++.|++...          ..+.+||+.++.    + ....      ++...    ..+
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----------~Gl~~~~~~~~~----~-~~~~~~~~~~l~~~~----i~~  547 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE----------EGLSVFKQEGLD----I-QKASILPVSNVTKLF----TNC  547 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES----------SCEEEEEEETTE----E-EECCCSCSCGGGGSC----EEE
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC----------CceEEEeCCCCe----E-EEecCCCCCCCCCCe----eEE
Confidence            533    111111 122222 567877542          257889998888    7 3321      11111    133


Q ss_pred             EEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCC--CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEE
Q 016368          248 AVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE--GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDE  324 (390)
Q Consensus       248 ~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~  324 (390)
                      ++. .+|.+++-.     ......||+.+++++....  .++.. ...+++...+|.|++.+  .+.+.+||+++.+++.
T Consensus       548 i~~d~~g~lWigT-----~~Gl~~~d~~~~~~~~~~~~~gl~~~-~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~  619 (795)
T 4a2l_A          548 IYEASNGIIWVGT-----REGFYCFNEKDKQIKRYNTTNGLPNN-VVYGILEDSFGRLWLST--NRGISCFNPETEKFRN  619 (795)
T ss_dssp             EEECTTSCEEEEE-----SSCEEEEETTTTEEEEECGGGTCSCS-CEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEe-----CCCceeECCCCCcEEEeCCCCCCchh-heEEEEECCCCCEEEEc--CCceEEEcCCCCcEEE
Confidence            333 357777753     2246789999998877543  12221 11233322367888776  3678999999998887


Q ss_pred             cccc---cccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          325 VIEL---AELKGA-EKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       325 i~~~---p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ....   +..... .++... +|.||+-+  .+.+..+|+..
T Consensus       620 ~~~~dGl~~~~f~~~~~~~~~~G~l~~g~--~~Gl~~~~p~~  659 (795)
T 4a2l_A          620 FTESDGLQSNQFNTASYCRTSVGQMYFGG--INGITTFRPEL  659 (795)
T ss_dssp             ECGGGTCSCSCEEEEEEEECTTSCEEEEE--TTEEEEECGGG
T ss_pred             cCCcCCCccccCccCceeECCCCeEEEec--CCceEEEcHHH
Confidence            6532   222111 233333 67787743  23577777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.34  E-value=0.59  Score=42.48  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=91.0

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCC-CC--cceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI-PR--RWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~-~r--~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      ..++.++.++..       ..+.+||..+++-........ ..  .-.+++.. +++.++.|+.+.        .+.+||
T Consensus       103 s~d~~~l~~s~d-------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg--------~v~iwd  167 (357)
T 4g56_B          103 VSEKGILVASDS-------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF--------SVKVWD  167 (357)
T ss_dssp             ETTTEEEEEETT-------SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEE
T ss_pred             cCCCCEEEEECC-------CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEE
Confidence            344555555431       358889988775433322211 11  11222222 567777777654        688999


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST-  296 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-  296 (390)
                      ..++.    -...-......    ..+++.. ++ .+++.++   ....+.+||+.+.+-..... ........ +++. 
T Consensus       168 ~~~~~----~~~~~~~h~~~----v~~v~~s~~~~~~~~s~~---~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~s  235 (357)
T 4g56_B          168 LSQKA----VLKSYNAHSSE----VNCVAACPGKDTIFLSCG---EDGRILLWDTRKPKPATRID-FCASDTIPTSVTWH  235 (357)
T ss_dssp             TTTTE----EEEEECCCSSC----EEEEEECTTCSSCEEEEE---TTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEEC
T ss_pred             CCCCc----EEEEEcCCCCC----EEEEEEccCCCceeeeec---cCCceEEEECCCCceeeeee-eccccccccchhhh
Confidence            98876    32221111111    1233332 33 3444431   22446788887765332222 11111111 2222 


Q ss_pred             eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CC-EEEEEeeCCceEEEEEcCCC
Q 016368          297 MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       297 ~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..++.+++.|+.++.+..||..+.+  .+..+.........+.+  ++ ++.+.|+.+..|.+||+.+.
T Consensus       236 p~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          236 PEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             TTSTTEEEEEESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             hcccceEEEeecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            1246788888888999999987643  22222222222233332  34 55666677778999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.33  E-value=0.44  Score=41.78  Aligned_cols=178  Identities=7%  Similarity=-0.040  Sum_probs=92.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCC---cceEEEE-ECCEEEEE----eccCCC-----CCCCccCeEEEEECCCCcccccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPR---RWCAMGS-VGGVVYVA----SGVGAH-----YRGDVARSMKKWDLKSDREDWKW  230 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r---~~~~~~~-~~~~lyv~----GG~~~~-----~~~~~~~~~~~yd~~t~~~~~~W  230 (390)
                      ..+.+||+.+++.+.+.......   .-..++. -+|+||+.    |.....     ........++.||+. +.    .
T Consensus        90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~  164 (296)
T 3e5z_A           90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT----L  164 (296)
T ss_dssp             TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC----E
T ss_pred             CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC----E
Confidence            57899999888876543221111   1112222 26889886    432110     001123478889887 55    4


Q ss_pred             EEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCC-CCCe-Ee--cCCCCCCCCCCceEEEeeCCeEEEE
Q 016368          231 EKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVE-LDKW-KE--MPEGMHAGWNGPAASTMNEEELYVV  305 (390)
Q Consensus       231 ~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~-~~~W-~~--~~~~~~~~~~~~~~~~~~~g~lyv~  305 (390)
                      +.+..-..  .   ..+.+. -+|++++..   .....+.+||+. +++. ..  +-. ..... ..+++...+|+||+.
T Consensus       165 ~~~~~~~~--~---~~gi~~s~dg~~lv~~---~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~-p~~i~~d~~G~l~v~  234 (296)
T 3e5z_A          165 SAPIRDRV--K---PNGLAFLPSGNLLVSD---TGDNATHRYCLNARGETEYQGVHFT-VEPGK-TDGLRVDAGGLIWAS  234 (296)
T ss_dssp             EEEECCCS--S---EEEEEECTTSCEEEEE---TTTTEEEEEEECSSSCEEEEEEEEC-CSSSC-CCSEEEBTTSCEEEE
T ss_pred             EEeecCCC--C---CccEEECCCCCEEEEe---CCCCeEEEEEECCCCcCcCCCeEee-CCCCC-CCeEEECCCCCEEEE
Confidence            44322111  1   133333 367766542   133567788876 4555 11  111 11111 123443368999988


Q ss_pred             eCCCCcEEEEECCCCceEEcccccccccceeEEEE--C-CEEEEEeeCCceEEEEEcCCCC
Q 016368          306 NEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--R-GRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       306 gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~-g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .  .+.+.+||++......+. .+..  ...++..  + +.||+- .. ..++.+++.+..
T Consensus       235 ~--~~~v~~~~~~g~~~~~~~-~~~~--~~~~~f~~~d~~~L~v~-t~-~~l~~~~~~~~~  288 (296)
T 3e5z_A          235 A--GDGVHVLTPDGDELGRVL-TPQT--TSNLCFGGPEGRTLYMT-VS-TEFWSIETNVRG  288 (296)
T ss_dssp             E--TTEEEEECTTSCEEEEEE-CSSC--CCEEEEESTTSCEEEEE-ET-TEEEEEECSCCB
T ss_pred             c--CCeEEEECCCCCEEEEEE-CCCC--ceeEEEECCCCCEEEEE-cC-CeEEEEEccccc
Confidence            7  678999999855444443 2222  2233331  3 357775 33 478899987763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.31  E-value=0.26  Score=44.89  Aligned_cols=171  Identities=10%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV----GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||..+++-...  +........+..+    ++.+++.|+.+.        .+.+||..+..    ....-.....
T Consensus       176 ~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd~~~~~----~~~~~~~h~~  241 (354)
T 2pbi_B          176 GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK--------KAMVWDMRSGQ----CVQAFETHES  241 (354)
T ss_dssp             SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS
T ss_pred             CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEecCCCC
Confidence            4678899887754221  1111111111222    356777777664        68899998877    4332211111


Q ss_pred             CccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          240 RFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       240 ~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                      .    ..+++.. ++..++.|+   ....+.+||+.+.+-...-. ........ .+....+|.+++.|+.++.+..||.
T Consensus       242 ~----v~~v~~~p~~~~l~s~s---~D~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          242 D----VNSVRYYPSGDAFASGS---DDATCRLYDLRADREVAIYS-KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             C----EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             C----eEEEEEeCCCCEEEEEe---CCCeEEEEECCCCcEEEEEc-CCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence            1    1223322 556655542   23456789987764222111 11111111 2222357889999998999999998


Q ss_pred             CCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEE
Q 016368          318 DHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVD  358 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d  358 (390)
                      .+..  .+..+.........+.+  +|+.++.|+.+..|.+||
T Consensus       314 ~~~~--~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          314 LKGS--RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTCS--EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCc--eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            7653  33333333333333333  677777777777777764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.26  E-value=0.19  Score=43.50  Aligned_cols=190  Identities=8%  Similarity=-0.061  Sum_probs=94.9

Q ss_pred             eEEEEeCCC-CCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          101 EFFCFDPIS-STWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       101 ~~~~~d~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      .++++|..+ ++...+..........              .....-++..+++++...   .....++.++..+++.+.+
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~--------------~~~~spdg~~l~~~~~~~---~~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNN--------------DHGISPDGALYAISDKVE---FGKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCS--------------CCEECTTSSEEEEEECTT---TSSCEEEEEETTCCCCEEC
T ss_pred             eEEEEeCCCCCCceEecccccccccc--------------ceEECCCCCEEEEEEeCC---CCcceEEEEECCCCceEEe
Confidence            578889888 7766654332101111              012222445555554221   1346788888887765555


Q ss_pred             CCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEE
Q 016368          180 PQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLC  256 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~ly  256 (390)
                      .....   ....... ++ .|++.++.+.      ...++.+|..+..    ...+.......     ...+. -+|+..
T Consensus       126 ~~~~~---~~~~~~spdg~~l~~~~~~~~------~~~l~~~~~~~~~----~~~~~~~~~~~-----~~~~~s~dg~~l  187 (297)
T 2ojh_A          126 TKNLP---SYWHGWSPDGKSFTYCGIRDQ------VFDIYSMDIDSGV----ETRLTHGEGRN-----DGPDYSPDGRWI  187 (297)
T ss_dssp             CSSSS---EEEEEECTTSSEEEEEEEETT------EEEEEEEETTTCC----EEECCCSSSCE-----EEEEECTTSSEE
T ss_pred             ecCCC---ccceEECCCCCEEEEEECCCC------ceEEEEEECCCCc----ceEcccCCCcc-----ccceECCCCCEE
Confidence            43321   2222222 44 4554554432      2356667777776    55554433211     22222 356544


Q ss_pred             EEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCC-----------CcEEEEECCCCceEEc
Q 016368          257 MVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGK-----------GRLSKYDADHDWWDEV  325 (390)
Q Consensus       257 v~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~-----------~~v~~yd~~~~~W~~i  325 (390)
                      ++++...+...++.++........+.. ..  .....+....+|+.+++++.+           ..+++||.++.+...+
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITD-SA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCC-CS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEec-CC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            433221233445566766666666554 11  111122222466655555432           3699999998877666


Q ss_pred             ccc
Q 016368          326 IEL  328 (390)
Q Consensus       326 ~~~  328 (390)
                      ..+
T Consensus       265 ~~~  267 (297)
T 2ojh_A          265 FDL  267 (297)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.24  E-value=0.2  Score=44.73  Aligned_cols=181  Identities=11%  Similarity=0.082  Sum_probs=94.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcc-eEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||..+++...+..+...... .+++..   ++.+++.|+.+.        .+.+||..+..    |..+..+...
T Consensus        35 ~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~--------~v~iWd~~~~~----~~~~~~~~~h  102 (316)
T 3bg1_A           35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR--------KVIIWREENGT----WEKSHEHAGH  102 (316)
T ss_dssp             TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS--------CEEEECCSSSC----CCEEEEECCC
T ss_pred             CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC--------EEEEEECCCCc----ceEEEEccCC
Confidence            3578888876643322222211111 122222   256777777654        68899999887    7655433211


Q ss_pred             CccccceEEEEE-C--CEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEee-----------------
Q 016368          240 RFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMN-----------------  298 (390)
Q Consensus       240 ~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~-----------------  298 (390)
                      ...  -.+++.. +  +.+++.|+   ....+.+||..+. .|...............+....                 
T Consensus       103 ~~~--V~~v~~~p~~~g~~lasgs---~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  177 (316)
T 3bg1_A          103 DSS--VNSVCWAPHDYGLILACGS---SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN  177 (316)
T ss_dssp             SSC--CCEEEECCTTTCSCEEEEC---SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred             CCc--eEEEEECCCCCCcEEEEEc---CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence            110  1233332 2  55555531   2344667887765 5754322010110111111101                 


Q ss_pred             CCeEEEEeCCCCcEEEEECCC-CceEEcccccccccceeEEEE--C----CEEEEEeeCCceEEEEEcCC
Q 016368          299 EEELYVVNEGKGRLSKYDADH-DWWDEVIELAELKGAEKITAA--R----GRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~-~~W~~i~~~p~~r~~~~~~~~--~----g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .+++++.|+.++.+..||..+ ..|..+..+.........+.+  +    +.+++.|+.+..|.+||+.+
T Consensus       178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            146778888888888888864 458777666544433333333  2    25666667777899999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.23  E-value=0.53  Score=42.95  Aligned_cols=180  Identities=12%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             CCcEEEeCCCCc------eecCCCCCCC---CcceEEEEE-----CCEE-EEEeccCCCCCCCccCeEEEEECCC-----
Q 016368          164 ASPLAFNPQSNT------WFFGPQLSIP---RRWCAMGSV-----GGVV-YVASGVGAHYRGDVARSMKKWDLKS-----  223 (390)
Q Consensus       164 ~~~~~~dp~t~~------W~~~~~~~~~---r~~~~~~~~-----~~~l-yv~GG~~~~~~~~~~~~~~~yd~~t-----  223 (390)
                      ..+.+||..+++      +..+......   ..-.+++..     ++.. ++.|+.+.        .+.+||..+     
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG--------TTYIWKFHPFADES  162 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS--------CEEEEEEESSSSHH
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--------cEEEEeCCcccccc
Confidence            468888987776      5555443211   122233333     4555 66666554        678888877     


Q ss_pred             -CccccccEEcccC---------CCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCC-CC---C
Q 016368          224 -DREDWKWEKKAQL---------KDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGM-HA---G  288 (390)
Q Consensus       224 -~~~~~~W~~~~~~---------~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~-~~---~  288 (390)
                       ... ..|.....+         ....    ..+++.. ++ +++.|+   ....+.+||..+.+-...-... ..   .
T Consensus       163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          163 NSLT-LNWSPTLELQGTVESPMTPSQF----ATSVDISERG-LIATGF---NNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             HHTT-TCCCCEEEEEEEECCSSSSCCC----CCEEEECTTS-EEEEEC---TTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             ccce-eeccCcceeeeeeccccCCCCC----ceEEEECCCc-eEEEEe---CCCcEEEEECCCCceeEEEeccccccccC
Confidence             330 012111111         1111    1333333 45 555531   2345778998876432211100 01   1


Q ss_pred             CCCceEEEeeCCeEEEEeCCC---CcEEEEECCCCceEEcccccc-------------cccce-eEEEE-CCEEEEEeeC
Q 016368          289 WNGPAASTMNEEELYVVNEGK---GRLSKYDADHDWWDEVIELAE-------------LKGAE-KITAA-RGRVCAVCEN  350 (390)
Q Consensus       289 ~~~~~~~~~~~g~lyv~gg~~---~~v~~yd~~~~~W~~i~~~p~-------------~r~~~-~~~~~-~g~l~i~g~~  350 (390)
                      .....++...++.+++.++.+   +.+..||..+.+-  +..+..             ..... .+... ++++++.|+.
T Consensus       234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            112233322478888888877   8999999886542  222222             22222 23333 5777777777


Q ss_pred             CceEEEEEcCCC
Q 016368          351 GERIMVVDVLAS  362 (390)
Q Consensus       351 ~~~v~~~d~~~~  362 (390)
                      ++.+.+||+.+.
T Consensus       312 dg~i~iwd~~~~  323 (397)
T 1sq9_A          312 DGKLRFWDVKTK  323 (397)
T ss_dssp             TSEEEEEETTTT
T ss_pred             CCeEEEEEcCCC
Confidence            889999999765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.19  E-value=0.24  Score=44.18  Aligned_cols=204  Identities=10%  Similarity=0.154  Sum_probs=97.7

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-C--CEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-G--GVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      +.+++.++..       ..+.+||..+++|..+..+...... .+++.. +  +.+++.|+.+.        .+.+||..
T Consensus        71 ~~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD-------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT-------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECC-------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            4555555432       4688899988776543322211111 122222 2  55666666654        67788887


Q ss_pred             CC-ccccccEEcccCCCCCccccceEEEEE------------------CCEEEEEcccCCCCceeEEEeCCC-CCeEecC
Q 016368          223 SD-REDWKWEKKAQLKDGRFSREAVEAVGF------------------KGNLCMVNLKGNGAKDGAIYNVEL-DKWKEMP  282 (390)
Q Consensus       223 t~-~~~~~W~~~~~~~~~~~~r~~~~~~~~------------------~g~lyv~gg~g~~~~~~~~yd~~~-~~W~~~~  282 (390)
                      +. .    |.....+......  ..+++..                  .+++++.|+   ....+.++|..+ +.|..+.
T Consensus       136 ~~~~----~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~  206 (316)
T 3bg1_A          136 GEGQ----WEVKKINNAHTIG--CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQ  206 (316)
T ss_dssp             SSSC----EEECCBTTSSSSC--BCCCEECCCCCC------CCSCCCCCCCBEECCB---TTSBCCEEEECTTSCEEEEE
T ss_pred             CCCC----cceeeeeccccCC--cceEEEccccCCccccccccccCccccceEEEec---CCCeEEEEEeCCCCccceee
Confidence            65 4    6543322111000  0111110                  123444431   123456788763 4576654


Q ss_pred             CCCCCCCCCc--eEEEeeC----CeEEEEeCCCCcEEEEECCC---CceEEccccccccc-ceeEEEE-CCEEEEEeeCC
Q 016368          283 EGMHAGWNGP--AASTMNE----EELYVVNEGKGRLSKYDADH---DWWDEVIELAELKG-AEKITAA-RGRVCAVCENG  351 (390)
Q Consensus       283 ~~~~~~~~~~--~~~~~~~----g~lyv~gg~~~~v~~yd~~~---~~W~~i~~~p~~r~-~~~~~~~-~g~l~i~g~~~  351 (390)
                      . +. +....  .++...+    +.+++.++.++.+..||..+   ..|.... +..... ...++.. ++.+++.++.+
T Consensus       207 ~-l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~las~~~D  283 (316)
T 3bg1_A          207 K-LE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL-LHKFNDVVWHVSWSITANILAVSGGD  283 (316)
T ss_dssp             C-CB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE-EEECSSCEEEEEECTTTCCEEEEESS
T ss_pred             e-cc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh-hhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence            4 22 12222  2221123    37788888899999999875   3343211 111111 2233333 57777777777


Q ss_pred             ceEEEEEcCCCCCcceE-e---cCCCCeeEEE
Q 016368          352 ERIMVVDVLASPARAWL-V---DPPRGFQVVA  379 (390)
Q Consensus       352 ~~v~~~d~~~~~~~~W~-~---~~p~g~~~~~  379 (390)
                      ..|.+||....  ..|. +   ..++|+.+-+
T Consensus       284 ~~v~lw~~~~~--g~~~~~~~~~~~~~~~~~~  313 (316)
T 3bg1_A          284 NKVTLWKESVD--GQWVCISDVNKGQGSVSAS  313 (316)
T ss_dssp             SCEEEEEECTT--SCEEEEEECC---------
T ss_pred             CeEEEEEECCC--CcEEEeeeccCCCCceeee
Confidence            88999998643  2676 2   2345554433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.17  E-value=0.84  Score=42.59  Aligned_cols=176  Identities=13%  Similarity=0.062  Sum_probs=95.6

Q ss_pred             CcEEEeCCCCce-ecCCCCC--CCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC---
Q 016368          165 SPLAFNPQSNTW-FFGPQLS--IPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL---  236 (390)
Q Consensus       165 ~~~~~dp~t~~W-~~~~~~~--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~---  236 (390)
                      .++++++.++.- ..+....  ....-+++++.  ++.||+.-.         ...+.+||+.+..    -..+...   
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---------~~~I~~~d~~~~~----~~~~~~~~~~  261 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---------NKNFGRFNVKTQE----VTLIKQLELS  261 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---------TCEEEEEETTTCC----EEEEEECCCC
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---------CCcEEEEECCCCC----EEEEeccccc
Confidence            788899875532 2231111  11111233333  688999321         2378999998876    5544211   


Q ss_pred             CCCCccccc-e-EEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCC----CCC-----C-CCCc-eEEEeeCCe
Q 016368          237 KDGRFSREA-V-EAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG----MHA-----G-WNGP-AASTMNEEE  301 (390)
Q Consensus       237 ~~~~~~r~~-~-~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~----~~~-----~-~~~~-~~~~~~~g~  301 (390)
                      .....   . . .+++.  ++.+|+..   .....+.+||.....-......    ...     . ...+ ++++..+|.
T Consensus       262 g~~~~---~P~~~ia~~p~~g~lyv~d---~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          262 GSLGT---NPGPYLIYYFVDSNFYMSD---QNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             SCCCC---SSCCEEEEETTTTEEEEEE---TTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             CCCCC---CccccEEEeCCCCEEEEEe---CCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence            11111   1 2 45554  58999982   2345677888765421111110    000     0 1112 344334688


Q ss_pred             EEEEeC-CCCcEEEEECCCCceEEccccc-------------ccccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          302 LYVVNE-GKGRLSKYDADHDWWDEVIELA-------------ELKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       302 lyv~gg-~~~~v~~yd~~~~~W~~i~~~p-------------~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      ||+... .++.|.+||+.+..-..+...+             ......++++. +|.|||.-..++.|..+++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999998 7889999996666555443221             01234556665 5889998666677777764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.17  E-value=0.35  Score=42.76  Aligned_cols=177  Identities=5%  Similarity=-0.083  Sum_probs=86.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE-EcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE-KKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~-~~~~~~~~~~  241 (390)
                      ..+.+||..+++-...-....... .++... ++++++.|+.+.        .+.+||..++.    -. .+.. ... .
T Consensus        35 g~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~s~d~--------~i~vwd~~~~~----~~~~~~~-h~~-~   99 (304)
T 2ynn_A           35 GRVELWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE----KVVDFEA-HPD-Y   99 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETTS--------EEEEEETTTCC----EEEEEEC-CSS-C
T ss_pred             CcEEEEECCCCceeEEeeccCCcE-EEEEEeCCCCEEEEECCCC--------EEEEEECCCCc----EEEEEeC-CCC-c
Confidence            468889988765322111111111 122222 556666666654        78899998876    21 1111 111 1


Q ss_pred             cccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~  319 (390)
                         -.+++.. ++++.+.|+   ....+.+||..++. ..............+++... ++.+++.|+.++.+..||..+
T Consensus       100 ---v~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          100 ---IRSIAVHPTKPYVLSGS---DDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             ---EEEEEECSSSSEEEEEE---TTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             ---EEEEEEcCCCCEEEEEC---CCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence               1233332 455555531   23456788876542 11111001111112222211 567888999999999999865


Q ss_pred             CceEEcccccccccceeEEEE---CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELKGAEKITAA---RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..=..............+...   ++.+++.|+.+..|.+||+.+.
T Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            431111100111111112221   4556667677778999998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.16  E-value=0.16  Score=45.51  Aligned_cols=180  Identities=10%  Similarity=-0.032  Sum_probs=96.8

Q ss_pred             CcEEEeCCCCceecCCCCCCC---CcceEEEEE--CCEEEEEeccCCCC---------CCCccCeEEEEECCCCcccccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIP---RRWCAMGSV--GGVVYVASGVGAHY---------RGDVARSMKKWDLKSDREDWKW  230 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~---r~~~~~~~~--~~~lyv~GG~~~~~---------~~~~~~~~~~yd~~t~~~~~~W  230 (390)
                      .+.++|+.+++.+.+......   ..-..+++.  +|.||+.-......         .......+++||+.+..    .
T Consensus       102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~----~  177 (322)
T 2fp8_A          102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE----T  177 (322)
T ss_dssp             EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE----E
T ss_pred             CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE----E
Confidence            488899887765544321111   111223333  57899874321000         00123468999998877    5


Q ss_pred             EEccc-CCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCC---CeEecCCCCCCCCCCceEEEeeCCeEEE
Q 016368          231 EKKAQ-LKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELD---KWKEMPEGMHAGWNGPAASTMNEEELYV  304 (390)
Q Consensus       231 ~~~~~-~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~g~lyv  304 (390)
                      +.+.. +..      ...++.. +| .+|+.-   .....+.+||+...   +.+.... .+ +  ...+++..+|.||+
T Consensus       178 ~~~~~~~~~------p~gia~~~dg~~lyv~d---~~~~~I~~~~~~~~~~~~~~~~~~-~~-g--P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          178 TLLLKELHV------PGGAEVSADSSFVLVAE---FLSHQIVKYWLEGPKKGTAEVLVK-IP-N--PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEEEEEESC------CCEEEECTTSSEEEEEE---GGGTEEEEEESSSTTTTCEEEEEE-CS-S--EEEEEECTTSCEEE
T ss_pred             EEeccCCcc------CcceEECCCCCEEEEEe---CCCCeEEEEECCCCcCCccceEEe-CC-C--CCCeEECCCCCEEE
Confidence            54322 111      1334433 44 488872   12356788998753   3333222 21 1  12344334688998


Q ss_pred             EeCC----------CCcEEEEECCCCceEEcccccc---cccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          305 VNEG----------KGRLSKYDADHDWWDEVIELAE---LKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       305 ~gg~----------~~~v~~yd~~~~~W~~i~~~p~---~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....          .+.+.+||+....-..+. .+.   .....+++..+|+|||.+..++.|.++++..+
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred             EecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCccccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence            7643          357999999754444443 221   12334455568999998767788999998654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.16  E-value=0.15  Score=44.87  Aligned_cols=153  Identities=9%  Similarity=0.015  Sum_probs=86.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      .+++++.|..+        ..+.++|.++++.  .|+.-..-... .   ....+.-+|++++.     ....+..||++
T Consensus         4 ~~~~lv~~~~~--------~~v~~~d~~tG~~--~w~~~~~~~~~-~---~~~~~~pdG~ilvs-----~~~~V~~~d~~   64 (276)
T 3no2_A            4 PQHLLVGGSGW--------NKIAIINKDTKEI--VWEYPLEKGWE-C---NSVAATKAGEILFS-----YSKGAKMITRD   64 (276)
T ss_dssp             CCEEEEECTTC--------SEEEEEETTTTEE--EEEEECCTTCC-C---CEEEECTTSCEEEE-----CBSEEEEECTT
T ss_pred             CCcEEEeeCCC--------CEEEEEECCCCeE--EEEeCCCccCC-C---cCeEECCCCCEEEe-----CCCCEEEECCC
Confidence            46777776554        3788999988773  37654322111 1   13334458888885     45668899984


Q ss_pred             CC-CeEecCCCCCCCCCCceEEEeeCCeEEEEeCC-CCcEEEEECCCCc-eEEcc--ccccc-cccee-EEEECCEEEEE
Q 016368          275 LD-KWKEMPEGMHAGWNGPAASTMNEEELYVVNEG-KGRLSKYDADHDW-WDEVI--ELAEL-KGAEK-ITAARGRVCAV  347 (390)
Q Consensus       275 ~~-~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~-~~~v~~yd~~~~~-W~~i~--~~p~~-r~~~~-~~~~~g~l~i~  347 (390)
                      .+ .|+.-..   ......++....+|++++.... .+.++.+|++... |+.-.  ..+.. ..... ....+|.+++.
T Consensus        65 G~~~W~~~~~---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           65 GRELWNIAAP---AGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             SCEEEEEECC---TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             CCEEEEEcCC---CCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence            32 5765432   1111122333368888887765 6688999986542 43221  11111 11112 23336677766


Q ss_pred             eeCCceEEEEEcCCCCCcceEecC
Q 016368          348 CENGERIMVVDVLASPARAWLVDP  371 (390)
Q Consensus       348 g~~~~~v~~~d~~~~~~~~W~~~~  371 (390)
                      ...+..|.++|...+  ..|+...
T Consensus       142 ~~~~~~v~~~d~~G~--~~w~~~~  163 (276)
T 3no2_A          142 LFATSEVREIAPNGQ--LLNSVKL  163 (276)
T ss_dssp             ETTTTEEEEECTTSC--EEEEEEC
T ss_pred             ecCCCEEEEECCCCC--EEEEEEC
Confidence            566678889988733  4677543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.15  E-value=0.2  Score=45.89  Aligned_cols=186  Identities=9%  Similarity=0.034  Sum_probs=95.1

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCC-----------CCCCcc-eEEEEE--CCEEEEEeccCCCCCCCc
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQL-----------SIPRRW-CAMGSV--GGVVYVASGVGAHYRGDV  212 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~-----------~~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~  212 (390)
                      +.+++.|+.       -..+.+||..+.+.......           ...... .+++..  ++.+++.|+.+.      
T Consensus        56 ~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------  122 (408)
T 4a11_B           56 GRYMLSGGS-------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK------  122 (408)
T ss_dssp             CCEEEEEET-------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS------
T ss_pred             CCEEEEEcC-------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC------
Confidence            455555543       24688899887654332110           001111 222222  445666766554      


Q ss_pred             cCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE----CCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCC
Q 016368          213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF----KGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHA  287 (390)
Q Consensus       213 ~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~----~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~  287 (390)
                        .+.+||..+..    -..........     ......    ++.+.+.|+   ....+.+||+.+.+-.. +..   .
T Consensus       123 --~i~iwd~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~v~~~d~~~~~~~~~~~~---~  185 (408)
T 4a11_B          123 --TLKVWDTNTLQ----TADVFNFEETV-----YSHHMSPVSTKHCLVAVGT---RGPKVQLCDLKSGSCSHILQG---H  185 (408)
T ss_dssp             --EEEEEETTTTE----EEEEEECSSCE-----EEEEECSSCSSCCEEEEEE---SSSSEEEEESSSSCCCEEECC---C
T ss_pred             --eEEEeeCCCCc----cceeccCCCce-----eeeEeecCCCCCcEEEEEc---CCCeEEEEeCCCcceeeeecC---C
Confidence              78899998876    33333222211     222221    334555532   23457789987654221 111   1


Q ss_pred             CCCCceEEEeeCCe-EEEEeCCCCcEEEEECCCCc--eEEccc------------ccccccce-eEEEE-CCEEEEEeeC
Q 016368          288 GWNGPAASTMNEEE-LYVVNEGKGRLSKYDADHDW--WDEVIE------------LAELKGAE-KITAA-RGRVCAVCEN  350 (390)
Q Consensus       288 ~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~~--W~~i~~------------~p~~r~~~-~~~~~-~g~l~i~g~~  350 (390)
                      .....+++...++. +++.|+.++.+..||..+..  ...+..            ........ .+... +++.++.++.
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            11112233223444 78888889999999987643  222210            01112222 23333 6667777777


Q ss_pred             CceEEEEEcCCC
Q 016368          351 GERIMVVDVLAS  362 (390)
Q Consensus       351 ~~~v~~~d~~~~  362 (390)
                      ++.+.+||+.+.
T Consensus       266 dg~i~vwd~~~~  277 (408)
T 4a11_B          266 DNRMRLWNSSNG  277 (408)
T ss_dssp             TSCEEEEETTTC
T ss_pred             CCeEEEEECCCC
Confidence            789999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.14  E-value=0.34  Score=44.28  Aligned_cols=199  Identities=8%  Similarity=0.002  Sum_probs=99.2

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCc----eecCCCCCCCC-cceEEEEE-C----C---EEEEEeccCCC
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNT----WFFGPQLSIPR-RWCAMGSV-G----G---VVYVASGVGAH  207 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~----W~~~~~~~~~r-~~~~~~~~-~----~---~lyv~GG~~~~  207 (390)
                      .+++....+++.++..       ..+.+||..+.+    +..+..+.... .-.++... +    +   ++++.|+.+. 
T Consensus        20 ~~~~~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg-   91 (397)
T 1sq9_A           20 FSVSACNSFTVSCSGD-------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG-   91 (397)
T ss_dssp             EEEEECSSEEEEEETT-------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS-
T ss_pred             EEEEecCCeEEEEcCC-------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC-
Confidence            5566666666666532       468889988776    22222221111 11222222 4    6   7777777654 


Q ss_pred             CCCCccCeEEEEECCCCccc--cccEEcccCC----CCCccccceEEEEE-----CCEE-EEEcccCCCCceeEEEeCCC
Q 016368          208 YRGDVARSMKKWDLKSDRED--WKWEKKAQLK----DGRFSREAVEAVGF-----KGNL-CMVNLKGNGAKDGAIYNVEL  275 (390)
Q Consensus       208 ~~~~~~~~~~~yd~~t~~~~--~~W~~~~~~~----~~~~~r~~~~~~~~-----~g~l-yv~gg~g~~~~~~~~yd~~~  275 (390)
                             .+.+||..+....  ..+..+....    ...    ..+++..     ++.. ++.|+   ....+.+||..+
T Consensus        92 -------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~  157 (397)
T 1sq9_A           92 -------DLLFYRITREDETKKVIFEKLDLLDSDMKKHS----FWALKWGASNDRLLSHRLVATD---VKGTTYIWKFHP  157 (397)
T ss_dssp             -------CEEEEEEEECTTTCCEEEEEECCSCTTGGGSC----EEEEEEECCC----CEEEEEEE---TTSCEEEEEEES
T ss_pred             -------CEEEEEccCCcccccccceeecccccccCCCc----EEEEEEeeccCCCCceEEEEEe---CCCcEEEEeCCc
Confidence                   6788888766500  0022222221    111    1333333     4555 55532   224466787766


Q ss_pred             ------CC---eEecCCC-------CCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccc-ccc---ccce
Q 016368          276 ------DK---WKEMPEG-------MHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIEL-AEL---KGAE  335 (390)
Q Consensus       276 ------~~---W~~~~~~-------~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~-p~~---r~~~  335 (390)
                            .+   |......       ........++....++ +++.++.++.+..||..+.+-...-.. ...   ....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                  21   1110010       0011122333332456 888888889999999987643322211 001   2222


Q ss_pred             e-EEEE-CCEEEEEeeCC---ceEEEEEcCCC
Q 016368          336 K-ITAA-RGRVCAVCENG---ERIMVVDVLAS  362 (390)
Q Consensus       336 ~-~~~~-~g~l~i~g~~~---~~v~~~d~~~~  362 (390)
                      . +... ++++++.++.+   ..+.+||+.+.
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            2 3332 56777776666   78999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.2  Score=45.04  Aligned_cols=179  Identities=10%  Similarity=-0.003  Sum_probs=89.2

Q ss_pred             CCcEEEeCCC--CceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQS--NTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t--~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||...  ..++.+..+.........+..  ++.+++.|+.+.        .+.+||..++.    |+.+..+...
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~~~~~----~~~~~~~~~h  196 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--------TVRIWKDYDDD----WECVAVLNGH  196 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEEETTE----EEEEEEECCC
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--------eEEEEECCCCC----eeEEEEccCC
Confidence            3678888743  233332222211111222222  566777777654        67788887776    7665544321


Q ss_pred             CccccceEEEEEC---CEEEEEcccCCCCceeEEEeCCC------CCeEecCCCCCC--CCCCceEEEeeCCeEEEEeCC
Q 016368          240 RFSREAVEAVGFK---GNLCMVNLKGNGAKDGAIYNVEL------DKWKEMPEGMHA--GWNGPAASTMNEEELYVVNEG  308 (390)
Q Consensus       240 ~~~r~~~~~~~~~---g~lyv~gg~g~~~~~~~~yd~~~------~~W~~~~~~~~~--~~~~~~~~~~~~g~lyv~gg~  308 (390)
                      ...  -.++....   +...+.|+   ....+.+||..+      ..|..... .+.  ......++. ..+.+++.++.
T Consensus       197 ~~~--v~~~~~~~~~~~~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~-s~~~~l~s~~~  269 (330)
T 2hes_X          197 EGT--VWSSDFDKTEGVFRLCSGS---DDSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVYNVAW-GFNGLIASVGA  269 (330)
T ss_dssp             SSC--EEEEEECCSSSSCEEEEEE---TTSCEEEEEEEEECTTSCEEEEEEEE-CCSCCSSCEEEEEE-CTTSCEEEEET
T ss_pred             CCc--EEEEEecCCCCeeEEEEEe---CCCeEEEEEecCCCccccceeEEeee-cccccccceEEEEE-cCCCEEEEEeC
Confidence            110  12222222   33333331   223355666543      23544332 221  111223332 34556777888


Q ss_pred             CCcEEEEECCCCceEEcccccc-ccc-ceeEEEE----CCEEEEEeeCCceEEEEEcCC
Q 016368          309 KGRLSKYDADHDWWDEVIELAE-LKG-AEKITAA----RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       309 ~~~v~~yd~~~~~W~~i~~~p~-~r~-~~~~~~~----~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ++.+..||..+..|..+..... ... ....+.+    ++.+++.|+.+..|.+||+.+
T Consensus       270 dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          270 DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            8999999998888876543321 221 2222222    466777777788999999764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.09  E-value=0.44  Score=48.66  Aligned_cols=175  Identities=8%  Similarity=0.006  Sum_probs=96.1

Q ss_pred             CCcEEEeCCCCceecCCCCC--CCC-cceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC--
Q 016368          164 ASPLAFNPQSNTWFFGPQLS--IPR-RWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK--  237 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~--~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~--  237 (390)
                      ..+.+||+.+++++......  .+. .-.++... ++.|++...          ..+.+||+.++.    |+......  
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~----~~~~~~~~~~  492 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL----------SALVRFNPEQRS----FTTIEKEKDG  492 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES----------SCEEEEETTTTE----EEECCBCTTC
T ss_pred             CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec----------CceeEEeCCCCe----EEEccccccc
Confidence            46889999998887654311  111 11222222 567777532          357899999998    88765331  


Q ss_pred             CCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCC--CC-CC-CCCceEEEeeCCeEEEEeCCCCcE
Q 016368          238 DGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG--MH-AG-WNGPAASTMNEEELYVVNEGKGRL  312 (390)
Q Consensus       238 ~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~--~~-~~-~~~~~~~~~~~g~lyv~gg~~~~v  312 (390)
                      .........+.+. -+|.+++-.     .....+||+.++++ .....  .. .+ ....+++...+|.|++-..  +.+
T Consensus       493 ~~~~~~~i~~i~~d~~g~lWigt-----~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl  564 (795)
T 4a2l_A          493 TPVVSKQITTLFRDSHKRLWIGG-----EEGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGF  564 (795)
T ss_dssp             CBCCCCCEEEEEECTTCCEEEEE-----SSCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCE
T ss_pred             cccCCceEEEEEECCCCCEEEEe-----CCceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCc
Confidence            1100000122332 356777753     23467899988887 43210  00 11 1112223224678876543  378


Q ss_pred             EEEECCCCceEEccccccccc--ceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIELAELKG--AEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~p~~r~--~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+||++++++...........  ..+++.- +|.|++-+  .+.+..+|+.+.
T Consensus       565 ~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          565 YCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             EEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             eeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence            999999998887653221111  2233333 67888864  356778887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.07  E-value=0.13  Score=52.45  Aligned_cols=177  Identities=5%  Similarity=-0.071  Sum_probs=91.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+||..+++....-...... -.+++.. +++.+++|+.+.        .+.+||..++.    ....-......  
T Consensus        35 g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~~----~~~~~~~~~~~--   99 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE----KVVDFEAHPDY--   99 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETTS--------EEEEEETTTCC----EEEEEECCSSC--
T ss_pred             CEEEEEECCCCceEEEEecCCCc-EEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEEecCCCC--
Confidence            46889998877543211111111 1122222 566666666543        78999998877    43222111111  


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCC
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~  319 (390)
                        ..+++. -+++..+.|+   ....+.+||..++ .....-.  .......+++... ++.+++.++.++.+..||..+
T Consensus       100 --v~~~~~s~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          100 --IRSIAVHPTKPYVLSGS---DDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             --EEEEEECSSSSEEEEEE---TTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             --EEEEEEeCCCCEEEEEc---CCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence              122332 2555444431   2345778988765 2222111  1111112223213 678888898899999999876


Q ss_pred             CceEEcccccccccceeEEEE---CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAELKGAEKITAA---RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..-..............+...   ++..++.|+.+..+.+||+.+.
T Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            543222111111222222222   6677777777778999998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.06  E-value=0.45  Score=42.25  Aligned_cols=166  Identities=8%  Similarity=0.032  Sum_probs=91.6

Q ss_pred             eecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECC
Q 016368          176 WFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKG  253 (390)
Q Consensus       176 W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g  253 (390)
                      .+.+..++.+..-.+.++. +++||+.-..        ...+.+||+.+..     ......+.  .   .+++++ -+|
T Consensus        22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~--------~~~I~~~d~~g~~-----~~~~~~~~--~---p~gia~~~dG   83 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAPDGTIFVTNHE--------VGEIVSITPDGNQ-----QIHATVEG--K---VSGLAFTSNG   83 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSCEEEEETT--------TTEEEEECTTCCE-----EEEEECSS--E---EEEEEECTTS
T ss_pred             ceEeEeCCCCCCcceEEECCCCCEEEEeCC--------CCeEEEECCCCce-----EEEEeCCC--C---ceeEEEcCCC
Confidence            3333333333333344442 6778887432        2478899987653     22222221  1   144443 367


Q ss_pred             EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc---eEEcccc--
Q 016368          254 NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW---WDEVIEL--  328 (390)
Q Consensus       254 ~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~---W~~i~~~--  328 (390)
                      ++|+.... .....+..||+.+++.+.+.. .+..+.....+...++.+|+.....+.++++|+.+..   |..-..+  
T Consensus        84 ~l~vad~~-~~~~~v~~~d~~~g~~~~~~~-~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           84 DLVATGWN-ADSIPVVSLVKSDGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             CEEEEEEC-TTSCEEEEEECTTSCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             cEEEEecc-CCcceEEEEcCCCCeEEEEEe-CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            89887311 112346788988888776544 2233332333332466788877667799999987642   2211111  


Q ss_pred             ----cccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368          329 ----AELKGAEKITAARGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       329 ----p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~  361 (390)
                          .......++..-++.||+.-...+.|+++|+..
T Consensus       162 ~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          162 SNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             SSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             ccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence                111223345334668999866677999999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.06  E-value=0.15  Score=45.20  Aligned_cols=170  Identities=8%  Similarity=-0.009  Sum_probs=85.7

Q ss_pred             CCcEEEeCCCCceecCCCCCC--CCcceEEEEE--CCEEEEEeccCCCC---CCCccCeEEEEECCCCccccccEEccc-
Q 016368          164 ASPLAFNPQSNTWFFGPQLSI--PRRWCAMGSV--GGVVYVASGVGAHY---RGDVARSMKKWDLKSDREDWKWEKKAQ-  235 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~--~r~~~~~~~~--~~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~~~~~W~~~~~-  235 (390)
                      +.+++||+.+++++.+.....  +........+  +|++|+..-.....   .......++.+|+.. .    ...+.. 
T Consensus        73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~----~~~~~~~  147 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-H----VKKYFDQ  147 (297)
T ss_dssp             TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-C----EEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-C----EEEEeec
Confidence            478999999998876543321  2222222333  67888743221100   011234677888753 3    333221 


Q ss_pred             CCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeC--CCCCeEec---CCCCCC-CCCCceEEEeeCCeEEEEeC
Q 016368          236 LKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNV--ELDKWKEM---PEGMHA-GWNGPAASTMNEEELYVVNE  307 (390)
Q Consensus       236 ~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~--~~~~W~~~---~~~~~~-~~~~~~~~~~~~g~lyv~gg  307 (390)
                      +..      ..+.+.. ++ .+|+..   .....+.+||.  ++.+....   .. .+. ...-..+++..+|.||+...
T Consensus       148 ~~~------pngi~~spdg~~lyv~~---~~~~~i~~~~~d~~~G~~~~~~~~~~-~~~~~~~p~g~~~d~~G~lwva~~  217 (297)
T 3g4e_A          148 VDI------SNGLDWSLDHKIFYYID---SLSYSVDAFDYDLQTGQISNRRSVYK-LEKEEQIPDGMCIDAEGKLWVACY  217 (297)
T ss_dssp             ESB------EEEEEECTTSCEEEEEE---GGGTEEEEEEECTTTCCEEEEEEEEE-CCGGGCEEEEEEEBTTSCEEEEEE
T ss_pred             ccc------ccceEEcCCCCEEEEec---CCCCcEEEEeccCCCCcccCcEEEEE-CCCCCCCCCeeEECCCCCEEEEEc
Confidence            111      1333332 44 588873   12345677775  45544211   11 111 01112344335789998876


Q ss_pred             CCCcEEEEECCCCceEEcccccccccceeEEEE---CCEEEEEee
Q 016368          308 GKGRLSKYDADHDWWDEVIELAELKGAEKITAA---RGRVCAVCE  349 (390)
Q Consensus       308 ~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~  349 (390)
                      ..+.|.+||+++.+....-.+|.. ...+++..   ++.|||...
T Consensus       218 ~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          218 NGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred             CCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence            667899999997765544444422 22223322   247888763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.05  E-value=0.89  Score=41.79  Aligned_cols=181  Identities=7%  Similarity=-0.077  Sum_probs=93.9

Q ss_pred             CCcEEEeCCCC-ce-ecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE-----Ec
Q 016368          164 ASPLAFNPQSN-TW-FFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE-----KK  233 (390)
Q Consensus       164 ~~~~~~dp~t~-~W-~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~-----~~  233 (390)
                      ..+.+||.... +. ..+..+......-....+   ++.+++.|+.+.        .+.+||..++.    ..     .+
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg--------~v~vw~~~~~~----~~~~~~~~~  124 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC--------TVMVWEIPDGG----LVLPLREPV  124 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS--------EEEEEECCTTC----CSSCBCSCS
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC--------eEEEEEccCCC----CccccCCce
Confidence            46888887543 22 112222211222222222   566777777654        78899998875    31     11


Q ss_pred             ccCCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368          234 AQLKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       234 ~~~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      ..+.....  ...+++.. ++ .+++.|+   ....+.+||..+.+....-..........+++...++.+++.++.++.
T Consensus       125 ~~~~~h~~--~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          125 ITLEGHTK--RVGIVAWHPTAQNVLLSAG---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             EEEECCSS--CEEEEEECSSBTTEEEEEE---TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred             EEecCCCC--eEEEEEECcCCCCEEEEEc---CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence            11111100  01223332 33 3555532   234577899988754432100011111223332247888888888999


Q ss_pred             EEEEECCCCceEEccccccccc--ceeEEEE-CCEEEEEe---eCCceEEEEEcCCC
Q 016368          312 LSKYDADHDWWDEVIELAELKG--AEKITAA-RGRVCAVC---ENGERIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~~p~~r~--~~~~~~~-~g~l~i~g---~~~~~v~~~d~~~~  362 (390)
                      +..||+.+.+-..... .....  ...+... ++++++.|   ..+..+.+||+.+.
T Consensus       200 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          200 VRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            9999998765332210 11111  2233333 78888886   46778999998774

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.03  E-value=0.67  Score=47.32  Aligned_cols=178  Identities=12%  Similarity=0.018  Sum_probs=95.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+..++.....+..+...  .+.-.++++.  +++||+.-..        ...+.++++.........+.+....... 
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~--------~~~I~~~~l~g~~~~~~~~~vi~~~l~~-  472 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRDIQA-  472 (791)
T ss_dssp             SSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------CEEEECSSCSC-
T ss_pred             cceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc--------ceeEEEEeccCCCCCcceeEEEecCCCC-
Confidence            3566666665555443221  1222334443  6889987432        3467777776421000033332211111 


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeCCC-CcEEEEE
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNEGK-GRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg~~-~~v~~yd  316 (390)
                         ..++++  .+++||+.   ..+...+.++++....-+.+..   .....+ ++++ ..+|.||+..... ..|++++
T Consensus       473 ---P~GLAvD~~~~~LY~t---D~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          473 ---PDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             ---CCEEEEETTTTEEEEE---ETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ---cceeeeeecCCcEEEE---ecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence               133444  46799998   3345678899988665544432   111112 3343 2368999998443 6899999


Q ss_pred             CCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +....=+.+..- ......++++-  +++||+.=.....|.++|+...
T Consensus       544 ~dG~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          544 LNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             TTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            986554444321 12234456554  7889998544567888887654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.75  Score=41.17  Aligned_cols=201  Identities=8%  Similarity=0.038  Sum_probs=98.8

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCC--CCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI--PRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSM  216 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~--~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~  216 (390)
                      .++.....+++.|+..       ..+.+||..++....+..+..  .... .+++.. ++.+++.|+.+.        .+
T Consensus        18 ~~~~~s~~~las~~~D-------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--------~v   82 (330)
T 2hes_X           18 WSFDFSQGILATGSTD-------RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS--------TV   82 (330)
T ss_dssp             EEEEEETTEEEEEESS-------SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------CE
T ss_pred             eeeccCCCEEEEEcCC-------CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------cE
Confidence            4444445555555431       467888887765433322211  1111 122222 566777777654        67


Q ss_pred             EEEECCCCcc-ccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCC--CCeEecCCCCCCCCCCc
Q 016368          217 KKWDLKSDRE-DWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVEL--DKWKEMPEGMHAGWNGP  292 (390)
Q Consensus       217 ~~yd~~t~~~-~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~  292 (390)
                      .+||...... ...++.+..+......  -.+++.. +++..+.|+   ....+.+||...  ..++.+...........
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~g~~las~s---~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENE--VKGVAWSNDGYYLATCS---RDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----C--EEEEEECTTSCEEEEEE---TTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCc--EEEEEECCCCCEEEEEe---CCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            7888753210 0003333222211110  1222222 566555532   234567888843  34443322011111111


Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--C--CEEEEEeeCCceEEEEEcCC
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--R--GRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~--g~l~i~g~~~~~v~~~d~~~  361 (390)
                      .+....++.+++.++.++.+..||..+..|..+..+.........+.+  +  +..++.|+.+..|.+||+..
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            222224788888999999999999887778776655544333322232  2  34555556677888888754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.69  Score=40.33  Aligned_cols=186  Identities=9%  Similarity=0.006  Sum_probs=90.5

Q ss_pred             ecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          145 VRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       145 ~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      .++..++.++.       -..+.+||..+++-...-.... ..-.+++.. ++++++.|+.+.        .+.+|+...
T Consensus        27 ~~~~~l~s~~~-------dg~v~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg--------~i~~~~~~~   90 (313)
T 3odt_A           27 VDDSKVASVSR-------DGTVRLWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFGGKDT--------MINGVPLFA   90 (313)
T ss_dssp             EETTEEEEEET-------TSEEEEEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEEETTS--------CEEEEETTC
T ss_pred             cCCCEEEEEEc-------CCcEEEEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEecCCC--------eEEEEEeee
Confidence            45566666543       2468889987664332211111 111222222 566777776654        566777655


Q ss_pred             CccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEE-eeCCeE
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAST-MNEEEL  302 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~g~l  302 (390)
                      ...   .+.+..+.....   ....+.+++.+++.|+   ....+.+||...........    ......+.. ..++..
T Consensus        91 ~~~---~~~~~~~~~~~~---~i~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~----~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           91 TSG---EDPLYTLIGHQG---NVCSLSFQDGVVISGS---WDKTAKVWKEGSLVYNLQAH----NASVWDAKVVSFSENK  157 (313)
T ss_dssp             CTT---SCC-CEECCCSS---CEEEEEEETTEEEEEE---TTSEEEEEETTEEEEEEECC----SSCEEEEEEEETTTTE
T ss_pred             cCC---CCcccchhhccc---CEEEEEecCCEEEEEe---CCCCEEEEcCCcEEEecccC----CCceeEEEEccCCCCE
Confidence            431   222222221111   1223333555555531   23456788833222222111    111112222 127888


Q ss_pred             EEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          303 YVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       303 yv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.++.++.+..||.... -..+. .........+... ++. ++.|+.+..+.+||+.+.
T Consensus       158 l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          158 FLTASADKTIKLWQNDKV-IKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             EEEEETTSCEEEEETTEE-EEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             EEEEECCCCEEEEecCce-EEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            888988999999993321 11111 1111122233333 666 666677779999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.99  E-value=0.82  Score=40.94  Aligned_cols=186  Identities=12%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC-----
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK-----  237 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~-----  237 (390)
                      +.++++|+.+++.........-..-.++++. +++||+.....        ..+.+||+......  -..+....     
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~--------~~v~~~~~~g~~~~--~~~~~~~~~~g~~  138 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVAL--------HQVFKLDPHSKEGP--LLILGRSMQPGSD  138 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTT--------TEEEEECTTCSSCC--SEEESBTTBCCCS
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCC--------CEEEEEeCCCCeEE--EEEecccCCCCCC
Confidence            3689999988765432110000111233333 67899875433        37889998765100  22222110     


Q ss_pred             CCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCC------CCCCCCc-eEEEeeC-CeEEEEeC
Q 016368          238 DGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGM------HAGWNGP-AASTMNE-EELYVVNE  307 (390)
Q Consensus       238 ~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~------~~~~~~~-~~~~~~~-g~lyv~gg  307 (390)
                      ..... ....+++.  ++.+|+...  .+...+.+||.....-..+...-      +.....+ ++++..+ |.||+...
T Consensus       139 ~~~~~-~P~~ia~~~~~g~lyv~d~--~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          139 QNHFC-QPTDVAVEPSTGAVFVSDG--YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             TTCCS-SEEEEEECTTTCCEEEEEC--SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred             ccccC-CCcEEEEeCCCCeEEEEeC--CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence            00010 02445544  689999942  13456788996544333332100      0111112 3443234 89999998


Q ss_pred             CCCcEEEEECCCCceEEccccc-ccccceeEEEECCEEEEEe-------eCCceEEEEEcCCC
Q 016368          308 GKGRLSKYDADHDWWDEVIELA-ELKGAEKITAARGRVCAVC-------ENGERIMVVDVLAS  362 (390)
Q Consensus       308 ~~~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~~g~l~i~g-------~~~~~v~~~d~~~~  362 (390)
                      .++.|.+||+++.+....-..+ ......+++...+.+|...       .....+.++|..+.
T Consensus       216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence            8889999999866654432222 1112222322233444332       23447888887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.67  Score=41.66  Aligned_cols=151  Identities=11%  Similarity=0.036  Sum_probs=81.9

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc--cCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA--QLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~--~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      ++.+++.||.+.        .+.+||..++..   -..+.  ....-.... ....+..++.+.+..    ......+||
T Consensus        47 d~~~l~sg~~Dg--------~v~iwd~~~~~~---~~~~~~~~v~~~~~~~-~~~s~s~D~~i~~w~----~~~~~~~~~  110 (343)
T 3lrv_A           47 DKWVCMCRCEDG--------ALHFTQLKDSKT---ITTITTPNPRTGGEHP-AIISRGPCNRLLLLY----PGNQITILD  110 (343)
T ss_dssp             EEEEEEEEEETT--------EEEEEEESSSSC---EEEEEEECCCTTCCCC-SEEEECSTTEEEEEE----TTTEEEEEE
T ss_pred             CCCEEEEECCCC--------cEEEEECCCCcE---EEEEecCCceeeeeCC-ceEEecCCCeEEEEE----ccCceEEee
Confidence            556777777765        788888877651   11111  111000100 122223466666663    233456788


Q ss_pred             CCCCC-eEecCCCCCCCCCCceEEEee--CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEe
Q 016368          273 VELDK-WKEMPEGMHAGWNGPAASTMN--EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVC  348 (390)
Q Consensus       273 ~~~~~-W~~~~~~~~~~~~~~~~~~~~--~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g  348 (390)
                      ..+.+ -..... . .......+....  ++.+++.++.++.+..||..+.+-..+..........++... ++.+++.|
T Consensus       111 ~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          111 SKTNKVLREIEV-D-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             TTTCCEEEEEEC-C-CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             cCCcceeEEeec-C-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            77765 322221 1 111111222123  678888899999999999988765433322211122233333 67788887


Q ss_pred             eCCceEEEEEcCCCC
Q 016368          349 ENGERIMVVDVLASP  363 (390)
Q Consensus       349 ~~~~~v~~~d~~~~~  363 (390)
                      +.+..|.+||+.+..
T Consensus       189 ~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          189 SPDGILDVYNLSSPD  203 (343)
T ss_dssp             CTTSCEEEEESSCTT
T ss_pred             cCCCEEEEEECCCCC
Confidence            778899999998763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.97  E-value=0.35  Score=43.37  Aligned_cols=179  Identities=8%  Similarity=-0.078  Sum_probs=92.0

Q ss_pred             CcEEEeCCCCce-ecCCCCCC---CCcceEEEEE-C----CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc
Q 016368          165 SPLAFNPQSNTW-FFGPQLSI---PRRWCAMGSV-G----GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ  235 (390)
Q Consensus       165 ~~~~~dp~t~~W-~~~~~~~~---~r~~~~~~~~-~----~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~  235 (390)
                      .+.+||..+++. ..+.....   ...-.+++.. +    +.+++.|+.+.        .+.+||..+..    -...-.
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~----~~~~~~  112 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG--------IIRIINPITMQ----CIKHYV  112 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC--------EEEEECTTTCC----EEEEEE
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC--------EEEEEEchhce----Eeeeec
Confidence            688888876543 22222111   1112222222 3    57777777654        78899988766    221111


Q ss_pred             CCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcE
Q 016368          236 LKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMH-AGWNGPAASTMNEEELYVVNEGKGRL  312 (390)
Q Consensus       236 ~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v  312 (390)
                      .....    -.+++..  ++.+++.|+   ....+.+||..+.+-...-.... .......++...++..++.++.++.+
T Consensus       113 ~~~~~----i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  185 (366)
T 3k26_A          113 GHGNA----INELKFHPRDPNLLLSVS---KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL  185 (366)
T ss_dssp             SCCSC----EEEEEECSSCTTEEEEEE---TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCc----EEEEEECCCCCCEEEEEe---CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCE
Confidence            11111    1333332  556666642   23457789998765433221011 11112223322467888888889999


Q ss_pred             EEEECCCCceEEcccc--------------------------cccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIEL--------------------------AELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~--------------------------p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..||..+.+-...-..                          .........+.+.+.+++.++.+..+.+||+.+.
T Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESST
T ss_pred             EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCc
Confidence            9999886432110000                          0011122222232556666677789999998765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.92  E-value=0.5  Score=43.54  Aligned_cols=189  Identities=8%  Similarity=0.063  Sum_probs=94.3

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ++..++.|+.       -..+.+||..+++-...-.- ....-.+++.. ++..++.|+.+.        .+.+||..++
T Consensus       134 dg~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~--------~v~iwd~~~~  197 (393)
T 1erj_A          134 DGKFLATGAE-------DRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDR--------TVRIWDLRTG  197 (393)
T ss_dssp             TSSEEEEEET-------TSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTT
T ss_pred             CCCEEEEEcC-------CCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCC--------cEEEEECCCC
Confidence            3455555543       24688999887754321110 11111222222 455556666553        7889999887


Q ss_pred             ccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEe-cCCCC--CCCCCC--ceEEEe
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGM--HAGWNG--PAASTM  297 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~--~~~~~~--~~~~~~  297 (390)
                      .    ....-.....     ..+++..  ++++++.|+   ....+.+||..+..-.. +....  ..+...  .+++..
T Consensus       198 ~----~~~~~~~~~~-----v~~~~~~~~~~~~l~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  265 (393)
T 1erj_A          198 Q----CSLTLSIEDG-----VTTVAVSPGDGKYIAAGS---LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  265 (393)
T ss_dssp             E----EEEEEECSSC-----EEEEEECSTTCCEEEEEE---TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             e----eEEEEEcCCC-----cEEEEEECCCCCEEEEEc---CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence            6    4332222211     1223332  566666642   23446789988765432 21100  011111  122223


Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcc----------ccccccc-ceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVI----------ELAELKG-AEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~----------~~p~~r~-~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+|+.++.|+.++.+..||..+..-....          .+..... ..+++.. ++..++.|+.+..|.+||+.+.
T Consensus       266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            47888889989999999998753221110          0111111 1222222 5566666677778999998765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.90  E-value=0.028  Score=51.49  Aligned_cols=149  Identities=12%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++++++.|+.+.        .+.+||..++.    |+.+..+......  -.+++.. ++++.+.|+   ....+.+||.
T Consensus        22 ~g~~l~~~~~d~--------~i~iw~~~~~~----~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s---~d~~v~vwd~   84 (377)
T 3dwl_C           22 QRTEFVTTTATN--------QVELYEQDGNG----WKHARTFSDHDKI--VTCVDWAPKSNRIVTCS---QDRNAYVYEK   84 (377)
T ss_dssp             SSSEEECCCSSS--------CBCEEEEETTE----EEECCCBCCCSSC--EEEEEECTTTCCEEEEE---TTSSEEEC--
T ss_pred             CCCEEEEecCCC--------EEEEEEccCCc----eEEEEEEecCCce--EEEEEEeCCCCEEEEEe---CCCeEEEEEc
Confidence            455566665543        67789998887    8777766432211  1233332 455555532   2345778998


Q ss_pred             CCCC-eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc-eEEcccccc-cccce-eEEEE-CCEEEEEe
Q 016368          274 ELDK-WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW-WDEVIELAE-LKGAE-KITAA-RGRVCAVC  348 (390)
Q Consensus       274 ~~~~-W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~-W~~i~~~p~-~r~~~-~~~~~-~g~l~i~g  348 (390)
                      .+.. |...............+....++++++.++.++.+..||..+.. |..+..+.. ..... .+... ++++++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            8776 54433211111111222222468888888889999999998764 544444443 23333 33333 66777777


Q ss_pred             eCCceEEEEEcC
Q 016368          349 ENGERIMVVDVL  360 (390)
Q Consensus       349 ~~~~~v~~~d~~  360 (390)
                      +.+..+.+||+.
T Consensus       165 ~~d~~i~iwd~~  176 (377)
T 3dwl_C          165 CADRKAYVLSAY  176 (377)
T ss_dssp             ESSSCEEEEEEC
T ss_pred             eCCCEEEEEEEE
Confidence            777889999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.39  Score=43.02  Aligned_cols=145  Identities=13%  Similarity=0.050  Sum_probs=76.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++.++.|+.+.        .+.+||..++.     +.+..+......  ..+++.. ++..++.++   ....+.+||.
T Consensus       186 ~~~~l~~~~~dg--------~i~i~d~~~~~-----~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~---~d~~i~v~d~  247 (369)
T 3zwl_B          186 KGKYIIAGHKDG--------KISKYDVSNNY-----EYVDSIDLHEKS--ISDMQFSPDLTYFITSS---RDTNSFLVDV  247 (369)
T ss_dssp             GGCEEEEEETTS--------EEEEEETTTTT-----EEEEEEECCSSC--EEEEEECTTSSEEEEEE---TTSEEEEEET
T ss_pred             CCCEEEEEcCCC--------EEEEEECCCCc-----EeEEEEecCCCc--eeEEEECCCCCEEEEec---CCceEEEEEC
Confidence            456666666543        78899998832     222221111110  1223322 565555531   2345778998


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--------------cEEEEECCCCceEEcccccccccceeEEE
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--------------RLSKYDADHDWWDEVIELAELKGAEKITA  339 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--------------~v~~yd~~~~~W~~i~~~p~~r~~~~~~~  339 (390)
                      .+.+-...-.   .......++...++..+++++.++              .+..||..+.+  .+..+...........
T Consensus       248 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~  322 (369)
T 3zwl_B          248 STLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE--EIGRVQGHFGPLNTVA  322 (369)
T ss_dssp             TTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC--EEEEEECCSSCEEEEE
T ss_pred             CCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc--chhheecccCcEEEEE
Confidence            8765433211   111112222235666666666554              67788876653  2222222223333333


Q ss_pred             E--CCEEEEEeeCCceEEEEEcCCC
Q 016368          340 A--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       340 ~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +  ++++++.++.+..|.+||+.+.
T Consensus       323 ~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          323 ISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ECCCCCEEEEEcCCCeEEEEECccc
Confidence            3  6777777777889999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.86  E-value=0.62  Score=41.55  Aligned_cols=179  Identities=8%  Similarity=-0.021  Sum_probs=92.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-C---CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-G---GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||..+++............-.+++.. +   +.+++.|+.+.        .+.+||..+....  -..+..-...
T Consensus        44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~--~~~~~~~~~~  113 (357)
T 3i2n_A           44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG--------NLHIWNLEAPEMP--VYSVKGHKEI  113 (357)
T ss_dssp             EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS--------CEEEECTTSCSSC--SEEECCCSSC
T ss_pred             cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC--------eEEEEeCCCCCcc--EEEEEecccc
Confidence            4688999888766443222111111222222 2   47777776654        6788888765400  2222211111


Q ss_pred             CccccceEEEE-------ECCEEEEEcccCCCCceeEEEeCCCCC--eEecCCCCCC-CCCCceEE----EeeCCeEEEE
Q 016368          240 RFSREAVEAVG-------FKGNLCMVNLKGNGAKDGAIYNVELDK--WKEMPEGMHA-GWNGPAAS----TMNEEELYVV  305 (390)
Q Consensus       240 ~~~r~~~~~~~-------~~g~lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~~~~-~~~~~~~~----~~~~g~lyv~  305 (390)
                           -.++..       -++...+.|+   ....+.+||+.+..  ...+...... ......++    ...++.+++.
T Consensus       114 -----v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          114 -----INAIDGIGGLGIGEGAPEIVTGS---RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             -----EEEEEEESGGGCC-CCCEEEEEE---TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             -----eEEEeeccccccCCCccEEEEEe---CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence                 122211       2455555532   23457789988764  3333321111 11111121    1147888888


Q ss_pred             eCCCCcEEEEECCCCceEEcccccccccceeEEEE----CCEEEEEeeCCceEEEEEcCCC
Q 016368          306 NEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA----RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       306 gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~----~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.++.+..||..+..-.....  .......+...    ++..++.|..+..+.+||+.+.
T Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          186 GYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             EccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            9888999999998765432221  11222233333    5677777777778999987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.84  E-value=0.15  Score=46.29  Aligned_cols=152  Identities=12%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++++++.||.+.        .+.+||..++.    |.....+...... .-.+++. -++++.+.|+   ....+.++|.
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~----~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s---~D~~v~iw~~   90 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDS----WICKSVLSEGHQR-TVRKVAWSPCGNYLASAS---FDATTCIWKK   90 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTE----EEEEEEECSSCSS-CEEEEEECTTSSEEEEEE---TTSCEEEEEE
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCc----ceeeeeeccccCC-cEEEEEECCCCCEEEEEE---CCCcEEEEEc
Confidence            566777777654        67888988887    7533222111100 0122222 2566666542   2344668888


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC-ceEEcccccccccceeEEEE--CCEEEEEeeC
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD-WWDEVIELAELKGAEKITAA--RGRVCAVCEN  350 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~-~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~  350 (390)
                      .++.+..+...........+++...++++++.|+.++.+..||..+. .+..+..+.........+.+  ++.+++.|+.
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence            77766544331111111122332347888999999999999998764 34434333333332333332  5667777777


Q ss_pred             CceEEEEEcCCC
Q 016368          351 GERIMVVDVLAS  362 (390)
Q Consensus       351 ~~~v~~~d~~~~  362 (390)
                      +..+.+||..+.
T Consensus       171 d~~i~~w~~~~~  182 (345)
T 3fm0_A          171 DDTVKLYREEED  182 (345)
T ss_dssp             TSCEEEEEEETT
T ss_pred             CCcEEEEEecCC
Confidence            778888887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.84  E-value=0.5  Score=42.19  Aligned_cols=179  Identities=9%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             CCcEEEeCCCCceecCCCCCC------------------CCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSI------------------PRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~------------------~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ..+++||+.+++++.......                  ...-++++..  ++.|||....         ..+.+||+.+
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~---------~~i~~~d~~~  110 (322)
T 2fp8_A           40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY---------YHLSVVGSEG  110 (322)
T ss_dssp             SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT---------TEEEEECTTC
T ss_pred             CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC---------CCEEEEeCCC
Confidence            578899998876654321000                  0112345555  5789987422         2478899887


Q ss_pred             CccccccEEcccCCCC-CccccceEEEEE--CCEEEEEcccC--------------CCCceeEEEeCCCCCeEecCCCCC
Q 016368          224 DREDWKWEKKAQLKDG-RFSREAVEAVGF--KGNLCMVNLKG--------------NGAKDGAIYNVELDKWKEMPEGMH  286 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~-~~~r~~~~~~~~--~g~lyv~gg~g--------------~~~~~~~~yd~~~~~W~~~~~~~~  286 (390)
                      +.    .+.+...... ... ....+++.  +|.+|+.....              .....+.+||+.+.+.+.+.....
T Consensus       111 g~----~~~~~~~~~~~~~~-~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~  185 (322)
T 2fp8_A          111 GH----ATQLATSVDGVPFK-WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH  185 (322)
T ss_dssp             EE----CEEEESEETTEECS-CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES
T ss_pred             CE----EEEecccCCCCccc-ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc
Confidence            76    5554332111 010 01334443  67899873110              011346689988776654432111


Q ss_pred             CCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCC---ceEEcccccccccceeEEEE-CCEEEEEeeC----------C
Q 016368          287 AGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHD---WWDEVIELAELKGAEKITAA-RGRVCAVCEN----------G  351 (390)
Q Consensus       287 ~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~---~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~----------~  351 (390)
                         ....++...+| .||+.....+.|++||..+.   ..+.+..++.   ..+++.- +|.|||....          .
T Consensus       186 ---~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~  259 (322)
T 2fp8_A          186 ---VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNADGHFWVSSSEELDGNMHGRVD  259 (322)
T ss_dssp             ---CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred             ---cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---CCCeEECCCCCEEEEecCcccccccCCCc
Confidence               11234432455 48888776779999998753   3444333322   3344443 6788887533          3


Q ss_pred             ceEEEEEcCCC
Q 016368          352 ERIMVVDVLAS  362 (390)
Q Consensus       352 ~~v~~~d~~~~  362 (390)
                      ..|+.+|....
T Consensus       260 ~~v~~~d~~G~  270 (322)
T 2fp8_A          260 PKGIKFDEFGN  270 (322)
T ss_dssp             EEEEEECTTSC
T ss_pred             cEEEEECCCCC
Confidence            46788886543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.80  E-value=0.0036  Score=61.79  Aligned_cols=33  Identities=18%  Similarity=0.437  Sum_probs=25.7

Q ss_pred             CCCCCCcHHHHHHHHhcCC----chhhHhhhHhHHHh
Q 016368           32 LLLPGLPNHLADRCLSSLP----PALLFSVCHSWRRL   64 (390)
Q Consensus        32 ~~~~~LP~dl~~~iL~rLP----l~~~r~Vck~W~~l   64 (390)
                      ..|..||+|++.+||++||    +.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            5678899999999999999    77888999999988

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.78  E-value=0.71  Score=49.51  Aligned_cols=177  Identities=8%  Similarity=-0.004  Sum_probs=92.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC---
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD---  238 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~---  238 (390)
                      ..+.+||..+++....-.  ...... +++.. ++..++.|+.++        .+.+||..+..    -........   
T Consensus       723 ~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg--------~v~vwd~~~~~----~~~~~~~~~~~~  788 (1249)
T 3sfz_A          723 FFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADG--------TLRLWDVRSAN----ERKSINVKRFFL  788 (1249)
T ss_dssp             SCEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEEEESSS--------EEEEEEGGGTE----EEEEEECCCCC-
T ss_pred             CeEEEEECCCcchhheec--CCCCCEEEEEEecCCCEEEEEECCC--------eEEEEeCCCCc----ccceeccccccc
Confidence            468899988775432111  111111 12222 566666666654        68888887765    221111000   


Q ss_pred             -------CCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCc
Q 016368          239 -------GRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       239 -------~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                             .........+..-+|+..+++    ......+||..+........ .........+....++.+++.++.++.
T Consensus       789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~  863 (1249)
T 3sfz_A          789 SSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQYC  863 (1249)
T ss_dssp             -------CCCCCBCCCCBCTTSSEEEEE----ETTEEEEEETTTCCEEEEEE-CSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred             ccCCccccccceEEEEEECCCCCEEEEE----cCCcEEEEEecCCCceeEEc-CCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence                   000000011112355555554    23457788888776543322 111222223333368899999999999


Q ss_pred             EEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          312 LSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +..||..+..  .+..+....... ++... +|..++.++.+..+.+||+.+
T Consensus       864 v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          864 VELWNIDSRL--KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEEEEcCCCc--eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            9999988653  333333222222 23333 666777767777899998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.77  E-value=1.1  Score=40.85  Aligned_cols=137  Identities=9%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             eEEEEECCCCccccccEEcc--cCCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCC
Q 016368          215 SMKKWDLKSDREDWKWEKKA--QLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG  288 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~--~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~  288 (390)
                      .+.+||..++.    -...-  ..+..... ...+.+.  .++.+++.|+   ....+.+||+...  .-..+..   ..
T Consensus       181 ~i~~wd~~~~~----~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sgs---~D~~v~~wd~~~~~~~~~~~~~---h~  249 (380)
T 3iz6_a          181 TCVLWDVTTGQ----RISIFGSEFPSGHTA-DVLSLSINSLNANMFISGS---CDTTVRLWDLRITSRAVRTYHG---HE  249 (380)
T ss_dssp             CEEEECTTTCC----EEEEECCCSSSSCCS-CEEEEEECSSSCCEEEEEE---TTSCEEEEETTTTCCCCEEECC---CS
T ss_pred             cEEEEEcCCCc----EEEEeecccCCCCcc-CeEEEEeecCCCCEEEEEE---CCCeEEEEECCCCCcceEEECC---cC
Confidence            68889998876    33221  11111110 0122222  2566777642   2345678998632  2222211   11


Q ss_pred             CCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccc------cceeEEE-ECCEEEEEeeCCceEEEEEcCC
Q 016368          289 WNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELK------GAEKITA-ARGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       289 ~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r------~~~~~~~-~~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..-.+++...++..++.|+.++.+..||..+..-...-.....+      ...+++. .+|++++.|..+..+.+||+..
T Consensus       250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred             CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence            11223333357889999999999999999876543322111111      1122333 3778888877788999999865


Q ss_pred             C
Q 016368          362 S  362 (390)
Q Consensus       362 ~  362 (390)
                      .
T Consensus       330 ~  330 (380)
T 3iz6_a          330 A  330 (380)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.074  Score=54.15  Aligned_cols=151  Identities=9%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-C--CEEEEEcccCCCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~y  271 (390)
                      +++.++.|+.++        .+.+||..++.    +..+..+......  -.+++.. +  +...+.|+   ....+.+|
T Consensus        20 dg~~latg~~dg--------~I~vwd~~~~~----~~~~~~l~~h~~~--V~~l~~s~~~~~~~l~s~s---~Dg~I~vw   82 (753)
T 3jro_A           20 YGKRLATCSSDK--------TIKIFEVEGET----HKLIDTLTGHEGP--VWRVDWAHPKFGTILASCS---YDGKVLIW   82 (753)
T ss_dssp             SSCCEEEEETTT--------EEEEEEEETTE----EEEEEEECCCSSC--EEEEEECCTTSCSEEEEEE---TTSCEEEE
T ss_pred             CCCeEEEEECCC--------cEEEEecCCCC----CccceeccCCcCc--eEEEEecCCCCCCEEEEEe---CCCeEEEE
Confidence            455666666554        78889988777    7666554322210  1233332 2  55555542   23457789


Q ss_pred             eCCCCCeEecCCCCCCCCCCceEEEeeC--CeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE---------
Q 016368          272 NVELDKWKEMPEGMHAGWNGPAASTMNE--EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA---------  340 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~--g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---------  340 (390)
                      |..+++|..+...........++....+  +.+++.|+.++.+..||..+..-.....+...........+         
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            9988887665541112222223332234  78899999999999999987632222222222222222222         


Q ss_pred             ------CCEEEEEeeCCceEEEEEcCCC
Q 016368          341 ------RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 ------~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                            ++.+++.|+.++.|.+||+.+.
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCC
Confidence                  3667777777788999998765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.75  E-value=0.87  Score=39.30  Aligned_cols=146  Identities=11%  Similarity=0.021  Sum_probs=84.7

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      +++||+.-..        ...+.+||+.+..    -+.+...... .   ..++++.  ++.+|+..   .+...+.++|
T Consensus        47 ~~~ly~~d~~--------~~~I~~~~~~g~~----~~~~~~~~~~-~---p~~ia~d~~~~~lyv~d---~~~~~I~~~~  107 (267)
T 1npe_A           47 DKVVYWTDIS--------EPSIGRASLHGGE----PTTIIRQDLG-S---PEGIALDHLGRTIFWTD---SQLDRIEVAK  107 (267)
T ss_dssp             TTEEEEEETT--------TTEEEEEESSSCC----CEEEECTTCC-C---EEEEEEETTTTEEEEEE---TTTTEEEEEE
T ss_pred             CCEEEEEECC--------CCEEEEEecCCCC----cEEEEECCCC-C---ccEEEEEecCCeEEEEE---CCCCEEEEEE
Confidence            5789987532        3478999998765    3333221111 1   2445543  57999983   2345678898


Q ss_pred             CCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCC--CCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEE
Q 016368          273 VELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEG--KGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAV  347 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~--~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~  347 (390)
                      +....-+.+.. .... .-..+++.. ++.||+....  .+.++++++....-+.+... ......+++.-  +++||+.
T Consensus       108 ~~g~~~~~~~~-~~~~-~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~-~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          108 MDGTQRRVLFD-TGLV-NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-NLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             TTSCSCEEEEC-SSCS-SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-TCSCEEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEE-CCCC-CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC-CCCCCcEEEEcCCCCEEEEE
Confidence            87554333322 1111 112333313 6899998865  46899999876443333221 12234455554  5789998


Q ss_pred             eeCCceEEEEEcCCC
Q 016368          348 CENGERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~~~v~~~d~~~~  362 (390)
                      -...+.|.++|+.+.
T Consensus       185 d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          185 DAGTHRAECLNPAQP  199 (267)
T ss_dssp             ETTTTEEEEEETTEE
T ss_pred             ECCCCEEEEEecCCC
Confidence            666778999988653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.71  E-value=0.89  Score=44.13  Aligned_cols=144  Identities=10%  Similarity=-0.023  Sum_probs=79.4

Q ss_pred             CEEEEEecc-CCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEe
Q 016368          196 GVVYVASGV-GAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       196 ~~lyv~GG~-~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      ++.++.|+. +.        .+.+||..+..    ... ..+.....   ....+.+  ++++.+.|+.   ...+.+||
T Consensus       456 ~~~l~~~~~~d~--------~i~~~~~~~~~----~~~-~~~~~~~~---~v~~~~~s~~g~~l~~~~~---dg~i~iw~  516 (615)
T 1pgu_A          456 QNYVAVGLEEGN--------TIQVFKLSDLE----VSF-DLKTPLRA---KPSYISISPSETYIAAGDV---MGKILLYD  516 (615)
T ss_dssp             SSEEEEEETTTS--------CEEEEETTEEE----EEE-ECSSCCSS---CEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             CCEEEEeecCCC--------eEEEEECCCcc----ccc-cccCCccC---ceEEEEECCCCCEEEEcCC---CCeEEEee
Confidence            556666655 43        68899998876    532 22211111   1222333  6777776422   34577899


Q ss_pred             CCCCCeEecCCCCCCCCCCceEEEee----------CCeEEEEeCCCCcEEEEECCCCceEEcccccccccce-eEEE-E
Q 016368          273 VELDKWKEMPEGMHAGWNGPAASTMN----------EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAE-KITA-A  340 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~~~~~~~----------~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~-~  340 (390)
                      ..+.+-...-. .........++...          ++++++.++.++.+..||..+.. ..+..+....... ++.. .
T Consensus       517 ~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          517 LQSREVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             TTTTEEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEE
T ss_pred             CCCCcceeEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcC
Confidence            88764332211 00111112222223          78999999999999999998752 2222222222222 2332 3


Q ss_pred             CCEEEEEeeCCceEEEEEcCC
Q 016368          341 RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       341 ~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +++ .+.++.++.+.+||+..
T Consensus       595 ~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          595 PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TTE-EEEEETTSCEEEEEEC-
T ss_pred             CCC-eEEecCCceEEEEeeec
Confidence            778 66667777899998864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.68  E-value=1.1  Score=40.11  Aligned_cols=170  Identities=8%  Similarity=0.071  Sum_probs=84.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE--EcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE--KKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~--~~~~~~~~~  240 (390)
                      ..+.+||..+++-...........-.+++.. ++.+++.|+.+.        .+.+||..+..    -.  .+..-....
T Consensus       149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg--------~i~iwd~~~~~----~~~~~~~~~h~~~  216 (343)
T 3lrv_A          149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG--------ILDVYNLSSPD----QASSRFPVDEEAK  216 (343)
T ss_dssp             CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS--------CEEEEESSCTT----SCCEECCCCTTSC
T ss_pred             CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCC----CCccEEeccCCCC
Confidence            4688999988765332211111112223333 677777777654        78999998876    32  222101111


Q ss_pred             ccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeE-ecCCCCCC--CCCC-ceEEEeeCCeEEEEeCC-CCcEEE
Q 016368          241 FSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEGMHA--GWNG-PAASTMNEEELYVVNEG-KGRLSK  314 (390)
Q Consensus       241 ~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~~~~--~~~~-~~~~~~~~g~lyv~gg~-~~~v~~  314 (390)
                          -.+++.. ++...+.|+    ...+.+||+.+.+-. .+.. ...  .... .+++...+|+.++.++. ++.+.+
T Consensus       217 ----v~~l~fs~~g~~l~s~~----~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          217 ----IKEVKFADNGYWMVVEC----DQTVVCFDLRKDVGTLAYPT-YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI  287 (343)
T ss_dssp             ----EEEEEECTTSSEEEEEE----SSBEEEEETTSSTTCBSSCC-CBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ----EEEEEEeCCCCEEEEEe----CCeEEEEEcCCCCcceeecc-cccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence                1233332 566666642    226789999875421 1111 100  1111 12333346777777655 666666


Q ss_pred             EEC--CCCceEE----cccccc---cccceeEEEECCEEEEEeeCCceE
Q 016368          315 YDA--DHDWWDE----VIELAE---LKGAEKITAARGRVCAVCENGERI  354 (390)
Q Consensus       315 yd~--~~~~W~~----i~~~p~---~r~~~~~~~~~g~l~i~g~~~~~v  354 (390)
                      |+.  ....|..    ......   ......++..++.+.++-..++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  336 (343)
T 3lrv_A          288 YKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSF  336 (343)
T ss_dssp             EEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECSSEE
T ss_pred             EEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecCCeE
Confidence            655  5667987    222222   111223344467777664444433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.67  E-value=0.69  Score=42.22  Aligned_cols=194  Identities=9%  Similarity=-0.070  Sum_probs=100.2

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      ++.+++++++.     .-..+.+||+.+.+-.........  -.+++.. ++++++.++.+         .+.+++..++
T Consensus       144 Dg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~~---------~~~~~~~~~~  207 (365)
T 4h5i_A          144 EGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITGS---------SLEVISTVTG  207 (365)
T ss_dssp             TSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECSS---------CEEEEETTTC
T ss_pred             CCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccce---------eEEEEEeccC
Confidence            45566555442     224688899988765432221111  1222222 56666655422         4567777776


Q ss_pred             ccccccEEcccCCCCCccccceEEEEECCEEEEEcccCC-CCceeEEEeCCCCCeEecCCCCCCCCC--CceEEEeeCCe
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN-GAKDGAIYNVELDKWKEMPEGMHAGWN--GPAASTMNEEE  301 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~-~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~g~  301 (390)
                      .    -............ .......-+++.++.+.... .......+|..................  ..+++...+|+
T Consensus       208 ~----~~~~~~~~~~~~~-v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          208 S----CIARKTDFDKNWS-LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE  282 (365)
T ss_dssp             C----EEEEECCCCTTEE-EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred             c----ceeeeecCCCCCC-EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence            5    3322211111110 01112234777777643211 112344566655544332210111111  12233336899


Q ss_pred             EEEEeCCCCcEEEEECCCCceEEcccc-cccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          302 LYVVNEGKGRLSKYDADHDWWDEVIEL-AELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       302 lyv~gg~~~~v~~yd~~~~~W~~i~~~-p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++.|+.++.|..||..+.+  .+..+ .........+.+  +|+.++-|+.++.|-+||+..+
T Consensus       283 ~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999998754  33322 222233333333  7888888788889999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.67  E-value=0.8  Score=41.68  Aligned_cols=137  Identities=7%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV----GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+||..+++-...-....+.  .+....    ++.+++.|+.+.        .+.+||..+..    -...-.....
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~v~~~d~~~~~----~~~~~~~~~~  187 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRGP--------KVQLCDLKSGS----CSHILQGHRQ  187 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESSS--------SEEEEESSSSC----CCEEECCCCS
T ss_pred             CeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCCC--------eEEEEeCCCcc----eeeeecCCCC
Confidence            46888998877544332222211  122222    344666666553        68899998765    2211111111


Q ss_pred             CccccceEEEEE-CCE-EEEEcccCCCCceeEEEeCCCCC--eEecCCC----------CCCCCCC--ceEEEeeCCeEE
Q 016368          240 RFSREAVEAVGF-KGN-LCMVNLKGNGAKDGAIYNVELDK--WKEMPEG----------MHAGWNG--PAASTMNEEELY  303 (390)
Q Consensus       240 ~~~r~~~~~~~~-~g~-lyv~gg~g~~~~~~~~yd~~~~~--W~~~~~~----------~~~~~~~--~~~~~~~~g~ly  303 (390)
                      .    ..+++.. ++. +++.|+   ....+.+||..+..  ...+...          .......  ..++...++..+
T Consensus       188 ~----v~~~~~~~~~~~ll~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          188 E----ILAVSWSPRYDYILATAS---ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             C----EEEEEECSSCTTEEEEEE---TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             c----EEEEEECCCCCcEEEEEc---CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            1    1223332 333 555532   22346788886542  2221100          0011111  122222477788


Q ss_pred             EEeCCCCcEEEEECCCCc
Q 016368          304 VVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~  321 (390)
                      +.++.++.+..||..+..
T Consensus       261 ~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             EEEETTSCEEEEETTTCC
T ss_pred             EEecCCCeEEEEECCCCc
Confidence            888888888999887643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.66  E-value=1.1  Score=39.97  Aligned_cols=173  Identities=13%  Similarity=0.050  Sum_probs=97.8

Q ss_pred             CCcEEEeCCCCceecC-CCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC----CccccccEEcccC
Q 016368          164 ASPLAFNPQSNTWFFG-PQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS----DREDWKWEKKAQL  236 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~-~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~~~~~W~~~~~~  236 (390)
                      +.+.++|+.+.+...+ +.+   ..-.+.+..  +++||+.-..        ...+.++++.+    ..    -+.+...
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~~----~~~~~~~   74 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS----YDTVISR   74 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSC---SSEEEEEEETTTTEEEEEETT--------TTEEEEEEC------------CEEEECS
T ss_pred             CeEEEEECCCcceEehhcCC---CceEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCcc----cEEEEeC
Confidence            4677778777665443 222   222344444  5789998433        34788999876    22    2322211


Q ss_pred             CCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEEe-eCCeEEEEeCCC-Cc
Q 016368          237 KDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAASTM-NEEELYVVNEGK-GR  311 (390)
Q Consensus       237 ~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~-~~g~lyv~gg~~-~~  311 (390)
                      ....    ..+.++  .++++|+.   ......+.++|+....-+.+.. ....+   ..+++. .+|.||+..... +.
T Consensus        75 ~~~~----p~glavd~~~~~ly~~---d~~~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~~~~  144 (316)
T 1ijq_A           75 DIQA----PDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGTPAK  144 (316)
T ss_dssp             SCSC----CCEEEEETTTTEEEEE---ETTTTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSSSCE
T ss_pred             CCCC----cCEEEEeecCCeEEEE---ECCCCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCCCCe
Confidence            1111    134444  47899998   2245668889987654333221 11111   233431 378999988544 68


Q ss_pred             EEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          312 LSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |+++++....=+.+... ......++++-  +++||+.-.....|.++|....
T Consensus       145 I~~~~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          145 IKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEcCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            99999876544333221 22334566665  7899998555678999998754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.66  E-value=0.24  Score=48.31  Aligned_cols=176  Identities=14%  Similarity=-0.012  Sum_probs=90.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEEC--CCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDL--KSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~--~t~~~~~~W~~~~~~~~~  239 (390)
                      +.+.++|..+++-...-+.  ...-|.++.. ++ .||+.+. +        ..+.+||+  .+.+      .+..++..
T Consensus       159 ~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~~-d--------~~V~v~D~~~~t~~------~~~~i~~g  221 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGR-D--------ARIDMIDLWAKEPT------KVAEIKIG  221 (543)
T ss_dssp             TEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEET-T--------SEEEEEETTSSSCE------EEEEEECC
T ss_pred             CeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEECC-C--------CeEEEEECcCCCCc------EEEEEecC
Confidence            5788999988865322111  1113444333 44 5666642 1        47999999  5554      33333322


Q ss_pred             CccccceEEEEE-----CCE-EEEEcccCCCCceeEEEeCCCCCeEe-cCCC-CCC------CC-CCceEEEee-CCeEE
Q 016368          240 RFSREAVEAVGF-----KGN-LCMVNLKGNGAKDGAIYNVELDKWKE-MPEG-MHA------GW-NGPAASTMN-EEELY  303 (390)
Q Consensus       240 ~~~r~~~~~~~~-----~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~-~~~------~~-~~~~~~~~~-~g~ly  303 (390)
                      ..   ...+++.     +|+ +|+.+   .....+.++|..+.+-.. ++.. +..      +. ...+++... ++.+|
T Consensus       222 ~~---p~~va~sp~~~~dg~~l~v~~---~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          222 IE---ARSVESSKFKGYEDRYTIAGA---YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             SE---EEEEEECCSTTCTTTEEEEEE---EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             CC---cceEEeCCCcCCCCCEEEEEE---ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            22   1334443     565 55541   124557789987764322 2210 100      11 111222213 45666


Q ss_pred             EEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceEEEEEcCCC
Q 016368          304 VVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      +....++.++.+|..+..-..+..++..+..+.+... +|+ +|+.+...+.|.++|+.+.
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence            6666778999999987543222233333333444443 455 5555444668888998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.63  E-value=1.5  Score=41.11  Aligned_cols=168  Identities=6%  Similarity=-0.136  Sum_probs=84.0

Q ss_pred             CCcEEEeCCCCceec--CCCCCCCCcc-eEEEE-EC---CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368          164 ASPLAFNPQSNTWFF--GPQLSIPRRW-CAMGS-VG---GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL  236 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~--~~~~~~~r~~-~~~~~-~~---~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~  236 (390)
                      ..+++|+..+.+...  +..+...... .+++. -+   +++++.|+.+.        .+.+||..+..    -...-..
T Consensus       171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~--------~i~vwd~~~~~----~~~~~~~  238 (450)
T 2vdu_B          171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE--------HIKISHYPQCF----IVDKWLF  238 (450)
T ss_dssp             SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS--------CEEEEEESCTT----CEEEECC
T ss_pred             CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC--------cEEEEECCCCc----eeeeeec
Confidence            467888877665432  1112111111 22222 25   77777777653        78889988776    3322111


Q ss_pred             CCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCC------C-----------------CCCCCCce
Q 016368          237 KDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG------M-----------------HAGWNGPA  293 (390)
Q Consensus       237 ~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~------~-----------------~~~~~~~~  293 (390)
                      .....   ..+++..++++++.|+   ....+.+||..+.+-...-..      .                 ........
T Consensus       239 ~h~~~---v~~~~~sd~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          239 GHKHF---VSSICCGKDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             CCSSC---EEEEEECSTTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             CCCCc---eEEEEECCCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            11111   1222222676666642   234577899887753221100      0                 00111112


Q ss_pred             EEEeeCCeEEEEeC-CCCcEEEEEC--C-CCceEEcccccccccceeEEEECCEEEEEee
Q 016368          294 ASTMNEEELYVVNE-GKGRLSKYDA--D-HDWWDEVIELAELKGAEKITAARGRVCAVCE  349 (390)
Q Consensus       294 ~~~~~~g~lyv~gg-~~~~v~~yd~--~-~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~  349 (390)
                      ++...++..+++++ .++.+.+||.  . ...+..+..++.......++...+.+++...
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~  372 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLD  372 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEe
Confidence            22223455555555 6788999988  3 3456666655544333455666677777643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.62  E-value=0.23  Score=43.81  Aligned_cols=150  Identities=12%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC---CCCCccccceEEEE-EC-CEEEEEcccCCCCceeE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL---KDGRFSREAVEAVG-FK-GNLCMVNLKGNGAKDGA  269 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~---~~~~~~r~~~~~~~-~~-g~lyv~gg~g~~~~~~~  269 (390)
                      ++.||+.+..... .......+.+||+.++.    ++.+...   .....   ..+++. -+ |++|+..    ....+.
T Consensus        28 ~g~l~~~~~~~~~-~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~---~~~i~~~~~~g~l~v~~----~~~~l~   95 (314)
T 1pjx_A           28 NGDFYIVAPEVEV-NGKPAGEILRIDLKTGK----KTVICKPEVNGYGGI---PAGCQCDRDANQLFVAD----MRLGLL   95 (314)
T ss_dssp             TSCEEEEETTCEE-TTEECCEEEEECTTTCC----EEEEECCEETTEECC---EEEEEECSSSSEEEEEE----TTTEEE
T ss_pred             CCCEEEEEecccc-CCCCCCEEEEEeCCCCc----EEEEEecccCCCCCC---CceEEEecCCCcEEEEE----CCCCEE
Confidence            5778887211000 00122478999998888    7655320   00011   133443 25 7899884    233678


Q ss_pred             EEeCCCCCeEec-CCCCCC--CCCCceEEEeeCCeEEEEeCCC---------------CcEEEEECCCCceEEccccccc
Q 016368          270 IYNVELDKWKEM-PEGMHA--GWNGPAASTMNEEELYVVNEGK---------------GRLSKYDADHDWWDEVIELAEL  331 (390)
Q Consensus       270 ~yd~~~~~W~~~-~~~~~~--~~~~~~~~~~~~g~lyv~gg~~---------------~~v~~yd~~~~~W~~i~~~p~~  331 (390)
                      +||++ ++...+ ......  ......++...+|++|+.....               +.+++||+. .+...+..  ..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~  171 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AF  171 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EE
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CC
Confidence            89998 777655 321111  1112334433578999877543               579999987 55554321  11


Q ss_pred             ccceeEEEE-----CC-EEEEEeeCCceEEEEEcC
Q 016368          332 KGAEKITAA-----RG-RVCAVCENGERIMVVDVL  360 (390)
Q Consensus       332 r~~~~~~~~-----~g-~l~i~g~~~~~v~~~d~~  360 (390)
                      ....+++..     ++ .||+.....+.+++||+.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            122334433     33 477765556688888865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.61  E-value=0.23  Score=46.59  Aligned_cols=188  Identities=6%  Similarity=-0.085  Sum_probs=95.8

Q ss_pred             eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCC-CCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCC
Q 016368          148 NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLS-IPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSD  224 (390)
Q Consensus       148 ~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~  224 (390)
                      .+++.|+..       ..|.+||..+++-..+-.+. ....-.+++..  ++.+++.|+.+.        .+.+||.+++
T Consensus       133 ~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~~~  197 (435)
T 4e54_B          133 STVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFKGN  197 (435)
T ss_dssp             TCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS--------CEEEEETTSC
T ss_pred             CEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeeccCC
Confidence            455555432       46888998776543322211 11111233332  456666776654        6788999887


Q ss_pred             ccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeC-CeE
Q 016368          225 REDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNE-EEL  302 (390)
Q Consensus       225 ~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-g~l  302 (390)
                      .    -+.+.........  ..++.. -++++++.|+   ....+.++|...+.-..+..   ......+++...+ ..+
T Consensus       198 ~----~~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~---~dg~i~~wd~~~~~~~~~~~---h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          198 I----LRVFASSDTINIW--FCSLDVSASSRMVVTGD---NVGNVILLNMDGKELWNLRM---HKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             E----EEEEECCSSCSCC--CCCEEEETTTTEEEEEC---SSSBEEEEESSSCBCCCSBC---CSSCEEEEEECTTCSSE
T ss_pred             c----eeEEeccCCCCcc--EEEEEECCCCCEEEEEe---CCCcEeeeccCcceeEEEec---ccceEEeeeecCCCceE
Confidence            6    5444332211110  122222 3667777642   23456788886543211111   1111112222113 457


Q ss_pred             EEEeCCCCcEEEEECCCCceEE-cccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          303 YVVNEGKGRLSKYDADHDWWDE-VIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       303 yv~gg~~~~v~~yd~~~~~W~~-i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.|+.++.+..||..+..-.. +............+.+  +|..++.|+.++.|.+||+.+.
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            7788888999999987644221 1111112222222222  5666777777788999998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.56  E-value=0.21  Score=46.79  Aligned_cols=147  Identities=8%  Similarity=-0.026  Sum_probs=84.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC-CCCCccccceEEEEE--CCEEEEEcccCCCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL-KDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~-~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~y  271 (390)
                      ++.+++.|+.++        .+.+||..+..    -..+..+ .....   -.+++..  ++.+++.|+   ....+.++
T Consensus       131 ~~~~lasGs~dg--------~i~lWd~~~~~----~~~~~~~~gH~~~---V~~l~f~p~~~~~l~s~s---~D~~v~iw  192 (435)
T 4e54_B          131 HPSTVAVGSKGG--------DIMLWNFGIKD----KPTFIKGIGAGGS---ITGLKFNPLNTNQFYASS---MEGTTRLQ  192 (435)
T ss_dssp             CTTCEEEEETTS--------CEEEECSSCCS----CCEEECCCSSSCC---CCEEEECSSCTTEEEEEC---SSSCEEEE
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCC----ceeEEEccCCCCC---EEEEEEeCCCCCEEEEEe---CCCEEEEe
Confidence            456777777665        68889988776    3333222 21111   1334432  455555531   23457789


Q ss_pred             eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE---CCEEEEEe
Q 016368          272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA---RGRVCAVC  348 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g  348 (390)
                      |.+++........-.......++....++.+++.|+.++.+..||..+..   +..+.........+.+   +..+++.|
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEe
Confidence            99887665543311122222233333688999999999999999987543   3333333333333333   34467777


Q ss_pred             eCCceEEEEEcCCC
Q 016368          349 ENGERIMVVDVLAS  362 (390)
Q Consensus       349 ~~~~~v~~~d~~~~  362 (390)
                      +.+..|.+||+.+.
T Consensus       270 s~d~~v~iwd~~~~  283 (435)
T 4e54_B          270 SVDQTVKIWDLRQV  283 (435)
T ss_dssp             ETTSBCCEEETTTC
T ss_pred             cCcceeeEEecccc
Confidence            77788999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.56  E-value=0.21  Score=44.81  Aligned_cols=178  Identities=10%  Similarity=0.033  Sum_probs=89.1

Q ss_pred             CCcEEEeCCCCc--eecCCCCCC--CCcceEEEE-----ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc
Q 016368          164 ASPLAFNPQSNT--WFFGPQLSI--PRRWCAMGS-----VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA  234 (390)
Q Consensus       164 ~~~~~~dp~t~~--W~~~~~~~~--~r~~~~~~~-----~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~  234 (390)
                      ..+.+||..+.+  ...+.....  .+.-.+.+.     -++.+++.|+.+.        .+.+||..+..    -....
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~----~~~~~  206 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG--------DIKLFDLRNMA----LRWET  206 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS--------EEEEEETTTTE----EEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC--------eEEEEECccCc----eeeec
Confidence            468889988764  222222211  112222221     3566777766543        78899998876    32222


Q ss_pred             cCCCCCccccceEEEEE----CCEEEEEcccCCCCceeEEEeCCCCC----eEecCCCCCCCCCCceEEEeeCCe-EEEE
Q 016368          235 QLKDGRFSREAVEAVGF----KGNLCMVNLKGNGAKDGAIYNVELDK----WKEMPEGMHAGWNGPAASTMNEEE-LYVV  305 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~~----~g~lyv~gg~g~~~~~~~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~g~-lyv~  305 (390)
                      .....     ..+++..    ++..++.|+   ....+.+||..+.+    +..... .........+....++. +++.
T Consensus       207 ~~~~~-----v~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~  277 (357)
T 3i2n_A          207 NIKNG-----VCSLEFDRKDISMNKLVATS---LEGKFHVFDMRTQHPTKGFASVSE-KAHKSTVWQVRHLPQNRELFLT  277 (357)
T ss_dssp             ECSSC-----EEEEEESCSSSSCCEEEEEE---STTEEEEEEEEEEETTTEEEEEEE-ECCSSCEEEEEEETTEEEEEEE
T ss_pred             CCCCc-----eEEEEcCCCCCCCCEEEEEC---CCCeEEEEeCcCCCcccceeeecc-CCCcCCEEEEEECCCCCcEEEE
Confidence            22111     1333333    455555532   23346677775431    110000 01111112233224566 7888


Q ss_pred             eCCCCcEEEEECCCCc-----------------eEEcccccccccceeEEEE--CCEEEE-EeeCCceEEEEEcCCC
Q 016368          306 NEGKGRLSKYDADHDW-----------------WDEVIELAELKGAEKITAA--RGRVCA-VCENGERIMVVDVLAS  362 (390)
Q Consensus       306 gg~~~~v~~yd~~~~~-----------------W~~i~~~p~~r~~~~~~~~--~g~l~i-~g~~~~~v~~~d~~~~  362 (390)
                      |+.++.+..||..+..                 +..+..+...........+  +++.++ -|+.+..+.+||+.+.
T Consensus       278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            8888988888876432                 2333333333333333333  455554 5677789999998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.51  E-value=0.18  Score=50.84  Aligned_cols=172  Identities=12%  Similarity=0.030  Sum_probs=94.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC----CccccccEEcc--c
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS----DREDWKWEKKA--Q  235 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~~~~~W~~~~--~  235 (390)
                      ..+.++++.+.....+.+..  ..-+++++.  ++.||+.-        .....+.++++.+    ..    -..+.  .
T Consensus       386 ~~I~~id~~~~~~~~~~~~~--~~p~gla~d~~~~~Ly~sD--------~~~~~I~~~~~~g~~~~~~----~~~~i~~~  451 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSD--------LSQRMICSTQLDRAHGVSS----YDTVISRD  451 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCC--TTCCCCEEETTTTEEEECC--------TTTTSBEEEESCCCCC-CC----CCCBCCSC
T ss_pred             cceEEEeCCCCcceeeeccC--cceEEEccccccCeEEEEe--------cCCCeEEEEecCCCCCCcc----eEEEEeCC
Confidence            46777888777666543221  122334443  67899863        2334778888875    11    11111  1


Q ss_pred             CCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEE-eeCCeEEEEeCCC-C
Q 016368          236 LKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAAST-MNEEELYVVNEGK-G  310 (390)
Q Consensus       236 ~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~g~lyv~gg~~-~  310 (390)
                      +..+      .++++  .+++||+.   ......+.++|+....-+.+.. .+..+   ..+++ ..+|.||+..... +
T Consensus       452 ~~~P------~glavD~~~g~LY~t---D~~~~~I~v~d~dg~~~~~l~~~~~~~P---~giavDp~~g~ly~td~~~~~  519 (699)
T 1n7d_A          452 IQAP------DGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFREQGSKP---RAIVVDPVHGFMYWTDWGTPA  519 (699)
T ss_dssp             C--C------CCEECCCSSSBCEEC---CTTTSCEEEEBSSSCCEEEECCCSSCCC---CCEECCSSSSCCEECCCSSSC
T ss_pred             CCCc------ceEEEEeeCCcEEEE---eccCCeEEEEecCCCceEEEEeCCCCCc---ceEEEccCCCcEEEcccCCCC
Confidence            1111      23333  47889998   2334567889987665444432 11111   23332 1368899877433 6


Q ss_pred             cEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .|+++++....-+.+... ......++++-  +++||+.-.....|.++|+...
T Consensus       520 ~I~~~~~dG~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          520 KIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CEEBCCSSSCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             eEEEEeCCCCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            899998875443333211 12233456554  6889988555668899988654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.50  E-value=0.75  Score=45.08  Aligned_cols=121  Identities=13%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             EEEEECCEEEEEeccCCCCCCCccCeEEEEEC-CCCccccccEEcccCCCCCc-----cccceEEEEECCEEEEEcccCC
Q 016368          190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDL-KSDREDWKWEKKAQLKDGRF-----SREAVEAVGFKGNLCMVNLKGN  263 (390)
Q Consensus       190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~-~t~~~~~~W~~~~~~~~~~~-----~r~~~~~~~~~g~lyv~gg~g~  263 (390)
                      +-++.++.||+....        ...+.++|. ++++.  .|+.-........     .....+.++.++++|+..    
T Consensus        57 ~P~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----  122 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF--------PNNTYALNLNDPGKI--VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ----  122 (571)
T ss_dssp             CCEEETTEEEEECST--------TTCEEEEETTCTTSE--EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC----
T ss_pred             ccEEECCEEEEEeCC--------CCEEEEEeCCCCccE--EEEEcCCCCccccccccccccccccEEECCEEEEEe----
Confidence            345679999997642        236889999 77763  4886443221100     000123456799999874    


Q ss_pred             CCceeEEEeCCCC--CeEecCCCCCCC-CCCceEEEeeCCeEEEEeCC-----CCcEEEEECCCCc--eEEc
Q 016368          264 GAKDGAIYNVELD--KWKEMPEGMHAG-WNGPAASTMNEEELYVVNEG-----KGRLSKYDADHDW--WDEV  325 (390)
Q Consensus       264 ~~~~~~~yd~~~~--~W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~-----~~~v~~yd~~~~~--W~~i  325 (390)
                      ......++|.+++  .|+.-....... ....+.++ .+|.+|+....     ++.++.||.++.+  |+.-
T Consensus       123 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          123 ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            3345788998876  588643211111 11222333 68888876542     5789999998754  7653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.49  E-value=1.5  Score=43.54  Aligned_cols=174  Identities=11%  Similarity=0.085  Sum_probs=93.4

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      .++...+..+..-..+-+++.-+.-.++++.  +++||+.--        ....+.++++....    .+.+....... 
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~--------~~~~I~r~~~~g~~----~~~v~~~g~~~-   81 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI--------SLKTISRAFMNGSA----LEHVVEFGLDY-   81 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSCS----CEEEECSSCSC-
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC--------CCCeEEEEECCCCC----cEEEEeCCCCC-
Confidence            3566666665433322222222233344444  689999743        23478889887766    56554332211 


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecC-CCCCCCCCCceEEE-eeCCeEEEEe-CCCCcEEEEE
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMP-EGMHAGWNGPAAST-MNEEELYVVN-EGKGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~-~~~g~lyv~g-g~~~~v~~yd  316 (390)
                         ..++++  .+++||+.   ..+...++++++....=+.+. ..+..+   ..+++ ..+|.||+.. |....|++++
T Consensus        82 ---P~GlAvD~~~~~LY~t---D~~~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~~~~I~r~~  152 (628)
T 4a0p_A           82 ---PEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGGKPKIDRAA  152 (628)
T ss_dssp             ---CCEEEEETTTTEEEEE---ETTTTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ---cceEEEEeCCCEEEEE---ECCCCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence               134454  47899998   334567889998755323322 112111   23443 1368999987 3356888888


Q ss_pred             CCCCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +....-..+..  ......+++.-  +++||+.=...+.|..+|+..
T Consensus       153 ~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          153 MDGSERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             TTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence            87655444332  11222334433  466666543344566666544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.44  E-value=0.73  Score=42.42  Aligned_cols=146  Identities=8%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++.++.|+.+.        .+.+||..+..    -...-.-....    -.+++.. ++...+.|+   ....+.+||.
T Consensus       134 dg~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~h~~~----v~~~~~~p~~~~l~s~s---~d~~v~iwd~  194 (393)
T 1erj_A          134 DGKFLATGAEDR--------LIRIWDIENRK----IVMILQGHEQD----IYSLDYFPSGDKLVSGS---GDRTVRIWDL  194 (393)
T ss_dssp             TSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSSC----EEEEEECTTSSEEEEEE---TTSEEEEEET
T ss_pred             CCCEEEEEcCCC--------eEEEEECCCCc----EEEEEccCCCC----EEEEEEcCCCCEEEEec---CCCcEEEEEC
Confidence            567777777654        78899998776    32221111111    1233332 455444431   2345778998


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCCceEEcccc-----cccccc-eeEEEE-CCEEE
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWWDEVIEL-----AELKGA-EKITAA-RGRVC  345 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~-----p~~r~~-~~~~~~-~g~l~  345 (390)
                      .+.+-...-. .  ......++... ++++++.|+.++.+..||..+..-......     ...... .++... +|+.+
T Consensus       195 ~~~~~~~~~~-~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          195 RTGQCSLTLS-I--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             TTTEEEEEEE-C--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             CCCeeEEEEE-c--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence            8775433211 1  11111222212 788999999999999999987654322110     111122 223333 67777


Q ss_pred             EEeeCCceEEEEEcCCC
Q 016368          346 AVCENGERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+.+..|.+||+.+.
T Consensus       272 ~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEETTSEEEEEEC---
T ss_pred             EEEeCCCEEEEEECCCC
Confidence            77777889999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.41  E-value=0.34  Score=44.18  Aligned_cols=144  Identities=10%  Similarity=-0.006  Sum_probs=83.5

Q ss_pred             EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC-CCCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeC
Q 016368          197 VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL-KDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       197 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~-~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++++.|+.+.        .+.+||..+..    ....... .....   -.+++..  ++.+++.++   ....+.+||.
T Consensus        87 ~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~---~d~~i~iwd~  148 (383)
T 3ei3_B           87 TTVAVGSKGG--------DIILWDYDVQN----KTSFIQGMGPGDA---ITGMKFNQFNTNQLFVSS---IRGATTLRDF  148 (383)
T ss_dssp             TEEEEEEBTS--------CEEEEETTSTT----CEEEECCCSTTCB---EEEEEEETTEEEEEEEEE---TTTEEEEEET
T ss_pred             CEEEEEcCCC--------eEEEEeCCCcc----cceeeecCCcCCc---eeEEEeCCCCCCEEEEEe---CCCEEEEEEC
Confidence            5677776654        78899999887    5554432 11111   1334443  335555531   2345778999


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCE-EEEEeeC
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGR-VCAVCEN  350 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~-l~i~g~~  350 (390)
                      .+.....+...........+++...++.+++.|+.++.+..||.....-..+   ........ +... ++. +++.|+.
T Consensus       149 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          149 SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE---KLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             TSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE---ECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe---ccCCCcEEEEEECCCCCCEEEEEeC
Confidence            8766655543111111122333236788888999999999999864432222   22222222 3333 454 7777777


Q ss_pred             CceEEEEEcCC
Q 016368          351 GERIMVVDVLA  361 (390)
Q Consensus       351 ~~~v~~~d~~~  361 (390)
                      +..+.+||+.+
T Consensus       226 d~~i~iwd~~~  236 (383)
T 3ei3_B          226 DATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEEGGG
T ss_pred             CCEEEEEeCCC
Confidence            88999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.40  E-value=0.13  Score=46.17  Aligned_cols=146  Identities=15%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCE-EEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd  272 (390)
                      ++++|+.++.+.        .+.++|+.+++    ....-..+....   ....+. -+|+ +|+.+   .....+.+||
T Consensus        10 ~~~~~v~~~~~~--------~v~~~d~~~~~----~~~~~~~~~~~~---~~~~~~s~dg~~~~v~~---~~~~~i~~~d   71 (349)
T 1jmx_B           10 GHEYMIVTNYPN--------NLHVVDVASDT----VYKSCVMPDKFG---PGTAMMAPDNRTAYVLN---NHYGDIYGID   71 (349)
T ss_dssp             TCEEEEEEETTT--------EEEEEETTTTE----EEEEEECSSCCS---SCEEEECTTSSEEEEEE---TTTTEEEEEE
T ss_pred             CCEEEEEeCCCC--------eEEEEECCCCc----EEEEEecCCCCC---CceeEECCCCCEEEEEe---CCCCcEEEEe
Confidence            577888776543        78999998877    433222222101   123333 3554 77763   2345678999


Q ss_pred             CCCCCeEecCCCCCC-----CCCCceEEEeeCCeEEEEeCC------------CCcEEEEECCCCceEE-cccccccccc
Q 016368          273 VELDKWKEMPEGMHA-----GWNGPAASTMNEEELYVVNEG------------KGRLSKYDADHDWWDE-VIELAELKGA  334 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~-----~~~~~~~~~~~~g~lyv~gg~------------~~~v~~yd~~~~~W~~-i~~~p~~r~~  334 (390)
                      +.+.+-...-. .+.     ......++...+|+.++++..            .+.+.+||.++.+-.+ +.....+...
T Consensus        72 ~~t~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           72 LDTCKNTFHAN-LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             TTTTEEEEEEE-SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             CCCCcEEEEEE-cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence            98775432211 111     111223333246654444432            3689999988743221 1222222333


Q ss_pred             eeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          335 EKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       335 ~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++... +|++|+.   +.+++++|+.+.
T Consensus       151 ~~~~~s~dg~l~~~---~~~i~~~d~~~~  176 (349)
T 1jmx_B          151 YLMRAADDGSLYVA---GPDIYKMDVKTG  176 (349)
T ss_dssp             CCEEECTTSCEEEE---SSSEEEECTTTC
T ss_pred             cceeECCCCcEEEc---cCcEEEEeCCCC
Confidence            334443 6777764   234889998765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.37  E-value=1.3  Score=38.73  Aligned_cols=190  Identities=9%  Similarity=0.092  Sum_probs=93.8

Q ss_pred             eecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          144 GVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       144 ~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ...++++.+| . .      +.+.+||..+++...+-.+......- +++.. +++.++.|+.+.        .+.+||.
T Consensus        33 WS~~~~lAvg-~-D------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg--------~v~iw~~   96 (318)
T 4ggc_A           33 WSSGNVLAVA-L-D------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDV   96 (318)
T ss_dssp             ECTTSEEEEE-E-T------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------EEEEEET
T ss_pred             ECCCCEEEEE-e-C------CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC--------cEEEeec
Confidence            3455665554 2 1      46899999998765543332222222 22222 567777777664        7889999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE  301 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~  301 (390)
                      ++++    -.........     .......++.+.+.|+   .......++..+........ ..............++.
T Consensus        97 ~~~~----~~~~~~~h~~-----~~~~~~~~~~~l~s~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A           97 QQQK----RLRNMTSHSA-----RVGSLSWNSYILSSGS---RSGHIHHHDVRVAEHHVATL-SGHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             TTTE----EEEEEECCSS-----CEEEEEEETTEEEEEE---TTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSS
T ss_pred             CCce----eEEEecCccc-----eEEEeecCCCEEEEEe---cCCceEeeecCCCceeEEEE-cCccCceEEEEEcCCCC
Confidence            8876    3222211111     1223334555555531   12234455555443322111 11111112222235778


Q ss_pred             EEEEeCCCCcEEEEECCCCceE--Ecccccccccc-eeEEEE--CCEEEEEe-e-CCceEEEEEcCCC
Q 016368          302 LYVVNEGKGRLSKYDADHDWWD--EVIELAELKGA-EKITAA--RGRVCAVC-E-NGERIMVVDVLAS  362 (390)
Q Consensus       302 lyv~gg~~~~v~~yd~~~~~W~--~i~~~p~~r~~-~~~~~~--~g~l~i~g-~-~~~~v~~~d~~~~  362 (390)
                      .++.++.++.+..||..+.+-.  ........... ..+...  ++.+..+. + ....+.++|....
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            8888888999999998864321  11111111111 122222  34444332 2 2446778887665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.30  E-value=0.58  Score=41.36  Aligned_cols=100  Identities=11%  Similarity=0.021  Sum_probs=48.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCC----CcceEEEEE-CC-EEEEEeccCCCCCCC---ccCeEEEEECCCCccccccEEcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIP----RRWCAMGSV-GG-VVYVASGVGAHYRGD---VARSMKKWDLKSDREDWKWEKKA  234 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~----r~~~~~~~~-~~-~lyv~GG~~~~~~~~---~~~~~~~yd~~t~~~~~~W~~~~  234 (390)
                      ..+++||+.+++-...-+.+.+    ..-..++.. ++ .||+...........   ....+.+||..+.+    ....-
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----~~~~~  131 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----RRKAF  131 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----EEEEE
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc----EEEEE
Confidence            5799999988765331111110    011223333 34 677764221000000   23689999998876    33222


Q ss_pred             cCCCCCccccceEEEE-ECCE-EEEEcccCCCCceeEEEeCCCCCe
Q 016368          235 QLKDGRFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNVELDKW  278 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~~~~~W  278 (390)
                      ......     ..++. -+|+ +|+.      ...+.+||+.+.+-
T Consensus       132 ~~~~~~-----~~~~~s~dg~~l~~~------~~~i~~~d~~~~~~  166 (337)
T 1pby_B          132 EAPRQI-----TMLAWARDGSKLYGL------GRDLHVMDPEAGTL  166 (337)
T ss_dssp             ECCSSC-----CCEEECTTSSCEEEE------SSSEEEEETTTTEE
T ss_pred             eCCCCc-----ceeEECCCCCEEEEe------CCeEEEEECCCCcE
Confidence            222111     22222 3555 5555      24577888877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.29  E-value=2.6  Score=41.77  Aligned_cols=173  Identities=8%  Similarity=-0.020  Sum_probs=104.2

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcc--cCCC
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKA--QLKD  238 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~--~~~~  238 (390)
                      .+.++++++.....+.+..... ..-.++++  .+++||+.-.        ....++++++....    =+.+.  .+..
T Consensus        58 ~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD~~~~~LY~tD~--------~~~~I~v~~~dG~~----~~~l~~~~l~~  124 (628)
T 4a0p_A           58 LKTISRAFMNGSALEHVVEFGL-DYPEGMAVDWLGKNLYWADT--------GTNRIEVSKLDGQH----RQVLVWKDLDS  124 (628)
T ss_dssp             TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSTT----CEEEECSSCCC
T ss_pred             CCeEEEEECCCCCcEEEEeCCC-CCcceEEEEeCCCEEEEEEC--------CCCEEEEEecCCCc----EEEEEeCCCCC
Confidence            3578888887655444322111 11123444  3789999732        33589999987654    23332  2222


Q ss_pred             CCccccceEEEEE--CCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCCCCCCceEEEe-eCCeEEEEeCCCCcEEE
Q 016368          239 GRFSREAVEAVGF--KGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTM-NEEELYVVNEGKGRLSK  314 (390)
Q Consensus       239 ~~~~r~~~~~~~~--~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~g~lyv~gg~~~~v~~  314 (390)
                            ..++++.  +|.||+.-   .+ ...++++++....-+.+...+..+   .++++. .+++||+.....+.|++
T Consensus       125 ------P~~iavdp~~G~lY~tD---~g~~~~I~r~~~dG~~~~~l~~~~~~P---~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          125 ------PRALALDPAEGFMYWTE---WGGKPKIDRAAMDGSERTTLVPNVGRA---NGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             ------EEEEEEETTTTEEEEEE---CSSSCEEEEEETTSCSCEEEECSCSSE---EEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ------cccEEEccCCCeEEEeC---CCCCCEEEEEeCCCCceEEEECCCCCc---ceEEEccccCEEEEEECCCCEEEE
Confidence                  1445554  78999982   12 456778888766544433212111   133331 26899999988889999


Q ss_pred             EECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          315 YDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       315 yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +|.....=+.+..  .....+++++.++.||+.-...+.|+.+|..+.
T Consensus       193 ~d~dG~~~~v~~~--~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          193 SNMLGLNREVIAD--DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EETTSCSCEEEEE--CCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EcCCCCceEEeec--cCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence            9987543233321  233456888889999998555678999997654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.29  E-value=0.72  Score=40.52  Aligned_cols=149  Identities=8%  Similarity=0.027  Sum_probs=78.6

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE---CCEEEEEcccCCCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF---KGNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~---~g~lyv~gg~g~~~~~~~~y  271 (390)
                      +++.++.|+.+.        .+.+||..++.    .+.+..+......  -.+++..   ++.+.+.|+   ....+.++
T Consensus        20 ~g~~las~s~D~--------~v~iw~~~~~~----~~~~~~l~gH~~~--V~~v~~s~~~~g~~l~s~s---~D~~v~iW   82 (297)
T 2pm7_B           20 YGKRMATCSSDK--------TIKIFEVEGET----HKLIDTLTGHEGP--VWRVDWAHPKFGTILASCS---YDGKVMIW   82 (297)
T ss_dssp             TSSEEEEEETTS--------CEEEEEBCSSC----BCCCEEECCCSSC--EEEEEECCGGGCSEEEEEE---TTTEEEEE
T ss_pred             CCCEEEEEeCCC--------EEEEEecCCCC----cEEEEEEccccCC--eEEEEecCCCcCCEEEEEc---CCCEEEEE
Confidence            566777777654        67888887655    4333333211110  1233322   255555531   23457789


Q ss_pred             eCCCCCeEecCCCCCC-CCCCceEEEeeC--CeEEEEeCCCCcEEEEECCCCc-eEEcccccccccceeEEEE-------
Q 016368          272 NVELDKWKEMPEGMHA-GWNGPAASTMNE--EELYVVNEGKGRLSKYDADHDW-WDEVIELAELKGAEKITAA-------  340 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~-~~~~~~~~~~~~--g~lyv~gg~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~-------  340 (390)
                      |..+++|..+.. ... .....+++...+  +.+++.++.++.+..||..+.. +.. ..+.........+.+       
T Consensus        83 d~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           83 KEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC---
T ss_pred             EcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccc
Confidence            998887765433 111 111112222122  6788888899999999987652 321 111111111111111       


Q ss_pred             --------CCEEEEEeeCCceEEEEEcCCC
Q 016368          341 --------RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 --------~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                              ++++++.|+.+..|.+||+.+.
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence                    1456777777778889988654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.24  E-value=1.6  Score=39.11  Aligned_cols=174  Identities=9%  Similarity=-0.037  Sum_probs=101.2

Q ss_pred             CCCcEEEeCCCCc---eecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          163 LASPLAFNPQSNT---WFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       163 ~~~~~~~dp~t~~---W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      .+.++++++....   +.....+..   -.++++  .++.||+.-.        ....++++++....    -+.+..-.
T Consensus        56 ~~~I~r~~~~g~~~~~~~~~~~l~~---p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG~~----~~~l~~~~  120 (318)
T 3sov_A           56 EEAIKRTEFNKTESVQNVVVSGLLS---PDGLACDWLGEKLYWTDS--------ETNRIEVSNLDGSL----RKVLFWQE  120 (318)
T ss_dssp             TTEEEEEETTSSSCCCEEEEECCSC---CCEEEEETTTTEEEEEET--------TTTEEEEEETTSCS----CEEEECSS
T ss_pred             CCcEEEEEccCCCceEEEEcCCCCC---ccEEEEEcCCCeEEEEEC--------CCCEEEEEECCCCc----EEEEEeCC
Confidence            3578888887652   111111111   123444  3789998743        23578999987654    33332211


Q ss_pred             CCCccccceEEEEE--CCEEEEEcccCCC-CceeEEEeCCCCCeEec-CCCCCCCCCCceEEEe-eCCeEEEEeCCCCcE
Q 016368          238 DGRFSREAVEAVGF--KGNLCMVNLKGNG-AKDGAIYNVELDKWKEM-PEGMHAGWNGPAASTM-NEEELYVVNEGKGRL  312 (390)
Q Consensus       238 ~~~~~r~~~~~~~~--~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~-~~g~lyv~gg~~~~v  312 (390)
                      ...    ..+.++.  +|.||+..   .+ ...++++++....=+.+ ...+.   .-.++++. .+++||+.....+.|
T Consensus       121 ~~~----P~giavdp~~g~ly~td---~~~~~~I~r~~~dG~~~~~~~~~~l~---~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          121 LDQ----PRAIALDPSSGFMYWTD---WGEVPKIERAGMDGSSRFIIINSEIY---WPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             CSS----EEEEEEEGGGTEEEEEE---CSSSCEEEEEETTSCSCEEEECSSCS---CEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCC----ccEEEEeCCCCEEEEEe---cCCCCEEEEEEcCCCCeEEEEECCCC---CccEEEEeccCCEEEEEECCCCEE
Confidence            111    1344443  68999983   11 35678888764432222 22111   11234432 378999999888899


Q ss_pred             EEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          313 SKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++|.....=+.+.. ......+++++.++.||+.-..+..|..+|..+.
T Consensus       191 ~~~d~dG~~~~~~~~-~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          191 HKSNLDGTNRQAVVK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEEETTSCSCEEEEC-SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEcCCCCceEEEec-CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            999998644343332 1233456788889999998555778999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.23  E-value=1.4  Score=38.88  Aligned_cols=147  Identities=10%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      ++++++.|+.+.        .+.+++.....    ............   .......++..++.|+   ......++|..
T Consensus        97 dg~~l~s~~~d~--------~i~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~l~s~s---~d~~~~~~d~~  158 (340)
T 4aow_A           97 DGQFALSGSWDG--------TLRLWDLTTGT----TTRRFVGHTKDV---LSVAFSSDNRQIVSGS---RDKTIKLWNTL  158 (340)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSSCE---EEEEECTTSSCEEEEE---TTSCEEEECTT
T ss_pred             CCCEEEEEcccc--------cceEEeecccc----eeeeecCCCCce---eEEEEeecCccceeec---CCCeEEEEEeC
Confidence            566666776654        56778877766    333222222111   1111122344444431   12335577765


Q ss_pred             CCCeEecCCCCCCCCCCceEEEee--CCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCEEEEEeeC
Q 016368          275 LDKWKEMPEGMHAGWNGPAASTMN--EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAVCEN  350 (390)
Q Consensus       275 ~~~W~~~~~~~~~~~~~~~~~~~~--~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~  350 (390)
                      ...-..... .........+....  .+.+++.++.++.+..||..+..-..  .+........ ++.. ++++++.|+.
T Consensus       159 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          159 GVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT--NHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             SCEEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEe-ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee--EecCCCCcEEEEEECCCCCEEEEEeC
Confidence            443222222 11111111122111  34566777788899999998765432  2222222222 3332 6777777777


Q ss_pred             CceEEEEEcCCC
Q 016368          351 GERIMVVDVLAS  362 (390)
Q Consensus       351 ~~~v~~~d~~~~  362 (390)
                      +..+.+||+.+.
T Consensus       236 Dg~i~iwd~~~~  247 (340)
T 4aow_A          236 DGQAMLWDLNEG  247 (340)
T ss_dssp             TCEEEEEETTTT
T ss_pred             CCeEEEEEeccC
Confidence            889999998765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.22  E-value=0.79  Score=46.46  Aligned_cols=142  Identities=8%  Similarity=-0.083  Sum_probs=77.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++.|++++|...        .+.+||+.++.    ++....-...... ...+++. .+|.+++-+     .....+||+
T Consensus       482 ~g~lWi~~~t~~--------Gl~~~d~~~~~----~~~~~~~~~~~~~-~~~~i~~d~~g~lWigt-----~~Gl~~~~~  543 (758)
T 3ott_A          482 EGNVWVLLYNNK--------GIDKINPRTRE----VTKLFADELTGEK-SPNYLLCDEDGLLWVGF-----HGGVMRINP  543 (758)
T ss_dssp             TSCEEEEETTCS--------SEEEEETTTTE----EEEECTTTSCGGG-CEEEEEECTTSCEEEEE-----TTEEEEECC
T ss_pred             CCCEEEEccCCC--------CcEEEeCCCCc----eEEecCCCcCCCc-ccceEEECCCCCEEEEe-----cCceEEEec
Confidence            578888665432        57889999988    7765321110000 0122332 256777652     234678999


Q ss_pred             CCCCeEecCC-CCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEE-ECCEEEEEeeCC
Q 016368          274 ELDKWKEMPE-GMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITA-ARGRVCAVCENG  351 (390)
Q Consensus       274 ~~~~W~~~~~-~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~-~~g~l~i~g~~~  351 (390)
                      .+++++.... .++. ....+++. .+|.|++..  .+.+.+||+++.+..... ++.......+.. -+|.||+-  ..
T Consensus       544 ~~~~~~~~~~~gl~~-~~i~~i~~-~~g~lWi~t--~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~l~fG--~~  616 (758)
T 3ott_A          544 KDESQQSISFGSFSN-NEILSMTC-VKNSIWVST--TNGLWIIDRKTMDARQQN-MTNKRFTSLLFDPKEDCVYLG--GA  616 (758)
T ss_dssp             --CCCCBCCCCC----CCEEEEEE-ETTEEEEEE--SSCEEEEETTTCCEEEC---CCCCCSEEEEETTTTEEEEE--CB
T ss_pred             CCCceEEecccCCCc-cceEEEEE-CCCCEEEEC--CCCeEEEcCCCceeEEec-CCCCceeeeEEECCCCcEEEe--cC
Confidence            9888776532 1222 12223333 578888765  356899999998876653 332222222222 27788874  33


Q ss_pred             ceEEEEEcCC
Q 016368          352 ERIMVVDVLA  361 (390)
Q Consensus       352 ~~v~~~d~~~  361 (390)
                      +.+..+|+..
T Consensus       617 ~Gl~~f~p~~  626 (758)
T 3ott_A          617 DGFGISHSNL  626 (758)
T ss_dssp             SEEEEEEC--
T ss_pred             CceEEEChhh
Confidence            4677777764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.20  E-value=0.48  Score=42.07  Aligned_cols=158  Identities=14%  Similarity=0.218  Sum_probs=79.2

Q ss_pred             cEEEeCCCC-ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcccc
Q 016368          166 PLAFNPQSN-TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSRE  244 (390)
Q Consensus       166 ~~~~dp~t~-~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~  244 (390)
                      ++.||+..+ .|+.....  . .....+..++.||+...         ...+.+||+. +.  ..|+.......  .   
T Consensus        80 l~~~d~~g~~~~~~~~~~--~-~~~~~~~~~~~l~v~t~---------~~~l~~~d~~-g~--~~~~~~~~~~~--~---  139 (330)
T 3hxj_A           80 VYAINPDGTEKWRFDTKK--A-IVSDFTIFEDILYVTSM---------DGHLYAINTD-GT--EKWRFKTKKAI--Y---  139 (330)
T ss_dssp             EEEECCCGGGGGGSCC--------CCEEEETTEEEEECT---------TSEEEEECTT-SC--EEEEEECSSCC--C---
T ss_pred             EEEECCCCcEEEEEECCC--C-cccCceEECCEEEEEec---------CCEEEEEcCC-CC--EEEEEcCCCce--e---
Confidence            888997433 34432111  1 11223334888887431         1368889988 33  12765432221  1   


Q ss_pred             ceEEEEE-CCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC-Cc
Q 016368          245 AVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH-DW  321 (390)
Q Consensus       245 ~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~-~~  321 (390)
                       .+.+.. +|.+|+..    .......||+... .|+....   ... ....+...+|.||+..   +.++.||... ..
T Consensus       140 -~~~~~~~~g~l~vgt----~~~~l~~~d~~g~~~~~~~~~---~~~-~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~  207 (330)
T 3hxj_A          140 -ATPIVSEDGTIYVGS----NDNYLYAINPDGTEKWRFKTN---DAI-TSAASIGKDGTIYFGS---DKVYAINPDGTEK  207 (330)
T ss_dssp             -SCCEECTTSCEEEEC----TTSEEEEECTTSCEEEEEECS---SCC-CSCCEECTTCCEEEES---SSEEEECTTSCEE
T ss_pred             -eeeEEcCCCEEEEEc----CCCEEEEECCCCCEeEEEecC---CCc-eeeeEEcCCCEEEEEe---CEEEEECCCCcEE
Confidence             223334 77888763    2355778998722 3655322   111 1223321477777655   7889999442 24


Q ss_pred             eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      |+.....   ....+++.. +|.||+. ..+..++.+|.
T Consensus       208 ~~~~~~~---~~~~~~~~~~~g~l~v~-t~~~gl~~~~~  242 (330)
T 3hxj_A          208 WNFYAGY---WTVTRPAISEDGTIYVT-SLDGHLYAINP  242 (330)
T ss_dssp             EEECCSS---CCCSCCEECTTSCEEEE-ETTTEEEEECT
T ss_pred             EEEccCC---cceeceEECCCCeEEEE-cCCCeEEEECC
Confidence            6544321   112223333 4567665 33446666664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.15  E-value=1  Score=40.11  Aligned_cols=145  Identities=7%  Similarity=0.028  Sum_probs=80.7

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCC
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      +.+++.|+.+.        .+.+||..+..    ......+......  -.+++.. +++..+.|+   ....+.+||..
T Consensus        54 g~~l~~~~~dg--------~i~iw~~~~~~----~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~---~dg~v~iwd~~  116 (368)
T 3mmy_A           54 GNFLIAGSWAN--------DVRCWEVQDSG----QTIPKAQQMHTGP--VLDVCWSDDGSKVFTAS---CDKTAKMWDLS  116 (368)
T ss_dssp             SEEEEEEETTS--------EEEEEEECTTS----CEEEEEEEECSSC--EEEEEECTTSSEEEEEE---TTSEEEEEETT
T ss_pred             ceEEEEECCCC--------cEEEEEcCCCC----ceeEEEeccccCC--EEEEEECcCCCEEEEEc---CCCcEEEEEcC
Confidence            47777777664        68899998744    3322222111110  1223322 555555531   23457789998


Q ss_pred             CCCeEecCCCCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCc
Q 016368          275 LDKWKEMPEGMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGE  352 (390)
Q Consensus       275 ~~~W~~~~~~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~  352 (390)
                      +.+-.....   .......+..  ..++.+++.++.++.+..||..+.+-.  ..+........+....+.+++ +..+.
T Consensus       117 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~  190 (368)
T 3mmy_A          117 SNQAIQIAQ---HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM--MVLQLPERCYCADVIYPMAVV-ATAER  190 (368)
T ss_dssp             TTEEEEEEE---CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS--EEEECSSCEEEEEEETTEEEE-EEGGG
T ss_pred             CCCceeecc---ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE--EEEecCCCceEEEecCCeeEE-EeCCC
Confidence            876554322   1111122221  257888889988999999998875422  222222233334444554444 46667


Q ss_pred             eEEEEEcCCCC
Q 016368          353 RIMVVDVLASP  363 (390)
Q Consensus       353 ~v~~~d~~~~~  363 (390)
                      .+.+||+....
T Consensus       191 ~i~~~~~~~~~  201 (368)
T 3mmy_A          191 GLIVYQLENQP  201 (368)
T ss_dssp             CEEEEECSSSC
T ss_pred             cEEEEEecccc
Confidence            89999987753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.12  E-value=0.0064  Score=56.37  Aligned_cols=186  Identities=11%  Similarity=0.098  Sum_probs=77.7

Q ss_pred             EEeecCeEEEEEeecCCCCCCCCCcEEEeCCCC--ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEE
Q 016368          142 SLGVRNNLVLIAATTPHFLPALASPLAFNPQSN--TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       142 ~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      ..++.++.+++++..       ..++.+|..++  .|+.-..    ......++.++++|+.++.+.        .+.++
T Consensus         4 sP~v~~~~v~~gs~d-------g~v~a~d~~tG~~~W~~~~~----~~~s~p~~~~g~~~v~~s~dg--------~l~a~   64 (369)
T 2hz6_A            4 TVTLPETLLFVSTLD-------GSLHAVSKRTGSIKWTLKED----PVLQVPTHVEEPAFLPDPNDG--------SLYTL   64 (369)
T ss_dssp             ----CTTEEEEEETT-------SEEEEEETTTCCEEEEEECC----CSCCCC-----CCEEECTTTC--------CEEEC
T ss_pred             CCeeeCCEEEEEcCC-------CEEEEEECCCCCEEEEecCC----CceecceEcCCCEEEEeCCCC--------EEEEE
Confidence            344567777777532       36888998887  4654221    111222344677887765443        68889


Q ss_pred             ECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEe
Q 016368          220 DLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTM  297 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~  297 (390)
                      |.++++..  |+.-...+....   ...++..++.+|+-+    ......++|.+++  .|+.-.. ..     ...+- 
T Consensus        65 d~~tG~~~--w~~~~~~~~~~~---~sp~~~~~~~v~~g~----~dg~v~a~D~~tG~~~w~~~~~-~~-----~~~~p-  128 (369)
T 2hz6_A           65 GSKNNEGL--TKLPFTIPELVQ---ASPCRSSDGILYMGK----KQDIWYVIDLLTGEKQQTLSSA-FA-----DSLSP-  128 (369)
T ss_dssp             -----CCS--EECSCCHHHHHT---TCSCC-----CCCCE----EEEEEEEECCC-------------------------
T ss_pred             ECCCCcee--eeeeccCccccc---cCceEecCCEEEEEe----CCCEEEEEECCCCcEEEEecCC-Cc-----ccccc-
Confidence            98776533  442111110000   011111455555431    1233567888765  4664332 10     11111 


Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCc--eEEcccccccccceeEEE-----ECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDW--WDEVIELAELKGAEKITA-----ARGRVCAVCENGERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~-----~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~  370 (390)
                      .++.|| ++..++.+..||.++.+  |+.-..-     ....+.     .++.+|+. ..+..++.+|..+.. ..|+..
T Consensus       129 ~~~~v~-~~~~dg~v~a~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~-~~dg~v~a~d~~tG~-~~W~~~  200 (369)
T 2hz6_A          129 STSLLY-LGRTEYTITMYDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVS-NGDGLVVTVDSESGD-VLWIQN  200 (369)
T ss_dssp             ----EE-EEEEEEEEECCCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEE-ETSCEEEEECTTTCC-EEEEEE
T ss_pred             cCCEEE-EEecCCEEEEEECCCCCEEEeEeccc-----ccCccccCCccccceEEEE-CCCCEEEEEECCCCc-EEEEec
Confidence            344444 45556688999987654  7643210     011111     12566664 556688899987653 358743

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.09  E-value=1.9  Score=39.09  Aligned_cols=201  Identities=9%  Similarity=-0.028  Sum_probs=99.3

Q ss_pred             CceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368           98 SSMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ....++.+|+.+++-..+...+......               ....-++..+++...       -..++++|+.+++-+
T Consensus        58 g~~~l~~~d~~~g~~~~lt~~~~~~~~~---------------~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           58 GPWNYYLLDLNTQVATQLTEGRGDNTFG---------------GFLSPDDDALFYVKD-------GRNLMRVDLATLEEN  115 (388)
T ss_dssp             SSCEEEEEETTTCEEEECCCSSCBCSSS---------------CEECTTSSEEEEEET-------TTEEEEEETTTCCEE
T ss_pred             CCceEEEEeCCCCceEEeeeCCCCCccc---------------eEEcCCCCEEEEEeC-------CCeEEEEECCCCcce
Confidence            4457899999988877776444311101               222334555554432       147899999988766


Q ss_pred             cCCCCCCCCcceEEEE--ECCEEEEEeccCCC--------------CCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          178 FGPQLSIPRRWCAMGS--VGGVVYVASGVGAH--------------YRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~--------------~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      .+...+..........  -++++++.--....              ........++++|+.++.    -+.+..-... .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~l~~~~~~-~  190 (388)
T 3pe7_A          116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----STVILQENQW-L  190 (388)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----EEEEEEESSC-E
T ss_pred             eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----eEEeecCCcc-c
Confidence            5544333222112111  24443332110000              001133578999999887    5555432211 1


Q ss_pred             cccceEEEEE-CCEEEEEcccC---CCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCC----cE
Q 016368          242 SREAVEAVGF-KGNLCMVNLKG---NGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKG----RL  312 (390)
Q Consensus       242 ~r~~~~~~~~-~g~lyv~gg~g---~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~----~v  312 (390)
                         ......- +|+..++...+   .....+..+|..+...+.+.. ..............+|+ |+.+....+    .+
T Consensus       191 ---~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (388)
T 3pe7_A          191 ---GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT-HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI  266 (388)
T ss_dssp             ---EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC-CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred             ---cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee-CCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence               1222223 45533332111   113467788888777666654 21111111122224666 544433222    39


Q ss_pred             EEEECCCCceEEccccc
Q 016368          313 SKYDADHDWWDEVIELA  329 (390)
Q Consensus       313 ~~yd~~~~~W~~i~~~p  329 (390)
                      ++||.++.+-+.+..++
T Consensus       267 ~~~d~~~g~~~~l~~~~  283 (388)
T 3pe7_A          267 YSADPETLENRQLTSMP  283 (388)
T ss_dssp             EEECTTTCCEEEEEEEC
T ss_pred             EEEecCCCceEEEEcCC
Confidence            99999998877665544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.07  E-value=1.9  Score=41.69  Aligned_cols=147  Identities=7%  Similarity=-0.037  Sum_probs=80.4

Q ss_pred             EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc-cceEEEEE-C-CEEEEEcccCCCCceeEEEeCC
Q 016368          198 VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR-EAVEAVGF-K-GNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       198 lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r-~~~~~~~~-~-g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      +++.|+.+.        .+.+||..+..    -  +..+....... ...+++.. + ++.++.|+   ....+.+||..
T Consensus       175 ~l~~~~~d~--------~v~vwd~~~~~----~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~  237 (615)
T 1pgu_A          175 RSMTVGDDG--------SVVFYQGPPFK----F--SASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDRKISCFDGK  237 (615)
T ss_dssp             EEEEEETTT--------EEEEEETTTBE----E--EEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTCCEEEEETT
T ss_pred             EEEEEeCCC--------cEEEEeCCCcc----e--eeeecccCCCCceEEEEEECCCCCCEEEEEe---CCCeEEEEECC
Confidence            666666553        78889987755    2  22222110000 01233332 4 56666542   23457799988


Q ss_pred             CCCeEecCCCC--CCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccc---cccceeEEEECCEEEEEee
Q 016368          275 LDKWKEMPEGM--HAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAE---LKGAEKITAARGRVCAVCE  349 (390)
Q Consensus       275 ~~~W~~~~~~~--~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~---~r~~~~~~~~~g~l~i~g~  349 (390)
                      +.+-...-...  ........+... ++..++.++.++.+..||..+.+-...-..+.   ......+...++..++.|.
T Consensus       238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  316 (615)
T 1pgu_A          238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  316 (615)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence            77644322100  111222233333 88888999889999999998765433322221   1122233333666777777


Q ss_pred             CCceEEEEEcCCC
Q 016368          350 NGERIMVVDVLAS  362 (390)
Q Consensus       350 ~~~~v~~~d~~~~  362 (390)
                      .+..+.+||+.+.
T Consensus       317 ~~g~i~~~d~~~~  329 (615)
T 1pgu_A          317 LDGTLNFYELGHD  329 (615)
T ss_dssp             TTSCEEEEETTEE
T ss_pred             CCCCEEEEECCCC
Confidence            7889999998753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.07  E-value=3  Score=41.25  Aligned_cols=174  Identities=10%  Similarity=-0.014  Sum_probs=101.9

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc--CCC
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ--LKD  238 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~--~~~  238 (390)
                      .+.++++++.....+.+...... .-.++++  .++.||+.-.        ....+++.++....    -+.+..  +..
T Consensus       370 ~~~I~r~~~~g~~~~~v~~~~~~-~p~GlAvD~~~~~lY~tD~--------~~~~I~v~~~~G~~----~~~l~~~~l~~  436 (619)
T 3s94_A          370 VRAIRRSFIDGSGSQFVVTAQIA-HPDGIAVDWVARNLYWTDT--------GTDRIEVTRLNGTM----RKILISEDLEE  436 (619)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCS----CEEEECTTCCS
T ss_pred             CCeEEEEEcCCCccEEEEECCCC-CcCceEEecccCcEEEEeC--------CCCcEEEEeCCCCe----EEEEEECCCCC
Confidence            35688888876555443221111 1123444  3789999732        34588999987665    344432  222


Q ss_pred             CCccccceEEEEE--CCEEEEEcccCCC-CceeEEEeCCCCCeEecCCCCCCCCCCc-eEEEe-eCCeEEEEeCCCCcEE
Q 016368          239 GRFSREAVEAVGF--KGNLCMVNLKGNG-AKDGAIYNVELDKWKEMPEGMHAGWNGP-AASTM-NEEELYVVNEGKGRLS  313 (390)
Q Consensus       239 ~~~~r~~~~~~~~--~g~lyv~gg~g~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~g~lyv~gg~~~~v~  313 (390)
                      +      .+.++.  +|.||+..   .+ ...++..++....=+.+..   .....+ ++++. .+++||+.....+.|+
T Consensus       437 P------~~iavdp~~G~ly~tD---~g~~~~I~r~~~dG~~~~~l~~---~~l~~P~GlalD~~~~~LY~aD~~~~~I~  504 (619)
T 3s94_A          437 P------RAIVLDPMVGYMYWTD---WGEIPKIERAALDGSDRVVLVN---TSLGWPNGLALDYDEGKIYWGDAKTDKIE  504 (619)
T ss_dssp             E------EEEEEETTTTEEEEEE---CSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             e------eeEEEEcCCCcEEEec---CCCCCEEEEEccCCCccEEEEe---CCCCCCeeeEEcccCCEEEEEECCCCEEE
Confidence            1      345554  68999982   11 2456777765432222221   111122 34431 3689999998888999


Q ss_pred             EEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          314 KYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++|+....=+.+.. ......+++++.++.||+.-.....|+..|..+.
T Consensus       505 ~~~~dG~~~~~~~~-~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          505 VMNTDGTGRRVLVE-DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEESSSCCCEEEEE-CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC
T ss_pred             EEecCCCceEEEec-cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC
Confidence            99987544333321 1223456888899999998555668888888776

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.05  E-value=0.19  Score=47.42  Aligned_cols=144  Identities=16%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCE-EEEEcccC-CCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGN-LCMVNLKG-NGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~-lyv~gg~g-~~~~~~~~y  271 (390)
                      ++.||+.--        . ..+.++|+.++.    .+.+......     ...+++ .+|+ ||+....+ ........+
T Consensus       149 ~g~Lyv~d~--------~-~~I~~id~~~~~----v~~~~~~~~~-----P~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          149 HNHLYLVGE--------Q-HPTRLIDFEKEY----VSTVYSGLSK-----VRTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             EEEEEEEEB--------T-EEEEEEETTTTE----EEEEECCCSC-----EEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCeEEEEeC--------C-CcEEEEECCCCE----EEEEecCCCC-----cceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            477898732        1 588999999987    6665442111     133333 3455 99884221 112234456


Q ss_pred             eCCCCCeE---ecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EE
Q 016368          272 NVELDKWK---EMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VC  345 (390)
Q Consensus       272 d~~~~~W~---~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~  345 (390)
                      +.. ..|.   .+.. .   .....+++.. +|.||+.....+.+++||+.+..-..+..++.......++.. +|+ ||
T Consensus       211 ~~~-g~~~~~~~l~~-~---~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          211 TRE-SGFKVITELTK-G---QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             EGG-GTSCSEEEEEE-C---SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             eCC-Cceeeeeeecc-C---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            643 3333   2222 1   1123444323 789999988778999999987655444433332333456554 454 99


Q ss_pred             EEeeCCceEEEEEcCC
Q 016368          346 AVCENGERIMVVDVLA  361 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~  361 (390)
                      +.-...+.|+.+|...
T Consensus       286 v~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEeCCc
Confidence            9866677888887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.01  E-value=1.4  Score=38.90  Aligned_cols=93  Identities=13%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368          266 KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVC  345 (390)
Q Consensus       266 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~  345 (390)
                      ..+.+||..+.+-...-. . ......+++...++++++.|+.++.+..||..+..  .+..+........+....+..+
T Consensus       195 ~~i~i~d~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~  270 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHI-G-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYW  270 (340)
T ss_dssp             SCEEEEETTTTEEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECSSCEEEEEECSSSSE
T ss_pred             CEEEEEECCCCceeeEec-C-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--eeeeecCCceEEeeecCCCCce
Confidence            346788888765433211 1 11111223323578899999999999999988643  3333322222223333344444


Q ss_pred             EEeeCCceEEEEEcCCC
Q 016368          346 AVCENGERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~~  362 (390)
                      +.++.+..+.+||+.+.
T Consensus       271 ~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          271 LCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEETTEEEEEETTTT
T ss_pred             eeccCCCEEEEEECCCC
Confidence            45555678889988754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.99  E-value=3.2  Score=41.26  Aligned_cols=185  Identities=8%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCC-ccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSD-REDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~~~~~W~~~~~~~~~~  240 (390)
                      ..+++||..+++-..+...............  +++..+++..+.   ......+.++|..+. .    .+.+.......
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~~v~~~d~~~g~~----~~~~~~~~~~~  307 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR---AQNECKVNAYDAETGRF----VRTLFVETDKH  307 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT---TSCEEEEEEEETTTCCE----EEEEEEEECSS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC---CCCeeEEEEEECCCCce----eeEEEEccCCC
Confidence            5689999998876555432111122222222  555444443332   223458899999988 5    55543211111


Q ss_pred             ccccceE-EEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce-EEEeeCC-eEEEEeCCCC----c
Q 016368          241 FSREAVE-AVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA-ASTMNEE-ELYVVNEGKG----R  311 (390)
Q Consensus       241 ~~r~~~~-~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~g-~lyv~gg~~~----~  311 (390)
                      ....... ...-  +|++++.+.. .+....+.+|...+....+.. -  ...... ++...+| .||+.+..++    .
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~-~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTTGRLIRQVTK-G--EWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECT-TSSCEEEEEETTSCEEEECCC-S--SSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             eECccCCceeecCCCCEEEEEEcc-CCccEEEEEECCCCEEEecCC-C--CeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            0000011 2223  7776655422 123456677766666666644 1  111112 2222344 5666665544    8


Q ss_pred             EEEEECCCCceEEcccccccccceeEEEE-CCEEEEEe-eCC---ceEEEEEcCCC
Q 016368          312 LSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVC-ENG---ERIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g-~~~---~~v~~~d~~~~  362 (390)
                      ++.+|..+...+.+..   ....+.+... +|+.+++. ...   ..++++|+.+.
T Consensus       384 l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          384 FYCIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEEEETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEEcCCCCceeccC---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            9999998877665542   2222333333 55544443 221   35888887654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.95  E-value=0.74  Score=46.02  Aligned_cols=175  Identities=9%  Similarity=0.007  Sum_probs=87.1

Q ss_pred             CCcEEEeCCCCceec-CCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFF-GPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~-~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++-.. +...  ...-.+++.. +++.++.|+.+.        .+.+||......   ............
T Consensus       452 g~v~vwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~--------~i~iwd~~~~~~---~~~~~~~~~h~~  518 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGH--TKDVLSVAFSLDNRQIVSASRDR--------TIKLWNTLGECK---YTISEGGEGHRD  518 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECC--SSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSCEE---EEECSSTTSCSS
T ss_pred             CcEEEEECCCCcceeEEeCC--CCCEEEEEEeCCCCEEEEEeCCC--------EEEEEECCCCcc---eeeccCCCCCCC
Confidence            468899988764322 1110  0111122222 556666666654        677888765540   222111111111


Q ss_pred             cccceEEEEE--CC--EEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          242 SREAVEAVGF--KG--NLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~~--~g--~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                         ...++.+  ++  ..++.|+   ....+.+||+.+.+-...-. - ......+++...++++++.|+.++.+..||.
T Consensus       519 ---~v~~~~~~~~~~~~~l~s~s---~d~~v~vwd~~~~~~~~~~~-~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          519 ---WVSCVRFSPNTLQPTIVSAS---WDKTVKVWNLSNCKLRSTLA-G-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             ---CEEEEEECSCSSSCEEEEEE---TTSCEEEEETTTCCEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred             ---cEEEEEEeCCCCcceEEEEe---CCCeEEEEECCCCcEEEEEc-C-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence               1222222  22  2344421   23457789988765432211 0 1111122332357899999999999999999


Q ss_pred             CCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          318 DHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+.+  .+..+.......+++.. ++.+.+. +....|.+||+.+.
T Consensus       591 ~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          591 AEGK--KLYSLEANSVIHALCFSPNRYWLCA-ATEHGIKIWDLESK  633 (694)
T ss_dssp             TTTE--EEECCBCSSCEEEEEECSSSSEEEE-EETTEEEEEETTTT
T ss_pred             CCCc--eEEEecCCCcEEEEEEcCCCcEEEE-EcCCCEEEEECCCC
Confidence            8764  23333222223334444 4444444 44557999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.90  E-value=2.1  Score=38.72  Aligned_cols=136  Identities=12%  Similarity=0.037  Sum_probs=72.6

Q ss_pred             cCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE--CCE-EEEEcccCCC---CceeEEEeCCCCCeEecCCCCC
Q 016368          213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF--KGN-LCMVNLKGNG---AKDGAIYNVELDKWKEMPEGMH  286 (390)
Q Consensus       213 ~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~-lyv~gg~g~~---~~~~~~yd~~~~~W~~~~~~~~  286 (390)
                      ...++++|+.++.    .+.+......     ....+..  +++ +++... +..   ...+.++|..+.++..+.. ..
T Consensus       167 ~~~l~~~d~~~g~----~~~~~~~~~~-----~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~  235 (396)
T 3c5m_A          167 TCRLIKVDIETGE----LEVIHQDTAW-----LGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HA  235 (396)
T ss_dssp             CEEEEEEETTTCC----EEEEEEESSC-----EEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CC
T ss_pred             cceEEEEECCCCc----EEeeccCCcc-----cccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cC
Confidence            3478899998887    6655432211     1222222  344 544431 111   1457889998887776654 11


Q ss_pred             CCCCCceEEEeeCCe-EEEEeCC--CC--cEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEee-----------
Q 016368          287 AGWNGPAASTMNEEE-LYVVNEG--KG--RLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCE-----------  349 (390)
Q Consensus       287 ~~~~~~~~~~~~~g~-lyv~gg~--~~--~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~-----------  349 (390)
                      ............+|+ |++....  ..  .+++||..+.+...+...+..  . ..... +|+++++..           
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC--------
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeecccc
Confidence            111111122224665 4444321  22  499999998877776544421  1 22223 677666533           


Q ss_pred             -----CCceEEEEEcCCC
Q 016368          350 -----NGERIMVVDVLAS  362 (390)
Q Consensus       350 -----~~~~v~~~d~~~~  362 (390)
                           +...++++|+.+.
T Consensus       313 ~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             --CCCCCCEEEEEETTTT
T ss_pred             ccccCCCCcEEEEecccC
Confidence                 2357999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.86  E-value=0.94  Score=44.65  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             EEEEECCEEEEEeccCCCCCCCccCeEEEEEC-CCCccccccEEcccCCCC-----CccccceEEEE--ECCE----EEE
Q 016368          190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDL-KSDREDWKWEKKAQLKDG-----RFSREAVEAVG--FKGN----LCM  257 (390)
Q Consensus       190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~-~t~~~~~~W~~~~~~~~~-----~~~r~~~~~~~--~~g~----lyv  257 (390)
                      +-++.++.||+.+..        ...+.++|. .|++.  .|+.-......     .+.....+.++  .+++    +|+
T Consensus        57 tP~v~~g~vyv~~~~--------~~~v~AlD~~~tG~~--lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v  126 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF--------PNNTFALGLDDPGTI--LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK  126 (599)
T ss_dssp             CCEEETTEEEEECST--------TTCEEEEETTCTTSE--EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred             ccEEECCEEEEEeCC--------CCEEEEEeCCCCCcE--EEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence            345679999998642        236889999 77763  48865443211     00000122344  5777    888


Q ss_pred             EcccCCCCceeEEEeCCCC--CeEecCCCCCCC-CCCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEEc
Q 016368          258 VNLKGNGAKDGAIYNVELD--KWKEMPEGMHAG-WNGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDEV  325 (390)
Q Consensus       258 ~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~i  325 (390)
                      ..    ....+.++|.+++  .|+.-....... ....+.++ .+|.||+-.+     .++.+..||.++.+  |+.-
T Consensus       127 ~t----~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          127 TQ----LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EC----TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             Ec----CCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            74    2345778998876  588643211111 11222233 6888876543     36789999998765  8754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.73  E-value=1.2  Score=44.50  Aligned_cols=118  Identities=15%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-----ccccceEEEEECCEEEEEcccCCCC
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-----FSREAVEAVGFKGNLCMVNLKGNGA  265 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-----~~r~~~~~~~~~g~lyv~gg~g~~~  265 (390)
                      -++.+++||+....         ..+..+|..|++.  .|+.-...+...     +.....+.++.++++|+..    ..
T Consensus        62 P~v~~g~vyv~~~~---------~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~d  126 (668)
T 1kv9_A           62 PLFHDGVIYTSMSW---------SRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT----LD  126 (668)
T ss_dssp             CEEETTEEEEEEGG---------GEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC----TT
T ss_pred             CEEECCEEEEECCC---------CeEEEEECCCChh--ceEECCCCCccccccccccCCccceEEECCEEEEEc----CC
Confidence            45679999997642         3688899888763  387644322110     0000123455789999874    34


Q ss_pred             ceeEEEeCCCC--CeEecCCCCCCC-CCCceEEEeeCCeEEEEeCC-----CCcEEEEECCCCc--eEE
Q 016368          266 KDGAIYNVELD--KWKEMPEGMHAG-WNGPAASTMNEEELYVVNEG-----KGRLSKYDADHDW--WDE  324 (390)
Q Consensus       266 ~~~~~yd~~~~--~W~~~~~~~~~~-~~~~~~~~~~~g~lyv~gg~-----~~~v~~yd~~~~~--W~~  324 (390)
                      ..+.++|.+++  .|+......... ....+.++ .++.+|+..+.     ++.++.||.++.+  |+.
T Consensus       127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            55789998876  588754311111 12223333 68888775432     4689999998765  875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.70  E-value=2  Score=37.59  Aligned_cols=155  Identities=9%  Similarity=-0.001  Sum_probs=71.6

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCc-------eecCCCCCCCCcceE-EEEE-C--CEEEEEeccCCCCCCCccCe
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNT-------WFFGPQLSIPRRWCA-MGSV-G--GVVYVASGVGAHYRGDVARS  215 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~-------W~~~~~~~~~r~~~~-~~~~-~--~~lyv~GG~~~~~~~~~~~~  215 (390)
                      +.+++.++..       ..+.+||..+++       |+.+..+........ ++.. +  +.+++.|+.+.        .
T Consensus        71 ~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--------~  135 (351)
T 3f3f_A           71 GRIIASASYD-------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG--------I  135 (351)
T ss_dssp             CSEEEEEETT-------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC--------E
T ss_pred             CCEEEEEcCC-------CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC--------c
Confidence            4566665432       467888887652       222222222222222 2222 3  66677766554        7


Q ss_pred             EEEEECCCCccccccEEccc---CCCC--CccccceEEEEE----CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCC
Q 016368          216 MKKWDLKSDREDWKWEKKAQ---LKDG--RFSREAVEAVGF----KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMH  286 (390)
Q Consensus       216 ~~~yd~~t~~~~~~W~~~~~---~~~~--~~~r~~~~~~~~----~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~  286 (390)
                      +.+||..+......|.....   +...  .......+....    ++.+++.|+.   ......++....+...+.....
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~  212 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRGKDGKLHVAAKLPG  212 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEECTTSCEEEEEECCC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC---CCcEEEEccCCCceeeeeecCC
Confidence            88999876652111321110   1000  000001222221    2556665421   1223455555555543333111


Q ss_pred             CCCCCceEEEeeCC----eEEEEeCCCCcEEEEECCC
Q 016368          287 AGWNGPAASTMNEE----ELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       287 ~~~~~~~~~~~~~g----~lyv~gg~~~~v~~yd~~~  319 (390)
                      ....-.+++...++    .+++.|+.++.+..||..+
T Consensus       213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            11112233332444    7888888899888888765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.68  E-value=1.3  Score=44.39  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-----ccccceEEEEECCEEEEEcccCCCC
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-----FSREAVEAVGFKGNLCMVNLKGNGA  265 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-----~~r~~~~~~~~~g~lyv~gg~g~~~  265 (390)
                      -++.+++||+.+..         ..+..+|..|++.  .|+.-...+...     +.....+.++.++++|+.+    ..
T Consensus        66 P~v~~g~vyv~~~~---------~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~----~d  130 (689)
T 1yiq_A           66 PIVVDGVMYTTGPF---------SVVYALDARDGRL--IWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV----LD  130 (689)
T ss_dssp             CEEETTEEEEECGG---------GCEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC----TT
T ss_pred             CEEECCEEEEEcCC---------CeEEEEECCCCce--eEEEcCCCCccccccccccCCCCccEEECCEEEEEc----cC
Confidence            35679999997542         3688999988773  488644322110     0000123456899999874    34


Q ss_pred             ceeEEEeCCCC--CeEecCC-CCCC-CCCCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEEc
Q 016368          266 KDGAIYNVELD--KWKEMPE-GMHA-GWNGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDEV  325 (390)
Q Consensus       266 ~~~~~yd~~~~--~W~~~~~-~~~~-~~~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~i  325 (390)
                      ..+..+|.+++  .|+.... .... .....+.++ .+|.+|+-.+     .++.++.||.++.+  |+.-
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            55788999876  5886542 1111 111223333 7888887533     24689999998865  8753

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.66  E-value=4.2  Score=41.05  Aligned_cols=169  Identities=11%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc----CCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ----LKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~----~~~~  239 (390)
                      +.+.+||+.+.++...... ....-.+....++.|++..          ...+.+||+.++.    .+....    ++..
T Consensus        82 ~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt----------~~Gl~~~~~~~~~----~~~~~~~~~~l~~~  146 (758)
T 3ott_A           82 NGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGA----------LNGLYTYQLQSRK----LTSFDTRRNGLPNN  146 (758)
T ss_dssp             TEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEE----------TTEEEEEETTTCC----EEEECHHHHCCSCS
T ss_pred             CCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEc----------CCcceeEeCCCCe----EEEeccCCCCcCCC
Confidence            4578999999988752111 1111122333478888742          1267899999888    776521    2221


Q ss_pred             CccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC---CceEEEeeCC-eEEEEeCCCCcEEE
Q 016368          240 RFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN---GPAASTMNEE-ELYVVNEGKGRLSK  314 (390)
Q Consensus       240 ~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~---~~~~~~~~~g-~lyv~gg~~~~v~~  314 (390)
                      .    -.+++.. +|.+++..     ......||+.+++++...........   ..+++...++ .|++ |. .+.+++
T Consensus       147 ~----i~~i~~d~~g~lWigt-----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt-~~Gl~~  215 (758)
T 3ott_A          147 T----IYSIIRTKDNQIYVGT-----YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GT-EGYLFQ  215 (758)
T ss_dssp             C----EEEEEECTTCCEEEEE-----TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EE-EEEEEE
T ss_pred             e----EEEEEEcCCCCEEEEe-----CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-EE-CCCCeE
Confidence            1    1333333 67787752     23466899998888765431111111   1122221133 4565 43 347899


Q ss_pred             EECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          315 YDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       315 yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ||+.+.++.....++.. ...++..- +|.|+|-. . ..++.+|..+
T Consensus       216 ~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~  260 (758)
T 3ott_A          216 YFPSTGQIKQTEAFHNN-SIKSLALDGNGDLLAGT-D-NGLYVYHNDT  260 (758)
T ss_dssp             EETTTTEEEEEEEEEEE-EEEEEEECTTCCEEEEE-T-TEEEEECCTT
T ss_pred             EcCCCCeEEeccCCCCC-eEEEEEEcCCCCEEEEe-C-CceeEEecCC
Confidence            99999888766543321 11223332 56666643 2 3566666544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.63  E-value=4.1  Score=40.79  Aligned_cols=106  Identities=16%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCC--------CcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIP--------RRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK  233 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~  233 (390)
                      +.++.+|..|+  .|+.-...+..        ....+.++.+++||+...         ...+..+|.+|++.  .|+.-
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------dg~l~AlDa~TG~~--~W~~~  148 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------DGRLEAIDAKTGQR--AWSVD  148 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------TSEEEEEETTTCCE--EEEEE
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------CCEEEEEECCCCCE--eeeec
Confidence            46888998877  58764332210        112234567899988542         13688999988763  38754


Q ss_pred             cc-CCCCCccccceEEEEECCEEEEEcccCC--CCceeEEEeCCCCC--eEec
Q 016368          234 AQ-LKDGRFSREAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELDK--WKEM  281 (390)
Q Consensus       234 ~~-~~~~~~~r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~~--W~~~  281 (390)
                      .. -+.... ....+.++.++++|+-.+.+.  ....+..||.++++  |+.-
T Consensus       149 ~~~~~~~~~-~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          149 TRADHKRSY-TITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             CCSCTTSCC-BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcCCCCCCc-cccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            32 111000 001234557999887532111  12356789998874  8753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.58  E-value=1.4  Score=41.11  Aligned_cols=105  Identities=10%  Similarity=0.009  Sum_probs=56.5

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCC-eEecCCCC-CCCCCCceEEEeeCC-eEEEEeCCCCcEEEEECCCCceEEcccc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDK-WKEMPEGM-HAGWNGPAASTMNEE-ELYVVNEGKGRLSKYDADHDWWDEVIEL  328 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~-W~~~~~~~-~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W~~i~~~  328 (390)
                      ++.+++.++   ....+.+||+.+.. ...+.. . .......+++...++ .+++.|+.++.+.+||..+.. ..+..+
T Consensus       243 ~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~  317 (430)
T 2xyi_A          243 HESLFGSVA---DDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSF  317 (430)
T ss_dssp             CTTEEEEEE---TTSEEEEEETTCSCSSSCSEE-EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEE
T ss_pred             CCCEEEEEe---CCCeEEEEECCCCCCCcceeE-eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEe
Confidence            455665531   24557789988652 111111 1 011111122221234 488899999999999987532 122222


Q ss_pred             cccccce-eEEEE-CC-EEEEEeeCCceEEEEEcCC
Q 016368          329 AELKGAE-KITAA-RG-RVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       329 p~~r~~~-~~~~~-~g-~l~i~g~~~~~v~~~d~~~  361 (390)
                      ....... ++... ++ .+++.++.++.|.+||+..
T Consensus       318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            2222222 23333 33 5788877788999999976

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.55  E-value=2.7  Score=38.31  Aligned_cols=184  Identities=8%  Similarity=-0.019  Sum_probs=93.1

Q ss_pred             CCcEEEeCCCCcee-cCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWF-FGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~-~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+.+-. .+........-.+++.. ++++++.|+.+.        .+.+||..+....  .+.+..+.....
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~v~vw~~~~~~~~--~~~~~~~~~h~~  114 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG--------SLELYSTNEANNA--INSMARFSNHSS  114 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS--------CEEEECCSSTTSC--CCEEEECCCSSS
T ss_pred             CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC--------eEEEeeccccccc--ccchhhccCCcc
Confidence            46889998876432 22222222122222222 566666666553        6788998872100  222222221111


Q ss_pred             cccceEEEEE-C-CEEEEEcccCCCCceeEEEeCCCCC------eE-ecCCCCCCCCCCceEEEeeC-CeEEEEeCCCCc
Q 016368          242 SREAVEAVGF-K-GNLCMVNLKGNGAKDGAIYNVELDK------WK-EMPEGMHAGWNGPAASTMNE-EELYVVNEGKGR  311 (390)
Q Consensus       242 ~r~~~~~~~~-~-g~lyv~gg~g~~~~~~~~yd~~~~~------W~-~~~~~~~~~~~~~~~~~~~~-g~lyv~gg~~~~  311 (390)
                      .  ..+++.. + +.+++.|+   ....+.+||..+.+      -. .+...........+++...+ +.+++.++.++.
T Consensus       115 ~--v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  189 (416)
T 2pm9_A          115 S--VKTVKFNAKQDNVLASGG---NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF  189 (416)
T ss_dssp             C--CCEEEECSSSTTBEEEEC---SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred             c--eEEEEEcCCCCCEEEEEc---CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence            0  1233333 2 55555531   23457788887764      11 11110111112223333233 688899999999


Q ss_pred             EEEEECCCCceEEccccccc----ccce-eEEEE-CC-EEEEEeeCCc---eEEEEEcCCC
Q 016368          312 LSKYDADHDWWDEVIELAEL----KGAE-KITAA-RG-RVCAVCENGE---RIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~W~~i~~~p~~----r~~~-~~~~~-~g-~l~i~g~~~~---~v~~~d~~~~  362 (390)
                      +..||..+.+-...-.....    .... .+... ++ .+++.+..+.   .+.+||+.+.
T Consensus       190 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            99999987654333222210    2222 33333 33 5777766665   8999999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.51  E-value=4  Score=40.23  Aligned_cols=187  Identities=11%  Similarity=-0.060  Sum_probs=95.8

Q ss_pred             CCcEEEeCCC------CceecCC-CCCCCCcceEEE-EECCEEEEEeccCCCCCCCccCeEEEEECC-CCccccccEEcc
Q 016368          164 ASPLAFNPQS------NTWFFGP-QLSIPRRWCAMG-SVGGVVYVASGVGAHYRGDVARSMKKWDLK-SDREDWKWEKKA  234 (390)
Q Consensus       164 ~~~~~~dp~t------~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~~~~~W~~~~  234 (390)
                      ..++++|..+      ++.+.+. .-.  ......+ .-+|+..++...+.....-....++++|.. ++.. -..+.+.
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~~~~~l~  237 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-ADTRTLL  237 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-EEEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-cccEEeC
Confidence            5799999988      6655554 211  1111111 225554444333221000123579999998 5630 0033333


Q ss_pred             cCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC-------CceEEEeeCCeEEEEe
Q 016368          235 QLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN-------GPAASTMNEEELYVVN  306 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~-------~~~~~~~~~g~lyv~g  306 (390)
                      .-....    ....+. -+|++|+.+..+ +...+..+|+.+++++.+... .....       ...++..-++++++.+
T Consensus       238 ~~~~~~----~~~~~~spdg~l~~~~~~~-~~~~l~~~~~~~~~~~~l~~~-~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          238 GGPEEA----IAQAEWAPDGSLIVATDRT-GWWNLHRVDPATGAATQLCRR-EEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EETTBC----EEEEEECTTSCEEEEECTT-SSCEEEEECTTTCCEEESSCC-SSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             CCCCce----EcceEECCCCeEEEEECCC-CCeEEEEEECCCCceeecccc-cccccCccccccCceEeEeCCCEEEEEE
Confidence            211111    122332 378877775221 233677889888888877542 11110       1223321378888887


Q ss_pred             CCCC--cEEEEECCCCceEEcccccccccceeE-EEECCEEEEEeeCC---ceEEEEEcCCC
Q 016368          307 EGKG--RLSKYDADHDWWDEVIELAELKGAEKI-TAARGRVCAVCENG---ERIMVVDVLAS  362 (390)
Q Consensus       307 g~~~--~v~~yd~~~~~W~~i~~~p~~r~~~~~-~~~~g~l~i~g~~~---~~v~~~d~~~~  362 (390)
                      .. +  .++.+|..+...+.+..-  ......+ ..-++.++++....   ..++.+|+.+.
T Consensus       312 ~~-~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          312 GK-GAAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             BS-SSCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             Ec-CccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            66 5  678889887776665421  1111223 33466776665432   26788887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.43  E-value=2.1  Score=37.75  Aligned_cols=147  Identities=7%  Similarity=-0.051  Sum_probs=78.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-CCCCCccccceEEEE-ECCE-EEEEcccCCCCceeEEE
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~y  271 (390)
                      ++.+++.|+.+.        .+.+||..+...   -..+.. ......   ..+++. -+++ +++.|+   ....+.+|
T Consensus        22 ~~~~l~~~~~d~--------~v~iw~~~~~~~---~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~~w   84 (342)
T 1yfq_A           22 SKSLLLITSWDG--------SLTVYKFDIQAK---NVDLLQSLRYKHP---LLCCNFIDNTDLQIYVGT---VQGEILKV   84 (342)
T ss_dssp             GGTEEEEEETTS--------EEEEEEEETTTT---EEEEEEEEECSSC---EEEEEEEESSSEEEEEEE---TTSCEEEE
T ss_pred             CCCEEEEEcCCC--------eEEEEEeCCCCc---cccceeeeecCCc---eEEEEECCCCCcEEEEEc---CCCeEEEE
Confidence            455566665543        677888766540   011111 111111   123333 3677 555542   23457889


Q ss_pred             eC-CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc-------eEEcccccccccceeEEEECCE
Q 016368          272 NV-ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW-------WDEVIELAELKGAEKITAARGR  343 (390)
Q Consensus       272 d~-~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~-------W~~i~~~p~~r~~~~~~~~~g~  343 (390)
                      |. .+.+-..+.. ......-..+.. ..+.+++.++.++.+..||..+..       .+.+..+.......++....+.
T Consensus        85 d~~~~~~~~~~~~-~~~~~~v~~l~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           85 DLIGSPSFQALTN-NEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             CSSSSSSEEECBS-CCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             EeccCCceEeccc-cCCCCceEEEEe-CCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence            99 8876655433 111112223332 227788888889999999876400       2223333322223344444555


Q ss_pred             EEEEeeCCceEEEEEcCC
Q 016368          344 VCAVCENGERIMVVDVLA  361 (390)
Q Consensus       344 l~i~g~~~~~v~~~d~~~  361 (390)
                       ++++..+..+.+||+.+
T Consensus       163 -l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             -EEEEESTTEEEEEESSC
T ss_pred             -EEEEeCCCeEEEEECCc
Confidence             55657777999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=94.38  E-value=1.6  Score=43.76  Aligned_cols=119  Identities=16%  Similarity=0.246  Sum_probs=72.1

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-----ccccceEEEEECCEEEEEcccCCCC
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-----FSREAVEAVGFKGNLCMVNLKGNGA  265 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-----~~r~~~~~~~~~g~lyv~gg~g~~~  265 (390)
                      -++.++.||+....         ..+..+|..|++.  .|+.-...+...     +.....+.++.++++|+..    ..
T Consensus        73 P~v~~g~vyv~~~~---------~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~----~d  137 (677)
T 1kb0_A           73 PVVVDGIMYVSASW---------SVVHAIDTRTGNR--IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA----WD  137 (677)
T ss_dssp             CEEETTEEEEECGG---------GCEEEEETTTTEE--EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC----TT
T ss_pred             CEEECCEEEEECCC---------CeEEEEECCCCcE--EEEEcCCCCccccccccccCCCCCceEECCEEEEEc----CC
Confidence            45679999997542         3688999988763  487654432110     0000133556899999874    34


Q ss_pred             ceeEEEeCCCC--CeEecCC-CCCCC-CCCceEEEeeCCeEEEEeCC-----CCcEEEEECCCCc--eEEc
Q 016368          266 KDGAIYNVELD--KWKEMPE-GMHAG-WNGPAASTMNEEELYVVNEG-----KGRLSKYDADHDW--WDEV  325 (390)
Q Consensus       266 ~~~~~yd~~~~--~W~~~~~-~~~~~-~~~~~~~~~~~g~lyv~gg~-----~~~v~~yd~~~~~--W~~i  325 (390)
                      ..+.++|.+++  .|+.-.. ..... ......++ .++.+|+..+.     ++.++.||.++.+  |+.-
T Consensus       138 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            55788999876  5886432 11111 11223333 68888876542     5689999998765  7653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.36  E-value=0.57  Score=41.33  Aligned_cols=140  Identities=7%  Similarity=-0.010  Sum_probs=77.6

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++.||++....        ..+.+||+.++.    -+... .+..     ..+++. -+|++|+.     ....+.+||+
T Consensus        24 ~~~l~~~d~~~--------~~i~~~d~~~~~----~~~~~-~~~~-----~~~i~~~~dG~l~v~-----~~~~l~~~d~   80 (297)
T 3g4e_A           24 SNSLLFVDIPA--------KKVCRWDSFTKQ----VQRVT-MDAP-----VSSVALRQSGGYVAT-----IGTKFCALNW   80 (297)
T ss_dssp             TTEEEEEETTT--------TEEEEEETTTCC----EEEEE-CSSC-----EEEEEEBTTSSEEEE-----ETTEEEEEET
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCc----EEEEe-CCCc-----eEEEEECCCCCEEEE-----ECCeEEEEEC
Confidence            46788875433        478999999887    43332 2211     123333 36777765     3456789999


Q ss_pred             CCCCeEecCCCCCC-CCC-CceEEEeeCCeEEEEeC-----------CCCcEEEEECCCCceEEcccccccccceeEEEE
Q 016368          274 ELDKWKEMPEGMHA-GWN-GPAASTMNEEELYVVNE-----------GKGRLSKYDADHDWWDEVIELAELKGAEKITAA  340 (390)
Q Consensus       274 ~~~~W~~~~~~~~~-~~~-~~~~~~~~~g~lyv~gg-----------~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~  340 (390)
                      ++++++.+...... +.. ...+++..+|++|+...           ..+.++++|+.. +...+..  ......+++..
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~~pngi~~s  157 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVDISNGLDWS  157 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EESBEEEEEEC
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee--ccccccceEEc
Confidence            99888765431111 111 11233235788887542           123789998763 3333221  11222345444


Q ss_pred             -CC-EEEEEeeCCceEEEEEcC
Q 016368          341 -RG-RVCAVCENGERIMVVDVL  360 (390)
Q Consensus       341 -~g-~l~i~g~~~~~v~~~d~~  360 (390)
                       ++ .+|+.....+.|+++|+.
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEecCCCCcEEEEecc
Confidence             34 577775556678888763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.34  E-value=2.7  Score=40.47  Aligned_cols=141  Identities=6%  Similarity=0.047  Sum_probs=74.8

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++.++.|+.+.        .+.+||.....    -..+......     ..+++. -++++.+.++   ....+.+||.
T Consensus       396 dg~~l~~~~~d~--------~v~~~~~~~~~----~~~~~~~~~~-----v~~~~~s~d~~~l~~~~---~d~~v~~w~~  455 (577)
T 2ymu_A          396 DGQTIASASDDK--------TVKLWNRNGQL----LQTLTGHSSS-----VWGVAFSPDDQTIASAS---DDKTVKLWNR  455 (577)
T ss_dssp             TSSCEEEEETTS--------EEEEECTTCCE----EEEEECCSSC-----EEEEEECTTSSEEEEEE---TTSEEEEEET
T ss_pred             CCCEEEEEeCCC--------EEEEEeCCCCE----EEEecCCCCC-----eEEEEECCCCCEEEEEc---CCCEEEEEEC
Confidence            566666666543        67788854433    2222211111     122332 2566655531   2345678887


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEEEEeeCC
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVCAVCENG  351 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~  351 (390)
                      ....-..+..   ......+++...++++++.++.++.+..||.....   +..+....... +++.. +|++++.++.+
T Consensus       456 ~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          456 NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             TSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE---EEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE---EEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence            6544333322   11111233333588999999889999999965432   22222222222 23332 67777777777


Q ss_pred             ceEEEEEcCC
Q 016368          352 ERIMVVDVLA  361 (390)
Q Consensus       352 ~~v~~~d~~~  361 (390)
                      ..|.+||...
T Consensus       530 g~v~lwd~~~  539 (577)
T 2ymu_A          530 KTVKLWNRNG  539 (577)
T ss_dssp             SEEEEECTTS
T ss_pred             CEEEEEeCCC
Confidence            7899999643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.32  E-value=1.1  Score=40.04  Aligned_cols=138  Identities=12%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++.+|+++...        ..+++||+.++.    .+... .+..     ..+.+ .-+|++++..     ...+.+||+
T Consensus        60 ~~~l~~~d~~~--------~~i~~~d~~~~~----~~~~~-~~~~-----v~~i~~~~dg~l~v~~-----~~gl~~~d~  116 (326)
T 2ghs_A           60 SGTAWWFNILE--------RELHELHLASGR----KTVHA-LPFM-----GSALAKISDSKQLIAS-----DDGLFLRDT  116 (326)
T ss_dssp             TTEEEEEEGGG--------TEEEEEETTTTE----EEEEE-CSSC-----EEEEEEEETTEEEEEE-----TTEEEEEET
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCc----EEEEE-CCCc-----ceEEEEeCCCeEEEEE-----CCCEEEEEC
Confidence            36788876443        378999998876    54432 2221     12233 3578888763     334788999


Q ss_pred             CCCCeEecCCCCCCCCC---CceEEEeeCCeEEEEeCC------CCcEEEEECCCCceEEcccccccccceeEEEE-CC-
Q 016368          274 ELDKWKEMPEGMHAGWN---GPAASTMNEEELYVVNEG------KGRLSKYDADHDWWDEVIELAELKGAEKITAA-RG-  342 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~---~~~~~~~~~g~lyv~gg~------~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g-  342 (390)
                      .+++.+.+.. ......   ...+++..+|++|+....      .+.+++||  +.+...+..  ......+++.. +| 
T Consensus       117 ~~g~~~~~~~-~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          117 ATGVLTLHAE-LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGT  191 (326)
T ss_dssp             TTCCEEEEEC-SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSC
T ss_pred             CCCcEEEEee-CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCC
Confidence            9888876543 211111   112332357888875421      24799999  355544421  11122344443 44 


Q ss_pred             EEEEEeeCCceEEEEEcC
Q 016368          343 RVCAVCENGERIMVVDVL  360 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~  360 (390)
                      .+|+.......|+++|+.
T Consensus       192 ~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEEEEETTTCEEEEEEBC
T ss_pred             EEEEEECCCCEEEEEEcc
Confidence            577775556789999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=94.28  E-value=1.5  Score=40.59  Aligned_cols=108  Identities=6%  Similarity=0.037  Sum_probs=59.1

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL  331 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~  331 (390)
                      ++.+.+.|+   ....+.+||+.+.+-...-...+......+++...++.+++.|+.++.+..||..+......-.++..
T Consensus       181 ~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (437)
T 3gre_A          181 EKSLLVALT---NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH  257 (437)
T ss_dssp             SCEEEEEEE---TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred             CCCEEEEEe---CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence            456666542   23457789998765322111011111112223224788889999999999999987544332221211


Q ss_pred             ccceeEEEE-----CCEEEEEeeCCceEEEEEcCCC
Q 016368          332 KGAEKITAA-----RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       332 r~~~~~~~~-----~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .....+...     ++.+++.|+.+..|.+||+.+.
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            111122111     3556666666778999999765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=94.26  E-value=4.9  Score=40.16  Aligned_cols=184  Identities=10%  Similarity=-0.005  Sum_probs=95.3

Q ss_pred             CCcEEEeCCCCcee--cCCCCC-CCCcceEEEEE-CCE-EEEEeccCCCCCCCccCeEEEEECCC------C--cccccc
Q 016368          164 ASPLAFNPQSNTWF--FGPQLS-IPRRWCAMGSV-GGV-VYVASGVGAHYRGDVARSMKKWDLKS------D--REDWKW  230 (390)
Q Consensus       164 ~~~~~~dp~t~~W~--~~~~~~-~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t------~--~~~~~W  230 (390)
                      ..+++++..+.+..  .+-..+ .+......... +++ |++......    .....++++|..+      .  .    +
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~~l~~~d~~~~~~~~~~~~~----~  279 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC----DPVNRLWYCDLQQESNGITGILK----W  279 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS----SSCCEEEEEEGGGSSSSSCSSCC----C
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC----CCccEEEEEECcccccccCCccc----e
Confidence            45888898887643  111111 12222222222 454 444433221    1256899999876      4  5    7


Q ss_pred             EEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCC---CeEecCCCCCCCCCCceEEEee-CCeEEEEe
Q 016368          231 EKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELD---KWKEMPEGMHAGWNGPAASTMN-EEELYVVN  306 (390)
Q Consensus       231 ~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~g  306 (390)
                      +.+..-....    .......++.+|+.+..+.....+.++|+.+.   .|+.+...... ..-..+.. . ++.|++..
T Consensus       280 ~~l~~~~~~~----~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~lv~~~  353 (710)
T 2xdw_A          280 VKLIDNFEGE----YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVAC-VRSNFLVLCY  353 (710)
T ss_dssp             EEEECSSSSC----EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CEEEEEEE-ETTTEEEEEE
T ss_pred             EEeeCCCCcE----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC-CeEEEEEE-EcCCEEEEEE
Confidence            7665432221    12233346778888533222345778898775   58877552211 11122333 4 78888877


Q ss_pred             CCCC--cEEEEECCCCc-eEEcccccccccceeEEEE-CC-EEEEEeeC---CceEEEEEcCCCC
Q 016368          307 EGKG--RLSKYDADHDW-WDEVIELAELKGAEKITAA-RG-RVCAVCEN---GERIMVVDVLASP  363 (390)
Q Consensus       307 g~~~--~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~---~~~v~~~d~~~~~  363 (390)
                      ..++  .++++|..+++ ...+. .+ .....++... ++ .+++....   -..++.+|+.+..
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~-~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFP-LE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEC-CC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCCCCEEEecC-CC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6565  78999985554 34433 22 1111222222 33 55554333   2479999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.17  E-value=4.6  Score=40.18  Aligned_cols=146  Identities=10%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++++.+.|+.+.        .+.+||..+..    -...-.-....    -.+++. .+++..+.|+   ....+.++|.
T Consensus       441 ~g~~l~sgs~Dg--------~v~vwd~~~~~----~~~~~~~h~~~----v~~~~~s~~~~~l~s~s---~D~~i~iwd~  501 (694)
T 3dm0_A          441 DGQFALSGSWDG--------ELRLWDLAAGV----STRRFVGHTKD----VLSVAFSLDNRQIVSAS---RDRTIKLWNT  501 (694)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSSC----EEEEEECTTSSCEEEEE---TTSCEEEECT
T ss_pred             CCCEEEEEeCCC--------cEEEEECCCCc----ceeEEeCCCCC----EEEEEEeCCCCEEEEEe---CCCEEEEEEC
Confidence            567777777664        78899998875    22111111111    122332 2455444431   2345667887


Q ss_pred             CCCCeEecCCCCCCCCCCc--eEEEeeCC--eEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCEEEEE
Q 016368          274 ELDKWKEMPEGMHAGWNGP--AASTMNEE--ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAV  347 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~--~~~~~~~g--~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~  347 (390)
                      ....=..+.. ...+....  ++....++  .+++.|+.++.+..||..+..-..  .+..+..... +... ++++++.
T Consensus       502 ~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          502 LGECKYTISE-GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             TSCEEEEECS-STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCcceeecc-CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEE
Confidence            5543222222 11122211  22221233  467788889999999998754332  2222333233 3333 6778888


Q ss_pred             eeCCceEEEEEcCCC
Q 016368          348 CENGERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~~~v~~~d~~~~  362 (390)
                      |+.+..|.+||+.+.
T Consensus       579 g~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEG  593 (694)
T ss_dssp             EETTSBCEEEETTTT
T ss_pred             EeCCCeEEEEECCCC
Confidence            787889999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.10  E-value=1.4  Score=43.01  Aligned_cols=178  Identities=12%  Similarity=-0.013  Sum_probs=93.3

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      .+.+.++|+.+++-...  ++....-|..+..  +..+|+.+ .+        ..+.+||+.+.+    -+.+...+...
T Consensus       176 ~~~V~viD~~t~~v~~~--i~~g~~p~~v~~SpDGr~lyv~~-~d--------g~V~viD~~~~t----~~~v~~i~~G~  240 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVIG-RD--------GKVNMIDLWMKE----PTTVAEIKIGS  240 (567)
T ss_dssp             TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEE-TT--------SEEEEEETTSSS----CCEEEEEECCS
T ss_pred             CCeEEEEECCCCeEEEE--EeCCCCccceEECCCCCEEEEEc-CC--------CeEEEEECCCCC----CcEeEEEecCC
Confidence            46899999998855421  1222222333333  34678754 22        379999996223    23343333322


Q ss_pred             ccccceEEEEE-----CC-EEEEEcccCCCCceeEEEeCCCCCeEe-cCCC-CC--------CCCCCceEEEeeCCeEEE
Q 016368          241 FSREAVEAVGF-----KG-NLCMVNLKGNGAKDGAIYNVELDKWKE-MPEG-MH--------AGWNGPAASTMNEEELYV  304 (390)
Q Consensus       241 ~~r~~~~~~~~-----~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~-~~--------~~~~~~~~~~~~~g~lyv  304 (390)
                      .   ...+++.     +| .+|+.   ++....+.++|..+.+=.. ++.. ++        .++. ..++...++..++
T Consensus       241 ~---P~~ia~s~~~~pDGk~l~v~---n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv-a~i~~s~~~~~~v  313 (567)
T 1qks_A          241 E---ARSIETSKMEGWEDKYAIAG---AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV-AAILASHYRPEFI  313 (567)
T ss_dssp             E---EEEEEECCSTTCTTTEEEEE---EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE-EEEEECSSSSEEE
T ss_pred             C---CceeEEccccCCCCCEEEEE---EccCCeEEEEECCCCcEEEEEeccccccccccccCCCce-EEEEEcCCCCEEE
Confidence            2   1334444     56 46665   2234566789977654222 2210 11        1111 1222223444444


Q ss_pred             Ee-CCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceEEEEEcCCC
Q 016368          305 VN-EGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       305 ~g-g~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      +. ...+.++..|........+..++..+..+.+..- +|+ +|+.....+.|.++|..+.
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            43 4557999999987766666655555555544433 455 4444344568889998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.06  E-value=3.5  Score=40.25  Aligned_cols=220  Identities=7%  Similarity=-0.046  Sum_probs=106.3

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCC--CCce
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQ--SNTW  176 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~--t~~W  176 (390)
                      ..+.++|+.+++-...-+...  ..+               ..+.. +++.+|+++.       .+.+.+||+.  +.+ 
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~--~p~---------------~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~-  231 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGY--AVH---------------ISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPT-  231 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSS--CEE---------------EEEECTTSCEEEEEET-------TSEEEEEETTSSSCC-
T ss_pred             CeEEEEECCCCeEEEEEeCCC--Ccc---------------ceEECCCCCEEEEEcC-------CCeEEEEECCCCCCc-
Confidence            468889998875543111211  111               22223 4555555532       2479999985  443 


Q ss_pred             ecCCCCCCCCcceEEEEE-----CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-ccc--CCCC-----Ccc
Q 016368          177 FFGPQLSIPRRWCAMGSV-----GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQ--LKDG-----RFS  242 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~--~~~~-----~~~  242 (390)
                       .+...+....-..+++.     +| .+|+..-..        ..+.++|..|.+    =.. ++.  ++..     ..+
T Consensus       232 -~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~--------~~v~ViD~~t~~----~~~~i~~~~~~~~~~~~~p~~  298 (567)
T 1qks_A          232 -TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLE----PKKIQSTRGMTYDEQEYHPEP  298 (567)
T ss_dssp             -EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCC----EEEEEECCEECTTTCCEESCC
T ss_pred             -EeEEEecCCCCceeEEccccCCCCCEEEEEEccC--------CeEEEEECCCCc----EEEEEeccccccccccccCCC
Confidence             22222222222334443     45 567664332        477889977755    111 211  1100     000


Q ss_pred             ccceEEE-EECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeE-EEEeCCCCcEEEEECCCC
Q 016368          243 REAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEEL-YVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~l-yv~gg~~~~v~~yd~~~~  320 (390)
                      |. .+++ ..++..+++.-  .....+.+.|........+.. .+.++..+......+|+. |+....++.+.++|.++.
T Consensus       299 rv-a~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          299 RV-AAILASHYRPEFIVNV--KETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             CE-EEEEECSSSSEEEEEE--TTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ce-EEEEEcCCCCEEEEEe--cCCCeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            11 1222 12334444421  123456677776655433333 333333334443245554 444545678999999987


Q ss_pred             ceEE---c-ccccccccceeEEEE-CCEEEEEeeC-CceEEEEEcCC
Q 016368          321 WWDE---V-IELAELKGAEKITAA-RGRVCAVCEN-GERIMVVDVLA  361 (390)
Q Consensus       321 ~W~~---i-~~~p~~r~~~~~~~~-~g~l~i~g~~-~~~v~~~d~~~  361 (390)
                      +=..   + ...|.+.....+..- ++.+|+.+.. .+.|.++|...
T Consensus       375 kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            5332   2 233433222223222 4678877643 36788888765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.02  E-value=3.2  Score=37.13  Aligned_cols=161  Identities=10%  Similarity=0.145  Sum_probs=81.5

Q ss_pred             CCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC-CCCccccceEEE
Q 016368          172 QSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK-DGRFSREAVEAV  249 (390)
Q Consensus       172 ~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~-~~~~~r~~~~~~  249 (390)
                      ...+|+.+.. +......++... .+.+|++|. ..        .++..+-.-.+    |+.+.... ....  ...+++
T Consensus        23 ~g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~-~g--------~i~~s~DgG~t----W~~~~~~~~~~~~--~~~~i~   86 (327)
T 2xbg_A           23 DYNPWEAIQL-PTTATILDMSFIDRHHGWLVGV-NA--------TLMETRDGGQT----WEPRTLVLDHSDY--RFNSVS   86 (327)
T ss_dssp             SSCCEEEEEC-SCSSCEEEEEESSSSCEEEEET-TT--------EEEEESSTTSS----CEECCCCCSCCCC--EEEEEE
T ss_pred             CCCCceEeec-CCCCcEEEEEECCCCcEEEEcC-CC--------eEEEeCCCCCC----CeECCCCCCCCCc--cEEEEE
Confidence            3457877652 222222333333 467888653 21        23222222346    99886421 1111  024455


Q ss_pred             EECCEEEEEcccCCCCceeEEEeCC--CCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368          250 GFKGNLCMVNLKGNGAKDGAIYNVE--LDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE  327 (390)
Q Consensus       250 ~~~g~lyv~gg~g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~  327 (390)
                      ..++.+|++|-.      ..+|-..  -.+|+.+......+.....++..-++.+|+.+. .+.+++-+-...+|+++..
T Consensus        87 ~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~  159 (327)
T 2xbg_A           87 FQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQ  159 (327)
T ss_dssp             EETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEEC
T ss_pred             ecCCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeec
Confidence            567788888411      2344333  469999875221211122333225688888775 5567665545678999864


Q ss_pred             ccccccceeEEEE-CCEEEEEeeCCceEEEE
Q 016368          328 LAELKGAEKITAA-RGRVCAVCENGERIMVV  357 (390)
Q Consensus       328 ~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~  357 (390)
                      .. ....+.+... ++.+++++..+ .++.-
T Consensus       160 ~~-~~~~~~~~~~~~~~~~~~g~~G-~~~~S  188 (327)
T 2xbg_A          160 EA-IGVMRNLNRSPSGEYVAVSSRG-SFYST  188 (327)
T ss_dssp             SC-CCCEEEEEECTTSCEEEEETTS-SEEEE
T ss_pred             CC-CcceEEEEEcCCCcEEEEECCC-cEEEE
Confidence            22 2223344433 56777775433 44443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.01  E-value=0.018  Score=56.70  Aligned_cols=31  Identities=10%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CCCcHHHHHHHHhcC-C---chhhHhhhHhHHHhh
Q 016368           35 PGLPNHLADRCLSSL-P---PALLFSVCHSWRRLL   65 (390)
Q Consensus        35 ~~LP~dl~~~iL~rL-P---l~~~r~Vck~W~~l~   65 (390)
                      ..||||++.+||.+| |   +.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            469999999999999 6   788889999999884

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.00  E-value=3.2  Score=37.01  Aligned_cols=164  Identities=10%  Similarity=0.065  Sum_probs=80.1

Q ss_pred             CcEEEeCCCCceecCCCCCC--CCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          165 SPLAFNPQSNTWFFGPQLSI--PRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      .+++||+.+++.+.+.....  +........+  +|++|+.......  ......+++||  +++    .+.+..-. . 
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~--~~~~~~l~~~~--~g~----~~~~~~~~-~-  179 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVA--KGK----VTKLFADI-S-  179 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEE--TTE----EEEEEEEE-S-
T ss_pred             CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC--CCCceEEEEEe--CCc----EEEeeCCC-c-
Confidence            58999999988776543321  1112222222  6778774322110  12334788888  455    44432110 0 


Q ss_pred             ccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCC--CC-C------eEecCCCCCCCCCCceEEEeeCCeEEEEeCCC
Q 016368          241 FSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVE--LD-K------WKEMPEGMHAGWNGPAASTMNEEELYVVNEGK  309 (390)
Q Consensus       241 ~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~  309 (390)
                      .   ..+.+.. +| .+|+..   .....+.+||..  ++ +      +.....   .......++...+|.||+.....
T Consensus       180 ~---~~~i~~s~dg~~lyv~~---~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          180 I---PNSICFSPDGTTGYFVD---TKVNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             S---EEEEEECTTSCEEEEEE---TTTCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEETT
T ss_pred             c---cCCeEEcCCCCEEEEEE---CCCCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeCC
Confidence            1   1233332 45 577772   123467788875  43 2      222211   01111233433468888876555


Q ss_pred             CcEEEEECCCCceEEcccccccccceeEEEE---CCEEEEEee
Q 016368          310 GRLSKYDADHDWWDEVIELAELKGAEKITAA---RGRVCAVCE  349 (390)
Q Consensus       310 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~  349 (390)
                      +.+.+||++...-..+. ++. ....+++..   ++.|||...
T Consensus       251 ~~v~~~d~~g~~~~~i~-~~~-~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          251 GAVDRYDTDGNHIARYE-VPG-KQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             TEEEEECTTCCEEEEEE-CSC-SBEEEEEEESTTSCEEEEEEB
T ss_pred             CEEEEECCCCCEEEEEE-CCC-CCcEEEEEecCCCCEEEEEec
Confidence            68999999644333332 222 122233332   246777653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.00  E-value=1.2  Score=43.26  Aligned_cols=130  Identities=15%  Similarity=0.045  Sum_probs=72.1

Q ss_pred             EEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEccc-CCCCceeEEEeCCCCCeEecCCCCCCCCCCceEE
Q 016368          217 KKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAAS  295 (390)
Q Consensus       217 ~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  295 (390)
                      .+||..++.    -+.+...+.  .    .....-+|+..+++.. +.+...+.++|+++++++.+.. ....  ....+
T Consensus       135 ~l~d~~~g~----~~~l~~~~~--~----~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~--~~~~~  201 (582)
T 3o4h_A          135 ALYALDGGG----LRELARLPG--F----GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS-GEGS--FSSAS  201 (582)
T ss_dssp             EEEEEETTE----EEEEEEESS--C----EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC-SSCE--EEEEE
T ss_pred             eEEEccCCc----EEEeecCCC--c----eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec-CCCc--cccce
Confidence            388998887    666554332  1    2233356665554322 1112457789999998887754 2111  12222


Q ss_pred             EeeCCeEEEEeCCCC--cEEEEECCCCceEEccccccccccee-------EEEECCEEEEEeeCCceEEEEEc
Q 016368          296 TMNEEELYVVNEGKG--RLSKYDADHDWWDEVIELAELKGAEK-------ITAARGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       296 ~~~~g~lyv~gg~~~--~v~~yd~~~~~W~~i~~~p~~r~~~~-------~~~~~g~l~i~g~~~~~v~~~d~  359 (390)
                      ...||+.++....++  .+++||.++.+...+......-....       ...-+|++++.+..+..+.+|++
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            236777666655566  89999999888773322111000000       02235677776655667777776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=93.93  E-value=1.2  Score=39.13  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             eEEEEECCCCccccccEEcccCCCCC-ccccceEEEE-ECC-EEEEEcccCCCCceeEEEeCCCCCeEe-cCCCCCC--C
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGR-FSREAVEAVG-FKG-NLCMVNLKGNGAKDGAIYNVELDKWKE-MPEGMHA--G  288 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~-~~r~~~~~~~-~~g-~lyv~gg~g~~~~~~~~yd~~~~~W~~-~~~~~~~--~  288 (390)
                      .+.+||..+.+    -...-..+... .   ...++. -+| .+|+.+   .....+.++|+.+.+-.. +....+.  .
T Consensus        12 ~v~~~d~~~~~----~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~---~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B           12 KLVVIDTEKMA----VDKVITIADAGPT---PMVPMVAPGGRIAYATV---NKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTTE----EEEEEECTTCTTC---CCCEEECTTSSEEEEEE---TTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEECCCCc----EEEEEEcCCCCCC---ccceEEcCCCCEEEEEe---CCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            78899998876    33222222210 0   122332 355 577763   124567899998876432 2210100  0


Q ss_pred             CCCceEEEeeCC-eEEEEeC-----------CCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceE
Q 016368          289 WNGPAASTMNEE-ELYVVNE-----------GKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERI  354 (390)
Q Consensus       289 ~~~~~~~~~~~g-~lyv~gg-----------~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v  354 (390)
                      .....++...+| .||+...           .++.+.+||.++.+....-..  ......+... +|+ ||+.   +..+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~---~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL---GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE---SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe---CCeE
Confidence            012233332456 5666531           357999999987654432222  2222334433 444 5554   3578


Q ss_pred             EEEEcCCC
Q 016368          355 MVVDVLAS  362 (390)
Q Consensus       355 ~~~d~~~~  362 (390)
                      .++|+.+.
T Consensus       157 ~~~d~~~~  164 (337)
T 1pby_B          157 HVMDPEAG  164 (337)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            88887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.90  E-value=3.3  Score=40.83  Aligned_cols=164  Identities=10%  Similarity=-0.054  Sum_probs=87.7

Q ss_pred             cCeEEEEEeecCCCCC-CCCCcEEEeCC-CC---ceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEE
Q 016368          146 RNNLVLIAATTPHFLP-ALASPLAFNPQ-SN---TWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKW  219 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~-~~~~~~~~dp~-t~---~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~y  219 (390)
                      +++.+++......... ...+++++|.. ++   +.+.+..-. .......+.. +|++|+.+..+.      ...++++
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~------~~~l~~~  270 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTG------WWNLHRV  270 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTS------SCEEEEE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCC------CeEEEEE
Confidence            4555555543321100 22479999998 56   333332210 1111222222 677777665432      2478999


Q ss_pred             ECCCCccccccEEcccCCCCC----ccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368          220 DLKSDREDWKWEKKAQLKDGR----FSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA  294 (390)
Q Consensus       220 d~~t~~~~~~W~~~~~~~~~~----~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  294 (390)
                      |+.++.    ++.+.......    +.......+.. ++++++.+..  +....+.+|..+++.+.+.. . ... ...+
T Consensus       271 ~~~~~~----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~~~~~~~~l~~-~-~~~-~~~~  341 (662)
T 3azo_A          271 DPATGA----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK--GAAVLGILDPESGELVDAAG-P-WTE-WAAT  341 (662)
T ss_dssp             CTTTCC----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS--SSCEEEEEETTTTEEEECCS-S-CCE-EEEE
T ss_pred             ECCCCc----eeecccccccccCccccccCceEeEeCCCEEEEEEEc--CccEEEEEECCCCcEEEecC-C-CCe-EEEE
Confidence            998888    88775532211    10001223333 6777776432  44556677988887777654 1 111 1122


Q ss_pred             -EEeeCCeEEEEeCCCC---cEEEEECCCCceEEcc
Q 016368          295 -STMNEEELYVVNEGKG---RLSKYDADHDWWDEVI  326 (390)
Q Consensus       295 -~~~~~g~lyv~gg~~~---~v~~yd~~~~~W~~i~  326 (390)
                       .. -++.+++..+...   .++.+|..+.+.+.+.
T Consensus       342 ~s~-~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          342 LTV-SGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             EEE-ETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             Eec-CCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence             22 4566666554332   7899999888877764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.90  E-value=2.9  Score=36.29  Aligned_cols=93  Identities=15%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeC-CCCcEEEEECCCCceEEccccccccccee-EEEE-CC
Q 016368          266 KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNE-GKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RG  342 (390)
Q Consensus       266 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg-~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g  342 (390)
                      ..+.++|..+..-..... ..... ........++.+++..| .++.+..||..+.+  .+..+..+..... ++.. +|
T Consensus       221 ~~i~lwd~~~~~~~~~~~-~~~~v-~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVD-AHSQV-CSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDG  296 (318)
T ss_dssp             CEEEEEETTTCCEEEEEE-CSSCE-EEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTS
T ss_pred             CEEEEEeccccccccccc-ceeee-eeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCC
Confidence            456678887765443322 11111 11122223445554444 56799999987643  4444444333333 3333 67


Q ss_pred             EEEEEeeCCceEEEEEcCCC
Q 016368          343 RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++++-|+.++.|.+||+.+.
T Consensus       297 ~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          297 ATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEecCCeEEEEECCCC
Confidence            77777777889999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.90  E-value=2.7  Score=36.93  Aligned_cols=161  Identities=15%  Similarity=0.163  Sum_probs=79.0

Q ss_pred             CCcEEEeCCCC-ceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSN-TWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~-~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..++.||+... .|+.-.+  ... ..+.+. -++.||+..           ..+.+||.....   .|+.......  .
T Consensus       157 ~~l~~~d~~g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t-----------~~l~~~d~~g~~---~~~~~~~~~~--~  217 (330)
T 3hxj_A          157 NYLYAINPDGTEKWRFKTN--DAI-TSAASIGKDGTIYFGS-----------DKVYAINPDGTE---KWNFYAGYWT--V  217 (330)
T ss_dssp             SEEEEECTTSCEEEEEECS--SCC-CSCCEECTTCCEEEES-----------SSEEEECTTSCE---EEEECCSSCC--C
T ss_pred             CEEEEECCCCCEeEEEecC--CCc-eeeeEEcCCCEEEEEe-----------CEEEEECCCCcE---EEEEccCCcc--e
Confidence            46888888722 3543211  111 122233 267777753           367888843222   2665432211  1


Q ss_pred             cccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCC-CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELD-KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                          .+.+.. +|.+|+..    ......+||.... .|+....   .... ...+...+|.||+. ..++.+++||+..
T Consensus       218 ----~~~~~~~~g~l~v~t----~~~gl~~~~~~g~~~~~~~~~---~~~~-~~~~~~~~g~l~v~-t~~ggl~~~d~~g  284 (330)
T 3hxj_A          218 ----TRPAISEDGTIYVTS----LDGHLYAINPDGTEKWRFKTG---KRIE-SSPVIGNTDTIYFG-SYDGHLYAINPDG  284 (330)
T ss_dssp             ----SCCEECTTSCEEEEE----TTTEEEEECTTSCEEEEEECS---SCCC-SCCEECTTSCEEEE-CTTCEEEEECTTS
T ss_pred             ----eceEECCCCeEEEEc----CCCeEEEECCCCCEeEEeeCC---CCcc-ccceEcCCCeEEEe-cCCCCEEEECCCC
Confidence                223333 55788763    2345667886544 3554322   1111 12333136777754 4466899999753


Q ss_pred             C-ceEEcccccccccceeEEE-ECCEEEEEeeCCceEEEEEcC
Q 016368          320 D-WWDEVIELAELKGAEKITA-ARGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       320 ~-~W~~i~~~p~~r~~~~~~~-~~g~l~i~g~~~~~v~~~d~~  360 (390)
                      . .|..-  ++.. ...+++. .+|+||+- ..+..+.+....
T Consensus       285 ~~~~~~~--~~~~-~~~~~~~d~~g~l~~g-t~~G~~~~~~~~  323 (330)
T 3hxj_A          285 TEKWNFE--TGSW-IIATPVIDENGTIYFG-TRNGKFYALFNL  323 (330)
T ss_dssp             CEEEEEE--CSSC-CCSCCEECTTCCEEEE-CTTSCEEEEEC-
T ss_pred             cEEEEEE--cCCc-cccceEEcCCCEEEEE-cCCCeEEEEecc
Confidence            3 35432  2211 2223444 57888885 444455554443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=93.89  E-value=3.3  Score=36.97  Aligned_cols=146  Identities=10%  Similarity=0.039  Sum_probs=83.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      +++||+.--        ....+.++++.+... ..+.....+..+      .+.++  .++.||+.-   .....+++++
T Consensus        46 ~~~lyw~D~--------~~~~I~r~~~~g~~~-~~~~~~~~l~~p------~glavd~~~g~ly~~d---~~~~~I~~~~  107 (318)
T 3sov_A           46 HGLIYWSDV--------SEEAIKRTEFNKTES-VQNVVVSGLLSP------DGLACDWLGEKLYWTD---SETNRIEVSN  107 (318)
T ss_dssp             GTEEEEEET--------TTTEEEEEETTSSSC-CCEEEEECCSCC------CEEEEETTTTEEEEEE---TTTTEEEEEE
T ss_pred             CCEEEEEEC--------CCCcEEEEEccCCCc-eEEEEcCCCCCc------cEEEEEcCCCeEEEEE---CCCCEEEEEE
Confidence            588998732        335788899876530 002212222221      33444  488999982   2345678899


Q ss_pred             CCCCCeEecC-CCCCCCCCCceEEE-eeCCeEEEEeC-CCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEE
Q 016368          273 VELDKWKEMP-EGMHAGWNGPAAST-MNEEELYVVNE-GKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAV  347 (390)
Q Consensus       273 ~~~~~W~~~~-~~~~~~~~~~~~~~-~~~g~lyv~gg-~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~  347 (390)
                      +....-+.+. .....+   ..+++ ..+|.||+... ..+.|+++++....=+.+.. .......++++-  +++||+.
T Consensus       108 ~dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             TTSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEE
Confidence            8765433332 112111   23343 13689999884 35699999988543333321 112233456664  7889998


Q ss_pred             eeCCceEEEEEcCCC
Q 016368          348 CENGERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~~~v~~~d~~~~  362 (390)
                      =.....|+.+|....
T Consensus       184 D~~~~~I~~~d~dG~  198 (318)
T 3sov_A          184 DAKLNFIHKSNLDGT  198 (318)
T ss_dssp             ETTTTEEEEEETTSC
T ss_pred             ECCCCEEEEEcCCCC
Confidence            555668888887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=93.89  E-value=4.3  Score=38.27  Aligned_cols=198  Identities=8%  Similarity=0.034  Sum_probs=95.4

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCC----ceecCCC---C----CCCCcceEEEE-ECCEEEEEeccCCCCCCCcc
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSN----TWFFGPQ---L----SIPRRWCAMGS-VGGVVYVASGVGAHYRGDVA  213 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~----~W~~~~~---~----~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~  213 (390)
                      ..+.+++.|.      ..+.++++|..++    +-.+.-.   +    ...+ -|.... -++ |||..-.+..  +...
T Consensus        94 ~r~~l~v~~l------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~--g~~~  163 (462)
T 2ece_A           94 ERRFLIVPGL------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEE--GEGP  163 (462)
T ss_dssp             CSCEEEEEBT------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETT--SCSC
T ss_pred             cCCEEEEccC------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcC--CCCC
Confidence            3455555553      3478999998776    2222110   1    1112 233333 356 7774322211  3455


Q ss_pred             CeEEEEECCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEccc--------C--------CCCceeEEEeCCCC
Q 016368          214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLK--------G--------NGAKDGAIYNVELD  276 (390)
Q Consensus       214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~--------g--------~~~~~~~~yd~~~~  276 (390)
                      ..+.++|.+|.+..-+|.. ...+.. +   ++... .-++++++..-.        |        ..+..+.+||..+.
T Consensus       164 g~v~vlD~~T~~v~~~~~~-~~~~~~-~---~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEI-DRGDQY-L---AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CEEEEECTTTCCEEEECCS-BCTTCC-C---CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CeEEEEECCCCeEEEEEcc-CCCCcc-c---cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            7899999998763222431 111111 1   12222 235555554310        0        12567789999875


Q ss_pred             CeEecCCCCCCCCC--Cce-E-EE--eeCCeEEEEeC-----CCCcEEEEECCCCceEEcccc--cc-------------
Q 016368          277 KWKEMPEGMHAGWN--GPA-A-ST--MNEEELYVVNE-----GKGRLSKYDADHDWWDEVIEL--AE-------------  330 (390)
Q Consensus       277 ~W~~~~~~~~~~~~--~~~-~-~~--~~~g~lyv~gg-----~~~~v~~yd~~~~~W~~i~~~--p~-------------  330 (390)
                      +  .+.. .+.+..  .+. + .+  .-+..+||...     -++.+++|..+...|..+..+  +.             
T Consensus       239 k--~~~t-I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          239 K--RIHS-LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             E--EEEE-EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             c--EeeE-EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            3  2222 222211  111 1 10  11345666665     555666554444677655421  11             


Q ss_pred             ----cccceeEEEE-CC-EEEEEeeCCceEEEEEcCC
Q 016368          331 ----LKGAEKITAA-RG-RVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       331 ----~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~  361 (390)
                          ......+... +| .||+-..+.+.|.+||+..
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                0112233333 44 5777656677999999864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.88  E-value=0.94  Score=41.15  Aligned_cols=181  Identities=14%  Similarity=-0.017  Sum_probs=92.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~  240 (390)
                      ..++++|+.+++.+.+...  ..........  +++ |++... ...  ......++++|..+..    ++.+.. ....
T Consensus       168 ~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~~~--~~~~~~l~~~d~~~~~----~~~l~~-~~~~  237 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-GPH--DLVDARMWLVNEDGSN----VRKIKE-HAEG  237 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-SCS--SSCSCCCEEEETTSCC----CEESSC-CCTT
T ss_pred             ceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-CCC--CCCCceEEEEECCCCc----eeEeec-cCCC
Confidence            4688899988877655421  1212222222  344 544432 210  1123578999998887    777655 1111


Q ss_pred             ccccceEEEE-ECCE-EEEEcccCCCCce--eEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeC--------
Q 016368          241 FSREAVEAVG-FKGN-LCMVNLKGNGAKD--GAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNE--------  307 (390)
Q Consensus       241 ~~r~~~~~~~-~~g~-lyv~gg~g~~~~~--~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg--------  307 (390)
                      ..  ....+. -+|+ |++.+ ...+...  +.++|+.+++...+.. .+. .   ...... +|+++++.+        
T Consensus       238 ~~--~~~~~~spdg~~l~~~~-~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~---~~~~s~~dg~~l~~~~~~~p~~~~  309 (396)
T 3c5m_A          238 ES--CTHEFWIPDGSAMAYVS-YFKGQTDRVIYKANPETLENEEVMV-MPP-C---SHLMSNFDGSLMVGDGCDAPVDVA  309 (396)
T ss_dssp             EE--EEEEEECTTSSCEEEEE-EETTTCCEEEEEECTTTCCEEEEEE-CCS-E---EEEEECSSSSEEEEEECCC-----
T ss_pred             cc--ccceEECCCCCEEEEEe-cCCCCccceEEEEECCCCCeEEeee-CCC-C---CCCccCCCCceEEEecCCcceeec
Confidence            10  112222 2565 44442 1112233  7889998887766543 221 1   122225 888777643        


Q ss_pred             --------CCCcEEEEECCCCceEEcccccccc---------cceeEE-EECC-EEEEEeeC--CceEEEEEcCCC
Q 016368          308 --------GKGRLSKYDADHDWWDEVIELAELK---------GAEKIT-AARG-RVCAVCEN--GERIMVVDVLAS  362 (390)
Q Consensus       308 --------~~~~v~~yd~~~~~W~~i~~~p~~r---------~~~~~~-~~~g-~l~i~g~~--~~~v~~~d~~~~  362 (390)
                              ....++++|..+.....+...+..-         ...... ..+| .|++.+..  ...++.+|+.+.
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             -----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             cccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                    2348999999887766554322100         011122 2244 45555432  236788887765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.87  E-value=3.7  Score=37.33  Aligned_cols=181  Identities=7%  Similarity=0.021  Sum_probs=94.9

Q ss_pred             CCcEEEeCCCCceecCC--CCCCCC-cceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC
Q 016368          164 ASPLAFNPQSNTWFFGP--QLSIPR-RWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK  237 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~--~~~~~r-~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~  237 (390)
                      ..+.+||..+++-...-  ..+... .......+   ++.+++.|+.+.        .+.+||.......  -..+..- 
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~~~~~~--~~~~~~h-  248 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLRITSRA--VRTYHGH-  248 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETTTTCCC--CEEECCC-
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECCCCCcc--eEEECCc-
Confidence            46888998887543221  111111 11112222   567888887765        6888998643200  1222111 


Q ss_pred             CCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEec-CCC--CCCC-C-CCceEEEeeCCeEEEEeCCCCc
Q 016368          238 DGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEM-PEG--MHAG-W-NGPAASTMNEEELYVVNEGKGR  311 (390)
Q Consensus       238 ~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~-~~~--~~~~-~-~~~~~~~~~~g~lyv~gg~~~~  311 (390)
                      ...    -.+++. -+++.++.|+   ....+.+||+.++.-... ...  .... . ...+++...+|++++.|+.++.
T Consensus       249 ~~~----v~~v~~~p~~~~l~s~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          249 EGD----INSVKFFPDGQRFGTGS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             SSC----CCEEEECTTSSEEEEEC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             CCC----eEEEEEecCCCeEEEEc---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            111    122333 2566666641   234567899887643221 110  0011 1 1223333368999999999999


Q ss_pred             EEEEECCCCceEE-cccccc-ccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          312 LSKYDADHDWWDE-VIELAE-LKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       312 v~~yd~~~~~W~~-i~~~p~-~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +..||..+.+-.. +..+.. ...... +... +|..++.|+.+..+.+||+...
T Consensus       322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999987655332 222211 122222 3332 6777777777889999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.78  E-value=3.4  Score=36.55  Aligned_cols=170  Identities=8%  Similarity=-0.011  Sum_probs=81.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+++-...  +...........+  ++.+++.|+.+.        .+.+||.....    -..+..-...  
T Consensus        87 ~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~--------~i~vwd~~~~~----~~~~~~h~~~--  150 (319)
T 3frx_A           87 KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK--------TIKVWTIKGQC----LATLLGHNDW--  150 (319)
T ss_dssp             SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS--------CEEEEETTSCE----EEEECCCSSC--
T ss_pred             CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCe----EEEEeccCCc--
Confidence            4688899988753211  1111111112222  566777776654        67788886554    3222211110  


Q ss_pred             cccceEEEEE-------CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEE
Q 016368          242 SREAVEAVGF-------KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSK  314 (390)
Q Consensus       242 ~r~~~~~~~~-------~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~  314 (390)
                         ...+...       ++..++.|+   ....+.+||+.+.+-...-.  .......+++...+|++++.|+.++.+..
T Consensus       151 ---v~~~~~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~i~i  222 (319)
T 3frx_A          151 ---VSQVRVVPNEKADDDSVTIISAG---NDKMVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIML  222 (319)
T ss_dssp             ---EEEEEECCC------CCEEEEEE---TTSCEEEEETTTTEEEEEEC--CCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             ---EEEEEEccCCCCCCCccEEEEEe---CCCEEEEEECCcchhheeec--CCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence               0112211       222344421   23456788887654322111  11111122332357889999999999999


Q ss_pred             EECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368          315 YDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       315 yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~  360 (390)
                      ||..+.+=  +..+........++.. ++.+++.+. ...+.+|++.
T Consensus       223 wd~~~~~~--~~~~~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~  266 (319)
T 3frx_A          223 WNLAAKKA--MYTLSAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLD  266 (319)
T ss_dssp             EETTTTEE--EEEEECCSCEEEEEECSSSSEEEEEE-TTEEEEEEET
T ss_pred             EECCCCcE--EEEecCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeC
Confidence            99987542  2222222222233333 455544433 3446666554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.63  E-value=6.2  Score=39.14  Aligned_cols=142  Identities=8%  Similarity=0.032  Sum_probs=71.2

Q ss_pred             cCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCE-EEEEccc-CCCCceeEEEeCCCC-CeEecCCCCCCC
Q 016368          213 ARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGN-LCMVNLK-GNGAKDGAIYNVELD-KWKEMPEGMHAG  288 (390)
Q Consensus       213 ~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~-lyv~gg~-g~~~~~~~~yd~~~~-~W~~~~~~~~~~  288 (390)
                      ...+++||..++.    -..+........  ....++. -+|+ +++.... +.....+.++|+.+. ....+.......
T Consensus       234 ~~~l~~~d~~~~~----~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          234 HVTVGIYHLATGK----TVYLQTGEPKEK--FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH  307 (706)
T ss_dssp             EEEEEEEETTTTE----EEECCCCSCTTC--EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred             eeEEEEEECCCCc----eEeeccCCCCce--eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence            3578999998877    554442211111  0112222 3665 4443211 111235678999887 665543211111


Q ss_pred             CC--CceEEEee--CCeEEEEeCCCC--cEEEEECCCCceEEcccccccccceeEEEE---CCEEEEEeeCC----ceEE
Q 016368          289 WN--GPAASTMN--EEELYVVNEGKG--RLSKYDADHDWWDEVIELAELKGAEKITAA---RGRVCAVCENG----ERIM  355 (390)
Q Consensus       289 ~~--~~~~~~~~--~g~lyv~gg~~~--~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---~g~l~i~g~~~----~~v~  355 (390)
                      ..  ...+....  +|++++.+..++  .+|.+|........+..-.  .....+..+   +..|++.+..+    ..++
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            11  11223225  888776665554  7888887666666654211  111222222   34576665443    3788


Q ss_pred             EEEcCCC
Q 016368          356 VVDVLAS  362 (390)
Q Consensus       356 ~~d~~~~  362 (390)
                      .+|+.+.
T Consensus       386 ~~d~~~~  392 (706)
T 2z3z_A          386 CIDIKGG  392 (706)
T ss_dssp             EEETTCC
T ss_pred             EEEcCCC
Confidence            8887664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=93.44  E-value=2.5  Score=41.02  Aligned_cols=189  Identities=10%  Similarity=-0.007  Sum_probs=98.5

Q ss_pred             EeecC-eEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEEC
Q 016368          143 LGVRN-NLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL  221 (390)
Q Consensus       143 ~~~~~-~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~  221 (390)
                      ...++ +++++.+..       +.+.+||..+++-+.+...+.   ......-+|+..++++.+..    ....++++|.
T Consensus       117 ~s~dg~~~~~~s~~~-------~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~----~~~~i~~~d~  182 (582)
T 3o4h_A          117 GVDTGEAVVFTGATE-------DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG----GRVSLFTSNL  182 (582)
T ss_dssp             EEECSSCEEEEEECS-------SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET----TEEEEEEEET
T ss_pred             eCCCCCeEEEEecCC-------CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC----CCeEEEEEcC
Confidence            33344 466665432       334588988887666543332   12222235665555544321    2246999999


Q ss_pred             CCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce------EE
Q 016368          222 KSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA------AS  295 (390)
Q Consensus       222 ~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~------~~  295 (390)
                      .++.    ++.+..-....    ...+..-+|+..+.+ ...+...+.++|+++++...+.. .........      .+
T Consensus       183 ~~g~----~~~l~~~~~~~----~~~~~SpDG~~l~~~-~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          183 SSGG----LRVFDSGEGSF----SSASISPGMKVTAGL-ETAREARLVTVDPRDGSVEDLEL-PSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             TTCC----CEEECCSSCEE----EEEEECTTSCEEEEE-ECSSCEEEEEECTTTCCEEECCC-SCSHHHHHCCSEEEEEE
T ss_pred             CCCC----ceEeecCCCcc----ccceECCCCCEEEEc-cCCCeeEEEEEcCCCCcEEEccC-CCcChhhhhhcccccee
Confidence            9998    87664332211    111222366654442 12222467789999888773322 111101111      00


Q ss_pred             EeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCC---ceEEEEEcCC
Q 016368          296 TMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENG---ERIMVVDVLA  361 (390)
Q Consensus       296 ~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~---~~v~~~d~~~  361 (390)
                      ...+|++++.+..++.+..|+.  .+...   .+. .....+...+|++++.+...   ..++++|..+
T Consensus       253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~-~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          253 YLPDGRLAVVARREGRSAVFID--GERVE---APQ-GNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ECTTSCEEEEEEETTEEEEEET--TEEEC---CCS-SEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EcCCCcEEEEEEcCCcEEEEEE--CCeec---cCC-CceEEEEecCCEEEEEEcCCCCCCeEEEEcCCC
Confidence            2267888888887888888887  33332   111 11123333378877665432   3577777653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=93.32  E-value=4.9  Score=39.34  Aligned_cols=175  Identities=10%  Similarity=0.038  Sum_probs=93.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-ccc--C--
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQ--L--  236 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~--~--  236 (390)
                      ..+.+||..+.+...  .+......-..+.+  ++++++.|+.+.        .+.+||..++.    -.. +..  +  
T Consensus       170 ~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~--------~i~lwd~~~g~----~~~~~~~~~~~~  235 (611)
T 1nr0_A          170 NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDG--------TIVLYNGVDGT----KTGVFEDDSLKN  235 (611)
T ss_dssp             SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCC----EEEECBCTTSSS
T ss_pred             CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCC--------cEEEEECCCCc----Eeeeeccccccc
Confidence            357778866544322  12111111122222  677777777664        68889988776    322 211  0  


Q ss_pred             -CCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCC-CceEEEeeCCeEEEEeCCCCcEE
Q 016368          237 -KDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWN-GPAASTMNEEELYVVNEGKGRLS  313 (390)
Q Consensus       237 -~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~g~lyv~gg~~~~v~  313 (390)
                       .....   -.+++.. +|+..+.|+   ....+.++|..+.+....-. ...... ....+. .++..++.++.++.+.
T Consensus       236 ~~h~~~---V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          236 VAHSGS---VFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGII-WTKQALVSISANGFIN  307 (611)
T ss_dssp             CSSSSC---EEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEE-CCSSGGGCEEEEE-ECSSCEEEEETTCCEE
T ss_pred             cccCCC---EEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeec-CCCCccceeEEEE-EcCCEEEEEeCCCcEE
Confidence             11111   1233332 566665532   23457789998776543211 111111 112222 5777788888888999


Q ss_pred             EEECCCCceEEccccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          314 KYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .||+.+..-..  .+........ ++.. +|+..+.++.+..|.+||+.+.
T Consensus       308 ~~~~~~~~~~~--~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          308 FVNPELGSIDQ--VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCCCcce--EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            99988764222  2222222222 3332 6777777777889999998764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.21  E-value=6.9  Score=38.42  Aligned_cols=106  Identities=8%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             CCcEEEeC-CCC--ceecCCCCCC-----CC---cceEEEE--ECCE----EEEEeccCCCCCCCccCeEEEEECCCCcc
Q 016368          164 ASPLAFNP-QSN--TWFFGPQLSI-----PR---RWCAMGS--VGGV----VYVASGVGAHYRGDVARSMKKWDLKSDRE  226 (390)
Q Consensus       164 ~~~~~~dp-~t~--~W~~~~~~~~-----~r---~~~~~~~--~~~~----lyv~GG~~~~~~~~~~~~~~~yd~~t~~~  226 (390)
                      +.++.+|. .++  .|+.-.....     ..   ...+.++  .+++    ||+...         ...+..+|.+|++.
T Consensus        73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---------dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---------DGNVAALNAETGET  143 (599)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---------TSEEEEEETTTCCE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---------CCEEEEEECCCCCE
Confidence            56889999 777  5876443321     11   1123344  5666    887532         13688999988773


Q ss_pred             ccccEEcccCCCCCccccceEEEEECCEEEEEcccCC--CCceeEEEeCCCC--CeEec
Q 016368          227 DWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGN--GAKDGAIYNVELD--KWKEM  281 (390)
Q Consensus       227 ~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~--~~~~~~~yd~~~~--~W~~~  281 (390)
                        .|+.-..-...... ...+.++.++++|+-+..+.  ....+..||.+++  .|+.-
T Consensus       144 --~W~~~~~~~~~~~~-~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          144 --VWKVENSDIKVGST-LTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             --EEEEECCCGGGTCB-CCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             --EEeecCCCCCccce-eecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence              38753221100000 01233457898887531111  1235678999876  48754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=93.18  E-value=6.8  Score=38.27  Aligned_cols=189  Identities=11%  Similarity=0.071  Sum_probs=95.2

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec-CCC--C---CCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEE
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF-GPQ--L---SIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKK  218 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~-~~~--~---~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  218 (390)
                      ++.+++.++..       ..+.+||..+++-.. +..  +   .....-.+++.. +++.++.|+.+.        .+.+
T Consensus       201 dg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--------~v~l  265 (611)
T 1nr0_A          201 DGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--------TIKI  265 (611)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--------EEEE
T ss_pred             CCCEEEEEECC-------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--------eEEE
Confidence            34555555432       468889988775432 211  0   111111122222 567777777654        7889


Q ss_pred             EECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee
Q 016368          219 WDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN  298 (390)
Q Consensus       219 yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  298 (390)
                      ||..+..    ....-.......  .....+..++...+.+.   .......+|+.+.+-...-.  .....-.+++...
T Consensus       266 Wd~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~l~s~s---~d~~i~~~~~~~~~~~~~~~--gh~~~v~~l~~sp  334 (611)
T 1nr0_A          266 WNVATLK----VEKTIPVGTRIE--DQQLGIIWTKQALVSIS---ANGFINFVNPELGSIDQVRY--GHNKAITALSSSA  334 (611)
T ss_dssp             EETTTTE----EEEEEECCSSGG--GCEEEEEECSSCEEEEE---TTCCEEEEETTTTEEEEEEC--CCSSCEEEEEECT
T ss_pred             EeCCCCc----eeeeecCCCCcc--ceeEEEEEcCCEEEEEe---CCCcEEEEeCCCCCcceEEc--CCCCCEEEEEEeC
Confidence            9998876    443222211111  01223334555444431   23346678877654222111  1111112233235


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +|+.++.++.++.+..||..+..-.............++... ++.++. ++.+..+.++|+.+
T Consensus       335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s-~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWDDHLKVVPAGG  397 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETTTEEEEECSSS
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE-EEcCCceEEeecCC
Confidence            788888999999999999988765543211111112223333 444443 35566778887654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.11  E-value=6.4  Score=37.73  Aligned_cols=169  Identities=6%  Similarity=0.023  Sum_probs=86.7

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      .+.+||.....-..+.....  .-.+++.. +++.++.|+.+.        .+.+||.....    -..+..-...    
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg--------~v~~~~~~~~~----~~~~~~~~~~----  387 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSS--SVWGVAFSPDGQTIASASDDK--------TVKLWNRNGQL----LQTLTGHSSS----  387 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTS--------EEEEEETTCCE----EEEEECCSSC----
T ss_pred             eEEEEeCCCCeeEEEeCCCC--CEEEEEECCCCCEEEEEeCCC--------EEEEEcCCCCE----EEEecCCCCC----
Confidence            56778876654443322111  11122222 566666666543        57788865443    3333221111    


Q ss_pred             cceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCce
Q 016368          244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWW  322 (390)
Q Consensus       244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W  322 (390)
                       ..+++. -+++..+.|+   ....+.+||.....-..+..   ......+++...++++++.++.++.+..||.....-
T Consensus       388 -v~~~~~s~dg~~l~~~~---~d~~v~~~~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~  460 (577)
T 2ymu_A          388 -VRGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLL  460 (577)
T ss_dssp             -EEEEEECTTSSCEEEEE---TTSEEEEECTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEE
T ss_pred             -eEEEEECCCCCEEEEEe---CCCEEEEEeCCCCEEEEecC---CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEE
Confidence             122222 2566555531   22346678865433332222   111112233235788888888899999999765433


Q ss_pred             EEcccccccccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          323 DEVIELAELKGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       323 ~~i~~~p~~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      ..+   ....... +++.. ++++++.++.+..|.+||...
T Consensus       461 ~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~  498 (577)
T 2ymu_A          461 QTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  498 (577)
T ss_dssp             EEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence            322   2222222 23333 677777777778899999644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.08  E-value=2.2  Score=41.66  Aligned_cols=116  Identities=11%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             EEEECCEEEEEcccCCC-CceeEEEeC-CCC--CeEecCCCCCC----C---CCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          248 AVGFKGNLCMVNLKGNG-AKDGAIYNV-ELD--KWKEMPEGMHA----G---WNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~-~~~~~~yd~-~~~--~W~~~~~~~~~----~---~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      .++.++++|+.+    . ...+.++|. +++  .|+.-......    .   ....+.++ .+++||+.. .++.++.+|
T Consensus        58 P~v~~g~vyv~~----~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~-~dg~l~alD  131 (571)
T 2ad6_A           58 PLVIGDMMYVHS----AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQ-ANGHLLALD  131 (571)
T ss_dssp             CEEETTEEEEEC----STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEEC-TTSEEEEEE
T ss_pred             cEEECCEEEEEe----CCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEe-CCCEEEEEE
Confidence            345799999984    2 345889998 665  69875431110    0   11123444 688887764 467899999


Q ss_pred             CCCCc--eEEccccccc--ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEec
Q 016368          317 ADHDW--WDEVIELAEL--KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       317 ~~~~~--W~~i~~~p~~--r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~~  370 (390)
                      .++.+  |+.-..-+..  ....+.++.+|+||+-...     ...++.+|..+.. ..|+..
T Consensus       132 ~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~  193 (571)
T 2ad6_A          132 AKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE-LKWRAF  193 (571)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred             CCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc-EEEEEc
Confidence            98764  8753211111  1122334568888876543     4589999998763 368854

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.93  E-value=4.9  Score=35.90  Aligned_cols=188  Identities=13%  Similarity=0.172  Sum_probs=94.5

Q ss_pred             cEEEeCCCCceecCCCC-CCCC-cceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCC-CCcc
Q 016368          166 PLAFNPQSNTWFFGPQL-SIPR-RWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKD-GRFS  242 (390)
Q Consensus       166 ~~~~dp~t~~W~~~~~~-~~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~-~~~~  242 (390)
                      ++.-.-.-.+|+.+... ..+. ...++...++.+|++|...         .++.-+=.-.+    |+.+..... +.. 
T Consensus        58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g---------~i~~S~DgG~t----W~~~~~~~~~~~~-  123 (327)
T 2xbg_A           58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPP---------IMLHTTDGGQS----WSQIPLDPKLPGS-  123 (327)
T ss_dssp             EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETT---------EEEEESSTTSS----CEECCCCTTCSSC-
T ss_pred             EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCC---------eEEEECCCCCC----ceECccccCCCCC-
Confidence            44433344589987532 2222 2334455577888875221         22221112345    999875321 111 


Q ss_pred             ccceEEE-EECCEEEEEcccCCCCceeEEEeCC--CCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECC-
Q 016368          243 REAVEAV-GFKGNLCMVNLKGNGAKDGAIYNVE--LDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDAD-  318 (390)
Q Consensus       243 r~~~~~~-~~~g~lyv~gg~g~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~-  318 (390)
                        ...++ .-++.+|+.+..      ..+|-..  -.+|+.+.... .. ....++...++.+++++ ..+.+++-+-. 
T Consensus       124 --~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~-~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g  192 (327)
T 2xbg_A          124 --PRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IG-VMRNLNRSPSGEYVAVS-SRGSFYSTWEPG  192 (327)
T ss_dssp             --EEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECSC-CC-CEEEEEECTTSCEEEEE-TTSSEEEEECTT
T ss_pred             --eEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-Cc-ceEEEEEcCCCcEEEEE-CCCcEEEEeCCC
Confidence              13333 357888888522      1243332  45899886522 21 22233332467777666 35566665433 


Q ss_pred             CCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCCCCcceE-ecCC---CCeeEEEEEe
Q 016368          319 HDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLASPARAWL-VDPP---RGFQVVAVHV  382 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~~~~~W~-~~~p---~g~~~~~~~~  382 (390)
                      ...|+.+.. +.....+.++.. ++.+|+++..+ .++..+..  .++.|+ +..|   .+..+.++..
T Consensus       193 G~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~G-~~~~s~~D--~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          193 QTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNGG-KIAFSDPD--NSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             CSSCEEEEC-CSSSCEEEEEECTTSCEEEEETTT-EEEEEETT--EEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             CCceeECCC-CCCCccceeEECCCCCEEEEeCCc-eEEEecCC--CCCeeEeccCCcccCCcceEEEEe
Confidence            678999853 333333444443 67888885443 45554311  234687 3333   3334444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.93  E-value=1.6  Score=41.05  Aligned_cols=142  Identities=11%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCC-CceeEEEeC
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNG-AKDGAIYNV  273 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~-~~~~~~yd~  273 (390)
                      +.||+.-.        . ..+.++|+.++.    .+.+..... .    ...+++ .+|.||+....+.. ......++.
T Consensus       153 g~Lyv~D~--------~-~~I~~id~~~g~----v~~~~~~~~-~----P~giavd~dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          153 DDLYWVGQ--------R-DAFRHVDFVNQY----VDIKTTNIG-Q----CADVNFTLNGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CEEEEECB--------T-SCEEEEETTTTE----EEEECCCCS-C----EEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred             CEEEEEeC--------C-CCEEEEECCCCE----EEEeecCCC-C----ccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence            78998721        1 689999998887    665543111 1    133333 46679988421111 122334544


Q ss_pred             CCCCeE---ecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCCce-EEcccccccccceeEEEE-CC-EEEE
Q 016368          274 ELDKWK---EMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWW-DEVIELAELKGAEKITAA-RG-RVCA  346 (390)
Q Consensus       274 ~~~~W~---~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~-~g-~l~i  346 (390)
                      . ..|.   .++. .   .....+++.. +|.||+.....+.+++||+.+..- ..+...........++.. +| .||+
T Consensus       215 ~-~~~~~~~~~~~-~---~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          215 A-SGFTERLSLCN-A---RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             G-GTTCCEEEEEE-C---SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred             C-CCeeccccccc-c---CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence            3 2232   1111 1   1112333313 799999987778999999986655 333222222223345554 44 5999


Q ss_pred             EeeCCceEEEEEcC
Q 016368          347 VCENGERIMVVDVL  360 (390)
Q Consensus       347 ~g~~~~~v~~~d~~  360 (390)
                      .-...+.|+.+|..
T Consensus       290 ad~~~~~I~~~~~d  303 (433)
T 4hw6_A          290 IYNGKHCIYRVDYN  303 (433)
T ss_dssp             EETTTTEEEEEEBC
T ss_pred             EeCCCCEEEEEeCC
Confidence            86667789998865

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=92.82  E-value=8.4  Score=38.34  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=115.5

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ...++..+...+.|+.+.........+ ..   ..     . ....+ +++.+.+.....+  .....++++|..+++..
T Consensus        93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~-~~---~~-----~-~~~~SPDG~~la~~~~~~G--~~~~~i~v~dl~tg~~~  160 (695)
T 2bkl_A           93 KAILYWRQGESGQEKVLLDPNGWSKDG-TV---SL-----G-TWAVSWDGKKVAFAQKPNA--ADEAVLHVIDVDSGEWS  160 (695)
T ss_dssp             SCEEEEEESTTSCCEEEECGGGSSSSS-CE---EE-----E-EEEECTTSSEEEEEEEETT--CSCCEEEEEETTTCCBC
T ss_pred             EEEEEEEcCCCCCcEEEEchHHhccCC-CE---EE-----E-EEEECCCCCEEEEEECCCC--CceEEEEEEECCCCCCc
Confidence            345677787777777765433201100 00   00     0 22223 4444444433222  22357999999999875


Q ss_pred             cCCCCCCCCcceEEEEE-CCEEEEEeccCCCC-----CCCccCeEEEEECCCCccccccE--EcccCCCC-CccccceEE
Q 016368          178 FGPQLSIPRRWCAMGSV-GGVVYVASGVGAHY-----RGDVARSMKKWDLKSDREDWKWE--KKAQLKDG-RFSREAVEA  248 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~-----~~~~~~~~~~yd~~t~~~~~~W~--~~~~~~~~-~~~r~~~~~  248 (390)
                      ....+..... ...+.. +|+.++++..+...     .......+++++..+..    -+  .+...+.. ..   ..+.
T Consensus       161 ~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~----~~~~lv~~~~~~~~~---~~~~  232 (695)
T 2bkl_A          161 KVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP----SKDTVVHERTGDPTT---FLQS  232 (695)
T ss_dssp             SSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG----GGCEEEECCCCCTTC---EEEE
T ss_pred             CCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc----hhceEEEecCCCCEE---EEEE
Confidence            2111211111 222332 56655555543210     00234568999998876    32  22222211 11   1222


Q ss_pred             E-EECCEEEEEccc-CCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC---CCcEEEEECCCCc--
Q 016368          249 V-GFKGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG---KGRLSKYDADHDW--  321 (390)
Q Consensus       249 ~-~~~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~---~~~v~~yd~~~~~--  321 (390)
                      . .-+|+..+++.. +.+...+.++|..+..|+.+.... .  .....+. .+|.+|+....   ++.++++|.++..  
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~  308 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV-G--AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA  308 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS-S--CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC-C--ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            2 235654444221 112234556677677787775412 1  1122233 46666666542   3589999987654  


Q ss_pred             -eEEcccccccccceeEEEECCEEEEEeeCC--ceEEEEEcCC
Q 016368          322 -WDEVIELAELKGAEKITAARGRVCAVCENG--ERIMVVDVLA  361 (390)
Q Consensus       322 -W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~--~~v~~~d~~~  361 (390)
                       |+.+...........+...++.+++....+  ..++++|+..
T Consensus       309 ~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          309 SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred             CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC
Confidence             877653221111223444588888776433  3677777643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=92.74  E-value=6.1  Score=36.55  Aligned_cols=64  Identities=9%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             CCeEEEEeCCCCcEEEEECCCCc-eEEccccccccccee-EEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDW-WDEVIELAELKGAEK-ITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~-~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.+++.++.++.+..||..+.. ...+..+........ +...  +..+++.|+.++.|.+||+...
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            67888899889999999998652 222222222222222 3332  3348888888889999999863

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=92.71  E-value=8.7  Score=38.24  Aligned_cols=183  Identities=8%  Similarity=-0.056  Sum_probs=92.5

Q ss_pred             CCcEEEeCCCCcee--cCCCCCCC-CcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          164 ASPLAFNPQSNTWF--FGPQLSIP-RRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~--~~~~~~~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+++++..+.+-.  .+-..+.. ....+.... +|+..+++....    .....++++|..+..    |+.+..-...
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~l~~~~~~  273 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG----WSENDVYWKRPGEKD----FRLLVKGVGA  273 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET----TTEEEEEEECTTCSS----CEEEEECSSC
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC----CCceEEEEEcCCCCc----eEEeecCCCc
Confidence            45888998877532  22111111 122222222 555444433321    134577777777777    8877653322


Q ss_pred             CccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCC---eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC--cEEE
Q 016368          240 RFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDK---WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG--RLSK  314 (390)
Q Consensus       240 ~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~--~v~~  314 (390)
                      .     ...+..+|.+|+.+..+.....+.++|+.+..   |+.+...-+ ...-..+.. .+++|++....++  .++.
T Consensus       274 ~-----~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~l~~~~~-~~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          274 K-----YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-SASLLSVSI-VGGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             C-----EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-SCEEEEEEE-ETTEEEEEEEETTEEEEEE
T ss_pred             e-----EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC-CCeEEEEEE-ECCEEEEEEEECCEEEEEE
Confidence            1     23333577766664222234567788987654   887654111 111223344 5888888876655  7888


Q ss_pred             EECCCCceEEcccccccccceeEEEE-CC-EEEEEeeC---CceEEEEEcCCC
Q 016368          315 YDADHDWWDEVIELAELKGAEKITAA-RG-RVCAVCEN---GERIMVVDVLAS  362 (390)
Q Consensus       315 yd~~~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~---~~~v~~~d~~~~  362 (390)
                      +|.....-..+. ++.......+... ++ .+++....   ...++.+|+.+.
T Consensus       347 ~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          347 ATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             EETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            887644333332 2211111111111 33 45444322   236888888765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=92.64  E-value=1.4  Score=39.66  Aligned_cols=59  Identities=10%  Similarity=0.163  Sum_probs=39.8

Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCC
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENG  351 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~  351 (390)
                      ++++.-+|.||+.....+.|.+||+++.+...+...+......+++.- +|+|||.....
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            444435789999988778999999955666666554433344455553 68899886443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=92.47  E-value=4.2  Score=36.85  Aligned_cols=136  Identities=8%  Similarity=0.061  Sum_probs=74.6

Q ss_pred             CeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc
Q 016368          214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP  292 (390)
Q Consensus       214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~  292 (390)
                      ..+.++|+++..    -.........     -.+++. -+|++.+.+    ......+++..++.-..............
T Consensus       157 ~~i~iwd~~~~~----~~~~~~~~~~-----V~~v~fspdg~~l~s~----s~~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          157 AIMRIIDPSDLT----EKFEIETRGE-----VKDLHFSTDGKVVAYI----TGSSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             CEEEEEETTTTE----EEEEEECSSC-----CCEEEECTTSSEEEEE----CSSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             CEEEEeECCCCc----EEEEeCCCCc-----eEEEEEccCCceEEec----cceeEEEEEeccCcceeeeecCCCCCCEE
Confidence            378899998876    3322221111     133333 367777664    33456677777765443222111111111


Q ss_pred             eEEEeeCCeEEEEeCCCC----cEEEEECCCCceEEcc--ccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          293 AASTMNEEELYVVNEGKG----RLSKYDADHDWWDEVI--ELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~----~v~~yd~~~~~W~~i~--~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++...+|..++.++.++    .++.+|..........  .+........ ++.. +|++++.|+.+..|.+||+.+.
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            222236888888776544    5777777665554332  2222222222 3332 7888888888889999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.36  E-value=5.2  Score=34.85  Aligned_cols=186  Identities=15%  Similarity=0.091  Sum_probs=95.7

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCCCcce-EEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCcc---ccccEEcc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIPRRWC-AMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDRE---DWKWEKKA  234 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~---~~~W~~~~  234 (390)
                      ..+.+||..++  .++.+..+....... +++..   ++.+++.|+.+.        .+.+||..+...   ...|+.+.
T Consensus        33 g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--------~v~vwd~~~~~~~~~~~~~~~~~  104 (351)
T 3f3f_A           33 QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK--------TVKLWEEDPDQEECSGRRWNKLC  104 (351)
T ss_dssp             SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEEEECTTSCTTSSCSEEEEE
T ss_pred             CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC--------eEEEEecCCCcccccccCcceee
Confidence            36778887654  333332222222222 22332   267777777654        678888876420   00134443


Q ss_pred             cCCCCCccccceEEEEE-C--CEEEEEcccCCCCceeEEEeCCCCC----eEec-----CCCCCCCCCC--ceEEEee--
Q 016368          235 QLKDGRFSREAVEAVGF-K--GNLCMVNLKGNGAKDGAIYNVELDK----WKEM-----PEGMHAGWNG--PAASTMN--  298 (390)
Q Consensus       235 ~~~~~~~~r~~~~~~~~-~--g~lyv~gg~g~~~~~~~~yd~~~~~----W~~~-----~~~~~~~~~~--~~~~~~~--  298 (390)
                      .+......  ..+++.. +  +.+++.|+   ....+.+||..+.+    |...     ....+.....  ..+....  
T Consensus       105 ~~~~~~~~--v~~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (351)
T 3f3f_A          105 TLNDSKGS--LYSVKFAPAHLGLKLACLG---NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR  179 (351)
T ss_dssp             EECCCSSC--EEEEEECCGGGCSEEEEEE---TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred             eecccCCc--eeEEEEcCCCCCcEEEEec---CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence            33221110  1233332 2  55555531   23456788887653    3210     0101111111  1222111  


Q ss_pred             -CCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CC----EEEEEeeCCceEEEEEcCCC
Q 016368          299 -EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RG----RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 -~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g----~l~i~g~~~~~v~~~d~~~~  362 (390)
                       ++.++++++.++.+..++........+..+........ +... ++    .+++.|+.+..|.+||+...
T Consensus       180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             SSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence             37888888888888777777777766665554444333 3333 33    67777777888999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.20  E-value=4.2  Score=37.52  Aligned_cols=149  Identities=7%  Similarity=-0.034  Sum_probs=80.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEE-cccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEK-KAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~-~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      ++.+++.|+.+.        .+.+||..+..    -.. +...+....   ..+++.. ++++.+.|+   ....+.+||
T Consensus       181 ~~~~l~~~~~d~--------~i~iwd~~~~~----~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~---~dg~i~iwd  242 (437)
T 3gre_A          181 EKSLLVALTNLS--------RVIIFDIRTLE----RLQIIENSPRHGA---VSSICIDEECCVLILGT---TRGIIDIWD  242 (437)
T ss_dssp             SCEEEEEEETTS--------EEEEEETTTCC----EEEEEECCGGGCC---EEEEEECTTSCEEEEEE---TTSCEEEEE
T ss_pred             CCCEEEEEeCCC--------eEEEEeCCCCe----eeEEEccCCCCCc---eEEEEECCCCCEEEEEc---CCCeEEEEE
Confidence            467777777654        78999998876    221 111101111   1223322 566666642   234477899


Q ss_pred             CCCCCeEecCCCCCCCCCCceEEE----eeCCeEEEEeCCCCcEEEEECCCCceEEccc-c----------c--------
Q 016368          273 VELDKWKEMPEGMHAGWNGPAAST----MNEEELYVVNEGKGRLSKYDADHDWWDEVIE-L----------A--------  329 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~~~~~----~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~-~----------p--------  329 (390)
                      +.+.+....-. .........++.    ..++.+++.|+.++.+..||..+..-...-. .          |        
T Consensus       243 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (437)
T 3gre_A          243 IRFNVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL  321 (437)
T ss_dssp             TTTTEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred             cCCccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence            98764432111 011111111111    0246677888888899999998665222110 0          0        


Q ss_pred             ------ccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          330 ------ELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       330 ------~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                            ......+++..++.+++.|+.+..|.+||+.+.
T Consensus       322 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             CCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred             eecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence                  001122344457777777777889999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=92.16  E-value=5.7  Score=35.01  Aligned_cols=144  Identities=8%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++.++.|+.+.        .+.+||..++..   ...+..- ...    -.+++. -++.+.+.|+   ....+.+||.
T Consensus        76 dg~~l~s~s~D~--------~v~~wd~~~~~~---~~~~~~h-~~~----v~~~~~~~~~~~l~s~s---~D~~i~vwd~  136 (319)
T 3frx_A           76 DGAYALSASWDK--------TLRLWDVATGET---YQRFVGH-KSD----VMSVDIDKKASMIISGS---RDKTIKVWTI  136 (319)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTEE---EEEEECC-SSC----EEEEEECTTSCEEEEEE---TTSCEEEEET
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCCe---eEEEccC-CCc----EEEEEEcCCCCEEEEEe---CCCeEEEEEC
Confidence            566666776654        788999988761   1222111 111    122222 2455555532   2345678888


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEe------eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccce-eEEEE-CCEEE
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTM------NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-RGRVC  345 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~------~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-~g~l~  345 (390)
                      ....-..+..   .......+...      .++.+++.++.++.+..||..+..-  ...+....... +++.. +|+++
T Consensus       137 ~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          137 KGQCLATLLG---HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             TSCEEEEECC---CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEE
T ss_pred             CCCeEEEEec---cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEE
Confidence            6544333221   11111111110      1455777888899999999886432  22222222222 23333 67777


Q ss_pred             EEeeCCceEEEEEcCCC
Q 016368          346 AVCENGERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+.+..|.+||+.+.
T Consensus       212 ~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EEEETTCEEEEEETTTT
T ss_pred             EEEeCCCeEEEEECCCC
Confidence            77777889999998765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.13  E-value=2.6  Score=38.91  Aligned_cols=94  Identities=7%  Similarity=0.040  Sum_probs=58.0

Q ss_pred             eeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEE
Q 016368          267 DGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCA  346 (390)
Q Consensus       267 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i  346 (390)
                      .+.++|..+++-..+-........-.+++...+|..++.|+.++.+..||.++.+-  +..+........+...++.+.+
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--~~~~~~h~~~v~~~s~~~~~l~  203 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWNSYILS  203 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEETTEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--EEEEeCCCCceEEEeeCCCEEE
Confidence            34456666665444322011111222333335789999999999999999987643  3333333334445556778888


Q ss_pred             EeeCCceEEEEEcCCC
Q 016368          347 VCENGERIMVVDVLAS  362 (390)
Q Consensus       347 ~g~~~~~v~~~d~~~~  362 (390)
                      .|+.+..+.++|....
T Consensus       204 sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             EEETTSEEEEEETTSS
T ss_pred             EEeCCCceeEeeeccc
Confidence            8788888999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=92.11  E-value=6.4  Score=35.34  Aligned_cols=64  Identities=11%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             eCCeEEEEeCCCCc-EEEEECCCCceEEcccccc--cccce-eEEEE-CCEEEEEeeCCceEEEEEcCCCC
Q 016368          298 NEEELYVVNEGKGR-LSKYDADHDWWDEVIELAE--LKGAE-KITAA-RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       298 ~~g~lyv~gg~~~~-v~~yd~~~~~W~~i~~~p~--~r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .+|++++.|+.++. +..||..+.+-  +..+..  ..... +++.. +++.++.++.+..+.+||+....
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            57899999999998 99999987543  333321  22222 33333 67777777888899999997754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=92.06  E-value=4.4  Score=40.47  Aligned_cols=58  Identities=9%  Similarity=0.073  Sum_probs=31.9

Q ss_pred             CeEEEEECCCC---ccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCC
Q 016368          214 RSMKKWDLKSD---REDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE  283 (390)
Q Consensus       214 ~~~~~yd~~t~---~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~  283 (390)
                      ..++++|..++   .    -+.+...... .   ......-+|+..+++    ....+.++|+.+++...+..
T Consensus       129 ~~i~~~d~~~~~~~~----~~~l~~~~~~-~---~~~~~SPDG~~la~~----~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          129 GELYLYDLKQEGKAA----VRQLTHGEGF-A---TDAKLSPKGGFVSFI----RGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             TEEEEEESSSCSTTS----CCBCCCSSSC-E---EEEEECTTSSEEEEE----ETTEEEEEETTTTEEEECCC
T ss_pred             CcEEEEECCCCCcce----EEEcccCCcc-c---ccccCCCCCCEEEEE----eCCcEEEEecCCCCEEEecc
Confidence            48899999887   5    4443332111 1   111222366644443    22467788988877666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=92.01  E-value=3.6  Score=36.13  Aligned_cols=141  Identities=6%  Similarity=0.016  Sum_probs=76.9

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCC
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVE  274 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~  274 (390)
                      +.||+.+-..        ..+..|++ ++.    .+.+.... ..    ..+.+. -+|++|+..   .+...+.+||+.
T Consensus        57 ~~l~~~d~~~--------~~i~~~~~-~g~----~~~~~~~~-~~----~~gl~~d~dG~l~v~~---~~~~~v~~~~~~  115 (305)
T 3dr2_A           57 RTLVWSDLVG--------RRVLGWRE-DGT----VDVLLDAT-AF----TNGNAVDAQQRLVHCE---HGRRAITRSDAD  115 (305)
T ss_dssp             TEEEEEETTT--------TEEEEEET-TSC----EEEEEESC-SC----EEEEEECTTSCEEEEE---TTTTEEEEECTT
T ss_pred             CEEEEEECCC--------CEEEEEeC-CCC----EEEEeCCC-Cc----cceeeECCCCCEEEEE---CCCCEEEEECCC
Confidence            4577775433        36888888 444    33332211 11    133332 378888873   123467788886


Q ss_pred             CCCeEecCCCCCCC--CCCceEEEeeCCeEEEE----eCC-------------CCcEEEEECCCCceEEcccccccccce
Q 016368          275 LDKWKEMPEGMHAG--WNGPAASTMNEEELYVV----NEG-------------KGRLSKYDADHDWWDEVIELAELKGAE  335 (390)
Q Consensus       275 ~~~W~~~~~~~~~~--~~~~~~~~~~~g~lyv~----gg~-------------~~~v~~yd~~~~~W~~i~~~p~~r~~~  335 (390)
                       ++.+.+.......  ..-..+++.-+|.||+.    |..             .+.+++||+++.+.+.+.   ......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence             6666553311111  11123333368999985    221             247999999888877764   122223


Q ss_pred             eEEEE-CC-EEEEEeeC-----CceEEEEEcCC
Q 016368          336 KITAA-RG-RVCAVCEN-----GERIMVVDVLA  361 (390)
Q Consensus       336 ~~~~~-~g-~l~i~g~~-----~~~v~~~d~~~  361 (390)
                      +++.. ++ .||+....     ...|+++|+..
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            44444 44 47776443     25788888764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=91.79  E-value=5.2  Score=36.03  Aligned_cols=196  Identities=10%  Similarity=-0.009  Sum_probs=91.3

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee--cCeEEEEEeecCCCCCCCCCcEEEeCCCCce
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIAATTPHFLPALASPLAFNPQSNTW  176 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W  176 (390)
                      ...++.+|+.+++-..+...+.  ...               .....  ++..+++... .........++++|..+...
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~~~--~~~---------------~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~  228 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQENQ--WLG---------------HPIYRPYDDSTVAFCHE-GPHDLVDARMWLINEDGTNM  228 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEESS--CEE---------------EEEEETTEEEEEEEEEC-SCTTTSSCSEEEEETTSCCC
T ss_pred             cceEEEEECCCCceEEeecCCc--ccc---------------ccEECCCCCCEEEEEEe-cCCCCCcceEEEEeCCCCce
Confidence            3568889988877655542221  000               22222  3343433332 11112346899999988776


Q ss_pred             ecCCCCCCCCcceEEEEE-CCE-EEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc---cccceEEEEE
Q 016368          177 FFGPQLSIPRRWCAMGSV-GGV-VYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF---SREAVEAVGF  251 (390)
Q Consensus       177 ~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~---~r~~~~~~~~  251 (390)
                      +.+............+.. +|+ |+..+....    .....++++|+.++.    -+.+...+....   ..... ...-
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~----~~~l~~~~~~~~~~~~~~~~-~~sp  299 (388)
T 3pe7_A          229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKG----SPDRFIYSADPETLE----NRQLTSMPACSHLMSNYDGS-LMVG  299 (388)
T ss_dssp             EESCCCCTTEEEEEEEECTTSSCEEEEEEETT----CCCEEEEEECTTTCC----EEEEEEECCEEEEEECTTSS-EEEE
T ss_pred             EEeeeCCCCcccccceECCCCCEEEEEecCCC----CCcceEEEEecCCCc----eEEEEcCCCceeeeecCCCC-eEcc
Confidence            665443211111111222 554 544433222    122359999999988    666544432000   00001 1223


Q ss_pred             CCE-EEEEccc-----CCCCceeEEEeCCCCCeEecCCCCCCCC---------CCceEEEeeCCeEEEE-eCCCC--cEE
Q 016368          252 KGN-LCMVNLK-----GNGAKDGAIYNVELDKWKEMPEGMHAGW---------NGPAASTMNEEELYVV-NEGKG--RLS  313 (390)
Q Consensus       252 ~g~-lyv~gg~-----g~~~~~~~~yd~~~~~W~~~~~~~~~~~---------~~~~~~~~~~g~lyv~-gg~~~--~v~  313 (390)
                      +|+ +++....     ..+...+.++|+.+++-+.+.... ...         .....+...+|+.+++ ...++  .++
T Consensus       300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD-TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             EECCC------------CCCCEEEEEETTTTEEEEEEECC-CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc-CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            333 3322100     023456778898887766554311 100         1112222256754444 43333  788


Q ss_pred             EEECCCCce
Q 016368          314 KYDADHDWW  322 (390)
Q Consensus       314 ~yd~~~~~W  322 (390)
                      .+|.....|
T Consensus       379 ~~~l~~~~~  387 (388)
T 3pe7_A          379 LATLPESVW  387 (388)
T ss_dssp             EEECCGGGG
T ss_pred             EEECChhcc
Confidence            888877666

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=91.59  E-value=5.3  Score=35.00  Aligned_cols=175  Identities=10%  Similarity=0.043  Sum_probs=87.2

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-Cc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-RF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-~~  241 (390)
                      +.+++|++ +++.+..... .. .-.+.+.. +|+||+....        ...+.+||+. ++    .+.+...... ..
T Consensus        67 ~~i~~~~~-~g~~~~~~~~-~~-~~~gl~~d~dG~l~v~~~~--------~~~v~~~~~~-g~----~~~~~~~~~~~~~  130 (305)
T 3dr2_A           67 RRVLGWRE-DGTVDVLLDA-TA-FTNGNAVDAQQRLVHCEHG--------RRAITRSDAD-GQ----AHLLVGRYAGKRL  130 (305)
T ss_dssp             TEEEEEET-TSCEEEEEES-CS-CEEEEEECTTSCEEEEETT--------TTEEEEECTT-SC----EEEEECEETTEEC
T ss_pred             CEEEEEeC-CCCEEEEeCC-CC-ccceeeECCCCCEEEEECC--------CCEEEEECCC-CC----EEEEEeccCCCcc
Confidence            57888988 4544332211 11 11222222 6788876422        1367888886 55    5554321111 10


Q ss_pred             cccceEEE-EECCEEEEE----cccC----------CCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEE
Q 016368          242 SREAVEAV-GFKGNLCMV----NLKG----------NGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVV  305 (390)
Q Consensus       242 ~r~~~~~~-~~~g~lyv~----gg~g----------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~  305 (390)
                      .+ ...++ --+|++|+.    |...          .....+..||+++++.+.+. ....+   .+++...+++ ||+.
T Consensus       131 ~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p---~gl~~spdg~~lyv~  205 (305)
T 3dr2_A          131 NS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP---NGLAFSPDEQTLYVS  205 (305)
T ss_dssp             SC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE---EEEEECTTSSEEEEE
T ss_pred             CC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC---cceEEcCCCCEEEEE
Confidence            00 12233 247889985    2110          01234678898888777654 12111   1333324565 7877


Q ss_pred             eCCC-----CcEEEEECCCCceEEc---ccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          306 NEGK-----GRLSKYDADHDWWDEV---IELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       306 gg~~-----~~v~~yd~~~~~W~~i---~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....     +.+++||...+.....   ...+ .....++..- +|.||+-.  ...|.+||+...
T Consensus       206 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~  268 (305)
T 3dr2_A          206 QTPEQGHGSVEITAFAWRDGALHDRRHFASVP-DGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ  268 (305)
T ss_dssp             ECCC---CCCEEEEEEEETTEEEEEEEEECCS-SSCCCSEEECTTSCEEECC--SSEEEEECTTSC
T ss_pred             ecCCcCCCCCEEEEEEecCCCccCCeEEEECC-CCCCCeEEECCCCCEEEec--CCcEEEECCCCC
Confidence            6542     6899999876542211   1111 1112234443 67777753  345888887544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=91.53  E-value=7.2  Score=34.69  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=36.1

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+|+.++.|+.++.+..||.....- ....+........++.. ++.+... +.+..+.+||+.+.
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTY-PQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQ  286 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSS-CSEEEECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcc-cceeecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCC
Confidence            5788889999999999999843221 11111111111223333 4555554 44557889998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=91.49  E-value=7.2  Score=34.66  Aligned_cols=144  Identities=9%  Similarity=0.091  Sum_probs=72.9

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccE-EcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE-KKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~-~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      ++.+.+.|+.+.        .+.+||..++.    .. .+.. ....    -.+++. -+++..+.|+   ....+.+||
T Consensus        87 ~~~~l~s~s~D~--------~v~lwd~~~~~----~~~~~~~-h~~~----v~~v~~sp~~~~l~s~~---~d~~i~~wd  146 (343)
T 2xzm_R           87 ENCFAISSSWDK--------TLRLWDLRTGT----TYKRFVG-HQSE----VYSVAFSPDNRQILSAG---AEREIKLWN  146 (343)
T ss_dssp             STTEEEEEETTS--------EEEEEETTSSC----EEEEEEC-CCSC----EEEEEECSSTTEEEEEE---TTSCEEEEE
T ss_pred             CCCEEEEEcCCC--------cEEEEECCCCc----EEEEEcC-CCCc----EEEEEECCCCCEEEEEc---CCCEEEEEe
Confidence            455666666554        78899998876    32 2211 1111    122332 2555555532   234567888


Q ss_pred             CCCCCeEecCCCCCCCCCCceEEEeeC----------CeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--
Q 016368          273 VELDKWKEMPEGMHAGWNGPAASTMNE----------EELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--  340 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~~~~~~~~----------g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--  340 (390)
                      .....-...............+....+          +.+++.++.++.+..||...   .....+.........+.+  
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECT
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECC
Confidence            764432222210011111111111111          25777888899999999442   222222222222222333  


Q ss_pred             CCEEEEEeeCCceEEEEEcCC
Q 016368          341 RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       341 ~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      +|+.++.|+.+..|.+||+..
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSC
T ss_pred             CCCEEEEEcCCCeEEEEECCC
Confidence            677777777788999999844

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.47  E-value=3.5  Score=41.11  Aligned_cols=117  Identities=15%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             EEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCC-------CCCCceEEEeeCCeEEEEeCCCCcEEEEEC
Q 016368          247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHA-------GWNGPAASTMNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~-------~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~  317 (390)
                      +.++.+|++|+..    ....+..+|.+++  .|+.-......       .....+.++ .+++||+. ..++.++.+|.
T Consensus        61 ~P~v~~g~vyv~~----~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~-~~dg~l~alD~  134 (668)
T 1kv9_A           61 TPLFHDGVIYTSM----SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVG-TLDGRLIALDA  134 (668)
T ss_dssp             CCEEETTEEEEEE----GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEE-CTTSEEEEEET
T ss_pred             CCEEECCEEEEEC----CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEE-cCCCEEEEEEC
Confidence            3456899999985    2345778998766  58875431110       001123344 67887765 45679999999


Q ss_pred             CCCc--eEEccccccc--ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEec
Q 016368          318 DHDW--WDEVIELAEL--KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       318 ~~~~--W~~i~~~p~~--r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~~  370 (390)
                      ++.+  |+.-..-+..  ....+.++.+++||+-...     ...++.+|..+.. ..|...
T Consensus       135 ~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~  195 (668)
T 1kv9_A          135 KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRFY  195 (668)
T ss_dssp             TTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred             CCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-EEEEec
Confidence            8765  8764321111  1122345568888875432     2579999998763 358854

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=91.27  E-value=3.2  Score=41.48  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             EEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCC-------CCCCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          248 AVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHA-------GWNGPAASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~-------~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      .++.+|++|+.+    ....+..+|.+++  .|+.-......       .....+.++ .+++||+.. .++.++.+|.+
T Consensus        73 P~v~~g~vyv~~----~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~-~dg~l~alD~~  146 (677)
T 1kb0_A           73 PVVVDGIMYVSA----SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGA-WDGRLIALDAA  146 (677)
T ss_dssp             CEEETTEEEEEC----GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEEC-TTSEEEEEETT
T ss_pred             CEEECCEEEEEC----CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEc-CCCEEEEEECC
Confidence            456899999985    2345788998876  69875441111       011223444 678777654 46789999998


Q ss_pred             CCc--eEEccc-ccc--cccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEec
Q 016368          319 HDW--WDEVIE-LAE--LKGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       319 ~~~--W~~i~~-~p~--~r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~~  370 (390)
                      +.+  |+.-.. -+.  .......++.+++||+....     ...|+.+|..+.. ..|...
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~-~~W~~~  207 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWRWF  207 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred             CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc-EEEEec
Confidence            765  876432 111  11122345568888886542     3579999998763 368853

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=90.89  E-value=9.8  Score=35.49  Aligned_cols=133  Identities=8%  Similarity=-0.067  Sum_probs=73.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccE---EcccCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWE---KKAQLK  237 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~---~~~~~~  237 (390)
                      +.+.++|+.+++...+..   .-.......+  ++ .||+......    .....+..++... .    |.   .++.+.
T Consensus       159 ~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~----~~~~~v~~~~~~g-~----~~~~~~l~~~~  226 (430)
T 3tc9_A          159 HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNN----NDRPNNYILTRES-G----FKVITELTKGQ  226 (430)
T ss_dssp             EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSC----TTSEEEEEEEGGG-T----SCSEEEEEECS
T ss_pred             CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCC----cccceEEEEeCCC-c----eeeeeeeccCC
Confidence            678999999887766533   1122222222  34 5998865332    1223456666543 3    33   333332


Q ss_pred             CCCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEE
Q 016368          238 DGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSK  314 (390)
Q Consensus       238 ~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~  314 (390)
                      .+      +.+++.  +|.||+.   ..+...+.+||+.+..-..+.. .+.......+++..+|+ ||+.....+.|++
T Consensus       227 ~p------~giavdp~~g~lyv~---d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          227 NC------NGAETHPINGELYFN---SWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SC------CCEEECTTTCCEEEE---ETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             Cc------eEEEEeCCCCEEEEE---ECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            22      344443  6889988   2344568899998765433322 11111112344324566 9999887888888


Q ss_pred             EECC
Q 016368          315 YDAD  318 (390)
Q Consensus       315 yd~~  318 (390)
                      |+..
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            7655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=90.83  E-value=14  Score=36.76  Aligned_cols=104  Identities=7%  Similarity=0.004  Sum_probs=53.3

Q ss_pred             eEEEEECCC-CccccccEEcccC-CCCCccccceEEEEECCEEEEEccc--CCCCceeEEEeCCCCCeEecCCCCCCCC-
Q 016368          215 SMKKWDLKS-DREDWKWEKKAQL-KDGRFSREAVEAVGFKGNLCMVNLK--GNGAKDGAIYNVELDKWKEMPEGMHAGW-  289 (390)
Q Consensus       215 ~~~~yd~~t-~~~~~~W~~~~~~-~~~~~~r~~~~~~~~~g~lyv~gg~--g~~~~~~~~yd~~~~~W~~~~~~~~~~~-  289 (390)
                      .++++|..+ +.    -..+... .....  ...... -+|+..+++..  +.....+.++|+.+.+...+.......+ 
T Consensus       264 ~l~~~d~~~~~~----~~~~~~~~~~~~~--~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          264 KLGVISPAEQAQ----TQWIDLGKEQDIY--LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEEEECSSTTCC----CEEECCCSCSSEE--EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             EEEEEECCCCCc----eEEecCCCCcceE--EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            788889988 76    4444322 11111  012222 45554443221  2123456788998887665432111111 


Q ss_pred             -CCceEEEeeCCeEEEEeCCCC--cEEEEECCCCceEEcc
Q 016368          290 -NGPAASTMNEEELYVVNEGKG--RLSKYDADHDWWDEVI  326 (390)
Q Consensus       290 -~~~~~~~~~~g~lyv~gg~~~--~v~~yd~~~~~W~~i~  326 (390)
                       ....++...+|++++.+..++  .+|.+|.... ...+.
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence             111222226888777776665  7888887655 55544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.68  E-value=10  Score=36.95  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC---ccccceEEEEECCEEEEEcccCCCCce
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR---FSREAVEAVGFKGNLCMVNLKGNGAKD  267 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~---~~r~~~~~~~~~g~lyv~gg~g~~~~~  267 (390)
                      -++.+++||+.+..         ..+.++|.+|++.  .|+.-...+...   +.....+.++.++++|+..    ....
T Consensus        64 P~v~~g~vyv~~~~---------~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t----~dg~  128 (582)
T 1flg_A           64 AIVSDGVIYVTASY---------SRLFALDAKTGKR--LWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT----LDAS  128 (582)
T ss_dssp             CEEETTEEEEEETT---------TEEEEEESSSCCE--EEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE----TTTE
T ss_pred             cEEECCEEEEEcCC---------CCEEEEECCCCcE--EEEEcCCCCcccccccccCCCccEEECCEEEEEe----CCCE
Confidence            45679999997643         1488999988773  387644332210   0000123456899999864    3345


Q ss_pred             eEEEeCCCC--CeEecCCCCCCCC-CCceEEEeeCC------eEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368          268 GAIYNVELD--KWKEMPEGMHAGW-NGPAASTMNEE------ELYVVNE-----GKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       268 ~~~yd~~~~--~W~~~~~~~~~~~-~~~~~~~~~~g------~lyv~gg-----~~~~v~~yd~~~~~--W~~  324 (390)
                      +..+|.+++  .|+.......... ...+.++ .++      .||+-..     .++.++.||.++.+  |+.
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            788999877  5886433111111 1112222 455      5554321     25689999998765  864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.53  E-value=11  Score=35.16  Aligned_cols=176  Identities=10%  Similarity=-0.008  Sum_probs=92.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcce-EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCcccccc-EEcccCCCCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWC-AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKW-EKKAQLKDGR  240 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W-~~~~~~~~~~  240 (390)
                      +.+.++|+.+++...+..   .-... ++++. ++.||+.--...    .....+..++.....   .+ ..++.+..+ 
T Consensus       162 ~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~----~~~~gv~~~~~~~~~---~~~~~~~~~~~P-  230 (433)
T 4hw6_A          162 DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSS----DTNTGIYLFTRASGF---TERLSLCNARGA-  230 (433)
T ss_dssp             SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSC----TTSEEEEEECGGGTT---CCEEEEEECSSB-
T ss_pred             CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCC----cccceEEEEECCCCe---eccccccccCCC-
Confidence            689999999888776543   11122 22222 556998753321    112245555554321   01 123322221 


Q ss_pred             ccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCCCe-EecCCCCCCCCCCceEEEeeCC-eEEEEeCCCCcEEEEE
Q 016368          241 FSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPEGMHAGWNGPAASTMNEE-ELYVVNEGKGRLSKYD  316 (390)
Q Consensus       241 ~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg~~~~v~~yd  316 (390)
                           ..+++.  +|.||+..   .....+.+||+.+.+- ..+......+ ....+++..+| .||+.....+.|+++|
T Consensus       231 -----~giavd~~~G~lyv~d---~~~~~V~~~d~~~g~~~~~~~~~~~~~-~~~~ia~dpdG~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          231 -----KTCAVHPQNGKIYYTR---YHHAMISSYDPATGTLTEEEVMMDTKG-SNFHIVWHPTGDWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             -----CCCEECTTTCCEEECB---TTCSEEEEECTTTCCEEEEEEECSCCS-SCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -----CEEEEeCCCCeEEEEE---CCCCEEEEEECCCCeEEEEEeccCCCC-CcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence                 233333  68899872   2345678999986665 2221101111 11234432455 4999998788999977


Q ss_pred             CC--CCceE---Ec-cccc------------ccccceeEEE----------ECCEEEEEeeCCceEEEEEc
Q 016368          317 AD--HDWWD---EV-IELA------------ELKGAEKITA----------ARGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       317 ~~--~~~W~---~i-~~~p------------~~r~~~~~~~----------~~g~l~i~g~~~~~v~~~d~  359 (390)
                      ..  +....   .+ ....            ......++++          .+|.|||.-..++.|..+|.
T Consensus       302 ~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          302 YNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             BCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            54  33221   11 1100            1112345665          36789988555678888875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.38  E-value=7.6  Score=35.64  Aligned_cols=105  Identities=11%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCC--CeEecC--CCCCCCCCC--ceEEEeeCC-eEEEEeCCCCcEEEEECCCCce--
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELD--KWKEMP--EGMHAGWNG--PAASTMNEE-ELYVVNEGKGRLSKYDADHDWW--  322 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~--~~~~~~~~~--~~~~~~~~g-~lyv~gg~~~~v~~yd~~~~~W--  322 (390)
                      ++++++.|    ....+.+||+.+.  .+..+.  +........  .+++...++ .+++.|+.++.+..||..+..-  
T Consensus       188 ~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          188 DYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             TSSEEEEE----CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             CCCEEEEe----CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            55666663    3455678888732  233221  100011111  222222345 8889999999999999987663  


Q ss_pred             ---EEccccccc---------ccce-eEEEE-CCEEEEEeeCCceEEEEEcCC
Q 016368          323 ---DEVIELAEL---------KGAE-KITAA-RGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       323 ---~~i~~~p~~---------r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~  361 (390)
                         ..+.....+         .... .+... +|++++.++. ..+.+||+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence               222211000         0122 23333 6777777676 8999999975

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=90.24  E-value=11  Score=34.45  Aligned_cols=62  Identities=13%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCeEEEEeC---------CCCcEEEEECCCCceEEcccccccccceeEEEE-CCE--EEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNE---------GKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR--VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg---------~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~--l~i~g~~~~~v~~~d~~~~  362 (390)
                      +++||+...         ..+.++++|.++.  +.+..++......++... +|+  +|+.....+.|.++|..+.
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            478888653         1348999998764  444555544445566555 555  5554335779999999876

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.10  E-value=10  Score=34.72  Aligned_cols=185  Identities=9%  Similarity=0.062  Sum_probs=92.7

Q ss_pred             CcEEEeCCC--CceecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC---
Q 016368          165 SPLAFNPQS--NTWFFGPQLSIPRRWCAMGSV---GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL---  236 (390)
Q Consensus       165 ~~~~~dp~t--~~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~---  236 (390)
                      .+++++...  .+|+.+.+......-++++..   .+.||+.+....     .-..++..+-...+    |+.+...   
T Consensus        32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~-----~g~gl~~s~D~G~t----W~~~~~~~~~  102 (394)
T 3b7f_A           32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH-----LGPTVFRSDDGGGN----WTEATRPPAF  102 (394)
T ss_dssp             EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-------CCEEEEEESSTTSC----CEECSBCCCC
T ss_pred             ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC-----CCccEEEeCCCCCC----ceECCccccC
Confidence            366777654  689876422222223344443   467887654321     11245666556677    9988642   


Q ss_pred             CCCCc-----c-ccceEEEEE----CCEEEEEcccCCCCceeEEEeCCCCCeEecCCC--CCC--------------CCC
Q 016368          237 KDGRF-----S-REAVEAVGF----KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEG--MHA--------------GWN  290 (390)
Q Consensus       237 ~~~~~-----~-r~~~~~~~~----~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~--~~~--------------~~~  290 (390)
                      +....     . ....++++.    .+.+|+.+    ....+...+-...+|+.+...  .+.              ...
T Consensus       103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~----~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          103 NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT----SPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCC----CCCCCEEEEEEECCTTSTTCEEEEE----ETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             CCcccccccccccceeEEEeCCCCCCCEEEEEe----cCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence            11100     0 001223332    57788763    122344555566799987431  011              001


Q ss_pred             CceEEEee---CCeEEEEeCCCCcEEEEECCCCceEEcccc------ccc-----ccceeEEEE-C--CEEEEEeeCCce
Q 016368          291 GPAASTMN---EEELYVVNEGKGRLSKYDADHDWWDEVIEL------AEL-----KGAEKITAA-R--GRVCAVCENGER  353 (390)
Q Consensus       291 ~~~~~~~~---~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~------p~~-----r~~~~~~~~-~--g~l~i~g~~~~~  353 (390)
                      ...+++ .   .+.||+... .+.+++.+-...+|+.+..-      |..     ...+.++.. .  +.||+. .. ..
T Consensus       179 i~~i~~-d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg-~~-~g  254 (394)
T 3b7f_A          179 MHSILV-DPRDPKHLYIGMS-SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ-NH-CG  254 (394)
T ss_dssp             EEEEEE-CTTCTTCEEEEEE-TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE-ET-TE
T ss_pred             eeEEEE-CCCCCCEEEEEEC-CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE-cC-Ce
Confidence            123332 2   356776543 34688888888899988531      111     112344443 2  567764 32 34


Q ss_pred             EEEEEcCCCCCcceEe
Q 016368          354 IMVVDVLASPARAWLV  369 (390)
Q Consensus       354 v~~~d~~~~~~~~W~~  369 (390)
                      ++..+-...   .|+.
T Consensus       255 l~~s~D~G~---tW~~  267 (394)
T 3b7f_A          255 IYRMDRREG---VWKR  267 (394)
T ss_dssp             EEEEETTTT---EEEC
T ss_pred             EEEeCCCCC---cceE
Confidence            666664444   7873

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=90.07  E-value=11  Score=34.56  Aligned_cols=63  Identities=10%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             eCCeEEEEeCC---------CCcEEEEECCCCceEEcccccccccceeEEEE-CCE--EEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEG---------KGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR--VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~---------~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~--l~i~g~~~~~v~~~d~~~~  362 (390)
                      -+++||+.-..         .+.++++|.++.+  .+..++......++.+. +++  +|+..+..++|.++|..+.
T Consensus       290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCCeEEEEeccccccccCCCCCEEEEEECCCCe--EEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            46899996431         1379999998755  44444444444556654 554  6665555779999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=89.05  E-value=12  Score=38.78  Aligned_cols=186  Identities=11%  Similarity=0.009  Sum_probs=92.2

Q ss_pred             CeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCcc
Q 016368          147 NNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDRE  226 (390)
Q Consensus       147 ~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~  226 (390)
                      +.+++.|+..       ..+.+||..+.+-....  .....-.+++...+++.+.|+.+        ..+.+||..+.. 
T Consensus        29 g~~lAsgs~D-------g~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg~~L~S~s~D--------~~v~lWd~~~~~-   90 (902)
T 2oaj_A           29 QNLLAIATVT-------GEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGIYLVVINAK--------DTVYVLSLYSQK-   90 (902)
T ss_dssp             TTEEEEEETT-------SEEEEECSTTCEEEEEC--SSCCCEEEEEEETTTEEEEEETT--------CEEEEEETTTCS-
T ss_pred             CCEEEEEeCC-------CEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCCCEEEEEECc--------CeEEEEECCCCc-
Confidence            4555555431       36778887655432211  11111223333345544444443        378899998876 


Q ss_pred             ccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecC--C-----CCCCCCC--CceEEE
Q 016368          227 DWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMP--E-----GMHAGWN--GPAAST  296 (390)
Q Consensus       227 ~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~--~-----~~~~~~~--~~~~~~  296 (390)
                         -...-..+.  .   -.+++. -+++..+.|.   ....+.+||..+.+-....  .     .......  ..+++.
T Consensus        91 ---~~~~~~~~~--~---V~~v~~sp~g~~l~sgs---~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~  159 (902)
T 2oaj_A           91 ---VLTTVFVPG--K---ITSIDTDASLDWMLIGL---QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW  159 (902)
T ss_dssp             ---EEEEEECSS--C---EEEEECCTTCSEEEEEE---TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred             ---EEEEEcCCC--C---EEEEEECCCCCEEEEEc---CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence               221111111  1   122222 2455555531   2344678888876532110  0     0111111  223332


Q ss_pred             ee-CCeEEEEeCCCCcEEEEECCCCceEEccccc---------------c-cccceeEEEE--CCEEEEEeeCCceEEEE
Q 016368          297 MN-EEELYVVNEGKGRLSKYDADHDWWDEVIELA---------------E-LKGAEKITAA--RGRVCAVCENGERIMVV  357 (390)
Q Consensus       297 ~~-~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p---------------~-~r~~~~~~~~--~g~l~i~g~~~~~v~~~  357 (390)
                      .. ++.++++|+.++.+ .||..+.+-...-...               . .......+.+  +|..++.|+.+..|.+|
T Consensus       160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence            12 34677888888899 9999886543221111               0 0111222233  67777887888899999


Q ss_pred             EcCCC
Q 016368          358 DVLAS  362 (390)
Q Consensus       358 d~~~~  362 (390)
                      |+.+.
T Consensus       239 d~~~g  243 (902)
T 2oaj_A          239 DANSG  243 (902)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            98764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.92  E-value=0.25  Score=45.44  Aligned_cols=110  Identities=12%  Similarity=0.084  Sum_probs=49.0

Q ss_pred             EEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCC--ceE
Q 016368          248 AVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHD--WWD  323 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~--~W~  323 (390)
                      .++.++.+|+.+    ....+.++|.+++  .|+.... .    .....++ .+|.+|+.+..++.++.+|.++.  .|+
T Consensus         5 P~v~~~~v~~gs----~dg~v~a~d~~tG~~~W~~~~~-~----~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~   74 (369)
T 2hz6_A            5 VTLPETLLFVST----LDGSLHAVSKRTGSIKWTLKED-P----VLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTK   74 (369)
T ss_dssp             ---CTTEEEEEE----TTSEEEEEETTTCCEEEEEECC-C----SCCCC------CCEEECTTTCCEEEC-----CCSEE
T ss_pred             CeeeCCEEEEEc----CCCEEEEEECCCCCEEEEecCC-C----ceecceE-cCCCEEEEeCCCCEEEEEECCCCceeee
Confidence            445677888764    3345778998776  5876431 1    1122233 67888888878889999998654  466


Q ss_pred             EcccccccccceeEEE-ECCEEEEEeeCCceEEEEEcCCCCCcceEec
Q 016368          324 EVIELAELKGAEKITA-ARGRVCAVCENGERIMVVDVLASPARAWLVD  370 (390)
Q Consensus       324 ~i~~~p~~r~~~~~~~-~~g~l~i~g~~~~~v~~~d~~~~~~~~W~~~  370 (390)
                      .-...+.... .+.+. .++.||+ |..+..++.+|..+... .|...
T Consensus        75 ~~~~~~~~~~-~sp~~~~~~~v~~-g~~dg~v~a~D~~tG~~-~w~~~  119 (369)
T 2hz6_A           75 LPFTIPELVQ-ASPCRSSDGILYM-GKKQDIWYVIDLLTGEK-QQTLS  119 (369)
T ss_dssp             CSCCHHHHHT-TCSCC-----CCC-CEEEEEEEEECCC----------
T ss_pred             eeccCccccc-cCceEecCCEEEE-EeCCCEEEEEECCCCcE-EEEec
Confidence            4322221111 11122 3455543 34455788888776532 47643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=88.25  E-value=12  Score=32.27  Aligned_cols=150  Identities=4%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++.||++....        ..+..+|+....    ++.++--....    .-+++.. ++.+++.   ..+.....+|+.
T Consensus        38 ~~~L~aV~d~~--------~~I~~ld~~g~v----~~~i~l~g~~D----~EGIa~~~~g~~~vs---~E~~~~l~~~~v   98 (255)
T 3qqz_A           38 SNTLFSTINKP--------AAIVEMTTNGDL----IRTIPLDFVKD----LETIEYIGDNQFVIS---DERDYAIYVISL   98 (255)
T ss_dssp             TTEEEEEEETT--------EEEEEEETTCCE----EEEEECSSCSS----EEEEEECSTTEEEEE---ETTTTEEEEEEE
T ss_pred             CCEEEEEECCC--------CeEEEEeCCCCE----EEEEecCCCCC----hHHeEEeCCCEEEEE---ECCCCcEEEEEc
Confidence            47899986553        378899998665    77764322111    1334433 4555555   223345667766


Q ss_pred             CCCC--eE--ecCCC---CCCCCCCceEEE-eeCCeEEEEeCCCC-cEEEEEC--CCCceEEccc--c---cccccceeE
Q 016368          274 ELDK--WK--EMPEG---MHAGWNGPAAST-MNEEELYVVNEGKG-RLSKYDA--DHDWWDEVIE--L---AELKGAEKI  337 (390)
Q Consensus       274 ~~~~--W~--~~~~~---~~~~~~~~~~~~-~~~g~lyv~gg~~~-~v~~yd~--~~~~W~~i~~--~---p~~r~~~~~  337 (390)
                      ..+.  |.  .....   .+.....-+++. ..+++||+....+. .++.|+-  .+..-+.+..  +   ...+...++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            5443  42  12110   112222345554 23458999876555 8888882  2221222110  0   012233445


Q ss_pred             EEE--CCEEEEEeeCCceEEEEEcCCCC
Q 016368          338 TAA--RGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       338 ~~~--~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      +..  .|++||++.....++.+|.....
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~  206 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGEV  206 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCCE
Confidence            544  78899997777788899877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=88.20  E-value=28  Score=36.50  Aligned_cols=133  Identities=15%  Similarity=0.001  Sum_probs=71.5

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeE-EEeCCCCCeEecCCCCCCCCCCce
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGA-IYNVELDKWKEMPEGMHAGWNGPA  293 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~-~yd~~~~~W~~~~~~~~~~~~~~~  293 (390)
                      .+++++..+..    -..+...+....   ...... +|+.++++.   .....+ +||..+.+-..+..   .......
T Consensus       318 ~i~~~~~~~~~----~~~~~~~~~~~~---~~~~~s-dg~~l~~~s---~~~~l~~~~d~~~~~~~~l~~---~~~~~~~  383 (1045)
T 1k32_A          318 QAFIQDVSGTY----VLKVPEPLRIRY---VRRGGD-TKVAFIHGT---REGDFLGIYDYRTGKAEKFEE---NLGNVFA  383 (1045)
T ss_dssp             EEEEECTTSSB----EEECSCCSCEEE---EEECSS-SEEEEEEEE---TTEEEEEEEETTTCCEEECCC---CCCSEEE
T ss_pred             EEEEEcCCCCc----eEEccCCCcceE---EeeeEc-CCCeEEEEE---CCCceEEEEECCCCCceEecC---Cccceee
Confidence            67788877766    444432221011   111112 555433321   234566 78988876655542   1111223


Q ss_pred             EEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-C---------ceEEEEEcCCC
Q 016368          294 ASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-G---------ERIMVVDVLAS  362 (390)
Q Consensus       294 ~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~---------~~v~~~d~~~~  362 (390)
                      ++...+|+.++++..++.++.||.++.+-..+..-.. .....+... +|+..+++.. +         ..++++|+.+.
T Consensus       384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~-~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC-CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            3333688888888878899999999887665542111 111233333 5664444332 2         48999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=87.59  E-value=24  Score=35.08  Aligned_cols=194  Identities=10%  Similarity=-0.033  Sum_probs=93.2

Q ss_pred             CCCcEEEeCCCCceecCCCCC---CCC-cceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccC
Q 016368          163 LASPLAFNPQSNTWFFGPQLS---IPR-RWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQL  236 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~---~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~  236 (390)
                      ...+++.+...+.++.+-...   ... .......+  +|+..+++....   +.....++++|..++.    .......
T Consensus        97 ~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~---G~~~~~i~v~d~~tg~----~~~~~~~  169 (710)
T 2xdw_A           97 QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS---GSDWVTIKFMKVDGAK----ELPDVLE  169 (710)
T ss_dssp             SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET---TCSCEEEEEEETTTTE----EEEEEEE
T ss_pred             EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC---CCceEEEEEEECCCCC----CCccccc
Confidence            346677776666666442111   111 11122222  566555543322   2223489999999988    6543211


Q ss_pred             CCCCccccceEEEEE-CCEEEEEcccCCC-------------CceeEEEeCCCCCeE--ecCCCCCCCCCCceEEEeeCC
Q 016368          237 KDGRFSREAVEAVGF-KGNLCMVNLKGNG-------------AKDGAIYNVELDKWK--EMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       237 ~~~~~~r~~~~~~~~-~g~lyv~gg~g~~-------------~~~~~~yd~~~~~W~--~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      .. ..    ...+.. +|+.++++.....             ...+.++++.+.+-.  .+-.....+..........+|
T Consensus       170 ~~-~~----~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg  244 (710)
T 2xdw_A          170 RV-KF----SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG  244 (710)
T ss_dssp             EE-CS----CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred             Cc-cc----ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC
Confidence            11 11    122222 5553333222111             123566788776532  121101111111223333566


Q ss_pred             eEEEEeCC-----CCcEEEEECCC------C--ceEEcccccccccceeEEEECCEEEEEeeC---CceEEEEEcCCCCC
Q 016368          301 ELYVVNEG-----KGRLSKYDADH------D--WWDEVIELAELKGAEKITAARGRVCAVCEN---GERIMVVDVLASPA  364 (390)
Q Consensus       301 ~lyv~gg~-----~~~v~~yd~~~------~--~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~---~~~v~~~d~~~~~~  364 (390)
                      +..++...     ...++.+|..+      .  .+..+..-.. .....+..-++.||+.+..   ...++++|+.+...
T Consensus       245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  323 (710)
T 2xdw_A          245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE  323 (710)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            64444432     45899999875      3  5776653211 1112233347788888643   33799999987643


Q ss_pred             cceEe
Q 016368          365 RAWLV  369 (390)
Q Consensus       365 ~~W~~  369 (390)
                      +.|..
T Consensus       324 ~~~~~  328 (710)
T 2xdw_A          324 SKWKV  328 (710)
T ss_dssp             GGCEE
T ss_pred             cccee
Confidence            45774

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=86.81  E-value=21  Score=33.64  Aligned_cols=115  Identities=14%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             ECCEEEEEcccCCCCceeEEEeCCCCCeEe--cCCCCCC-CCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccc
Q 016368          251 FKGNLCMVNLKGNGAKDGAIYNVELDKWKE--MPEGMHA-GWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIE  327 (390)
Q Consensus       251 ~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~--~~~~~~~-~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~  327 (390)
                      .+|++|++     -+...+.+|...+.+..  +...++. +..--++.. .++++|++-|  +.+|+|+... ..+.+..
T Consensus       268 ~~G~tYFF-----Kg~~yWR~~~~~~~~~p~~Is~~WpglP~~IDAAf~-~~~~~yfFkG--~~yw~f~~~~-g~~~~~G  338 (460)
T 1qhu_A          268 NHGATYVF-----SGSHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFS-WEDKLYLIQD--TKVYVFLTKG-GYTLVNG  338 (460)
T ss_dssp             TTCCEEEE-----ETTEEEECTTGGGCCCCEEGGGTCTTSCSSCSEEEE-ETTEEEEEET--TEEEEEECSB-SCEECTT
T ss_pred             CCCeEEEE-----eCCEEEEEecCCCCcCccchhhhccCCCCCCcEEEE-ECCeEEEEeC--CEEEEEeCCC-CceecCC
Confidence            47899998     34445566654432211  1111211 111223333 6899999965  5789998653 1222221


Q ss_pred             --------cccccc------ceeEEE-ECCEEEEEeeCCceEEEEEcCCCCCcceE--ecCCCCee
Q 016368          328 --------LAELKG------AEKITA-ARGRVCAVCENGERIMVVDVLASPARAWL--VDPPRGFQ  376 (390)
Q Consensus       328 --------~p~~r~------~~~~~~-~~g~l~i~g~~~~~v~~~d~~~~~~~~W~--~~~p~g~~  376 (390)
                              +..+..      ..++.. ..+++|++ . ++..|.||....+...+.  ...|...+
T Consensus       339 yPK~I~~~lGlp~~~~~~~IDAA~~~~~~~ktyfF-k-G~~ywryd~~~~Pr~i~~~~~gi~~~vd  402 (460)
T 1qhu_A          339 YPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIM-A-GRRLWWLDLKSGAQATWTELPWPHEKVD  402 (460)
T ss_dssp             CCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEE-E-TTEEEEEEGGGGGGCCCEEECCSCSCCS
T ss_pred             CCeEHHHhccCCCccccCcccEEEEeCCCCEEEEE-E-CCEEEEEECCCCccchhhhCCCCCCCcC
Confidence                    111111      222222 36899999 3 358999999876544443  23455543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=86.03  E-value=8  Score=36.92  Aligned_cols=150  Identities=14%  Similarity=0.096  Sum_probs=84.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE--------ECC-EEEEEcccCC--
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG--------FKG-NLCMVNLKGN--  263 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~--------~~g-~lyv~gg~g~--  263 (390)
                      ++.||++-..        ...+.+.|++++.    -+.+.........+ ....++        .+| .||+..-.+.  
T Consensus       151 ~~~Lyv~~~~--------~~~i~~ID~~~~~----v~~l~~~~~~~~~~-p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          151 KDHLYICYDG--------HKAIQLIDLKNRM----LSSPLNINTIPTNR-IRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             EEEEEEEEET--------EEEEEEEETTTTE----EEEEECCTTSSCSB-EEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCEEEEEECC--------CCeEEEEECCCCE----EEEEEccCccccCC-CcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            3679988533        2468999999988    77665543322211 133333        244 4888742210  


Q ss_pred             -CCceeEEEeCCC-CCeE------ecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECC-------CCc-eEE--
Q 016368          264 -GAKDGAIYNVEL-DKWK------EMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDAD-------HDW-WDE--  324 (390)
Q Consensus       264 -~~~~~~~yd~~~-~~W~------~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~-------~~~-W~~--  324 (390)
                       ....+.+++... +.|.      .++. .   .....+++ ..++.||+.....+.+++||++       +.. |+.  
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAA-Y---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEE-E---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             ccCceEEEEecCCCCceeecccceeecc-C---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence             123356777554 3553      2221 1   12234443 1268999999888899999997       443 543  


Q ss_pred             ---------cccccccccceeEEEE-CCE-EEEEeeCCceEEEEEcCC
Q 016368          325 ---------VIELAELKGAEKITAA-RGR-VCAVCENGERIMVVDVLA  361 (390)
Q Consensus       325 ---------i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~  361 (390)
                               +..++.....+.++.. +|. |||.=.....|+.+|...
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                     2222222234456655 454 888755567888876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=85.97  E-value=14  Score=37.16  Aligned_cols=148  Identities=9%  Similarity=-0.025  Sum_probs=79.2

Q ss_pred             CCCcEEEeCCCC--c-eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCC--CccccccEEcccCC
Q 016368          163 LASPLAFNPQSN--T-WFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKS--DREDWKWEKKAQLK  237 (390)
Q Consensus       163 ~~~~~~~dp~t~--~-W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t--~~~~~~W~~~~~~~  237 (390)
                      .++++++|..+.  + |+.+.......... ....++.||+....+.     ....+.++|..+  ..    |+.+-+-.
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~-----~~~~l~~~d~~~~~~~----~~~l~~~~  362 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA-----PLKKIVRVDLSGSTPR----FDTVVPES  362 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC-----TTCEEEEEECSSSSCE----EEEEECCC
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC-----CCCEEEEEeCCCCccc----cEEEecCC
Confidence            467899998877  6 77664332222222 2234677887754432     345789999887  46    88775432


Q ss_pred             CCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC-eEEEEeC-C--CCcEE
Q 016368          238 DGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE-ELYVVNE-G--KGRLS  313 (390)
Q Consensus       238 ~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g-~lyv~gg-~--~~~v~  313 (390)
                      ...    .......++++++.... .+...+.++|+..+.-+.+..  +.......+....++ .|++... .  .+.++
T Consensus       363 ~~~----l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          363 KDN----LESVGIAGNRLFASYIH-DAKSQVLAFDLDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             SSE----EEEEEEEBTEEEEEEEE-TTEEEEEEEETTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred             CCe----EEEEEEECCEEEEEEEE-CCEEEEEEEeCCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence            211    12334457787776321 123445678875543343332  111111111111234 3544432 1  23899


Q ss_pred             EEECCCCceEEccc
Q 016368          314 KYDADHDWWDEVIE  327 (390)
Q Consensus       314 ~yd~~~~~W~~i~~  327 (390)
                      .||..+.+.+.+..
T Consensus       436 ~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          436 ALDPATAKTTPWEP  449 (741)
T ss_dssp             EEETTTTEEEECSC
T ss_pred             EEECCCCcEEEEec
Confidence            99999888766643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=85.87  E-value=20  Score=32.54  Aligned_cols=64  Identities=8%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccc-----------cccceeEEE--ECCEEEEEeeC---------CceEE
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAE-----------LKGAEKITA--ARGRVCAVCEN---------GERIM  355 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~-----------~r~~~~~~~--~~g~l~i~g~~---------~~~v~  355 (390)
                      .++.+|++. ..+.+++.|..+..-..+...+.           +.....+..  -++++|+....         .+.|+
T Consensus       223 ~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          223 KSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             cCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            456666655 45678888886553222221110           111111222  25789997532         35799


Q ss_pred             EEEcCCC
Q 016368          356 VVDVLAS  362 (390)
Q Consensus       356 ~~d~~~~  362 (390)
                      ++|..+.
T Consensus       302 VID~~t~  308 (373)
T 2mad_H          302 SVTGLVG  308 (373)
T ss_pred             EEECCCC
Confidence            9999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=85.51  E-value=20  Score=32.15  Aligned_cols=144  Identities=11%  Similarity=0.010  Sum_probs=77.3

Q ss_pred             CeEEEEECCCCccccccEEcccCCCC---Cccc-cceEEEE----ECCEEEEEccc-------C---CCCceeEEEeCC-
Q 016368          214 RSMKKWDLKSDREDWKWEKKAQLKDG---RFSR-EAVEAVG----FKGNLCMVNLK-------G---NGAKDGAIYNVE-  274 (390)
Q Consensus       214 ~~~~~yd~~t~~~~~~W~~~~~~~~~---~~~r-~~~~~~~----~~g~lyv~gg~-------g---~~~~~~~~yd~~-  274 (390)
                      ..+.+||+..+.    =.++ ..+..   .... ...+...    -+++|+++.-.       |   .+...+.+||+. 
T Consensus        35 g~V~~~~~~~~~----~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~  109 (334)
T 2p9w_A           35 GRIEVYNPKTQS----HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL  109 (334)
T ss_dssp             TEEEEECTTTCC----EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC
T ss_pred             CEEEEEcCCCCe----EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc
Confidence            478889998665    3334 22210   0000 1133344    25788886311       0   013446789987 


Q ss_pred             --CC--CeEec-CCCCCC-------CCC-CceEEEeeCCeEEEEeCCC-CcEEEEECCCCc---eEEcccccc-ccccee
Q 016368          275 --LD--KWKEM-PEGMHA-------GWN-GPAASTMNEEELYVVNEGK-GRLSKYDADHDW---WDEVIELAE-LKGAEK  336 (390)
Q Consensus       275 --~~--~W~~~-~~~~~~-------~~~-~~~~~~~~~g~lyv~gg~~-~~v~~yd~~~~~---W~~i~~~p~-~r~~~~  336 (390)
                        ++  .|..- ......       ... ..-+++.-+|.+||.+... +.|+++++....   |-.-..... .....+
T Consensus       110 ~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nG  189 (334)
T 2p9w_A          110 SENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSG  189 (334)
T ss_dssp             CTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSE
T ss_pred             CCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcce
Confidence              33  45532 110000       111 2234434579999988877 899999998653   432221111 123446


Q ss_pred             EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          337 ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       337 ~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.. +|+++|+-..+..++.+|+.+.
T Consensus       190 Iv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          190 ITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            7777 5544444344789999998853

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=85.48  E-value=31  Score=34.27  Aligned_cols=150  Identities=9%  Similarity=0.015  Sum_probs=79.7

Q ss_pred             CCcEEEeCCCC--ceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSN--TWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ++++++|..+.  +++.+..-..... ......+++||+....+.     ....+.++|..+... -.|+.+-+-..  .
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~-----~~~~l~~~d~~~~~~-~~~~~l~~~~~--~  329 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA-----PNRRLVTVDAANPGP-AHWRDLIPERQ--Q  329 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC-----TTCEEEEEETTSCCG-GGCEEEECCCS--S
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC-----CCCEEEEEeCCCCCc-cccEEEecCCC--C
Confidence            68899998765  5666543222111 123345789998876532     345788999876420 12776543222  1


Q ss_pred             cccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeC-CeEEEEeC---CCCcEEEEEC
Q 016368          242 SREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNE-EELYVVNE---GKGRLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-g~lyv~gg---~~~~v~~yd~  317 (390)
                         .......++.|++.. ...+...+.++|+..+..+.+..  +.......+....+ +.|++...   ..+.++.||.
T Consensus       330 ---~~~~s~~g~~lv~~~-~~~g~~~l~~~d~~g~~~~~l~~--p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          330 ---VLTVHSGSGYLFAEY-MVDATARVEQFDYEGKRVREVAL--PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ---CEEEEEETTEEEEEE-EETTEEEEEEECTTSCEEEEECC--SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             ---EEEEEEECCEEEEEE-EECCeeEEEEEECCCCeeEEeec--CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence               123444556665542 11223456788888665555543  11111011110113 44554432   1258999999


Q ss_pred             CCCceEEcccc
Q 016368          318 DHDWWDEVIEL  328 (390)
Q Consensus       318 ~~~~W~~i~~~  328 (390)
                      .+.+.+.+...
T Consensus       404 ~~g~~~~l~~~  414 (693)
T 3iuj_A          404 KSGAISLYRAS  414 (693)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCeEEEEEeC
Confidence            98887776543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.32  E-value=30  Score=33.99  Aligned_cols=146  Identities=11%  Similarity=0.060  Sum_probs=86.8

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE--ECCEEEEEcccCCCCceeEEEe
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG--FKGNLCMVNLKGNGAKDGAIYN  272 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd  272 (390)
                      +++||+.-        .....+..+++....    .+.+........    .+.++  .++.||+.   ..+...+++.+
T Consensus       360 ~~~ly~sD--------~~~~~I~r~~~~g~~----~~~v~~~~~~~p----~GlAvD~~~~~lY~t---D~~~~~I~v~~  420 (619)
T 3s94_A          360 EGYIYWTD--------DEVRAIRRSFIDGSG----SQFVVTAQIAHP----DGIAVDWVARNLYWT---DTGTDRIEVTR  420 (619)
T ss_dssp             TTEEEEEE--------TTTTEEEEEETTSCS----CEEEECSSCSCC----CEEEEETTTTEEEEE---ETTTTEEEEEE
T ss_pred             CCeEEEEe--------CCCCeEEEEEcCCCc----cEEEEECCCCCc----CceEEecccCcEEEE---eCCCCcEEEEe
Confidence            68999873        234578889988766    666543222111    34554  47899998   33456788898


Q ss_pred             CCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeC-CCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEE
Q 016368          273 VELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNE-GKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAV  347 (390)
Q Consensus       273 ~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg-~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~  347 (390)
                      +....-+.+..   .....+ .+++ ..+|.||+..- ....|++.++....=..+..- ......++++-  +++||+.
T Consensus       421 ~~G~~~~~l~~---~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-~l~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          421 LNGTMRKILIS---EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             TTSCSCEEEEC---TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCeEEEEEE---CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC-CCCCCeeeEEcccCCEEEEE
Confidence            87654333322   112223 3333 12599999874 346899998875433333211 12233455554  7889988


Q ss_pred             eeCCceEEEEEcCCCC
Q 016368          348 CENGERIMVVDVLASP  363 (390)
Q Consensus       348 g~~~~~v~~~d~~~~~  363 (390)
                      =...+.|..+|+....
T Consensus       497 D~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          497 DAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             ETTTTEEEEEESSSCC
T ss_pred             ECCCCEEEEEecCCCc
Confidence            5455678888876553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=85.13  E-value=24  Score=32.83  Aligned_cols=63  Identities=8%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             CCeEEEEeC---------CCCcEEEEECCCCceEEcccccccccceeEEEE-CC--EEEEEeeCCceEEEEEcCCCC
Q 016368          299 EEELYVVNE---------GKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RG--RVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       299 ~g~lyv~gg---------~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g--~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      ++++|+...         ..+.+.++|..+  ++.+..++......++... +|  ++|+.....+.|.++|+.+..
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T--~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAET--GERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECCC--CeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            478998743         124799999876  4566666655555566655 44  466664467899999998763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=84.92  E-value=19  Score=31.52  Aligned_cols=210  Identities=8%  Similarity=-0.044  Sum_probs=97.9

Q ss_pred             ceeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCcee
Q 016368           99 SMEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWF  177 (390)
Q Consensus        99 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~  177 (390)
                      ...++.+|..+++-..+   ..  . .               ..... ++..+++......  .....++++|..+++.+
T Consensus        42 ~~~l~~~d~~~~~~~~l---~~--~-~---------------~~~~SpDg~~la~~~~~~~--~~~~~l~~~~~~~g~~~   98 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI---EN--A-T---------------MPRISPDGKKIAFMRANEE--KKVSEIWVADLETLSSK   98 (347)
T ss_dssp             EEEEEEEETTTCCEEEE---ES--C-E---------------EEEECTTSSEEEEEEEETT--TTEEEEEEEETTTTEEE
T ss_pred             cceEEEEeCCCCceEEc---cc--C-C---------------CeEECCCCCEEEEEEeccC--CCcceEEEEECCCCceE
Confidence            34588888888766555   11  0 0               22223 3444444333221  12346899999888766


Q ss_pred             cCCCCCCCCcceEEEEE-CCE-EEEEeccCCCC-------------C-----CCccCeEEEEECCCCcccccc-EEcccC
Q 016368          178 FGPQLSIPRRWCAMGSV-GGV-VYVASGVGAHY-------------R-----GDVARSMKKWDLKSDREDWKW-EKKAQL  236 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~-------------~-----~~~~~~~~~yd~~t~~~~~~W-~~~~~~  236 (390)
                      .+...+.   ....... +++ |++........             .     ......++++|..++.    . +.+.. 
T Consensus        99 ~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----~~~~l~~-  170 (347)
T 2gop_A           99 KILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----VIEEFEK-  170 (347)
T ss_dssp             EEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----EEEEEEE-
T ss_pred             EEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----EEeeecC-
Confidence            6543322   1222222 554 44443210000             0     0113578999998887    6 55544 


Q ss_pred             CCCCccccceEEEE-ECCEEEEEcccCCC------CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCe-EEEEeCC
Q 016368          237 KDGRFSREAVEAVG-FKGNLCMVNLKGNG------AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEE-LYVVNEG  308 (390)
Q Consensus       237 ~~~~~~r~~~~~~~-~~g~lyv~gg~g~~------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~-lyv~gg~  308 (390)
                      + . .    ...+. -+| +++.+.....      ...+..+|  +++++.+...    ...... . .+|+ |++.+..
T Consensus       171 ~-~-~----~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~-s-pdg~~l~~~~~~  235 (347)
T 2gop_A          171 P-R-F----SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAV-D-SDGERILLYGKP  235 (347)
T ss_dssp             E-T-T----CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEE-E-ECSSCEEEEECC
T ss_pred             C-C-c----ccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC----cceeeE-C-CCCCEEEEEEcc
Confidence            2 1 1    22333 355 5554322111      22455667  6666655441    111122 3 5665 4444422


Q ss_pred             -------CCcEEEEECCCCceEEccccccccccee-EEEECCEEEEEeeCCceEEE-EE
Q 016368          309 -------KGRLSKYDADHDWWDEVIELAELKGAEK-ITAARGRVCAVCENGERIMV-VD  358 (390)
Q Consensus       309 -------~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~~g~l~i~g~~~~~v~~-~d  358 (390)
                             ...++.+|  +.++..+..-.. ..... +...++ +++.+..+..+.+ ++
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~-~~~~~~~~~sdg-~~~~~~~~~~~~l~~~  290 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVD-RGVGQAKIKDGK-VYFTLFEEGSVNLYIW  290 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCC-SEEEEEEEETTE-EEEEEEETTEEEEEEE
T ss_pred             ccCCccccceEEEEC--CCceEeccccCC-cccCCccEEcCc-EEEEEecCCcEEEEEc
Confidence                   23799999  566666543211 11111 222244 6666544433333 55

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.03  E-value=2.1  Score=38.82  Aligned_cols=70  Identities=11%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             eCCeEEEEe-CCCCcEEEEECCCCceEEcccccccccc------eeEEE-------ECCEEEEEeeCCceEEEEEcCCCC
Q 016368          298 NEEELYVVN-EGKGRLSKYDADHDWWDEVIELAELKGA------EKITA-------ARGRVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       298 ~~g~lyv~g-g~~~~v~~yd~~~~~W~~i~~~p~~r~~------~~~~~-------~~g~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      .++.+|++. ..+|.++.||.++..|+.-..++.....      ...++       .+|.||+ |..+..++.+|..+..
T Consensus        54 ~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~-Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           54 ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYT-GSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEE-CEEEEEEEEEETTTCC
T ss_pred             cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEE-EecCCEEEEEECCCCc
Confidence            366777776 4688999999988776643344432211      11222       3444554 4666689999988764


Q ss_pred             CcceEe
Q 016368          364 ARAWLV  369 (390)
Q Consensus       364 ~~~W~~  369 (390)
                      . .|+.
T Consensus       133 ~-~W~~  137 (339)
T 2be1_A          133 I-ISAF  137 (339)
T ss_dssp             E-EEEE
T ss_pred             E-EEEE
Confidence            2 5774

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=83.64  E-value=42  Score=35.73  Aligned_cols=136  Identities=12%  Similarity=0.022  Sum_probs=83.7

Q ss_pred             ccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC
Q 016368          212 VARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG  291 (390)
Q Consensus       212 ~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  291 (390)
                      ..-.+.+|+...++    .+.+......-.   ..+.+.++|++.+-     -+....+||...++--.... ...+...
T Consensus       862 ~~Gri~vf~v~~~k----L~lv~~~~v~g~---v~al~~~~g~Lla~-----ig~~l~vy~l~~~~~L~~~~-~~~~~i~  928 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGK----LQTVAEKEVKGA---VYSMVEFNGKLLAS-----INSTVRLYEWTTEKELRTEC-NHYNNIM  928 (1158)
T ss_dssp             CCEEEEEEEEETTE----EEEEEEEEESSC---EEEEEEETTEEEEE-----ETTEEEEEEECTTSCEEEEE-EECCCSC
T ss_pred             CceEEEEEEEECCE----EEEEEEEEcCCc---CEEEeeeCCEEEEE-----cCCEEEEEECCCCceEEEEe-eccccEE
Confidence            34568888887666    777765443322   36777899987665     45678899987664222111 0011111


Q ss_pred             c-eEEEeeCCeEEEEeCCCC-cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCC
Q 016368          292 P-AASTMNEEELYVVNEGKG-RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLA  361 (390)
Q Consensus       292 ~-~~~~~~~g~lyv~gg~~~-~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~  361 (390)
                      . .+.+ .++.|++-.-..+ .+..|++..++-..++.-..+++..++..+++.-++.+....+++++....
T Consensus       929 ~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          929 ALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             EEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            1 2223 6777766665555 778899999999998877777877777666544445445555676665433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=83.25  E-value=22  Score=32.38  Aligned_cols=62  Identities=13%  Similarity=0.108  Sum_probs=42.7

Q ss_pred             CCeEEEEeC---C-----CCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEee-CCceEEEEEcCCC
Q 016368          299 EEELYVVNE---G-----KGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCE-NGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg---~-----~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~-~~~~v~~~d~~~~  362 (390)
                      ++++|+...   .     .+.+.++|..+.  +.+..++.....+++... +|+ +|+... ..+.|.++|+.+.
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCC--eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            467887533   1     235669998875  456666655556666665 554 888767 5789999999876

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=81.52  E-value=20  Score=29.27  Aligned_cols=63  Identities=6%  Similarity=0.065  Sum_probs=38.0

Q ss_pred             ECCEEEEEcccCCCCceeEEEeCCCCCeEe-----cCCCC-CCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          251 FKGNLCMVNLKGNGAKDGAIYNVELDKWKE-----MPEGM-HAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       251 ~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-----~~~~~-~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      .+|++|++     -+...+.||..+++=..     +...+ ..+....++.. .+|.+|++-|  ...++||..+..
T Consensus       108 ~~g~~yfF-----kg~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~idaa~~-~~g~~Yffkg--~~y~~~~~~~~~  176 (195)
T 1itv_A          108 GRGKMLLF-----SGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQ-FREKAYFCQD--RFYWRVSSRSEL  176 (195)
T ss_dssp             STTEEEEE-----ETTEEEEEETTTTEECGGGCEEHHHHSTTSCSSCSEEEE-ETTEEEEEET--TEEEEEECCTTC
T ss_pred             CCCeEEEE-----eCCEEEEEeCCcccccCCCccChhhcCCCCCCCCCEEEE-eCCeEEEEeC--CEEEEEECCccE
Confidence            47899999     45567889987643110     10001 11112233443 6899999976  478999987654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=80.90  E-value=30  Score=30.70  Aligned_cols=126  Identities=13%  Similarity=0.092  Sum_probs=67.9

Q ss_pred             cEEcccCCCCCccccceEEEEE-CCEEEEEccc-CCCCceeEEEeCCCCCeEecCCCCCC---CCCC-ceEEEeeCCeEE
Q 016368          230 WEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEGMHA---GWNG-PAASTMNEEELY  303 (390)
Q Consensus       230 W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~~~~---~~~~-~~~~~~~~g~ly  303 (390)
                      ++.+.... . .   ...+++. +|++|+...+ +.+...+..++  +.+-...+.....   .... ..+++.-+|+||
T Consensus         9 ~~~v~~~~-~-~---p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~   81 (343)
T 2qe8_A            9 LEVVAELS-L-A---PGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVW   81 (343)
T ss_dssp             CEEEEEES-S-C---EEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEE
T ss_pred             eEEEEEcC-C-C---cceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEE
Confidence            66665544 1 1   1444444 7899987321 11113456666  4443333221011   1112 233332358999


Q ss_pred             EEeCC-----CCcEEEEECCCCceEEccccccc-----ccceeEEEE--CCEEEEEee---CCceEEEEEcCCC
Q 016368          304 VVNEG-----KGRLSKYDADHDWWDEVIELAEL-----KGAEKITAA--RGRVCAVCE---NGERIMVVDVLAS  362 (390)
Q Consensus       304 v~gg~-----~~~v~~yd~~~~~W~~i~~~p~~-----r~~~~~~~~--~g~l~i~g~---~~~~v~~~d~~~~  362 (390)
                      ++...     ...+++||+++++-...-.++..     .....+++-  ++.+||...   ....+.++|+.+.
T Consensus        82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A           82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred             EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence            98743     46899999998874332223211     122455555  578998754   4568999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=80.58  E-value=15  Score=32.86  Aligned_cols=68  Identities=16%  Similarity=0.067  Sum_probs=38.7

Q ss_pred             eEEEeeCCe-EEEEeCCCCcEEEEECC-CCceEEccccc--c-cccceeEEEE-CC-EEEEEeeCCceEEEEEcC
Q 016368          293 AASTMNEEE-LYVVNEGKGRLSKYDAD-HDWWDEVIELA--E-LKGAEKITAA-RG-RVCAVCENGERIMVVDVL  360 (390)
Q Consensus       293 ~~~~~~~g~-lyv~gg~~~~v~~yd~~-~~~W~~i~~~p--~-~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~  360 (390)
                      .++...+|+ ||+.....+.+.+||.. +.+...+..+.  . ......++.. +| .||+.+..++.+.+|++.
T Consensus       149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            333334665 66655445689999987 67665554332  1 2223334444 44 577775556677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-05

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 26/69 (37%)

Query: 162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDL 221
           +L+   A+NP + TW     L +PR   A   VGG++Y   G      G+   S      
Sbjct: 17  SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 76

Query: 222 KSDREDWKW 230
               +    
Sbjct: 77  PMTNQWSPC 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.11
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.07
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.52
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.09
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.86
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.78
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.78
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.71
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.58
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.42
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.26
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.26
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.11
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.07
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.04
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.42
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.14
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.64
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.19
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	93.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	93.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.74
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	92.18
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	92.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	91.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	91.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	91.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.37
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	89.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.64
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.37
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	88.33
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	87.67
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	87.5
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.23
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.1
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	85.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	85.31
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	84.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	83.64
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	81.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	81.61
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	80.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	80.78

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=247.30  Aligned_cols=250  Identities=18%  Similarity=0.302  Sum_probs=212.5

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCC--CCCCCCCcEEEeCCCCcee
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPH--FLPALASPLAFNPQSNTWF  177 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~--~~~~~~~~~~~dp~t~~W~  177 (390)
                      ..+++||+.+++|.+++++|. +|..              ++++++.+.+|++||....  .....+++++||+.+++|+
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~-~R~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQV-PRSG--------------LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBS--------------CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             ceEEEEECCCCeEEECCCCCC-ccce--------------eEEEEECCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence            468999999999999999998 7754              1677778899999997421  2245789999999999999


Q ss_pred             cCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEE
Q 016368          178 FGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCM  257 (390)
Q Consensus       178 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv  257 (390)
                      .+++++.+|.+|++++++++||++||...   ....+..+.||+.++.    |...+.++..+.   .++++..++++|+
T Consensus        84 ~~~~~p~~r~~~~~~~~~~~i~~~gg~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~r~---~~~~~~~~~~~~~  153 (288)
T d1zgka1          84 PCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----WHLVAPMLTRRI---GVGVAVLNRLLYA  153 (288)
T ss_dssp             ECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEE
T ss_pred             ccccccceecceeccccceeeEEecceec---ccccceeeeeccccCc----cccccccccccc---cceeeeeeecceE
Confidence            99999999999999999999999999876   5677889999999999    999999888776   6888999999999


Q ss_pred             EcccCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccc
Q 016368          258 VNLKGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAE  330 (390)
Q Consensus       258 ~gg~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~  330 (390)
                      +||....  ..+.+.||+.+++|...+. .+..+..+++++ .+++|+++||.+.     ..+.||..+++|..++++|.
T Consensus       154 ~GG~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~  231 (288)
T d1zgka1         154 VGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH  231 (288)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred             ecCcccccccceEEEeeccccccccccc-cccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccC
Confidence            9876332  3567899999999999988 667777788887 9999999999654     88999999999999999999


Q ss_pred             cccceeEEEECCEEEEEeeCC-----ceEEEEEcCCCCCcceEe--cCCCCeeEEE
Q 016368          331 LKGAEKITAARGRVCAVCENG-----ERIMVVDVLASPARAWLV--DPPRGFQVVA  379 (390)
Q Consensus       331 ~r~~~~~~~~~g~l~i~g~~~-----~~v~~~d~~~~~~~~W~~--~~p~g~~~~~  379 (390)
                      +|..++++.++|+|||+|+.+     +++++||+.++   .|+.  .+|.+...++
T Consensus       232 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~R~~~~  284 (288)
T d1zgka1         232 RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD---TWSEVTRMTSGRSGVG  284 (288)
T ss_dssp             CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSCCBSCE
T ss_pred             cccceEEEEECCEEEEEecCCCCeecceEEEEECCCC---EEEECCCCCCCcEeEE
Confidence            999999999999999998642     36899999998   8983  4666643333

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-26  Score=207.17  Aligned_cols=211  Identities=14%  Similarity=0.305  Sum_probs=183.6

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ..+++||+.+++|..++++|. +|..              +.++..++.+|++||....  ...+++++||+.+++|...
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~-~r~~--------------~~~~~~~~~i~~~gg~~~~--~~~~~~~~~~~~~~~~~~~  132 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSV-PRNR--------------IGVGVIDGHIYAVGGSHGC--IHHNSVERYEPERDEWHLV  132 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBT--------------CEEEEETTEEEEECCEETT--EECCCEEEEETTTTEEEEC
T ss_pred             chhhhcccccccccccccccc-eecc--------------eeccccceeeEEecceecc--cccceeeeeccccCccccc
Confidence            468999999999999999988 7754              1677788899998887655  5678899999999999999


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEc
Q 016368          180 PQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVN  259 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~g  259 (390)
                      +.++.+|..++++++++++|++||...   ......++.||+.+++    |...+..+..+.   .++++..++++|++|
T Consensus       133 ~~~~~~r~~~~~~~~~~~~~~~GG~~~---~~~~~~~~~~d~~~~~----~~~~~~~~~~~~---~~~~~~~~~~i~i~G  202 (288)
T d1zgka1         133 APMLTRRIGVGVAVLNRLLYAVGGFDG---TNRLNSAECYYPERNE----WRMITAMNTIRS---GAGVCVLHNCIYAAG  202 (288)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCS---SCBCCCEEEEETTTTE----EEECCCCSSCCB---SCEEEEETTEEEEEC
T ss_pred             cccccccccceeeeeeecceEecCccc---ccccceEEEeeccccc----cccccccccccc---cccccceeeeEEEec
Confidence            999999999999999999999999876   4567789999999999    999988877665   588899999999998


Q ss_pred             ccCCC--CceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----cEEEEECCCCceEEcccccccc
Q 016368          260 LKGNG--AKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----RLSKYDADHDWWDEVIELAELK  332 (390)
Q Consensus       260 g~g~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----~v~~yd~~~~~W~~i~~~p~~r  332 (390)
                      |....  ..+...||..+++|+.+++ ++.+|..+++++ ++|+||++||.++     ++++||+++++|+++..||.+|
T Consensus       203 G~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         203 GYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             CccccccccceeeeeecceeeecccC-ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCc
Confidence            65322  3466899999999999998 888999999887 9999999999654     7999999999999999999999


Q ss_pred             cceeEEE
Q 016368          333 GAEKITA  339 (390)
Q Consensus       333 ~~~~~~~  339 (390)
                      ..|++++
T Consensus       281 ~~~~~~~  287 (288)
T d1zgka1         281 SGVGVAV  287 (288)
T ss_dssp             BSCEEEE
T ss_pred             EeEEEEE
Confidence            9888765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=3.4e-25  Score=207.51  Aligned_cols=235  Identities=10%  Similarity=0.106  Sum_probs=169.3

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG  179 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~  179 (390)
                      ....+||+.+++|..+++++. ++..  +++          ..+...++.++++|+.     ..+.+.+||+.+++|+.+
T Consensus        52 ~~~~~yd~~t~~w~~~~~~~~-~~~~--~~~----------~~~~~~~g~i~v~Gg~-----~~~~~~~yd~~~~~w~~~  113 (387)
T d1k3ia3          52 TLTSSWDPSTGIVSDRTVTVT-KHDM--FCP----------GISMDGNGQIVVTGGN-----DAKKTSLYDSSSDSWIPG  113 (387)
T ss_dssp             EEEEEECTTTCCBCCCEEEEC-SCCC--SSC----------EEEECTTSCEEEECSS-----STTCEEEEEGGGTEEEEC
T ss_pred             eEEEEEECCCCcEeecCCCCC-Cccc--cee----------EEEEecCCcEEEeecC-----CCcceeEecCccCccccc
Confidence            457899999999999877666 4422  221          3444455555555542     236789999999999999


Q ss_pred             CCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc----------------
Q 016368          180 PQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS----------------  242 (390)
Q Consensus       180 ~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~----------------  242 (390)
                      +.|+.+|.+|+++++ +++||++||....  ....+++++||+.+++    |+.++.+......                
T Consensus       114 ~~~~~~r~~~~~~~~~dG~v~v~GG~~~~--~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (387)
T d1k3ia3         114 PDMQVARGYQSSATMSDGRVFTIGGSWSG--GVFEKNGEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWL  187 (387)
T ss_dssp             CCCSSCCSSCEEEECTTSCEEEECCCCCS--SSCCCCEEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred             ccccccccccceeeecCCceeeecccccc--ccccceeeeecCCCCc----eeecCCCcccccccccccceeeccceeEE
Confidence            999999999998887 6899999998653  5677899999999999    9987654321100                


Q ss_pred             --------------------------------------------ccceEEEE--ECCEEEEEcccCCCC-----ceeEEE
Q 016368          243 --------------------------------------------REAVEAVG--FKGNLCMVNLKGNGA-----KDGAIY  271 (390)
Q Consensus       243 --------------------------------------------r~~~~~~~--~~g~lyv~gg~g~~~-----~~~~~y  271 (390)
                                                                  +...++..  .++++|++||...+.     .....+
T Consensus       188 ~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~  267 (387)
T d1k3ia3         188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII  267 (387)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred             EEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecc
Confidence                                                        00011111  368899998753221     112222


Q ss_pred             -----eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-----------cEEEEECCCCceEEcccccccccce
Q 016368          272 -----NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-----------RLSKYDADHDWWDEVIELAELKGAE  335 (390)
Q Consensus       272 -----d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-----------~v~~yd~~~~~W~~i~~~p~~r~~~  335 (390)
                           +...++|+.+.. ++.+|..+++++..+|+||++||...           .+++||+++++|+++++++.+|..|
T Consensus       268 ~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~H  346 (387)
T d1k3ia3         268 TLGEPGTSPNTVFASNG-LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH  346 (387)
T ss_dssp             ECCSTTSCCEEEECTTC-CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred             cccccccCCCceeeccc-cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccce
Confidence                 334557888888 88899888887734889999999431           5789999999999999999999988


Q ss_pred             eEEEE--CCEEEEEeeCC--------ceEEEEEc
Q 016368          336 KITAA--RGRVCAVCENG--------ERIMVVDV  359 (390)
Q Consensus       336 ~~~~~--~g~l~i~g~~~--------~~v~~~d~  359 (390)
                      +.+++  +|+|||+|++.        .++.+||+
T Consensus       347 s~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P  380 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  380 (387)
T ss_dssp             EEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence            87766  89999998641        25677774

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.87  E-value=6.2e-22  Score=185.08  Aligned_cols=230  Identities=11%  Similarity=0.113  Sum_probs=161.4

Q ss_pred             CCCCCceeCCCCCCCCCcccccccccccccCCCceEEeecCeEEEEEeecCCC----CCCCCCcEEEeCCCCceecCCCC
Q 016368          107 PISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGVRNNLVLIAATTPHF----LPALASPLAFNPQSNTWFFGPQL  182 (390)
Q Consensus       107 ~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~----~~~~~~~~~~dp~t~~W~~~~~~  182 (390)
                      |..++|...+++|. .+.+              .+++..++++|++||.....    ......+++|||.+++|+.++++
T Consensus         6 p~~g~W~~~~~~p~-~~~~--------------~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~   70 (387)
T d1k3ia3           6 PGLGRWGPTIDLPI-VPAA--------------AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT   70 (387)
T ss_dssp             TTSCEEEEEEECSS-CCSE--------------EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred             CCCCccCCcCCCCc-cccE--------------EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC
Confidence            66788999888887 4432              03334467888888864321    12233478999999999999888


Q ss_pred             CCCCcce--EEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEE
Q 016368          183 SIPRRWC--AMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMV  258 (390)
Q Consensus       183 ~~~r~~~--~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~  258 (390)
                      +.+|..+  +.+++ +++||++||.+.       +++++||+.+++    |+.++.|+.++.   .++++++ ||++|++
T Consensus        71 ~~~~~~~~~~~~~~~~g~i~v~Gg~~~-------~~~~~yd~~~~~----w~~~~~~~~~r~---~~~~~~~~dG~v~v~  136 (387)
T d1k3ia3          71 VTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDS----WIPGPDMQVARG---YQSSATMSDGRVFTI  136 (387)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTE----EEECCCCSSCCS---SCEEEECTTSCEEEE
T ss_pred             CCCcccceeEEEEecCCcEEEeecCCC-------cceeEecCccCc----cccccccccccc---ccceeeecCCceeee
Confidence            8777554  33333 789999998764       478999999999    999999998876   5666665 7899999


Q ss_pred             cccCC---CCceeEEEeCCCCCeEecCCCCCCC-----------------------------------------------
Q 016368          259 NLKGN---GAKDGAIYNVELDKWKEMPEGMHAG-----------------------------------------------  288 (390)
Q Consensus       259 gg~g~---~~~~~~~yd~~~~~W~~~~~~~~~~-----------------------------------------------  288 (390)
                      ||...   ...+.++||+.+++|+.++.. ...                                               
T Consensus       137 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         137 GGSWSGGVFEKNGEVYSPSSKTWTSLPNA-KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CCCCCSSSCCCCEEEEETTTTEEEEETTS-CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccccccccccceeeeecCCCCceeecCCC-cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            87632   345789999999999987541 100                                               


Q ss_pred             ----------------CCCceEEE-eeCCeEEEEeCCCC--------cEEEE-----ECCCCceEEcccccccccceeEE
Q 016368          289 ----------------WNGPAAST-MNEEELYVVNEGKG--------RLSKY-----DADHDWWDEVIELAELKGAEKIT  338 (390)
Q Consensus       289 ----------------~~~~~~~~-~~~g~lyv~gg~~~--------~v~~y-----d~~~~~W~~i~~~p~~r~~~~~~  338 (390)
                                      ..+.++.. ..++++|++||...        ....+     +..++.|..+..||.+|..++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~  295 (387)
T d1k3ia3         216 KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV  295 (387)
T ss_dssp             EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEE
T ss_pred             eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceee
Confidence                            00011111 13688899988432        22222     34456788899999999888877


Q ss_pred             EE-CCEEEEEeeCC-----------ceEEEEEcCCCCCcceEe
Q 016368          339 AA-RGRVCAVCENG-----------ERIMVVDVLASPARAWLV  369 (390)
Q Consensus       339 ~~-~g~l~i~g~~~-----------~~v~~~d~~~~~~~~W~~  369 (390)
                      ++ +|+|||+|+..           ..+.+||+.+.   +|+.
T Consensus       296 ~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~---~W~~  335 (387)
T d1k3ia3         296 VLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD---TFYK  335 (387)
T ss_dssp             ECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT---EEEE
T ss_pred             eccCCeEEEECCcccCccCCCCcEeceEEEEECCCC---eEEE
Confidence            77 78999998631           15789999888   8984

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.3e-10  Score=67.50  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCC
Q 016368           35 PGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYF   70 (390)
Q Consensus        35 ~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f   70 (390)
                      ..||+|++.+||++||   +.++++|||+|+++++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5799999999999999   89999999999999998753

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.3e-07  Score=64.76  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=36.3

Q ss_pred             cCCCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCC
Q 016368           31 LLLLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYSPYF   70 (390)
Q Consensus        31 ~~~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f   70 (390)
                      -..+..||+||+..||++|+   ++++.+|||+|+.++.++.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~l   58 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL   58 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence            35678899999999999999   99999999999999998764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=3.5e-07  Score=66.58  Aligned_cols=35  Identities=17%  Similarity=0.412  Sum_probs=32.0

Q ss_pred             CCCCCcHHHHHHHHhcCC---chhhHhhhHhHHHhhcC
Q 016368           33 LLPGLPNHLADRCLSSLP---PALLFSVCHSWRRLLYS   67 (390)
Q Consensus        33 ~~~~LP~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s   67 (390)
                      .+..||+||+++||+.|+   ++++++|||+|+.++++
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            456799999999999999   99999999999999865

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.4e-06  Score=61.22  Aligned_cols=39  Identities=28%  Similarity=0.486  Sum_probs=33.7

Q ss_pred             CCCCCc----HHHHHHHHhcCC---chhhHhhhHhHHHhhcCCCCC
Q 016368           33 LLPGLP----NHLADRCLSSLP---PALLFSVCHSWRRLLYSPYFP   71 (390)
Q Consensus        33 ~~~~LP----~dl~~~iL~rLP---l~~~r~Vck~W~~l~~s~~f~   71 (390)
                      .+..||    +||+..||++|+   ++++.+|||+|+.+++++.+-
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lW   55 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLW   55 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            344566    699999999999   999999999999999998753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.52  E-value=0.0045  Score=54.77  Aligned_cols=191  Identities=13%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++.++++++.       -..+.+||..++++..+..+...... .+++.. +++.++.||.+.        .+.+||..+
T Consensus        18 dg~~la~~~~-------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~--------~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECS-------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEET
T ss_pred             CCCEEEEEeC-------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC--------eEEEEeecc
Confidence            4456666543       24688999988888766554322211 223333 566666666543        688999999


Q ss_pred             CccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEE--EeCCCCCeEecCCCCCCCCCCc--eEEEee
Q 016368          224 DREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAI--YNVELDKWKEMPEGMHAGWNGP--AASTMN  298 (390)
Q Consensus       224 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~--yd~~~~~W~~~~~~~~~~~~~~--~~~~~~  298 (390)
                      +.    |+...........  ..++... +++.++.|.   ......+  ++.....+..... . ......  ++....
T Consensus        83 ~~----~~~~~~~~~~~~~--v~~i~~~p~~~~l~~~s---~d~~i~i~~~~~~~~~~~~~~~-~-~~~~~~v~~v~~~p  151 (371)
T d1k8kc_          83 RT----WKPTLVILRINRA--ARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHI-K-KPIRSTVLSLDWHP  151 (371)
T ss_dssp             TE----EEEEEECCCCSSC--EEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEE-C-TTCCSCEEEEEECT
T ss_pred             cc----ccccccccccccc--ccccccccccccceeec---ccCcceeeeeeccccccccccc-c-cccccccccccccc
Confidence            88    8866544322110  1223322 555555531   2233344  4444444443322 1 111111  222223


Q ss_pred             CCeEEEEeCCCCcEEEEECCCCceEEccccc----------------cccc-ceeEEEE-CCEEEEEeeCCceEEEEEcC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDWWDEVIELA----------------ELKG-AEKITAA-RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p----------------~~r~-~~~~~~~-~g~l~i~g~~~~~v~~~d~~  360 (390)
                      ++++++.|+.++.+..||.............                .... .++++.. +|..++.++.+..+.+||+.
T Consensus       152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence            7888888989999999998765432221100                0111 1223322 55666666777789999987


Q ss_pred             CC
Q 016368          361 AS  362 (390)
Q Consensus       361 ~~  362 (390)
                      +.
T Consensus       232 ~~  233 (371)
T d1k8kc_         232 KK  233 (371)
T ss_dssp             GT
T ss_pred             cc
Confidence            65

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.25  E-value=0.043  Score=46.27  Aligned_cols=177  Identities=11%  Similarity=0.017  Sum_probs=96.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+..+++....+........ ......++. ++.+|+.....        ..+.+|++....    -..+........ 
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~~--------~~~~~~~~~g~~----~~~~g~~~~~~~-  158 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGNV----LHKFGCSKHLEF-  158 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETTT--------TEEEEECTTSCE----EEEEECTTTCSS-
T ss_pred             cccccccccccceeecCCCcc-cccceeccccCCcEEEEeecc--------ceeeEeccCCce----eecccccccccc-
Confidence            467778876665554422111 112233333 57888875432        367888886654    333322211111 


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCC-cEEEEECCCC
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKG-RLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~-~v~~yd~~~~  320 (390)
                        ...+++ -++.+|+..   .....+.+||...+...++.. ......-.++++..+|.|||.....+ .+.+|+++. 
T Consensus       159 --~~~i~~d~~g~i~v~d---~~~~~V~~~d~~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-  231 (279)
T d1q7fa_         159 --PNGVVVNDKQEIFISD---NRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-  231 (279)
T ss_dssp             --EEEEEECSSSEEEEEE---GGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-
T ss_pred             --cceeeeccceeEEeee---ccccceeeeecCCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECCCC-
Confidence              133333 367899883   234567889988776555543 11111123444435789999876544 689999764 


Q ss_pred             ceE-EcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          321 WWD-EVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       321 ~W~-~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++. .+..-......+++++. +|.|||. ..++.|.+|.-..-
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            332 22211112234556555 7788876 56778888876544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.062  Score=45.19  Aligned_cols=136  Identities=5%  Similarity=0.001  Sum_probs=79.6

Q ss_pred             CeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc
Q 016368          214 RSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP  292 (390)
Q Consensus       214 ~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~  292 (390)
                      ..+..++.....    +..+.......    ....++ .+|.+|+..   .......+||+..+.-..... ........
T Consensus        93 ~~i~~~~~~g~~----~~~~~~~~~~~----p~~~avd~~G~i~v~~---~~~~~~~~~~~~g~~~~~~g~-~~~~~~~~  160 (279)
T d1q7fa_          93 HQIQIYNQYGQF----VRKFGATILQH----PRGVTVDNKGRIIVVE---CKVMRVIIFDQNGNVLHKFGC-SKHLEFPN  160 (279)
T ss_dssp             CEEEEECTTSCE----EEEECTTTCSC----EEEEEECTTSCEEEEE---TTTTEEEEECTTSCEEEEEEC-TTTCSSEE
T ss_pred             cccccccccccc----eeecCCCcccc----cceeccccCCcEEEEe---eccceeeEeccCCceeecccc-cccccccc
Confidence            367778876665    55553322111    133333 467888883   234557788887654444332 11111222


Q ss_pred             eEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeC-CceEEEEEcCC
Q 016368          293 AASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCEN-GERIMVVDVLA  361 (390)
Q Consensus       293 ~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~-~~~v~~~d~~~  361 (390)
                      .+++..+|.||+.....+.+++||........+..........++++- +|.|||.-.. +..|.++|...
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             eeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            334335789999998888999999987766666543333334556553 7788887433 33577887544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.071  Score=43.69  Aligned_cols=190  Identities=8%  Similarity=0.037  Sum_probs=94.1

Q ss_pred             eEEeecCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          141 QSLGVRNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       141 ~~~~~~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      .++..++.+++.|+..       ..+.+||..+++-...  +......-.+...++++++.|+.+.        .+.+++
T Consensus        19 ~c~~~d~~~l~sgs~D-------g~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D~--------~i~~~~   81 (293)
T d1p22a2          19 YCLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS--------TVRVWD   81 (293)
T ss_dssp             EEEECCSSEEEEEESS-------SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS--------CEEEEE
T ss_pred             EEEEEcCCEEEEEeCC-------CeEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccccc--------cccccc
Confidence            4566667776666542       3578899887754321  1111112223445777777777654        678889


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEE  300 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g  300 (390)
                      ..++.    ...........    ........+.+...+    ......++|..+..-.................. ...
T Consensus        82 ~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  148 (293)
T d1p22a2          82 VNTGE----MLNTLIHHCEA----VLHLRFNNGMMVTCS----KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD-FDD  148 (293)
T ss_dssp             SSSCC----EEEEECCCCSC----EEEEECCTTEEEEEE----TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE-EET
T ss_pred             ccccc----ccccccccccc----cccccccccceeecc----cccceeEeeccccccccccccccccccccccce-ecc
Confidence            88877    44333322211    122222334444332    334455677665431111110111111112222 344


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ...+.++.++.+..||..+.+-..  .+.............+..++.|..++.+.+||+.+.
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             cccccccCCCceeeecCCCCcEEE--EEcccccccccccCCCCeEEEecCCCEEEEEecccc
Confidence            455556667788888887654322  222222222233334445555566667778887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.86  E-value=0.02  Score=47.92  Aligned_cols=214  Identities=12%  Similarity=0.064  Sum_probs=104.6

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ..+.++|+.+++....-+....|+                 ..+.. +++.+++.+..      .+.+.+||..+++-..
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p~-----------------~va~spdG~~l~v~~~~------~~~i~v~d~~t~~~~~   68 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNPM-----------------GAVISPDGTKVYVANAH------SNDVSIIDTATNNVIA   68 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEE-----------------EEEECTTSSEEEEEEGG------GTEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCce-----------------EEEEeCCCCEEEEEECC------CCEEEEEECCCCceee
Confidence            357889999887654222222111                 33333 44544444432      2478999998885432


Q ss_pred             CCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEE
Q 016368          179 GPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNL  255 (390)
Q Consensus       179 ~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~l  255 (390)
                      .  ++....-+.++.. ++ .+++.+..+        ..+.++|..+++    -...-.....     ....+. -++..
T Consensus        69 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~dg~~  129 (301)
T d1l0qa2          69 T--VPAGSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT----VAGTVKTGKS-----PLGLALSPDGKK  129 (301)
T ss_dssp             E--EECSSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE----EEEEEECSSS-----EEEEEECTTSSE
T ss_pred             e--eecccccccccccccccccccccccc--------ceeeecccccce----eeeecccccc-----ceEEEeecCCCe
Confidence            1  1112222333333 33 455544332        367788888776    3332222211     122332 25544


Q ss_pred             EEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCCceEEcccccccccc
Q 016368          256 CMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA  334 (390)
Q Consensus       256 yv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~  334 (390)
                      .++.+  .......+++..+............   ...++... ++.+|+.....+.+..++..............  ..
T Consensus       130 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  202 (301)
T d1l0qa2         130 LYVTN--NGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--AP  202 (301)
T ss_dssp             EEEEE--TTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--EE
T ss_pred             eeeee--ccccceeeeeccccceeeecccCCC---ceEEEeeccccceeeecccccccccccccceeeeecccccC--Cc
Confidence            43321  1234566788777654433221111   11222213 34566665555677777777665554433222  22


Q ss_pred             eeEEEE--CCEEEEEeeC--CceEEEEEcCCC
Q 016368          335 EKITAA--RGRVCAVCEN--GERIMVVDVLAS  362 (390)
Q Consensus       335 ~~~~~~--~g~l~i~g~~--~~~v~~~d~~~~  362 (390)
                      .+++..  +..+|+.+.+  .+.+.++|+.+.
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ceeeccccccccccccccceeeeeeeeecCCC
Confidence            233332  5566666533  347889998764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.78  E-value=0.051  Score=46.46  Aligned_cols=175  Identities=9%  Similarity=0.026  Sum_probs=90.0

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      .+.+||..+.+-..+  +......-.+..+  ++++.+.|+.+.        .+.+||..+..    ......+......
T Consensus        39 ~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~dg--------~i~iwd~~~~~----~~~~~~~~~~~~~  104 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVHG--------NVRIWDTTQTT----HILKTTIPVFSGP  104 (311)
T ss_dssp             EEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEESSSTT----CCEEEEEECSSSC
T ss_pred             EEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccCc--------eEeeeeeeccc----cccccccccccCc
Confidence            577888765532221  1111122223333  677777777764        78899998876    4322222211110


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCC--ceEEEeeCCe-EEEEeCCCCcEEEEECC
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNG--PAASTMNEEE-LYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~--~~~~~~~~g~-lyv~gg~~~~v~~yd~~  318 (390)
                        -.+++. -++++++.++.+ ......++|.++.+-..  . + .....  ..++...++. +++.|+.++.+..||..
T Consensus       105 --v~~v~~s~d~~~l~~~~~~-~~~~~~v~~~~~~~~~~--~-l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1         105 --VKDISWDSESKRIAAVGEG-RERFGHVFLFDTGTSNG--N-L-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             --EEEEEECTTSCEEEEEECC-SSCSEEEEETTTCCBCB--C-C-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             --ccccccccccccccccccc-ccccccccccccccccc--c-c-cccccccccccccccceeeeccccccccccccccc
Confidence              122322 256666554221 12335688887654322  1 1 11111  1222212444 56678888899999988


Q ss_pred             CCceEEcccccccccceeEEEE--CCEEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAA--RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+-..  ...........+..  ++.+++.|+.+..+.+||....
T Consensus       178 ~~~~~~--~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         178 PFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             TBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cccccc--ccccccccccccccCccccccccccccccccccccccc
Confidence            654322  22222222233333  6677777777778999998764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.78  E-value=0.13  Score=43.81  Aligned_cols=180  Identities=13%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+||..+.+......+...... .+++.. +++.++.+|.+.      ...+.+++..+.+    -  +..+.....
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~------~~~~~v~~~~~~~----~--~~~l~~h~~  147 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR------ERFGHVFLFDTGT----S--NGNLTGQAR  147 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS------SCSEEEEETTTCC----B--CBCCCCCSS
T ss_pred             ceEeeeeeeccccccccccccccCccccccccccccccccccccc------ccccccccccccc----c--ccccccccc
Confidence            4688899887754322112111111 122222 566666666442      1246677777665    2  122211111


Q ss_pred             cccceEEEEE-CCE-EEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCC
Q 016368          242 SREAVEAVGF-KGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADH  319 (390)
Q Consensus       242 ~r~~~~~~~~-~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~  319 (390)
                      .  -.+++.. ++. +++.|+   ....+.+||..+.+-..... . ....-.++....++.+++.++.++.+..||..+
T Consensus       148 ~--v~~v~~~~~~~~~l~sgs---~d~~i~i~d~~~~~~~~~~~-~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         148 A--MNSVDFKPSRPFRIISGS---DDNTVAIFEGPPFKFKSTFG-E-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             C--EEEEEECSSSSCEEEEEE---TTSCEEEEETTTBEEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             c--cccccccccceeeecccc---cccccccccccccccccccc-c-ccccccccccCcccccccccccccccccccccc
Confidence            0  1223322 444 444431   12346789988654333221 0 111112233224788888888899999999887


Q ss_pred             CceEEccccccc-----ccce-eEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          320 DWWDEVIELAEL-----KGAE-KITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       320 ~~W~~i~~~p~~-----r~~~-~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..-...-.....     .... +++.. +++.++.|+.++.|.+||+.+.
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            653332211111     1122 23332 5677777777778999998866

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.085  Score=45.24  Aligned_cols=170  Identities=9%  Similarity=0.071  Sum_probs=88.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+|+..+++-.......... -.+++. .++..++.|+.+.        .+.+||..+..    =-..-.....   
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~~~~~~~d~--------~v~i~d~~~~~----~~~~~~~~~~---  226 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWTGGLDN--------TVRSWDLREGR----QLQQHDFTSQ---  226 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECSSC---
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccc--------cccccccccce----eecccccccc---
Confidence            35778888776533221111111 112222 2455666666543        67889988765    1111111111   


Q ss_pred             ccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          243 REAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       243 r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                        -.+++. -+++..+.|+   ......+||..+..-.....   .......+....+|+.++.|+.++.+..||..+.+
T Consensus       227 --i~~l~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         227 --IFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             --EEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             --eEEEEEcccccccceec---cccccccccccccccccccc---cccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence              123332 2555555532   23446788887765433222   11111222223578888888888999999987643


Q ss_pred             eEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          322 WDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       322 W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                        .+..........++... +++.++.|+.++.|.+||+
T Consensus       299 --~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         299 --SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --EEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              33322222222233333 5677777777778999986

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.74  E-value=0.047  Score=46.56  Aligned_cols=165  Identities=8%  Similarity=0.034  Sum_probs=87.2

Q ss_pred             CCcEEEeCCCCceecCCCCCC--CCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEccc-CCC
Q 016368          164 ASPLAFNPQSNTWFFGPQLSI--PRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQ-LKD  238 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~-~~~  238 (390)
                      +.+..||+.+++++.+.....  +.....-..+  +|.||+......    .....-..|....++    -+.+.. +..
T Consensus        78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~----~~~~~g~l~~~~~g~----~~~~~~~~~~  149 (295)
T d2ghsa1          78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK----AETGAGSIYHVAKGK----VTKLFADISI  149 (295)
T ss_dssp             TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT----CCTTCEEEEEEETTE----EEEEEEEESS
T ss_pred             CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc----ccccceeEeeecCCc----EEEEeeccCC
Confidence            468999999999887654432  2222333333  678877543322    122344556555565    444432 221


Q ss_pred             CCccccceEEEEE--CCEEEEEcccCCCCceeEEEeCCCC--CeEe----cCCCCCCCC-CCceEEEeeCCeEEEEeCCC
Q 016368          239 GRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIYNVELD--KWKE----MPEGMHAGW-NGPAASTMNEEELYVVNEGK  309 (390)
Q Consensus       239 ~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~----~~~~~~~~~-~~~~~~~~~~g~lyv~gg~~  309 (390)
                            ..+.+..  +..+|+.   ......+.+|+...+  ....    ... .+... .-.++++..+|.||+..-..
T Consensus       150 ------~Ng~~~s~d~~~l~~~---dt~~~~I~~~~~d~~~~~~~~~~~~~~~-~~~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         150 ------PNSICFSPDGTTGYFV---DTKVNRLMRVPLDARTGLPTGKAEVFID-STGIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             ------EEEEEECTTSCEEEEE---ETTTCEEEEEEBCTTTCCBSSCCEEEEE-CTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             ------cceeeecCCCceEEEe---ecccceeeEeeecccccccccceEEEec-cCcccccccceEEcCCCCEEeeeeCC
Confidence                  1223322  4457777   223455667765432  2111    101 11111 12245544678999876556


Q ss_pred             CcEEEEECCCCceEEcccccccccceeEEEEC----CEEEEEee
Q 016368          310 GRLSKYDADHDWWDEVIELAELKGAEKITAAR----GRVCAVCE  349 (390)
Q Consensus       310 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~----g~l~i~g~  349 (390)
                      +.|.+||++.....++. +|..+  .+.++++    +.|||...
T Consensus       220 g~V~~~dp~G~~~~~i~-lP~~~--~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         220 GAVDRYDTDGNHIARYE-VPGKQ--TTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             TEEEEECTTCCEEEEEE-CSCSB--EEEEEEESTTSCEEEEEEB
T ss_pred             CceEEecCCCcEeeEec-CCCCc--eEEEEEeCCCCCEEEEEEC
Confidence            78999999877666664 55433  2334442    56888753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.73  E-value=0.015  Score=48.74  Aligned_cols=172  Identities=10%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      ..+.+++..+++....-..  .......+.. ++ .+++.+..+        ..+.+++..+..    ........... 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~-  160 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD--------KTVSVINTVTKA----VINTVSVGRSP-  160 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE----EEEEEECCSSE-
T ss_pred             ceeeecccccceeeeeccc--cccceEEEeecCCCeeeeeeccc--------cceeeeeccccc----eeeecccCCCc-
Confidence            4677888887754332111  1111222222 34 455444332        266778888776    33322221111 


Q ss_pred             cccceEEEE-EC-CEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeC--CCCcEEEEE
Q 016368          242 SREAVEAVG-FK-GNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNE--GKGRLSKYD  316 (390)
Q Consensus       242 ~r~~~~~~~-~~-g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg--~~~~v~~yd  316 (390)
                          ...+. .+ ..+|+.+   .+.....+++....+...... ....  ....++.. +..+|+.+.  ..+.+.+||
T Consensus       161 ----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         161 ----KGIAVTPDGTKVYVAN---FDSMSISVIDTVTNSVIDTVK-VEAA--PSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             ----EEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEE-CSSE--EEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             ----eEEEeeccccceeeec---ccccccccccccceeeeeccc-ccCC--cceeeccccccccccccccceeeeeeeee
Confidence                22222 23 3455552   123445566666655444322 1111  11222213 445555443  345799999


Q ss_pred             CCCCceEEcccccccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368          317 ADHDWWDEVIELAELKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       317 ~~~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..+.+-  +..++......+++.. +| +||+.+...+.|.+||+.+.
T Consensus       231 ~~t~~~--~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         231 TGTNKI--TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             TTTTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCeE--EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            887643  3333333333455554 44 57887777789999999876

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.72  E-value=0.082  Score=45.42  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=115.5

Q ss_pred             eEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee--cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          101 EFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV--RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      .++.+|+.++.+........ ....      +     .+ ..++.  +++++++...       .+.+.++++.+.....
T Consensus        47 ~I~r~d~~~~~~~~~~~~~~-~~~~------g-----~P-~Gl~~~~dg~~l~vad~-------~~~i~~~~~~g~~~~~  106 (314)
T d1pjxa_          47 EILRIDLKTGKKTVICKPEV-NGYG------G-----IP-AGCQCDRDANQLFVADM-------RLGLLVVQTDGTFEEI  106 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEE-TTEE------C-----CE-EEEEECSSSSEEEEEET-------TTEEEEEETTSCEEEC
T ss_pred             EEEEEECCCCcEEEEECCcc-ccCC------C-----cc-eeEEEeCCCCEEEEEEC-------CCeEEEEeCCCcEEEE
Confidence            58899999988766543222 1000      0     00 22223  3456666542       2468889998776554


Q ss_pred             CCCCCCCCc--c-eEEEEE-CCEEEEEec--cCCCC-----CCCccCeEEEEECCCCccccccEEccc-CCCCCccccce
Q 016368          179 GPQLSIPRR--W-CAMGSV-GGVVYVASG--VGAHY-----RGDVARSMKKWDLKSDREDWKWEKKAQ-LKDGRFSREAV  246 (390)
Q Consensus       179 ~~~~~~~r~--~-~~~~~~-~~~lyv~GG--~~~~~-----~~~~~~~~~~yd~~t~~~~~~W~~~~~-~~~~~~~r~~~  246 (390)
                      +......+.  . ...++. +|.||+.--  .....     .......++.+++...     ...+.. +..+      .
T Consensus       107 ~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-----~~~~~~~~~~p------N  175 (314)
T d1pjxa_         107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-----MIQVDTAFQFP------N  175 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-----EEEEEEEESSE------E
T ss_pred             EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-----eeEeeCCccee------e
Confidence            433322221  1 122322 688998631  11000     0122335777777543     344332 2211      2


Q ss_pred             EEEE-ECC-----EEEEEcccCCCCceeEEEeCCCC---CeEecCCCCCCCC-CC-ceEEEeeCCeEEEEeCCCCcEEEE
Q 016368          247 EAVG-FKG-----NLCMVNLKGNGAKDGAIYNVELD---KWKEMPEGMHAGW-NG-PAASTMNEEELYVVNEGKGRLSKY  315 (390)
Q Consensus       247 ~~~~-~~g-----~lyv~gg~g~~~~~~~~yd~~~~---~W~~~~~~~~~~~-~~-~~~~~~~~g~lyv~gg~~~~v~~y  315 (390)
                      +.+. .++     .+|+.   ......+..||...+   .+.++-...+... .. -++++..+|.||+.....+.|++|
T Consensus       176 Gi~~~~d~d~~~~~lyv~---d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVA---ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEECTTSCEEEEEEE---ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeEECCCCCcceeEEEEE---eecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            2332 222     57877   223456777876433   1221110011111 11 245544689999987667799999


Q ss_pred             ECCCCceEEcccccccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCCC
Q 016368          316 DADHDWWDEVIELAELKGAEKITAA-RG-RVCAVCENGERIMVVDVLASP  363 (390)
Q Consensus       316 d~~~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~~  363 (390)
                      |+++..-...-.+|..+ ...++.- ++ .|||....++.|+.+|+..+.
T Consensus       253 dp~~g~~~~~i~~p~~~-~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             CTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             eCCCCEEEEEEECCCCC-EEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            99977643322233222 2223332 23 599987677789999987653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.087  Score=45.17  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             CcEEEeCCCCceec-CCCCCC-C-Ccc-eEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          165 SPLAFNPQSNTWFF-GPQLSI-P-RRW-CAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       165 ~~~~~dp~t~~W~~-~~~~~~-~-r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      .+.+||..+..-.. +..+.. . ... .+++.. +++.++.|+.+.        .+.+||.....    .+....+...
T Consensus        73 ~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~~  140 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS--------TLSIWDLAAPT----PRIKAELTSS  140 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS--------EEEEEECCCC------EEEEEEECS
T ss_pred             EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc--------ccccccccccc----cccccccccc
Confidence            47889987653222 111111 1 111 122222 566667776654        78899988776    5544443321


Q ss_pred             CccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          240 RFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       240 ~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      ...  ....+.. ++.+.+.++   ....+.++|..+.+-..... . ......+++...++..++.++.++.+..||..
T Consensus       141 ~~~--v~~~~~~~~~~~l~s~~---~d~~i~~~~~~~~~~~~~~~-~-~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         141 APA--CYALAISPDSKVCFSCC---SDGNIAVWDLHNQTLVRQFQ-G-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SSC--EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccc--ccccccccccccccccc---cccccccccccccccccccc-c-cccccccccccccccccccccccccccccccc
Confidence            110  1222222 455555431   23457788887765332222 1 11111223322577888888889999999988


Q ss_pred             CCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          319 HDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       319 ~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +.+=  +..........++... ++..++.|..+..+.+||+...
T Consensus       214 ~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         214 EGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             TTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ccee--ecccccccceEEEEEcccccccceecccccccccccccc
Confidence            7542  2222112222233333 5667777777788999998765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.58  E-value=0.044  Score=45.92  Aligned_cols=65  Identities=11%  Similarity=0.208  Sum_probs=44.7

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+++++++|+.++.+..||.++.+..++..+.......++... +++.++.|+.+..+.+||+.+.
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5788888999999999999987766655433322222333333 5666666677778999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.17  Score=42.28  Aligned_cols=175  Identities=13%  Similarity=0.221  Sum_probs=90.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      ..+.++|+...+-..  .+............++..++.|+.+.        .+.+||..+..    -.........    
T Consensus       157 ~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg--------~i~~~d~~~~~----~~~~~~~~~~----  218 (342)
T d2ovrb2         157 FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT--------SIRVWDVETGN----CIHTLTGHQS----  218 (342)
T ss_dssp             SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCCS----
T ss_pred             CeEEEeecccceeeE--EEcCcccccccccCCCCEEEEEeCCC--------eEEEeecccce----eeeEeccccc----
Confidence            356677766543221  11111222334445676677776654        67889988766    2222111111    


Q ss_pred             cceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE
Q 016368          244 EAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD  323 (390)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~  323 (390)
                       ...++..++.+++.|+   ....+.+||....+-...-. ..........+...++.+++.|+.++.+..||.++.+-.
T Consensus       219 -~v~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         219 -LTSGMELKDNILVSGN---ADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             -CEEEEEEETTEEEEEE---TTSCEEEEETTTCCEEEEEC-STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             -ceeEEecCCCEEEEEc---CCCEEEEEeccccccccccc-ccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEE
Confidence             1233334455555532   23457789987765433222 112222222222378888999999999999999887643


Q ss_pred             E-cccccc--cccc-eeEEEE-CCEEEEEeeCC----ceEEEEEcCC
Q 016368          324 E-VIELAE--LKGA-EKITAA-RGRVCAVCENG----ERIMVVDVLA  361 (390)
Q Consensus       324 ~-i~~~p~--~r~~-~~~~~~-~g~l~i~g~~~----~~v~~~d~~~  361 (390)
                      . +.....  .... ..+... ++.+++.|+.+    ..++++|...
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            2 221111  1111 223333 44555565432    2588888654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.48  E-value=0.086  Score=44.82  Aligned_cols=180  Identities=13%  Similarity=0.058  Sum_probs=99.5

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc-c
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF-S  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~-~  242 (390)
                      ..++++|+.+++-+... ++. ........-++.+++..          .+.+..||+.+++    .+.+........ .
T Consensus        40 ~~I~r~d~~~g~~~~~~-~~~-~~~~i~~~~dg~l~va~----------~~gl~~~d~~tg~----~~~l~~~~~~~~~~  103 (295)
T d2ghsa1          40 RELHELHLASGRKTVHA-LPF-MGSALAKISDSKQLIAS----------DDGLFLRDTATGV----LTLHAELESDLPGN  103 (295)
T ss_dssp             TEEEEEETTTTEEEEEE-CSS-CEEEEEEEETTEEEEEE----------TTEEEEEETTTCC----EEEEECSSTTCTTE
T ss_pred             CEEEEEECCCCeEEEEE-CCC-CcEEEEEecCCCEEEEE----------eCccEEeecccce----eeEEeeeecCCCcc
Confidence            57999999998654321 121 11122222377887753          1368899999999    887765433221 1


Q ss_pred             ccceEEEEECCEEEEEccc-CCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEee-CCeEEEEeCCCCcEEEEECCCC
Q 016368          243 REAVEAVGFKGNLCMVNLK-GNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMN-EEELYVVNEGKGRLSKYDADHD  320 (390)
Q Consensus       243 r~~~~~~~~~g~lyv~gg~-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~g~lyv~gg~~~~v~~yd~~~~  320 (390)
                      |..-..+--+|.+|+-... .........|....++.+.+...+..+   -..+... +..+|+.....+.+++|+...+
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~---Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIP---NSICFSPDGTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSE---EEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCc---ceeeecCCCceEEEeecccceeeEeeeccc
Confidence            1122233347888775321 112234456666666655544312111   1233213 4468888887889999986432


Q ss_pred             c--e----EEcccccc-cccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          321 W--W----DEVIELAE-LKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       321 ~--W----~~i~~~p~-~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .  .    ......+. .....++++- +|.|++..-.+..|..||+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~  230 (295)
T d2ghsa1         181 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  230 (295)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             ccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc
Confidence            1  1    11111211 1223455553 7889988666778999998766

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.19  Score=41.46  Aligned_cols=184  Identities=13%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec--CCCCCCCCcceEEEE-ECCEEEEEeccCCCCCCCccCeEEEEECC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF--GPQLSIPRRWCAMGS-VGGVVYVASGVGAHYRGDVARSMKKWDLK  222 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~--~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~  222 (390)
                      ++.+|++...      ....+..+++....-..  ......|   +++++ -+++||+.....        ..+.+++..
T Consensus        24 dG~i~v~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p---~gvav~~~g~i~v~d~~~--------~~i~~~~~~   86 (260)
T d1rwia_          24 AGNVYVTSEG------MYGRVVKLATGSTGTTVLPFNGLYQP---QGLAVDGAGTVYVTDFNN--------RVVTLAAGS   86 (260)
T ss_dssp             TCCEEEEECS------SSCEEEEEC----CEEECCCCSCCSC---CCEEECTTCCEEEEETTT--------EEEEECTTC
T ss_pred             CCCEEEEEcC------CCCEEEEEcCCCceEEEeccCCccCc---eEEEEcCCCCEEEeeeee--------ceeeeeeec
Confidence            4567766543      12456677766553222  2222222   22333 267898874332        133444444


Q ss_pred             CCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCC-CCCCCCCCceEEEeeCC
Q 016368          223 SDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPE-GMHAGWNGPAASTMNEE  300 (390)
Q Consensus       223 t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~g  300 (390)
                      +..    +.  ........   ..++++ .+|++|+..   ........++.....-..... ....+   ..+++..+|
T Consensus        87 ~~~----~~--~~~~~~~~---p~~iavd~~g~i~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~~~~g  151 (260)
T d1rwia_          87 NNQ----TV--LPFDGLNY---PEGLAVDTQGAVYVAD---RGNNRVVKLAAGSKTQTVLPFTGLNDP---DGVAVDNSG  151 (260)
T ss_dssp             SCC----EE--CCCCSCCS---EEEEEECTTCCEEEEE---GGGTEEEEECTTCSSCEECCCCSCCSC---CEEEECTTC
T ss_pred             cce----ee--eeeeeeee---cccccccccceeEeec---cccccccccccccceeeeeeecccCCc---ceeeecCCC
Confidence            444    32  22211111   244444 467899872   223446677776654333322 12121   234433578


Q ss_pred             eEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          301 ELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       301 ~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+|+.....+.+.+||.+......+.. .......+++.- +|.||+....++.++.++....
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~-~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             CEeeeccccccccccccccceeeeeec-cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            999988777799999998766554432 222344566664 6789998666778998987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.23  Score=41.66  Aligned_cols=171  Identities=7%  Similarity=0.056  Sum_probs=84.9

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      ..+..||..+.+....................+..++.|+.+.        .+.+||..+..    -...-.....    
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~i~i~d~~~~~----~~~~~~~h~~----  244 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLENGE----LMYTLQGHTA----  244 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS----
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceeeecccccc--------eEEeeeccccc----cccccccccc----
Confidence            3577788877654332221112222222222455566665543        57889988876    3222111111    


Q ss_pred             cceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceE
Q 016368          244 EAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWD  323 (390)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~  323 (390)
                       ...++..+++..+.|+   ....+.+||..+..-..... . .......... .++++++.| .++.+..||.++.+..
T Consensus       245 -~v~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~-~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         245 -LVGLLRLSDKFLVSAA---ADGSIRGWDANDYSRKFSYH-H-TNLSAITTFY-VSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             -CCCEEEECSSEEEEEC---TTSEEEEEETTTCCEEEEEE-C-TTCCCCCEEE-ECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             -cccccccccceeeeee---cccccccccccccceecccc-c-CCceEEEEEc-CCCCEEEEE-eCCEEEEEECCCCCEE
Confidence             1233445666666642   22346788987664222111 1 1112222332 677776655 5789999999887543


Q ss_pred             Ecccccccccc-eeEEEECCEEEEEeeCCc--eEEEEEc
Q 016368          324 EVIELAELKGA-EKITAARGRVCAVCENGE--RIMVVDV  359 (390)
Q Consensus       324 ~i~~~p~~r~~-~~~~~~~g~l~i~g~~~~--~v~~~d~  359 (390)
                      ... +...... .++...++.+++.++.++  .++++|.
T Consensus       317 ~~~-~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         317 HAN-ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             CSC-TTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred             EEE-ecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence            211 1122222 234444666655545444  3667764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.26  E-value=0.088  Score=45.27  Aligned_cols=195  Identities=11%  Similarity=0.087  Sum_probs=106.7

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecC-CCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFG-PQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      .+.||++-       ...+.++++||.+++.... .+..  ..-++++.. +|+|||+...+.    .....+..++..+
T Consensus        50 ~G~Ly~~D-------~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~~----~~~~~i~~~~~~~  116 (319)
T d2dg1a1          50 QGQLFLLD-------VFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENG  116 (319)
T ss_dssp             TSCEEEEE-------TTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTS
T ss_pred             CCCEEEEE-------CCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCCC----ccceeEEEEcCCC
Confidence            45666653       2345799999998765432 1111  112334433 688998753221    1345678888888


Q ss_pred             CccccccEEccc-CCCCCccccceEEEEECCEEEEEcccCC---CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeC
Q 016368          224 DREDWKWEKKAQ-LKDGRFSREAVEAVGFKGNLCMVNLKGN---GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNE  299 (390)
Q Consensus       224 ~~~~~~W~~~~~-~~~~~~~r~~~~~~~~~g~lyv~gg~g~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  299 (390)
                      ..    ...+.. ......  ..-.++.-+|.+|+-...+.   .......+++.....+.+......+   -+++...+
T Consensus       117 ~~----~~~~~~~~~~~~~--~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~d  187 (319)
T d2dg1a1         117 DN----LQDIIEDLSTAYC--IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTD  187 (319)
T ss_dssp             CS----CEEEECSSSSCCC--EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTT
T ss_pred             ce----eeeeccCCCcccC--CcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccc
Confidence            77    544332 221111  01223335788888632111   1123456777777766654322111   13443234


Q ss_pred             C-eEEEEeCCCCcEEEEECCCCc---eEEcccc----cccccceeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          300 E-ELYVVNEGKGRLSKYDADHDW---WDEVIEL----AELKGAEKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       300 g-~lyv~gg~~~~v~~yd~~~~~---W~~i~~~----p~~r~~~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      + .||+.....+.+++||...+.   .......    .......++++- +|.|||....+..|.++|+...
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc
Confidence            4 699998878899999876432   1111111    111223456664 7889998777789999997654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.26  E-value=0.036  Score=46.52  Aligned_cols=148  Identities=6%  Similarity=-0.039  Sum_probs=80.8

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++++++.|+.+.        .+.+||..+..    ...+........   -.+++.. +++.++.|+   ....+.+||.
T Consensus       147 ~~~~l~~g~~dg--------~i~~~d~~~~~----~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~---~d~~i~~~~~  208 (299)
T d1nr0a2         147 DKQFVAVGGQDS--------KVHVYKLSGAS----VSEVKTIVHPAE---ITSVAFSNNGAFLVATD---QSRKVIPYSV  208 (299)
T ss_dssp             TSCEEEEEETTS--------EEEEEEEETTE----EEEEEEEECSSC---EEEEEECTTSSEEEEEE---TTSCEEEEEG
T ss_pred             cccccccccccc--------ccccccccccc----cccccccccccc---ccccccccccccccccc---cccccccccc
Confidence            445555555443        67889988776    544433322111   1233322 455555531   2345778998


Q ss_pred             CCCCeEecCCCCCCCCCC-ceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccc-ccccce-eEEEECCEEEEEeeC
Q 016368          274 ELDKWKEMPEGMHAGWNG-PAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELA-ELKGAE-KITAARGRVCAVCEN  350 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~-~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p-~~r~~~-~~~~~~g~l~i~g~~  350 (390)
                      .++............... .+++...++.+++.|+.++.+..||.++.....+.... ...... .++..++..++.|+.
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             cccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence            877654433312111111 12232358888889999999999999876544332211 122222 233345555666677


Q ss_pred             CceEEEEEcC
Q 016368          351 GERIMVVDVL  360 (390)
Q Consensus       351 ~~~v~~~d~~  360 (390)
                      +..|-+||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            7789899873

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.11  E-value=0.25  Score=42.16  Aligned_cols=198  Identities=10%  Similarity=-0.014  Sum_probs=101.2

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCC
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKS  223 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t  223 (390)
                      ++.+|+...+..   .....+..+++.+.....+...........-..+  +|.||+..-....  ......++.+++..
T Consensus        92 dG~l~va~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~--~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          92 DGRLFVCYLGDF---KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS--TNPLGGVYYVSPDF  166 (319)
T ss_dssp             TSCEEEEECTTS---SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT--TBCCEEEEEECTTS
T ss_pred             CCCEEEEecCCC---ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc--ccCcceeEEEeccc
Confidence            456666542211   2345678888887766543322122222222222  6788875432211  23445688888887


Q ss_pred             CccccccEEccc-CCCCCccccceEEEEE-CC-EEEEEcccCCCCceeEEEeCCCCC---e---EecCCCCCCCCCCceE
Q 016368          224 DREDWKWEKKAQ-LKDGRFSREAVEAVGF-KG-NLCMVNLKGNGAKDGAIYNVELDK---W---KEMPEGMHAGWNGPAA  294 (390)
Q Consensus       224 ~~~~~~W~~~~~-~~~~~~~r~~~~~~~~-~g-~lyv~gg~g~~~~~~~~yd~~~~~---W---~~~~~~~~~~~~~~~~  294 (390)
                      ..    .+.+.. +..+      .+.+.. ++ .||+.-   .....+.+||...+.   .   ............-..+
T Consensus       167 ~~----~~~~~~~~~~p------nGia~s~dg~~lyvad---~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         167 RT----VTPIIQNISVA------NGIALSTDEKVLWVTE---TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             CC----EEEEEEEESSE------EEEEECTTSSEEEEEE---GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             ce----eEEEeecccee------eeeeeccccceEEEec---ccCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence            76    665432 2221      334432 34 588872   234567788765431   1   1111101111111245


Q ss_pred             EEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccc----ccceeEEEE---CCEEEEEeeC-----CceEEEEEcCCC
Q 016368          295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAEL----KGAEKITAA---RGRVCAVCEN-----GERIMVVDVLAS  362 (390)
Q Consensus       295 ~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~----r~~~~~~~~---~g~l~i~g~~-----~~~v~~~d~~~~  362 (390)
                      ++..+|.||+.....+.|.+||++...-.++. +|..    ....+++..   .+.+|+....     +..++..|...+
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~-~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~~  312 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL-IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK  312 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTSCEEEEEE-CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred             eEcCCCCEEEEEcCCCEEEEECCCCcEEEEEe-CCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCCc
Confidence            55457999999877789999999865444443 4422    111223333   2356665422     346777776543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.17  Score=43.82  Aligned_cols=178  Identities=8%  Similarity=0.045  Sum_probs=85.0

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEc-ccCCCC-
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKK-AQLKDG-  239 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~-~~~~~~-  239 (390)
                      ..+.+||..+..-.........  .......  ++.+++.|+.+.        .+.+||..+..    .... ...... 
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~--------~i~i~~~~~~~----~~~~~~~~~~~~  250 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDR--------AVRVWDSETGF----LVERLDSENESG  250 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETTS--------CEEEEETTTCC----EEEEEC------
T ss_pred             eeeeeeeccccccccccccccc--cccccccCCCCCeEEEEcCCC--------eEEEeecccCc----cceeeccccccc
Confidence            4577888876644332221111  1122222  556677776654        57889988776    3322 111100 


Q ss_pred             Cccccc-eEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCC----------CCCCCCceEEEeeCCeEEEEeC
Q 016368          240 RFSREA-VEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGM----------HAGWNGPAASTMNEEELYVVNE  307 (390)
Q Consensus       240 ~~~r~~-~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~----------~~~~~~~~~~~~~~g~lyv~gg  307 (390)
                      ...... .+++.. +++..+.|+   ....+.+||..+..-.......          ........++...+|++++.|+
T Consensus       251 ~~h~~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         251 TGHKDSVYSVVFTRDGQSVVSGS---LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  327 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEE---CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe
Confidence            000001 222222 455555531   2234667887654322211100          0001111222224688888888


Q ss_pred             CCCcEEEEECCCCceEEcccccccccce-eEEEE-------CCEEEEEeeCCceEEEEEcC
Q 016368          308 GKGRLSKYDADHDWWDEVIELAELKGAE-KITAA-------RGRVCAVCENGERIMVVDVL  360 (390)
Q Consensus       308 ~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~-------~g~l~i~g~~~~~v~~~d~~  360 (390)
                      .++.+..||..+.+-  +..+....... .+...       ++.+++.|+.++.|.+||++
T Consensus       328 ~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         328 KDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            899999999886543  33333332222 22221       56777777777889999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.04  E-value=0.082  Score=46.15  Aligned_cols=151  Identities=9%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++++++|+.+.        .+.+||..++.    ++.+..+..-...  -.+++.. ++++.+.|+   ....+.++|+
T Consensus        18 dg~~la~~~~~~--------~i~iw~~~~~~----~~~~~~l~gH~~~--V~~l~fsp~~~~l~s~s---~D~~i~vWd~   80 (371)
T d1k8kc_          18 DRTQIAICPNNH--------EVHIYEKSGNK----WVQVHELKEHNGQ--VTGVDWAPDSNRIVTCG---TDRNAYVWTL   80 (371)
T ss_dssp             TSSEEEEECSSS--------EEEEEEEETTE----EEEEEEEECCSSC--EEEEEEETTTTEEEEEE---TTSCEEEEEE
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCC----EEEEEEecCCCCC--EEEEEECCCCCEEEEEE---CCCeEEEEee
Confidence            566666666543        68899999888    8777655321110  1333333 566555532   2345778999


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEE--ECCCCceEEcccccccccceeEEEE--CCEEEEEee
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKY--DADHDWWDEVIELAELKGAEKITAA--RGRVCAVCE  349 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~y--d~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~  349 (390)
                      .+++|...............+....+++.++.|+.++.+..|  +.....+.........+.....+.+  +++.++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            999888654311111222233323478888888877755554  5444445444333333333333333  667777777


Q ss_pred             CCceEEEEEcCCC
Q 016368          350 NGERIMVVDVLAS  362 (390)
Q Consensus       350 ~~~~v~~~d~~~~  362 (390)
                      .+..+.+||+...
T Consensus       161 ~D~~v~v~~~~~~  173 (371)
T d1k8kc_         161 CDFKCRIFSAYIK  173 (371)
T ss_dssp             TTSCEEEEECCCT
T ss_pred             cCcEEEEEeeccC
Confidence            7778999987653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.2  Score=43.26  Aligned_cols=178  Identities=8%  Similarity=0.055  Sum_probs=86.3

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFS  242 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~  242 (390)
                      ..+.+||..+++......-..... .+.... ++...+.|+.+.        .+.+||..+..    -.........   
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~----~~~~~~~~~~---  206 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDI-YSLDYFPSGDKLVSGSGDR--------TVRIWDLRTGQ----CSLTLSIEDG---  206 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECSSC---
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccce--------eeeeeeccccc----cccccccccc---
Confidence            357888988776543221111111 112222 344455554432        67888888765    3332222211   


Q ss_pred             ccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEec-CCCC--CCCCCCc--eEEEeeCCeEEEEeCCCCcEEEE
Q 016368          243 REAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEM-PEGM--HAGWNGP--AASTMNEEELYVVNEGKGRLSKY  315 (390)
Q Consensus       243 r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~-~~~~--~~~~~~~--~~~~~~~g~lyv~gg~~~~v~~y  315 (390)
                        ...++.  .++.+.+.|+.   ...+.+||..+...... ....  .......  ++....++.+++.|+.++.+..|
T Consensus       207 --~~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw  281 (388)
T d1erja_         207 --VTTVAVSPGDGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  281 (388)
T ss_dssp             --EEEEEECSTTCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             --cccccccCCCCCeEEEEcC---CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence              122222  25566665422   23467888887764432 1101  1111111  22222468888888889999999


Q ss_pred             ECCCCceEEccccc----------ccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          316 DADHDWWDEVIELA----------ELKGA-EKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       316 d~~~~~W~~i~~~p----------~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      |..+..-......+          ..... ..++.. +|+.++.|+.++.|.+||+.+.
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            98764432221111          11111 222222 5677777777789999998865

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=0.18  Score=42.40  Aligned_cols=131  Identities=13%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCce
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPA  293 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~  293 (390)
                      .+.+||..+..    -...-......    -.+++.. ++.+++.|+   ....+.+||.....................
T Consensus       207 ~v~i~d~~~~~----~~~~~~~h~~~----i~~v~~~p~~~~l~s~s---~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         207 SAKLWDVREGM----CRQTFTGHESD----INAICFFPNGNAFATGS---DDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEEEETTTTE----EEEEECCCSSC----EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eEEEEECCCCc----EEEEEeCCCCC----eEEEEECCCCCEEEEEe---CCCeEEEEeecccccccccccccccCceEE
Confidence            67889987765    21111111111    1223322 566666642   223466888876654332221112111122


Q ss_pred             EEEeeCCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCEEEEEeeCCceEEEEE
Q 016368          294 ASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVD  358 (390)
Q Consensus       294 ~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d  358 (390)
                      ++...++.+++.|+.++.+..||..+.  +.+..+........ ++.. ++.+++.|+.++.|.+||
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            332357888888988999999998754  44444443333333 3333 566666667777888876

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.42  E-value=0.65  Score=39.41  Aligned_cols=200  Identities=11%  Similarity=0.060  Sum_probs=100.9

Q ss_pred             cCeEEEEEeecCCCCCCCCCcEEEeCCCCceecCCCCCC-C-Cc-ceEEEEE--CCEEEEEeccCCCCCCCccCeEEEEE
Q 016368          146 RNNLVLIAATTPHFLPALASPLAFNPQSNTWFFGPQLSI-P-RR-WCAMGSV--GGVVYVASGVGAHYRGDVARSMKKWD  220 (390)
Q Consensus       146 ~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~~~~~~~-~-r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~yd  220 (390)
                      ++.+|++...........+.++++|+.++.+........ . -. -.++++.  ++.+|+..+.         +.+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~---------~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------LGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------TEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC---------CeEEEEe
Confidence            456666543211111223569999999998765432211 1 11 1233333  3467776432         3578899


Q ss_pred             CCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCC----------CCc--eeEEEeCCCCCeEecCCCCCC
Q 016368          221 LKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGN----------GAK--DGAIYNVELDKWKEMPEGMHA  287 (390)
Q Consensus       221 ~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~----------~~~--~~~~yd~~~~~W~~~~~~~~~  287 (390)
                      +.+..    ...+........-+.....+ --+|.+|+..-.+.          ...  .+..+++. .+...+...+..
T Consensus        99 ~~g~~----~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~  173 (314)
T d1pjxa_          99 TDGTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             TTSCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             CCCcE----EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcce
Confidence            88775    44333322221100012233 34788998631110          011  23345543 344444321211


Q ss_pred             CCCCceEEEeeCC-----eEEEEeCCCCcEEEEECCCCc---eEE-cccccccc--cceeEEE-ECCEEEEEeeCCceEE
Q 016368          288 GWNGPAASTMNEE-----ELYVVNEGKGRLSKYDADHDW---WDE-VIELAELK--GAEKITA-ARGRVCAVCENGERIM  355 (390)
Q Consensus       288 ~~~~~~~~~~~~g-----~lyv~gg~~~~v~~yd~~~~~---W~~-i~~~p~~r--~~~~~~~-~~g~l~i~g~~~~~v~  355 (390)
                      +   -+++...++     .||+.....+.+++||...+.   +.+ ...++...  ..-++++ .+|.|||....++.|+
T Consensus       174 p---NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 P---NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             E---EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             e---eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            1   122221333     588888878899999865432   222 22222211  2234555 3789999877778999


Q ss_pred             EEEcCCC
Q 016368          356 VVDVLAS  362 (390)
Q Consensus       356 ~~d~~~~  362 (390)
                      +||+.+.
T Consensus       251 ~~dp~~g  257 (314)
T d1pjxa_         251 VFGPDGG  257 (314)
T ss_dssp             EECTTCB
T ss_pred             EEeCCCC
Confidence            9998765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.64  Score=38.72  Aligned_cols=93  Identities=9%  Similarity=-0.030  Sum_probs=50.8

Q ss_pred             ceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEECCEEE
Q 016368          266 KDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAARGRVC  345 (390)
Q Consensus       266 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~  345 (390)
                      ..+..||..+.+........ .. .........++..++.++.++.+..||..+..-..  .+........++...++.+
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~h~~~v~~~~~~~~~l  256 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGH-TD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--TLQGHTALVGLLRLSDKFL  256 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCC-SS-CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE--EECCCSSCCCEEEECSSEE
T ss_pred             ceeeeeecccccceeeeecc-cc-ccccccccccceeeecccccceEEeeecccccccc--cccccccccccccccccee
Confidence            34567887766543322211 11 11222222567777778778888888887654322  2222222333444556666


Q ss_pred             EEeeCCceEEEEEcCCC
Q 016368          346 AVCENGERIMVVDVLAS  362 (390)
Q Consensus       346 i~g~~~~~v~~~d~~~~  362 (390)
                      +.|+.++.|.+||+.+.
T Consensus       257 ~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         257 VSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEECTTSEEEEEETTTC
T ss_pred             eeeeccccccccccccc
Confidence            66666667777777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.26  E-value=0.61  Score=38.18  Aligned_cols=146  Identities=13%  Similarity=0.036  Sum_probs=86.0

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      +++||+.--.        ...+..++..+..    -...........    .+.++ -+|++|+..   .....+..||+
T Consensus       108 ~g~i~v~d~~--------~~~~~~~~~~~~~----~~~~~~~~~~~p----~~i~~~~~g~~~v~~---~~~~~i~~~d~  168 (260)
T d1rwia_         108 QGAVYVADRG--------NNRVVKLAAGSKT----QTVLPFTGLNDP----DGVAVDNSGNVYVTD---TDNNRVVKLEA  168 (260)
T ss_dssp             TCCEEEEEGG--------GTEEEEECTTCSS----CEECCCCSCCSC----CEEEECTTCCEEEEE---GGGTEEEEECT
T ss_pred             cceeEeeccc--------cccccccccccce----eeeeeecccCCc----ceeeecCCCCEeeec---ccccccccccc
Confidence            5688886422        2367777776655    333322211111    23333 477888872   23345778998


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEeeCCc
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCENGE  352 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~~~~  352 (390)
                      +......... . ......++++..+|.||+.....+.+.+|++.......+..-. .....+++.. +|.|||.-..++
T Consensus       169 ~~~~~~~~~~-~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~-~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         169 ESNNQVVLPF-T-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             TTCCEEECCC-S-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS-CCCEEEEEECTTCCEEEEEGGGT
T ss_pred             ccceeeeeec-c-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC-CCCeEEEEEeCCCCEEEEECCCC
Confidence            8776555442 1 1111134443346899999987889999999877666654322 2234566665 678998855566


Q ss_pred             eEEEEEcCCC
Q 016368          353 RIMVVDVLAS  362 (390)
Q Consensus       353 ~v~~~d~~~~  362 (390)
                      .|..++...+
T Consensus       246 rI~~i~~~~~  255 (260)
T d1rwia_         246 RVVKLTSLEH  255 (260)
T ss_dssp             EEEEECCCGG
T ss_pred             EEEEEeCCCC
Confidence            8888876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.14  E-value=0.51  Score=39.65  Aligned_cols=146  Identities=8%  Similarity=0.046  Sum_probs=84.3

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEE-EECCEEEEEcccCCCCceeEE--E
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAV-GFKGNLCMVNLKGNGAKDGAI--Y  271 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~-~~~g~lyv~gg~g~~~~~~~~--y  271 (390)
                      +|+||+.....        ..++.+|+....     +.+...+...     .+.+ .-+|++|+.+-   +......  .
T Consensus        38 dG~l~vt~~~~--------~~I~~i~p~g~~-----~~~~~~~~~~-----~gla~~~dG~l~v~~~---~~~~~~~~~~   96 (302)
T d2p4oa1          38 DGTIFVTNHEV--------GEIVSITPDGNQ-----QIHATVEGKV-----SGLAFTSNGDLVATGW---NADSIPVVSL   96 (302)
T ss_dssp             TSCEEEEETTT--------TEEEEECTTCCE-----EEEEECSSEE-----EEEEECTTSCEEEEEE---CTTSCEEEEE
T ss_pred             CCCEEEEeCCC--------CEEEEEeCCCCE-----EEEEcCCCCc-----ceEEEcCCCCeEEEec---CCceEEEEEe
Confidence            67898875433        378889987654     4444444321     3333 24889999841   2222333  3


Q ss_pred             eCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc---ccc------ccccceeEEEECC
Q 016368          272 NVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI---ELA------ELKGAEKITAARG  342 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~---~~p------~~r~~~~~~~~~g  342 (390)
                      +....+-+.+.. .+.......++..-+|.+|+.....+.++++|+.+..=....   .+.      .....-++...++
T Consensus        97 ~~~~~~~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~  175 (302)
T d2p4oa1          97 VKSDGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN  175 (302)
T ss_dssp             ECTTSCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred             cccccceeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence            333444444433 223323334443368899988877789999999876522221   111      1112334566688


Q ss_pred             EEEEEeeCCceEEEEEcCCC
Q 016368          343 RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       343 ~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+|+.......++.+|+...
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTT
T ss_pred             ceeeecCCCCeEEecccccc
Confidence            89988777778888887653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.66  Score=37.80  Aligned_cols=145  Identities=14%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE-CCEEEEEcccCCCCceeEEEeC
Q 016368          195 GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF-KGNLCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       195 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~-~g~lyv~gg~g~~~~~~~~yd~  273 (390)
                      ++.+++.|+.+.        .+.+||..++.    ....-......    -.+++.. ++.+.+.+.   .......++.
T Consensus        28 ~~~~l~s~s~Dg--------~i~iWd~~~~~----~~~~~~~h~~~----V~~~~~~~~~~~~~~~~---~~~~~~~~~~   88 (317)
T d1vyhc1          28 VFSVMVSASEDA--------TIKVWDYETGD----FERTLKGHTDS----VQDISFDHSGKLLASCS---ADMTIKLWDF   88 (317)
T ss_dssp             SSSEEEEEESSS--------CEEEEETTTCC----CCEEECCCSSC----EEEEEECTTSSEEEEEE---TTSCCCEEET
T ss_pred             CCCEEEEEeCCC--------eEEEEECCCCC----EEEEEeCCCCc----EEEEeeecccccccccc---cccccccccc
Confidence            566777776654        68899998876    33221111111    1223322 444444421   2233445666


Q ss_pred             CCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE--CCEEEEEeeCC
Q 016368          274 ELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA--RGRVCAVCENG  351 (390)
Q Consensus       274 ~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~--~g~l~i~g~~~  351 (390)
                      .......... .... .........++..++.++.++.+..||..+......-  .........+..  ++.+++.++.+
T Consensus        89 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMH-GHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCC-CCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccc-cccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEE--ccCCCcceeeecccCCCEEEEEeCC
Confidence            5555444332 1111 1122222256777778888889999999877654332  222222223332  56777777777


Q ss_pred             ceEEEEEcCCC
Q 016368          352 ERIMVVDVLAS  362 (390)
Q Consensus       352 ~~v~~~d~~~~  362 (390)
                      ..+.++|+.+.
T Consensus       165 ~~v~~~~~~~~  175 (317)
T d1vyhc1         165 QTVRVWVVATK  175 (317)
T ss_dssp             SCEEEEETTTC
T ss_pred             CeEEEEeeccc
Confidence            78999998775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.95  E-value=0.42  Score=42.63  Aligned_cols=179  Identities=11%  Similarity=-0.025  Sum_probs=97.2

Q ss_pred             CCCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC
Q 016368          162 ALASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GG-VVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG  239 (390)
Q Consensus       162 ~~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~  239 (390)
                      ..+.+.++|..|++-...-+  ....-+..+.- +| ++|+. +.+        ..+.+||..+..    -+.+..++..
T Consensus        40 d~g~v~v~D~~t~~v~~~~~--~g~~~~~v~fSpDG~~l~~~-s~d--------g~v~~~d~~t~~----~~~~~~i~~~  104 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVI-GRD--------GKVNMIDLWMKE----PTTVAEIKIG  104 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEE-ETT--------SEEEEEETTSSS----CCEEEEEECC
T ss_pred             CCCEEEEEECCCCcEEEEEe--CCCCeeEEEECCCCCEEEEE-cCC--------CCEEEEEeeCCC----ceEEEEEecC
Confidence            44678999999987644322  22223444333 45 46554 333        278899998877    5544444432


Q ss_pred             CccccceEEEE-----ECCE-EEEEcccCCCCceeEEEeCCCCCeEecCCC----------CCCCCCCceEEEeeCCe-E
Q 016368          240 RFSREAVEAVG-----FKGN-LCMVNLKGNGAKDGAIYNVELDKWKEMPEG----------MHAGWNGPAASTMNEEE-L  302 (390)
Q Consensus       240 ~~~r~~~~~~~-----~~g~-lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~----------~~~~~~~~~~~~~~~g~-l  302 (390)
                      ..   ....+.     -+|+ +|+.+   .....+.++|.++.+-......          .+.++. ..++...+|. +
T Consensus       105 ~~---~~~~~~s~~~SpDG~~l~vs~---~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~s~dg~~~  177 (432)
T d1qksa2         105 SE---ARSIETSKMEGWEDKYAIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV-AAILASHYRPEF  177 (432)
T ss_dssp             SE---EEEEEECCSTTCTTTEEEEEE---EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE-EEEEECSSSSEE
T ss_pred             CC---CCCeEEecccCCCCCEEEEEc---CCCCeEEEEeCccccceeeeccCCccccceeccCCCce-eEEEECCCCCEE
Confidence            22   122222     1565 56652   2345677899988765432110          011111 1222224454 4


Q ss_pred             EEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE-EEEEeeCCceEEEEEcCCC
Q 016368          303 YVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR-VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       303 yv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~-l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++-...++.++.+|..+..-.++..++.....+.+... +|+ +++.+..++.+.++|..+.
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            45555667899999887665555555554444555554 455 5555455667888887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.64  E-value=0.39  Score=40.58  Aligned_cols=140  Identities=9%  Similarity=-0.014  Sum_probs=77.1

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSR  243 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r  243 (390)
                      .++++||..+++..+++.  ..+.....-.-+++..+++|...      ...+.+||.+++.    -+.+..-....   
T Consensus        24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~------g~~v~v~d~~~~~----~~~~~~~~~~v---   88 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTRE------GDFLGIYDYRTGK----AEKFEENLGNV---   88 (360)
T ss_dssp             TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETT------EEEEEEEETTTCC----EEECCCCCCSE---
T ss_pred             CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCC------CCEEEEEECCCCc----EEEeeCCCceE---
Confidence            478999999988887642  22332222222777666655442      1358899999988    66654432221   


Q ss_pred             cceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCC----------CCcE
Q 016368          244 EAVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEG----------KGRL  312 (390)
Q Consensus       244 ~~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~----------~~~v  312 (390)
                        ...+. -+|+..+.++   .......++..+.+-..+.. ....... .++...+|+.+++...          .+.+
T Consensus        89 --~~~~~spdg~~l~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          89 --FAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIER-SREAMIT-DFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             --EEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEE-CSSSCCC-CEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             --Eeeeecccccccceec---cccccccccccccceeeeee-ccccccc-chhhccceeeeeeeccccccceeeccccce
Confidence              22322 3666555531   34456788888776554433 2122222 2222267777665431          1267


Q ss_pred             EEEECCCCceEEc
Q 016368          313 SKYDADHDWWDEV  325 (390)
Q Consensus       313 ~~yd~~~~~W~~i  325 (390)
                      ..||..+..=..+
T Consensus       162 ~v~d~~~~~~~~~  174 (360)
T d1k32a3         162 HVYDMEGRKIFAA  174 (360)
T ss_dssp             EEEETTTTEEEEC
T ss_pred             eeeccccCceeee
Confidence            8899887643333

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.19  E-value=0.97  Score=37.89  Aligned_cols=134  Identities=15%  Similarity=-0.005  Sum_probs=76.7

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA  294 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  294 (390)
                      .+++||.+++.    ..++..  ..+.   ......-+|+..++++.. .+..+.++|.++++-..+..   .......+
T Consensus        25 ~v~v~d~~~~~----~~~~~~--~~~v---~~~~~spDg~~l~~~~~~-~g~~v~v~d~~~~~~~~~~~---~~~~v~~~   91 (360)
T d1k32a3          25 QAFIQDVSGTY----VLKVPE--PLRI---RYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAEKFEE---NLGNVFAM   91 (360)
T ss_dssp             EEEEECTTSSB----EEECSC--CSCE---EEEEECSSSEEEEEEEET-TEEEEEEEETTTCCEEECCC---CCCSEEEE
T ss_pred             eEEEEECCCCc----EEEccC--CCCE---EEEEECCCCCEEEEEEcC-CCCEEEEEECCCCcEEEeeC---CCceEEee
Confidence            67788888877    666642  1111   121222377766553221 23456799999988776654   11112233


Q ss_pred             EEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCEEEEEee----------CCceEEEEEcCCC
Q 016368          295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGRVCAVCE----------NGERIMVVDVLAS  362 (390)
Q Consensus       295 ~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~l~i~g~----------~~~~v~~~d~~~~  362 (390)
                      +...+|+.++.++.++.++.++..+.....+........ ..++.. +|+.++++.          ....+.++|+.+.
T Consensus        92 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          92 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eecccccccceeccccccccccccccceeeeeecccccc-cchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            333688888888888899999999877655543222111 123222 555554431          1236788888764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.95  E-value=1.2  Score=36.90  Aligned_cols=51  Identities=8%  Similarity=-0.192  Sum_probs=30.9

Q ss_pred             cEEEEECCCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+..+|..+.........+.......+....+..++++. .+.+.+||+.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~  270 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN  270 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT
T ss_pred             cEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC
Confidence            678888888877766544444444444444433334423 357888888765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=1.4  Score=36.24  Aligned_cols=110  Identities=8%  Similarity=0.048  Sum_probs=65.8

Q ss_pred             eEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEc
Q 016368          246 VEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEV  325 (390)
Q Consensus       246 ~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i  325 (390)
                      ......++...+.|+   ....+.+||..+.+-.....   ........+. .++.+++.|+.++.+..||....+-...
T Consensus       180 ~~~~~~~~~~l~s~~---~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~  252 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGS---LDTSIRVWDVETGNCIHTLT---GHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQT  252 (342)
T ss_dssp             EEEEEECSSEEEEEE---TTSCEEEEETTTCCEEEEEC---CCCSCEEEEE-EETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccCCCCEEEEEe---CCCeEEEeecccceeeeEec---ccccceeEEe-cCCCEEEEEcCCCEEEEEeccccccccc
Confidence            334446676666642   22346788987765332211   1111122222 6777888888899999999887654332


Q ss_pred             -ccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          326 -IELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       326 -~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                       ...............++.+++.|+.+..|.+||+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             ccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC
Confidence             2222223333445557777777777889999999875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=93.80  E-value=0.64  Score=38.80  Aligned_cols=149  Identities=13%  Similarity=0.047  Sum_probs=69.6

Q ss_pred             eeEEEEeCCCCCceeCCCCCCCCCcccccccccccccCCCceEEee-cCeEEEEEeecCCCCCCCCCcEEEeCCCCceec
Q 016368          100 MEFFCFDPISSTWNPLPAPPQNPPLRLLYRHPSFLSRKLPVQSLGV-RNNLVLIAATTPHFLPALASPLAFNPQSNTWFF  178 (390)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~~~~dp~t~~W~~  178 (390)
                      ..++++|+.+++-...-.++......               ..+.. +++.+++.+.      .-+.+.+||..+++-..
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~p~---------------~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFGPG---------------TAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSC---------------EEEECTTSSEEEEEET------TTTEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCCcc---------------eEEECCCCCEEEEEEC------CCCcEEEEeCccCeeee
Confidence            46899999998654422232201100               33333 4455555543      23578999998875432


Q ss_pred             CCCCCCC-----CcceEEEEE--CCEEEEEeccCCC---CCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEE
Q 016368          179 GPQLSIP-----RRWCAMGSV--GGVVYVASGVGAH---YRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEA  248 (390)
Q Consensus       179 ~~~~~~~-----r~~~~~~~~--~~~lyv~GG~~~~---~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~  248 (390)
                      .......     ..-...+..  +..+|+.+.....   ........+.+||..++..   ...+.....+...  ....
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~--~~~~  151 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFPMPRQV--YLMR  151 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEECCSSC--CCEE
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee---eeEEEeeeccCce--EEEE
Confidence            1111111     111222222  3467776543211   0012334677888887661   1112111111110  1223


Q ss_pred             EEECCEEEEEcccCCCCceeEEEeCCCCCeEe
Q 016368          249 VGFKGNLCMVNLKGNGAKDGAIYNVELDKWKE  280 (390)
Q Consensus       249 ~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~  280 (390)
                      ...++++|+.+      ....++|..+.+...
T Consensus       152 ~~~~~~~~~~~------~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         152 AADDGSLYVAG------PDIYKMDVKTGKYTV  177 (346)
T ss_dssp             ECTTSCEEEES------SSEEEECTTTCCEEE
T ss_pred             ecCCCEEEEeC------CcceEEEccCCCEEE
Confidence            33466777763      335567776665543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=1.7  Score=35.71  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=91.6

Q ss_pred             ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEEE--CCEEEEEcccCCCCceeEEE
Q 016368          194 VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGF--KGNLCMVNLKGNGAKDGAIY  271 (390)
Q Consensus       194 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~--~g~lyv~gg~g~~~~~~~~y  271 (390)
                      ++++||+.-.        ....++++++....    -+.+-.-....    ..+.++.  +|.+|+....  ....++..
T Consensus        87 ~~~~lY~~d~--------~~~~I~v~~~~g~~----~~~~~~~~~~~----P~~l~vd~~~g~ly~~~~~--~~~~I~r~  148 (266)
T d1ijqa1          87 IHSNIYWTDS--------VLGTVSVADTKGVK----RKTLFRENGSK----PRAIVVDPVHGFMYWTDWG--TPAKIKKG  148 (266)
T ss_dssp             TTTEEEEEET--------TTTEEEEEETTSSS----EEEEEECTTCC----EEEEEEETTTTEEEEEECS--SSCEEEEE
T ss_pred             ccceEEEEec--------CCCEEEeEecCCce----EEEEEcCCCCC----cceEEEEcccCeEEEeccC--CCcceeEe
Confidence            4899999732        33478999987765    33322211111    1344443  7899998311  12356777


Q ss_pred             eCCCCCeEecCCCCCCCCCC-ceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccccc-cccceeEEEECCEEEEEe
Q 016368          272 NVELDKWKEMPEGMHAGWNG-PAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAE-LKGAEKITAARGRVCAVC  348 (390)
Q Consensus       272 d~~~~~W~~~~~~~~~~~~~-~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~~g~l~i~g  348 (390)
                      ++....-+.+..   ..... .++++ ..+++||+.....+.|+++|.....=..+..... ....+++++.++.||+.-
T Consensus       149 ~~dGs~~~~l~~---~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td  225 (266)
T d1ijqa1         149 GLNGVDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD  225 (266)
T ss_dssp             ETTSCCEEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             ccCCCceecccc---cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence            776554444322   11111 23443 1368899999888899999998654344432221 234568899999999985


Q ss_pred             eCCceEEEEEcCCCCC
Q 016368          349 ENGERIMVVDVLASPA  364 (390)
Q Consensus       349 ~~~~~v~~~d~~~~~~  364 (390)
                      ...+.|+.+|..+...
T Consensus       226 ~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         226 IINEAIFSANRLTGSD  241 (266)
T ss_dssp             TTTTEEEEEETTTCCC
T ss_pred             CCCCeEEEEECCCCcc
Confidence            5667999999776543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.25  E-value=1.9  Score=35.84  Aligned_cols=163  Identities=13%  Similarity=-0.046  Sum_probs=78.7

Q ss_pred             CCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCC----CCCccccce
Q 016368          172 QSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLK----DGRFSREAV  246 (390)
Q Consensus       172 ~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~----~~~~~r~~~  246 (390)
                      ...+-..+...+........+.. ++.+|+.-.        ....++.+|+.+.... .|..-+.+.    .... ....
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~--------~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~n  168 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADS--------YRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVF-PAAN  168 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEET--------TTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCS-CSEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeecc--------ccccceeeeccCCcce-eEecCCccceeeccCcc-cccc
Confidence            33444444333333333334333 678877532        2346777887766410 011111110    0000 0023


Q ss_pred             EEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcc
Q 016368          247 EAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVI  326 (390)
Q Consensus       247 ~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~  326 (390)
                      ..+..++.+|+..   .....+..|+.....-............-.++++..+|.||+.....+.|++|++....-....
T Consensus       169 gi~~~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~  245 (302)
T d2p4oa1         169 GLKRFGNFLYVSN---TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ  245 (302)
T ss_dssp             EEEEETTEEEEEE---TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred             cccccCCceeeec---CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEe
Confidence            4455678888872   2345566777665431111110001111224554468999999877889999999865433332


Q ss_pred             cccccccceeEEEEC------CEEEEEe
Q 016368          327 ELAELKGAEKITAAR------GRVCAVC  348 (390)
Q Consensus       327 ~~p~~r~~~~~~~~~------g~l~i~g  348 (390)
                       ..........++++      ..|||..
T Consensus       246 -~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         246 -AEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             -GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             -cCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence             22222223444442      3488864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.74  E-value=2.3  Score=35.47  Aligned_cols=103  Identities=5%  Similarity=0.034  Sum_probs=57.0

Q ss_pred             CEEEEEcccCCCCceeEEEeCCCCCeE-ecCCCCCCCCCCceEEE-eeCCeEEEEeCCCCcEEEEECCCCceEEcccccc
Q 016368          253 GNLCMVNLKGNGAKDGAIYNVELDKWK-EMPEGMHAGWNGPAAST-MNEEELYVVNEGKGRLSKYDADHDWWDEVIELAE  330 (390)
Q Consensus       253 g~lyv~gg~g~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~-~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~  330 (390)
                      +.+++.|+   ....+.+||..+++-. .+.. ...+........ ..+|+.++.++.++.+.+||.++.+-.+.-.+..
T Consensus       218 ~~~l~s~~---~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         218 GEFVITVG---SDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             CCEEEEEE---TTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             ceeccccc---cccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            56666542   2344778998877643 3332 112222222221 1578888899899999999999876433221111


Q ss_pred             c---ccceeEEEECCEEEEEeeCCceEEEEEc
Q 016368          331 L---KGAEKITAARGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       331 ~---r~~~~~~~~~g~l~i~g~~~~~v~~~d~  359 (390)
                      .   ....++...++..++-|+.++.|.+||+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            1   1112333334444455566778999985

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.18  E-value=2  Score=33.40  Aligned_cols=55  Identities=5%  Similarity=0.159  Sum_probs=38.1

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCC-----eEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDK-----WKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~-----W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      ++++|++     -+...+.||..+.+     |..++.       ..+++. .+|++|++-|  ...++||..+.+
T Consensus       110 ~~~~yfF-----kg~~yw~yd~~~~~~~~~~w~gip~-------~daA~~-~~g~~YfFkg--~~y~r~~~~~~~  169 (192)
T d1qhua1         110 DEGILFF-----QGNRKWFWDLTTGTKKERSWPAVGN-------CTSALR-WLGRYYCFQG--NQFLRFNPVSGE  169 (192)
T ss_dssp             SSEEEEE-----ETTEEEEEETTTTEEEEECCTTSCC-------CSEEEE-ETTEEEEEET--TEEEEECTTTCC
T ss_pred             CCeEEEE-----eCCeEEEEeCCCCCcccccccCcCC-------cceeEE-eCCcEEEEEC--CEEEEEcCCcce
Confidence            7899999     45567789987762     433322       224444 7999999965  578999987753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=2.2  Score=33.85  Aligned_cols=128  Identities=11%  Similarity=0.113  Sum_probs=66.9

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA  294 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  294 (390)
                      .+.+||..+..    -.  ..+.....   ....+..++...+.|+   ....+.+||+.+.+-.....   ........
T Consensus       159 ~i~~~d~~~~~----~~--~~~~~~~~---~v~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~---~~~~~v~~  223 (293)
T d1p22a2         159 TIKVWNTSTCE----FV--RTLNGHKR---GIACLQYRDRLVVSGS---SDNTIRLWDIECGACLRVLE---GHEELVRC  223 (293)
T ss_dssp             EEEEEETTTCC----EE--EEEECCSS---CEEEEEEETTEEEEEE---TTSCEEEEETTTCCEEEEEC---CCSSCEEE
T ss_pred             ceeeecCCCCc----EE--EEEccccc---ccccccCCCCeEEEec---CCCEEEEEecccceeeeeec---ccceeeee
Confidence            67888888766    22  11111111   1223334444444431   23346789988765543322   11111223


Q ss_pred             EEeeCCeEEEEeCCCCcEEEEECCCC-------ceEEcccccccccceeEEEECCEEEEEeeCCceEEEEE
Q 016368          295 STMNEEELYVVNEGKGRLSKYDADHD-------WWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVD  358 (390)
Q Consensus       295 ~~~~~g~lyv~gg~~~~v~~yd~~~~-------~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d  358 (390)
                      .. .++..++.|+.++.+..||..+.       .+..+..+.........+..++..++.|+.++.|.+||
T Consensus       224 ~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 IR-FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EE-CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             cc-ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            33 77888888888999999986431       12222222222222223344666666666677888886

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.91  E-value=3.2  Score=35.19  Aligned_cols=50  Identities=18%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             cEEEEECCCCceEEcccccccccceeEEEE-CCE--EEEEeeCCceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIELAELKGAEKITAA-RGR--VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~--l~i~g~~~~~v~~~d~~~~  362 (390)
                      .++++|..+.+  .+..++......++... +|+  +|+.+..++.+.+||..+.
T Consensus       295 ~v~v~D~~t~~--~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         295 NTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEEEECCCCc--EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            68999988764  55555544444445554 554  6777666789999999887

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.60  E-value=3  Score=34.16  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEccccccccccee-EEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEK-ITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..+.+++.|..++.+..||..+..-  +..+........ ++.. ++.+++.|+.+..+.++|+...
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~--~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cccceeEEeecCceEEEEECCCCcE--EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            5677888888888999999876542  222222222222 3332 6677777777778999998765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=91.57  E-value=3.4  Score=34.76  Aligned_cols=58  Identities=12%  Similarity=0.121  Sum_probs=35.6

Q ss_pred             EEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CCE--EEEEeeCCceEEEEEcCCC
Q 016368          303 YVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RGR--VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       303 yv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~--l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++.....+.+..+|..+.+=  +..++.......++.. +|+  +|+.++.++.|.+||+.+.
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~--~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EEeecCCCeEEEEECCCCcE--EEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            33344445788899887642  2233333344445444 554  5666666779999999886

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.37  E-value=3.8  Score=33.32  Aligned_cols=176  Identities=9%  Similarity=0.011  Sum_probs=100.7

Q ss_pred             CCcEEEeCCCCceecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          164 ASPLAFNPQSNTWFFGPQLSIPRRWCAMGS--VGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       164 ~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      +.+.+.+.....-+.+-..... .-.++++  ++++||+.-..        ...+.+.++....    =+.+...... .
T Consensus        58 ~~I~~~~l~g~~~~~v~~~~~~-~p~~iAvD~~~~~lY~~d~~--------~~~I~~~~~dg~~----~~~l~~~~l~-~  123 (263)
T d1npea_          58 PSIGRASLHGGEPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMDGTQ----RRVLFDTGLV-N  123 (263)
T ss_dssp             TEEEEEESSSCCCEEEECTTCC-CEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECSSCS-S
T ss_pred             CeEEEEEcccCCcEEEEEeccc-cccEEEEeccCCeEEEeccC--------CCEEEEEecCCce----EEEEeccccc-C
Confidence            4577777654433332111111 1133444  38899987533        3478888887654    2333221111 1


Q ss_pred             cccceEEEE--ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCc-eEEE-eeCCeEEEEeCCCCcEEEEEC
Q 016368          242 SREAVEAVG--FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGP-AAST-MNEEELYVVNEGKGRLSKYDA  317 (390)
Q Consensus       242 ~r~~~~~~~--~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~g~lyv~gg~~~~v~~yd~  317 (390)
                         ..+.++  .+|.+|+.-. +.....++..++....-+.+..   .....+ ++++ ..+++||+.....+.++++|.
T Consensus       124 ---p~~l~vdp~~g~ly~t~~-~~~~~~I~r~~~dG~~~~~i~~---~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         124 ---PRGIVTDPVRGNLYWTDW-NRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             ---EEEEEEETTTTEEEEEEC-CSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ---CcEEEEecccCcEEEeec-CCCCcEEEEecCCCCCceeeee---ecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence               134444  4889998731 1122346667776554344322   112222 3443 246899999887889999999


Q ss_pred             CCCceEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          318 DHDWWDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       318 ~~~~W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ....=+.+.  ......+++++.++.||+.-...+.|+.+|..+.
T Consensus       197 ~g~~~~~v~--~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         197 AQPGRRKVL--EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TEEEEEEEE--ECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCeEEEE--CCCCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            865433332  1223346888899999998656779999998765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.81  E-value=4  Score=32.65  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=40.3

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccc-eeEEEE-CCEEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA-EKITAA-RGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ..+.+++.|+.++.+..||..+.+...  .+...... ..++.. ++++++.|+.++.|.+||+.+.
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVSTGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             cCCceeEeccCCCEEEEEECCCCcEEE--EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            567777788888899999998765322  22222222 223333 6677777777789999998765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=89.67  E-value=0.5  Score=39.52  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=46.4

Q ss_pred             eCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE-CC-EEEEEeeCCceEEEEEcCCC
Q 016368          298 NEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA-RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       298 ~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+++.+++++.++.+.+||.++++=...-.++......+++.. +| .+|+.+..++.|.+||+.+.
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            5788888898899999999999854433334444444455554 44 46777666788999998774

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.64  E-value=2  Score=39.57  Aligned_cols=119  Identities=14%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             EEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCC-----CccccceEEEEECCEEEEEcccCCC
Q 016368          190 AMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDG-----RFSREAVEAVGFKGNLCMVNLKGNG  264 (390)
Q Consensus       190 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~-----~~~r~~~~~~~~~g~lyv~gg~g~~  264 (390)
                      .-++.+++||+....         ..+.++|.+|++.  .|+.-+..+..     .........+..++++|+..    .
T Consensus        61 tPiv~~g~vyv~t~~---------~~v~AlDa~tG~~--lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~  125 (560)
T d1kv9a2          61 TPLFHDGVIYTSMSW---------SRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT----L  125 (560)
T ss_dssp             CCEEETTEEEEEEGG---------GEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC----T
T ss_pred             CCEEECCEEEEECCC---------CeEEEEeCCCCCE--EEEECCCCCccccccccccccccCcceeCCeEEEEe----C
Confidence            346889999987543         3688899998873  48753322211     00001234666789998874    3


Q ss_pred             CceeEEEeCCCC--CeEecCCCCCCCC-CCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368          265 AKDGAIYNVELD--KWKEMPEGMHAGW-NGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       265 ~~~~~~yd~~~~--~W~~~~~~~~~~~-~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~  324 (390)
                      ...+..+|..+.  .|+.......... ......+ .++.+++-..     ..+.+..||.+|.+  |+.
T Consensus       126 ~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         126 DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCcEEeccCccCcccceeeeeeeee-ecCcccccccceeccccceEEEEECCCceEEeee
Confidence            445778888776  5776443222222 2223333 6787776433     12478899998865  654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.37  E-value=4.4  Score=32.50  Aligned_cols=134  Identities=12%  Similarity=0.028  Sum_probs=70.4

Q ss_pred             eEEEEECCCCccccccEEcccCCCCCccccceEEEEECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCCCCceE
Q 016368          215 SMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVGFKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGWNGPAA  294 (390)
Q Consensus       215 ~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  294 (390)
                      .+.+++..+..    +........      ...+...++..+++|+.  .+..+.+|+.....-..... .+.......+
T Consensus       102 ~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~v~~~--~~~~v~~~~~~~~~~~~~~~-~~~~~~v~~~  168 (287)
T d1pgua2         102 DLLILQSFTGD----IIKSVRLNS------PGSAVSLSQNYVAVGLE--EGNTIQVFKLSDLEVSFDLK-TPLRAKPSYI  168 (287)
T ss_dssp             EEEEEETTTCC----EEEEEECSS------CEEEEEECSSEEEEEET--TTSCEEEEETTEEEEEEECS-SCCSSCEEEE
T ss_pred             cceeeecccee----eeeeccccc------eeeeeeccCcceeeecc--ccceeeeeeccccceeeeee-eccCCceeEE
Confidence            46677777776    543332221      13344456666666522  33456788865332211111 1111111223


Q ss_pred             EEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccc-ee-----------EEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          295 STMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGA-EK-----------ITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       295 ~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~-----------~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      +...++..++.|..++.+..||..+..-... .+...... ..           ....++.+++.|+.+..+.+||+.+.
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             EeccCccccccccccccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            3235788888888899999999876542211 11111111 11           11234566666677789999998764

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.33  E-value=4.4  Score=31.24  Aligned_cols=100  Identities=10%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCe---EecCC-CCCCCCCCceEEE--eeCCeEEEEeCCCCcEEEEECCCCce---
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKW---KEMPE-GMHAGWNGPAAST--MNEEELYVVNEGKGRLSKYDADHDWW---  322 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W---~~~~~-~~~~~~~~~~~~~--~~~g~lyv~gg~~~~v~~yd~~~~~W---  322 (390)
                      ++++|++     -+...++|+..+...   +.+.. .++.......++.  ..++++|++-|  +..|+||..++.=   
T Consensus        64 ~~~~yff-----kg~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg--~~y~~y~~~~~~~~~~  136 (192)
T d1pexa_          64 HDLIFIF-----RGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKD  136 (192)
T ss_dssp             TTEEEEE-----ETTEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSS
T ss_pred             CCEEEEE-----cCCEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC--CEEEEEcCccccccCC
Confidence            6889988     455677887554332   12222 1112212222332  23689999975  5789999876531   


Q ss_pred             --EEcc----cccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          323 --DEVI----ELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       323 --~~i~----~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                        +.|.    .+|. . ..++...+|++|++ . +...+.+|..+.
T Consensus       137 ~pk~I~~~w~gvp~-~-vdAa~~~~g~~YfF-~-g~~y~r~~~~~~  178 (192)
T d1pexa_         137 YPRLIEEDFPGIGD-K-VDAVYEKNGYIYFF-N-GPIQFEYSIWSN  178 (192)
T ss_dssp             CCCBHHHHSTTSCS-C-CSEEEEETTEEEEE-E-TTEEEEEETTTT
T ss_pred             CcEEHhhcCCCCCC-C-ceEEEEeCCEEEEE-E-CCEEEEEeCCcC
Confidence              1121    1221 1 22333569999999 4 347888887664

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=4.8  Score=31.15  Aligned_cols=62  Identities=15%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEe-----cCCCC-CCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKE-----MPEGM-HAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-----~~~~~-~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      ++++|++     -+...+.||..+++=..     +...+ ..+..-.++.. .+|++|++-|  ...++||..+.+
T Consensus       116 ~~~~Y~F-----kG~~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~~iDAAf~-~~g~~YfFkg--~~y~r~~~~~~~  183 (195)
T d1su3a2         116 TGKTYFF-----VANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFM-KDGFFYFFHG--TRQYKFDPKTKR  183 (195)
T ss_dssp             TTEEEEE-----ETTEEEEEETTTTEECSSCSEEHHHHSTTSCSCCSEEEE-ETTEEEEEET--TEEEEEETTTTE
T ss_pred             CCeEEEE-----eCCEEEEEeccCccccCCcccccccccCCCCCCccEEEE-ECCeEEEEEC--CEEEEEeCCcCE
Confidence            6799999     45567788887653110     11001 11122234444 7999999976  578999987654

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=5  Score=30.92  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=37.5

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCeEe-----cCCCCC-CCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCc
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKWKE-----MPEGMH-AGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDW  321 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W~~-----~~~~~~-~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~  321 (390)
                      ++++|++     -+...+.||..++.=..     +...++ .+..-.++.. .+|++|++-|  +..++||..+.+
T Consensus       112 ~~~~y~F-----kg~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~~vdAa~~-~~g~~YfF~g--~~y~r~~~~~~~  179 (192)
T d1pexa_         112 TGKTLLF-----SGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYE-KNGYIYFFNG--PIQFEYSIWSNR  179 (192)
T ss_dssp             TSEEEEE-----ETTEEEEEETTTTEECSSCCCBHHHHSTTSCSCCSEEEE-ETTEEEEEET--TEEEEEETTTTE
T ss_pred             CCEEEEE-----eCCEEEEEcCccccccCCCcEEHhhcCCCCCCCceEEEE-eCCEEEEEEC--CEEEEEeCCcCe
Confidence            6899999     45556788876653111     110011 1112223444 8999999975  588999987754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.37  E-value=5.9  Score=36.15  Aligned_cols=117  Identities=15%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             eEEEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCC-------CCCCCCceEEEeeCCeEEEEeCCCCcEEEEE
Q 016368          246 VEAVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGM-------HAGWNGPAASTMNEEELYVVNEGKGRLSKYD  316 (390)
Q Consensus       246 ~~~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~-------~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd  316 (390)
                      .+-++.+|+||+..    ....+.++|.+++  .|+.-+...       .........+. .+++||+.. .++.++.+|
T Consensus        60 stPiv~~g~vyv~t----~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~g~l~Ald  133 (560)
T d1kv9a2          60 ATPLFHDGVIYTSM----SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGT-LDGRLIALD  133 (560)
T ss_dssp             CCCEEETTEEEEEE----GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEEC-TTSEEEEEE
T ss_pred             eCCEEECCEEEEEC----CCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce-eCCeEEEEe-CCCEEEEEE
Confidence            34467999999985    3345778999877  588533210       01111223443 677776654 467899999


Q ss_pred             CCCCc--eEEccccccc--ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe
Q 016368          317 ADHDW--WDEVIELAEL--KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV  369 (390)
Q Consensus       317 ~~~~~--W~~i~~~p~~--r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~  369 (390)
                      .++.+  |+.-..-+..  .....-.+.++.+++-+..     ...|..+|+.+... .|..
T Consensus       134 a~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~-~W~~  194 (560)
T d1kv9a2         134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRF  194 (560)
T ss_dssp             TTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEE
T ss_pred             CCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceE-Eeee
Confidence            88764  7654322222  1223455678888775422     13699999988743 5874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.23  E-value=6.2  Score=36.10  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             EEEECCEEEEEcccCCCCceeEEEeCCCC--CeEecCCCC-------CCCCCCceEEEeeCCeEEEEeCCCCcEEEEECC
Q 016368          248 AVGFKGNLCMVNLKGNGAKDGAIYNVELD--KWKEMPEGM-------HAGWNGPAASTMNEEELYVVNEGKGRLSKYDAD  318 (390)
Q Consensus       248 ~~~~~g~lyv~gg~g~~~~~~~~yd~~~~--~W~~~~~~~-------~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~  318 (390)
                      -++.+|+||+..    ....+.++|.+++  .|+.-+...       .........++ .++++|+.. .++.++.+|.+
T Consensus        73 Piv~~g~vyv~t----~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~~~t-~~g~l~alda~  146 (573)
T d1kb0a2          73 PVVVDGIMYVSA----SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGA-WDGRLIALDAA  146 (573)
T ss_dssp             CEEETTEEEEEC----GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEEC-TTSEEEEEETT
T ss_pred             CEEECCEEEEEC----CCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-ECCcEEEEe-cccceeeeccc
Confidence            345899999985    2345788999877  587543210       01112223444 678877654 46788999988


Q ss_pred             CCc--eEEcc-ccccc--ccceeEEEECCEEEEEeeC-----CceEEEEEcCCCCCcceEe
Q 016368          319 HDW--WDEVI-ELAEL--KGAEKITAARGRVCAVCEN-----GERIMVVDVLASPARAWLV  369 (390)
Q Consensus       319 ~~~--W~~i~-~~p~~--r~~~~~~~~~g~l~i~g~~-----~~~v~~~d~~~~~~~~W~~  369 (390)
                      +.+  |+.-. ..+..  .......++++.|+|-+..     ...|..+|..+.. ..|+.
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~-~~W~~  206 (573)
T d1kb0a2         147 TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWRW  206 (573)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEE
T ss_pred             cccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCcc-ceeee
Confidence            765  76532 11111  1123356678888774322     2379999998763 35874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.66  E-value=4.9  Score=36.85  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCC-----ccccceEEEEECCEEEEEcccCCCC
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGR-----FSREAVEAVGFKGNLCMVNLKGNGA  265 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~-----~~r~~~~~~~~~g~lyv~gg~g~~~  265 (390)
                      -++.+++||+....         ..++++|.+|++  ..|+.-+..+...     ......+.+..++++|+..    ..
T Consensus        73 Piv~~g~vyv~t~~---------~~v~AlDa~TG~--~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t----~~  137 (573)
T d1kb0a2          73 PVVVDGIMYVSASW---------SVVHAIDTRTGN--RIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA----WD  137 (573)
T ss_dssp             CEEETTEEEEECGG---------GCEEEEETTTTE--EEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC----TT
T ss_pred             CEEECCEEEEECCC---------CeEEEEeCCCCC--eEEEeCCCCCcccccccccccccccceEECCcEEEEe----cc
Confidence            35779999986532         367889998877  3487543322110     0001234667899999874    33


Q ss_pred             ceeEEEeCCCC--CeEecCCCCCCCC--CCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368          266 KDGAIYNVELD--KWKEMPEGMHAGW--NGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       266 ~~~~~yd~~~~--~W~~~~~~~~~~~--~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~  324 (390)
                      ....++|.+++  .|+..........  .....++ .++.+++-+.     ..+.|..||.+|.+  |+.
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             cceeeeccccccceecccCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeee
Confidence            45678888776  4876432111111  1222233 7888776432     23478999998865  764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.10  E-value=2.4  Score=37.32  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=60.8

Q ss_pred             CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE---
Q 016368          264 GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA---  340 (390)
Q Consensus       264 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---  340 (390)
                      +...+.++|.++.+=...-+   .+..-+.++...||+...+.+.++.+.+||..+.+-..+.+++.......++..   
T Consensus        40 d~g~v~v~D~~t~~v~~~~~---~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CCCEEEEEECCCCcEEEEEe---CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            44557788988776543322   232333444446777666667788999999998876666655543333333321   


Q ss_pred             --CC-EEEEEeeCCceEEEEEcCCC
Q 016368          341 --RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 --~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                        +| .||+.+...+.+.+||..+.
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccc
Confidence              45 47777677788999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.46  E-value=2  Score=37.57  Aligned_cols=96  Identities=13%  Similarity=0.018  Sum_probs=57.7

Q ss_pred             CCceeEEEeCCCCCeEecCCCCCCCCCCceEEEeeCCeEEEEeCCCCcEEEEECCCCceEEcccccccccceeEEEE---
Q 016368          264 GAKDGAIYNVELDKWKEMPEGMHAGWNGPAASTMNEEELYVVNEGKGRLSKYDADHDWWDEVIELAELKGAEKITAA---  340 (390)
Q Consensus       264 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~---  340 (390)
                      +...+.++|.++.+=..  . ++.+..-++++...||+..++++.++.+.+||.++.+-..+.+++.......++..   
T Consensus        40 ~dg~v~vwD~~t~~~~~--~-l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVK--V-IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             TTTEEEEEETTTCSEEE--E-EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             CCCEEEEEECCCCcEEE--E-EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            34556788888775322  1 22222223344346888777777788999999998876665555443333333321   


Q ss_pred             --CC-EEEEEeeCCceEEEEEcCCC
Q 016368          341 --RG-RVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       341 --~g-~l~i~g~~~~~v~~~d~~~~  362 (390)
                        +| .+++.+..+..+.++|..+.
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCcc
Confidence              34 45665556678888887764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.31  E-value=7.9  Score=31.84  Aligned_cols=50  Identities=10%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             cEEEEECCCCceEEcccccccccceeEEEE-CCE--EEEEeeCCceEEEEEcCCC
Q 016368          311 RLSKYDADHDWWDEVIELAELKGAEKITAA-RGR--VCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       311 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~-~g~--l~i~g~~~~~v~~~d~~~~  362 (390)
                      .+..+|..+.+  .+..++......+++.. +|+  +|+.+...+.|.+||+.+.
T Consensus       281 ~v~v~d~~t~~--~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         281 FVVVLDAKTGE--RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EEEEEETTTCC--EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEEeCCCCc--EEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            78899988754  44444433333445444 554  5555555779999999876

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=7.1  Score=30.10  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=53.5

Q ss_pred             CCEEEEEcccCCCCceeEEEeCCCCCe-EecCC-CCCCCCCCc-eEEEeeCCeEEEEeCCCCcEEEEECCCCceE-----
Q 016368          252 KGNLCMVNLKGNGAKDGAIYNVELDKW-KEMPE-GMHAGWNGP-AASTMNEEELYVVNEGKGRLSKYDADHDWWD-----  323 (390)
Q Consensus       252 ~g~lyv~gg~g~~~~~~~~yd~~~~~W-~~~~~-~~~~~~~~~-~~~~~~~g~lyv~gg~~~~v~~yd~~~~~W~-----  323 (390)
                      ++++|++     -+...++|+-.+-.. +.+.. .+|...... ++....+|++|++-|  ...|+||..++.=.     
T Consensus        64 ~~k~yfF-----kg~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG--~~y~ryd~~~~~v~~gyPk  136 (195)
T d1itva_          64 SKKLFFF-----SGRQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--RRLWRFDVKAQMVDPRSAS  136 (195)
T ss_dssp             TCCEEEE-----ETTEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--TEEEEEETTTTEECGGGCE
T ss_pred             CCEEEEE-----ecCEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec--cEEEEEeCCcccccCCCcc
Confidence            6789988     345566776432111 11221 122222222 222224789999965  47899998875311     


Q ss_pred             Ecc----cccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          324 EVI----ELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       324 ~i~----~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      .|.    .+|  ....++...++.+|++ . +...+.+|..+.
T Consensus       137 ~i~~~w~gvp--~~idaAf~~~~~~Yff-k-g~~y~r~~~~~~  175 (195)
T d1itva_         137 EVDRMFPGVP--LDTHDVFQFREKAYFC-Q-DRFYWRVSSRSE  175 (195)
T ss_dssp             EHHHHSTTSC--SSCSEEEEETTEEEEE-E-TTEEEEEECCTT
T ss_pred             chhhhcCCCC--CCCcEEEEeCCcEEEE-E-CCEEEEEcCCce
Confidence            111    122  1223445568899998 4 346777776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.64  E-value=8  Score=35.33  Aligned_cols=119  Identities=11%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             EEEECCEEEEEeccCCCCCCCccCeEEEEECC-CCccccccEEcccCCCCCc-----cccceEEEEECCEEEEEcccCCC
Q 016368          191 MGSVGGVVYVASGVGAHYRGDVARSMKKWDLK-SDREDWKWEKKAQLKDGRF-----SREAVEAVGFKGNLCMVNLKGNG  264 (390)
Q Consensus       191 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~~~~~W~~~~~~~~~~~-----~r~~~~~~~~~g~lyv~gg~g~~  264 (390)
                      -.++++.||+..+..        ..+...|.. |++  ..|+.-+..+....     ....-..+..++++|+..    .
T Consensus        58 P~v~~g~vyv~t~~~--------~~v~Alda~~tG~--~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~----~  123 (571)
T d2ad6a1          58 PLVIGDMMYVHSAFP--------NNTYALNLNDPGK--IVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ----A  123 (571)
T ss_dssp             CEEETTEEEEECSTT--------TCEEEEETTCTTS--EEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC----T
T ss_pred             CEEECCEEEEecCCC--------CeEEEEeCCCCCc--eEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe----C
Confidence            457799999986432        256677753 443  22764332221100     000123566899999873    2


Q ss_pred             CceeEEEeCCCC--CeEe-cCCCCCCCCCCceEEEeeCCeEEEEeC-----CCCcEEEEECCCCc--eEE
Q 016368          265 AKDGAIYNVELD--KWKE-MPEGMHAGWNGPAASTMNEEELYVVNE-----GKGRLSKYDADHDW--WDE  324 (390)
Q Consensus       265 ~~~~~~yd~~~~--~W~~-~~~~~~~~~~~~~~~~~~~g~lyv~gg-----~~~~v~~yd~~~~~--W~~  324 (390)
                      .....+.|.+++  .|+. +....+......+-++ .++.+|+-..     ..+.+..||..|.+  |+.
T Consensus       124 ~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCcEEeeehhhhhhhccccccccccccceeecCeE-eCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            345678888887  4765 3221111112222233 7888887554     34589999998865  764

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.93  E-value=9.2  Score=29.31  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             CCeEEEEeCCCCcEEEEECCCCc-----eEEcccccccccceeEEEECCEEEEEeeCCceEEEEEcCCC
Q 016368          299 EEELYVVNEGKGRLSKYDADHDW-----WDEVIELAELKGAEKITAARGRVCAVCENGERIMVVDVLAS  362 (390)
Q Consensus       299 ~g~lyv~gg~~~~v~~yd~~~~~-----W~~i~~~p~~r~~~~~~~~~g~l~i~g~~~~~v~~~d~~~~  362 (390)
                      ++++|++-|  +..|+||..+..     |..++     .. .++...+|++|++ . +...+.+|..+.
T Consensus       110 ~~~~yfFkg--~~yw~yd~~~~~~~~~~w~gip-----~~-daA~~~~g~~YfF-k-g~~y~r~~~~~~  168 (192)
T d1qhua1         110 DEGILFFQG--NRKWFWDLTTGTKKERSWPAVG-----NC-TSALRWLGRYYCF-Q-GNQFLRFNPVSG  168 (192)
T ss_dssp             SSEEEEEET--TEEEEEETTTTEEEEECCTTSC-----CC-SEEEEETTEEEEE-E-TTEEEEECTTTC
T ss_pred             CCeEEEEeC--CeEEEEeCCCCCcccccccCcC-----Cc-ceeEEeCCcEEEE-E-CCEEEEEcCCcc
Confidence            789999976  478999988753     43332     12 2344568999999 3 357788876654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.61  E-value=11  Score=29.90  Aligned_cols=172  Identities=9%  Similarity=-0.026  Sum_probs=80.2

Q ss_pred             CcEEEeCCCCceecCCCCCCCCcceEEEEECCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCcccc
Q 016368          165 SPLAFNPQSNTWFFGPQLSIPRRWCAMGSVGGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSRE  244 (390)
Q Consensus       165 ~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~  244 (390)
                      .+..++..+++....-...   ....+...++..+++|+.+.       +.+.+|+.....    -......+....   
T Consensus       102 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~-------~~v~~~~~~~~~----~~~~~~~~~~~~---  164 (287)
T d1pgua2         102 DLLILQSFTGDIIKSVRLN---SPGSAVSLSQNYVAVGLEEG-------NTIQVFKLSDLE----VSFDLKTPLRAK---  164 (287)
T ss_dssp             EEEEEETTTCCEEEEEECS---SCEEEEEECSSEEEEEETTT-------SCEEEEETTEEE----EEEECSSCCSSC---
T ss_pred             cceeeeccceeeeeecccc---ceeeeeeccCcceeeecccc-------ceeeeeeccccc----eeeeeeeccCCc---
Confidence            4666777666554322111   11233444666666776653       257778875433    111111111111   


Q ss_pred             ceEEEE-ECCEEEEEcccCCCCceeEEEeCCCCCeEecCCCCCCCC----------CCceEEEeeCCeEEEEeCCCCcEE
Q 016368          245 AVEAVG-FKGNLCMVNLKGNGAKDGAIYNVELDKWKEMPEGMHAGW----------NGPAASTMNEEELYVVNEGKGRLS  313 (390)
Q Consensus       245 ~~~~~~-~~g~lyv~gg~g~~~~~~~~yd~~~~~W~~~~~~~~~~~----------~~~~~~~~~~g~lyv~gg~~~~v~  313 (390)
                      ..+++. .+++..+.|.   ....+.+||..+..-..........+          ...... ..++.+++.|+.++.+.
T Consensus       165 v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         165 PSYISISPSETYIAAGD---VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE-EIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-------CCSCCEEEEEETTSCEE
T ss_pred             eeEEEeccCcccccccc---ccccccceeecccccccccccccccccceeeecccccccccc-cCCCCeeEeecCCCeEE
Confidence            122222 2566555531   23346788887654322111000000          001111 15677888888899999


Q ss_pred             EEECCCCceEEcccccccccc-eeEEEE-CCEEEEEeeCCceEEEEEc
Q 016368          314 KYDADHDWWDEVIELAELKGA-EKITAA-RGRVCAVCENGERIMVVDV  359 (390)
Q Consensus       314 ~yd~~~~~W~~i~~~p~~r~~-~~~~~~-~g~l~i~g~~~~~v~~~d~  359 (390)
                      .||.++.. ..+..+...... .++... +++++- ++.+..|.+||+
T Consensus       241 iw~~~~~~-~~~~~~~~h~~~V~~v~~~~~~~l~s-~g~D~~v~iW~i  286 (287)
T d1pgua2         241 IYSVKRPM-KIIKALNAHKDGVNNLLWETPSTLVS-SGADACIKRWNV  286 (287)
T ss_dssp             EEESSCTT-CCEEETTSSTTCEEEEEEEETTEEEE-EETTSCEEEEEE
T ss_pred             EEECCCCC-eEEEEeCCCCCCeEEEEECCCCEEEE-EECCCeEEEEEE
Confidence            99986522 111212122222 233333 555444 455668888875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=80.85  E-value=10  Score=30.63  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             CEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCccccceEEEE-ECCE-EEEEcccCCCCceeEEEeC
Q 016368          196 GVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRFSREAVEAVG-FKGN-LCMVNLKGNGAKDGAIYNV  273 (390)
Q Consensus       196 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~~r~~~~~~~-~~g~-lyv~gg~g~~~~~~~~yd~  273 (390)
                      ..+||.+..+.        .+.+||..++..   .+.+.....+..   ...++. -+|+ ||+.+   .....+.+|+.
T Consensus         4 ~~v~v~~~~~~--------~I~v~~~~~~~~---l~~~~~~~~~~~---v~~la~spDG~~L~v~~---~~d~~i~~~~i   66 (333)
T d1ri6a_           4 QTVYIASPESQ--------QIHVWNLNHEGA---LTLTQVVDVPGQ---VQPMVVSPDKRYLYVGV---RPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEEGGGT--------EEEEEEECTTSC---EEEEEEEECSSC---CCCEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred             eEEEEECCCCC--------cEEEEEEcCCCC---eEEEEEEcCCCC---EeEEEEeCCCCEEEEEE---CCCCeEEEEEE
Confidence            34788876553        778888754431   344432222211   122332 3555 66653   12345677887


Q ss_pred             CCCCeEe--cCCCCCCCCCCceEEEeeCCe-EEEEeCCCCcEEEEECCCCceEEccc-ccccccceeEEEE-CC-EEEEE
Q 016368          274 ELDKWKE--MPEGMHAGWNGPAASTMNEEE-LYVVNEGKGRLSKYDADHDWWDEVIE-LAELKGAEKITAA-RG-RVCAV  347 (390)
Q Consensus       274 ~~~~W~~--~~~~~~~~~~~~~~~~~~~g~-lyv~gg~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~-~g-~l~i~  347 (390)
                      ..+.+..  ... ......-..+++.-+|+ ||+.+..++.+..|+.+...-..... .......+++... ++ .+++.
T Consensus        67 ~~~~~~~~~~~~-~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~  145 (333)
T d1ri6a_          67 APDDGALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP  145 (333)
T ss_dssp             CTTTCCEEEEEE-EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred             eCCCCcEEEeee-cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence            7665542  222 21222222344325555 55554445677777766544322221 1122223333333 33 34444


Q ss_pred             eeCCceEEEEEcCCC
Q 016368          348 CENGERIMVVDVLAS  362 (390)
Q Consensus       348 g~~~~~v~~~d~~~~  362 (390)
                      ......+.+++....
T Consensus       146 ~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         146 ALKQDRICLFTVSDD  160 (333)
T ss_dssp             EGGGTEEEEEEECTT
T ss_pred             ccccceeeEEEeccC
Confidence            333456667766543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.78  E-value=16  Score=31.28  Aligned_cols=95  Identities=15%  Similarity=-0.009  Sum_probs=49.3

Q ss_pred             CCCcEEEeCCCCceecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCCCccCeEEEEECCCCccccccEEcccCCCCCc
Q 016368          163 LASPLAFNPQSNTWFFGPQLSIPRRWCAMGSV-GGVVYVASGVGAHYRGDVARSMKKWDLKSDREDWKWEKKAQLKDGRF  241 (390)
Q Consensus       163 ~~~~~~~dp~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~~~~~W~~~~~~~~~~~  241 (390)
                      -+.+.++|..|++-..  .++....-++++.- +|+..+.++.+.        .+.+||..|.+    -..+..++....
T Consensus        41 dg~v~vwD~~t~~~~~--~l~~g~~~~~vafSPDGk~l~~~~~d~--------~v~vwd~~t~~----~~~~~~i~~~~~  106 (426)
T d1hzua2          41 AGQIALVDGDSKKIVK--VIDTGYAVHISRMSASGRYLLVIGRDA--------RIDMIDLWAKE----PTKVAEIKIGIE  106 (426)
T ss_dssp             TTEEEEEETTTCSEEE--EEECCSSEEEEEECTTSCEEEEEETTS--------EEEEEETTSSS----CEEEEEEECCSE
T ss_pred             CCEEEEEECCCCcEEE--EEeCCCCeeEEEECCCCCEEEEEeCCC--------CEEEEEccCCc----eeEEEEEeCCCC
Confidence            3678999999886532  22222223334333 565444444432        68899999887    554443332221


Q ss_pred             cccceEEEE-----ECCE-EEEEcccCCCCceeEEEeCCCCC
Q 016368          242 SREAVEAVG-----FKGN-LCMVNLKGNGAKDGAIYNVELDK  277 (390)
Q Consensus       242 ~r~~~~~~~-----~~g~-lyv~gg~g~~~~~~~~yd~~~~~  277 (390)
                         ....+.     -+|+ +|+.+   .......++|.++..
T Consensus       107 ---~~~~~~s~~~spDG~~l~v~~---~~~~~v~i~d~~~~~  142 (426)
T d1hzua2         107 ---ARSVESSKFKGYEDRYTIAGA---YWPPQFAIMDGETLE  142 (426)
T ss_dssp             ---EEEEEECCSTTCTTTEEEEEE---EESSEEEEEETTTCC
T ss_pred             ---CcceEEeeeecCCCCEEEEee---cCCCeEEEEcCCccc
Confidence               111221     1455 44442   123456678877764