Citrus Sinensis ID: 016407

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MLQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLFSSEYSQASSSRPKEGMAAVFQEISSKPVTAGLRKVTGDMKTKNRADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG
ccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEcccccEEEEccccccEEEEEEEcccEEEEccEEEEEEEEccccEEEEEEEEEEEEEEEEcccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEEccEEEEEcccccccccccccccccEEEEEEccEEEEEEEEcccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccEcccccccccHHHccccccccccccccccccccccccccHHHHEccEEEEEccEcccccEEEEcccccEEEEEEEEEEEEEEEccEcEEEEEEEEEEEEEEccEcccEEEEEEEcEEEEEcccccEEEEEccEEEEEEccHHHcccEEEEEccEEEEEEEcccccccccEEccccHHHEEEEccccEEEEEEEcccc
MLQKPDLVGLAEFLKPLNEVIMKANamtegrrsDFFNHLKSAADSLTALAWIAYTgkdcgmsmpiahVEESWQMAEFYSNKILVeyrskdpnHVEWARALKELYLPGlrdyvkshyplgpvwsatgktvtsapakapsptapahkpgapappppppsslfsseysqasssrpkEGMAAVFQEIsskpvtagLRKVtgdmktknradrsgvvaagekesrtsspsfskagppklelQMGRKWVVENqigrknlviddcdakqsvyvfgcKDSVLQIQGKvnnitidkctkmGVVFKDVVAAFEIVNCngveaqcqgsaptisvdntggcqlylsqdslgasittaksseinvlvpgagpdsdwaehalpqqfvhtykdghfettpvshsgg
MLQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLFSSEYSQASSSRPKEGMAAVFQeisskpvtaglrkvtgdmktknradrsgvvaagekesrtsspsfskagppklELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG
MLQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVtsapakapsptapahkpgapappppppSSLFSSEYSQASSSRPKEGMAAVFQEISSKPVTAGLRKVTGDMKTKNRADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG
******LVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSAT***************************************************************************************************************MGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAG***DWAEHALPQQFVHTYK**************
**QK****GLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSA***********************************************************SSKPVTAGLRK********************************************RKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPV*HS**
MLQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATG*************************************************MAAVFQEISSKPVTAGLRKVTGD********************************PKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFE*********
*LQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSAT***********************PAPPPPPPSS****************************PVTAGLRKVTG*******************************GPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLQKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLFSSEYSQASSSRPKEGMAAVFQEISSKPVTAGLRKVTGDMKTKNRADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
P54654464 Adenylyl cyclase-associat yes no 0.920 0.773 0.376 1e-64
P52481477 Adenylyl cyclase-associat yes no 0.943 0.771 0.384 3e-61
Q9CYT6476 Adenylyl cyclase-associat yes no 0.943 0.773 0.379 3e-60
P40123477 Adenylyl cyclase-associat yes no 0.946 0.773 0.374 1e-59
Q5R5X8477 Adenylyl cyclase-associat yes no 0.946 0.773 0.376 9e-59
Q01518475 Adenylyl cyclase-associat no no 0.948 0.778 0.385 1e-58
Q08163474 Adenylyl cyclase-associat no no 0.948 0.780 0.39 2e-57
P40124474 Adenylyl cyclase-associat no no 0.948 0.780 0.392 2e-57
Q3SYV4472 Adenylyl cyclase-associat yes no 0.948 0.783 0.385 3e-57
Q4R4I6475 Adenylyl cyclase-associat N/A no 0.948 0.778 0.39 3e-56
>sp|P54654|CAP_DICDI Adenylyl cyclase-associated protein OS=Dictyostelium discoideum GN=cap PE=1 SV=1 Back     alignment and function desciption
 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 215/388 (55%), Gaps = 29/388 (7%)

Query: 3   QKPDLVGLAEFLKPLNEVIMKANAMTEGRRSD-FFNHLKSAADSLTALAWIAYTGKDCGM 61
           +KP    L E +KPLN    +   + +  RS  FFN+L + ++S+  L+W+         
Sbjct: 102 KKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVE------ 155

Query: 62  SMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPV 121
             P  HV E    AEFY+N+IL E++  + + V+W       +L  L  Y+K ++  G  
Sbjct: 156 PTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVN-FLKDLEKYIKQYHTTGLT 214

Query: 122 WSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLFSSEYSQASSSRPKEGMAAVFQ 181
           W+  G    SA     S    A    A +  P                S+   G+ AVF 
Sbjct: 215 WNPKGGDAKSATPAPASSAPAAPVAPAVSSTPV--------------ESKKGPGLGAVFG 260

Query: 182 EISS-KPVTAGLRKVTGDMKTKNRADRSGVV-AAGEKESRTSSPSFSKAGPPKLELQMGR 239
           E+S    VT+GL+KVT DMK+KN  D+S VV AA  K ++  +PS     P    LQ G 
Sbjct: 261 ELSKGDGVTSGLKKVTNDMKSKNFTDKSSVVKAADTKVAKVDAPS----RPAVFALQ-GN 315

Query: 240 KWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVA 299
           KW +E Q+  K +VI + D++Q+VY+F C +S++QI+GKVN IT+D C K  +VF++ ++
Sbjct: 316 KWSIEYQVNNKEIVIAEPDSRQTVYIFQCVNSLVQIKGKVNAITLDGCKKTSIVFENAIS 375

Query: 300 AFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPD 359
           + E+VNCNGVE Q  G  P+I++D T GCQ+YLS+DSL   I ++KSSE+NVL+PGA  +
Sbjct: 376 SCEVVNCNGVEIQVTGRVPSIAIDKTSGCQIYLSKDSLETEIVSSKSSEMNVLIPGATEN 435

Query: 360 SDWAEHALPQQFVHTYKDGHFETTPVSH 387
            D  E A+P+Q+  + K     T   SH
Sbjct: 436 DDLVELAIPEQYKTSVKGNKLHTESTSH 463
May have a regulatory bifunctional role. Binds G-actin and PIP2. Involved in microfilament reorganization near the plasma membrane in a PIP2-regulated manner.
Dictyostelium discoideum (taxid: 44689)
>sp|P52481|CAP2_RAT Adenylyl cyclase-associated protein 2 OS=Rattus norvegicus GN=Cap2 PE=2 SV=1 Back     alignment and function description
>sp|Q9CYT6|CAP2_MOUSE Adenylyl cyclase-associated protein 2 OS=Mus musculus GN=Cap2 PE=1 SV=1 Back     alignment and function description
>sp|P40123|CAP2_HUMAN Adenylyl cyclase-associated protein 2 OS=Homo sapiens GN=CAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R5X8|CAP2_PONAB Adenylyl cyclase-associated protein 2 OS=Pongo abelii GN=CAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q01518|CAP1_HUMAN Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5 Back     alignment and function description
>sp|Q08163|CAP1_RAT Adenylyl cyclase-associated protein 1 OS=Rattus norvegicus GN=Cap1 PE=1 SV=3 Back     alignment and function description
>sp|P40124|CAP1_MOUSE Adenylyl cyclase-associated protein 1 OS=Mus musculus GN=Cap1 PE=1 SV=4 Back     alignment and function description
>sp|Q3SYV4|CAP1_BOVIN Adenylyl cyclase-associated protein 1 OS=Bos taurus GN=CAP1 PE=2 SV=3 Back     alignment and function description
>sp|Q4R4I6|CAP1_MACFA Adenylyl cyclase-associated protein 1 OS=Macaca fascicularis GN=CAP1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
224080331466 predicted protein [Populus trichocarpa] 0.961 0.804 0.838 0.0
224103421468 predicted protein [Populus trichocarpa] 0.964 0.803 0.846 1e-180
359475312472 PREDICTED: adenylyl cyclase-associated p 0.976 0.807 0.832 1e-179
345103939471 adenylyl cyclase-associated protein [Gos 0.971 0.804 0.826 1e-178
345103903471 adenylyl cyclase-associated protein [Gos 0.971 0.804 0.826 1e-178
345103935471 adenylyl cyclase-associated protein [Gos 0.971 0.804 0.826 1e-178
345103943471 adenylyl cyclase-associated protein [Gos 0.971 0.804 0.826 1e-178
156938963471 adenylyl cyclase-associated protein [Gos 0.971 0.804 0.826 1e-176
325464685471 adenylyl cyclase associated protein [Gos 0.971 0.804 0.826 1e-176
325464689471 adenylyl cyclase associated protein [Gos 0.971 0.804 0.826 1e-176
>gi|224080331|ref|XP_002306100.1| predicted protein [Populus trichocarpa] gi|222849064|gb|EEE86611.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/389 (83%), Positives = 346/389 (88%), Gaps = 14/389 (3%)

Query: 3   QKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMS 62
           QKPDL GLAEFLKPLNEVIMKAN+MTEGRRSDFFNHLK+AADS TALAWIAYTGKDCGMS
Sbjct: 91  QKPDLAGLAEFLKPLNEVIMKANSMTEGRRSDFFNHLKAAADSSTALAWIAYTGKDCGMS 150

Query: 63  MPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVW 122
           MPIAHVEESWQMAEFY+NKILVEY+SKDPNHVEWA+ALKELYLPGLRDYVKSHYPLGPVW
Sbjct: 151 MPIAHVEESWQMAEFYNNKILVEYKSKDPNHVEWAKALKELYLPGLRDYVKSHYPLGPVW 210

Query: 123 SATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLFSSEYSQASSSRPKEGMAAVFQE 182
           SAT K   +AP+    P  P              +SLF+SE S  SSS+PK GMAAVFQE
Sbjct: 211 SATAKAKAAAPSAPAPPPPPP-------------ASLFTSESSSPSSSKPKVGMAAVFQE 257

Query: 183 ISS-KPVTAGLRKVTGDMKTKNRADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKW 241
           ISS KPVT+GLRKVT +MKTKNRADR+GVV A EKESRTSSPSFSKAGPPKLELQMGRKW
Sbjct: 258 ISSGKPVTSGLRKVTDNMKTKNRADRTGVVGASEKESRTSSPSFSKAGPPKLELQMGRKW 317

Query: 242 VVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAF 301
           VVENQIGRKNLVIDDCDAKQSVY+FGCKDSVLQ+QGKVNNITIDKCTKMGVVF DVVAA 
Sbjct: 318 VVENQIGRKNLVIDDCDAKQSVYIFGCKDSVLQVQGKVNNITIDKCTKMGVVFTDVVAAC 377

Query: 302 EIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSD 361
           EIVNC+GVE QCQGSAPTISVDNTGGCQLYLS+ SLGASITTAKSSEIN+LVPGA PD D
Sbjct: 378 EIVNCSGVEVQCQGSAPTISVDNTGGCQLYLSKGSLGASITTAKSSEINILVPGAEPDGD 437

Query: 362 WAEHALPQQFVHTYKDGHFETTPVSHSGG 390
             EHALPQQF+HT+KDG FETTPVSHSGG
Sbjct: 438 LVEHALPQQFIHTFKDGQFETTPVSHSGG 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224103421|ref|XP_002313050.1| predicted protein [Populus trichocarpa] gi|222849458|gb|EEE87005.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359475312|ref|XP_003631649.1| PREDICTED: adenylyl cyclase-associated protein 1-like [Vitis vinifera] gi|297741452|emb|CBI32583.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|345103939|gb|AEN70791.1| adenylyl cyclase-associated protein [Gossypium aridum] Back     alignment and taxonomy information
>gi|345103903|gb|AEN70773.1| adenylyl cyclase-associated protein [Gossypium schwendimanii] Back     alignment and taxonomy information
>gi|345103935|gb|AEN70789.1| adenylyl cyclase-associated protein [Gossypium davidsonii] gi|345103937|gb|AEN70790.1| adenylyl cyclase-associated protein [Gossypium klotzschianum] Back     alignment and taxonomy information
>gi|345103943|gb|AEN70793.1| adenylyl cyclase-associated protein [Gossypium lobatum] Back     alignment and taxonomy information
>gi|156938963|gb|ABU97498.1| adenylyl cyclase-associated protein [Gossypium arboreum] gi|156938965|gb|ABU97499.1| adenylyl cyclase-associated protein [Gossypium arboreum] Back     alignment and taxonomy information
>gi|325464685|gb|ADZ16112.1| adenylyl cyclase associated protein [Gossypium barbadense] gi|345103911|gb|AEN70777.1| adenylyl cyclase-associated protein [Gossypium darwinii] gi|345103915|gb|AEN70779.1| adenylyl cyclase-associated protein [Gossypium tomentosum] gi|345103923|gb|AEN70783.1| adenylyl cyclase-associated protein [Gossypium barbadense var. peruvianum] Back     alignment and taxonomy information
>gi|325464689|gb|ADZ16114.1| adenylyl cyclase associated protein [Gossypium herbaceum subsp. africanum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2139539476 CAP1 "cyclase associated prote 0.961 0.787 0.737 2.8e-153
ZFIN|ZDB-GENE-030131-6459463 cap1 "Cap1 CAP, adenylate cycl 0.566 0.477 0.435 3.7e-62
UNIPROTKB|F1SMC0376 CAP1 "Adenylyl cyclase-associa 0.564 0.585 0.438 1.6e-59
MGI|MGI:88262474 Cap1 "CAP, adenylate cyclase-a 0.569 0.468 0.434 1.6e-59
RGD|620310477 Cap2 "CAP, adenylate cyclase-a 0.533 0.436 0.427 1.6e-59
UNIPROTKB|P52481477 Cap2 "Adenylyl cyclase-associa 0.533 0.436 0.427 1.6e-59
RGD|620309474 Cap1 "CAP, adenylate cyclase-a 0.564 0.464 0.434 3.3e-59
UNIPROTKB|A6QLB7471 CAP1 "Adenylyl cyclase-associa 0.564 0.467 0.426 4.2e-59
UNIPROTKB|Q3SYV4472 CAP1 "Adenylyl cyclase-associa 0.564 0.466 0.426 4.2e-59
UNIPROTKB|P40123477 CAP2 "Adenylyl cyclase-associa 0.561 0.459 0.410 4.2e-59
TAIR|locus:2139539 CAP1 "cyclase associated protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
 Identities = 286/388 (73%), Positives = 327/388 (84%)

Query:     3 QKPDLVGLAEFLKPLNEVIMKANAMTEGRRSDFFNHLKSAADSLTALAWIAYTGKDCGMS 62
             QKPDL GLA FLKPLN+V MKANAMTEG+RSDFFNHLK+A DSL+ALAWIA+TGKDCGMS
Sbjct:   100 QKPDLAGLAGFLKPLNDVTMKANAMTEGKRSDFFNHLKAACDSLSALAWIAFTGKDCGMS 159

Query:    63 MPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVW 122
             MPIAHVEESWQMAEFY+NK+LVEYR+KD +HVEWA+ALKELYLPGLR+YVKSHYPLGPVW
Sbjct:   160 MPIAHVEESWQMAEFYNNKVLVEYRNKDADHVEWAKALKELYLPGLREYVKSHYPLGPVW 219

Query:   123 SATGKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFSSEYSQ-ASSSRPKEGMAAVFQ 181
             +A+GK                             + LFS+E S+ +SSS  K+GM+AVFQ
Sbjct:   220 NASGKPASAPAKGPPGAPAPPP------------APLFSAESSKPSSSSNQKQGMSAVFQ 267

Query:   182 EISSKPVTAGLRKVTGDMKTKNRADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKW 241
             ++SS  VT+GLRKVT DMKTKNRADRSG V+A EKE+RTS P+FSK GPPK+ELQMGRKW
Sbjct:   268 QLSSGAVTSGLRKVTDDMKTKNRADRSGAVSAVEKETRTSKPAFSKTGPPKMELQMGRKW 327

Query:   242 VVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAF 301
              VENQIG+K+LVI +CD+KQSVY++GCKDSVLQIQGKVNNITIDKCTK+GVVF DVVAAF
Sbjct:   328 AVENQIGKKDLVISECDSKQSVYIYGCKDSVLQIQGKVNNITIDKCTKVGVVFTDVVAAF 387

Query:   302 EIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSD 361
             EIVNCN VE QCQGSAPT+SVDNT GCQLYL++DSL  +ITTAKSSEINV+VPGA PD D
Sbjct:   388 EIVNCNNVEVQCQGSAPTVSVDNTTGCQLYLNKDSLETAITTAKSSEINVMVPGATPDGD 447

Query:   362 WAEHALPQQFVHTYKDGHFETTPVSHSG 389
             W EHALPQQ+ H + +G FETTPVSHSG
Sbjct:   448 WVEHALPQQYNHVFTEGKFETTPVSHSG 475
GO:0000902 "cell morphogenesis" evidence=IEA
GO:0003779 "actin binding" evidence=IEA;IPI
GO:0005886 "plasma membrane" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0030036 "actin cytoskeleton organization" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
ZFIN|ZDB-GENE-030131-6459 cap1 "Cap1 CAP, adenylate cyclase-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMC0 CAP1 "Adenylyl cyclase-associated protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:88262 Cap1 "CAP, adenylate cyclase-associated protein 1 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620310 Cap2 "CAP, adenylate cyclase-associated protein, 2 (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P52481 Cap2 "Adenylyl cyclase-associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|620309 Cap1 "CAP, adenylate cyclase-associated protein 1 (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLB7 CAP1 "Adenylyl cyclase-associated protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYV4 CAP1 "Adenylyl cyclase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P40123 CAP2 "Adenylyl cyclase-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam08603157 pfam08603, CAP_C, Adenylate cyclase associated (CA 5e-80
pfam01213313 pfam01213, CAP_N, Adenylate cyclase associated (CA 1e-44
smart0067338 smart00673, CARP, Domain in CAPs (cyclase-associat 3e-09
smart0067338 smart00673, CARP, Domain in CAPs (cyclase-associat 1e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
>gnl|CDD|203997 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal Back     alignment and domain information 
 Score =  242 bits (619), Expect = 5e-80
 Identities = 79/159 (49%), Positives = 109/159 (68%), Gaps = 2/159 (1%)

Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
           PPK EL+ G+KW VENQ G KNLV+ + + KQSVY+F C +S +QI+GKVN I++D C K
Sbjct: 1   PPKKELE-GKKWFVENQEGEKNLVLIETELKQSVYIFKCNNSTIQIKGKVNAISLDNCKK 59

Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
             +VF  +V++ E++NC  V+ Q  G  PTIS+D T GCQ+YLS++SL   I ++KSSE+
Sbjct: 60  CSLVFDSLVSSVEVINCKSVKIQVLGKVPTISIDKTDGCQIYLSKESLNTEIVSSKSSEM 119

Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHS 388
           N+ VP  G D D+ E  LP+QF  T  +G   T  V H+
Sbjct: 120 NINVPT-GEDGDYKELPLPEQFKTTIDNGKLVTEVVEHA 157

Length = 157
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal Back     alignment and domain information
>gnl|CDD|197827 smart00673, CARP, Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product Back     alignment and domain information
>gnl|CDD|197827 smart00673, CARP, Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
KOG2675480 consensus Adenylate cyclase-associated protein (CA 100.0
PF01213312 CAP_N: Adenylate cyclase associated (CAP) N termin 100.0
PF08603159 CAP_C: Adenylate cyclase associated (CAP) C termin 100.0
KOG2675480 consensus Adenylate cyclase-associated protein (CA 99.0
smart0067338 CARP Domain in CAPs (cyclase-associated proteins) 98.51
smart0067338 CARP Domain in CAPs (cyclase-associated proteins) 98.48
PF08603159 CAP_C: Adenylate cyclase associated (CAP) C termin 98.29
PF07986120 TBCC: Tubulin binding cofactor C; InterPro: IPR012 98.07
PF07986120 TBCC: Tubulin binding cofactor C; InterPro: IPR012 96.99
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 94.24
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 92.84
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 92.83
KOG4462 437 consensus WASP-interacting protein VRP1/WIP, conta 92.69
KOG4416 605 consensus Uncharacterized conserved protein [Funct 92.07
PF0220530 WH2: WH2 motif; InterPro: IPR003124 The WH2 (WASP- 80.63
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-140  Score=1053.94  Aligned_cols=375  Identities=45%  Similarity=0.748  Sum_probs=334.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHHHHHHHhhcCC-CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhh
Q 016407            2 LQKPDLVGLAEFLKPLNEVIMKANAMTEGRR-SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSN   80 (390)
Q Consensus         2 ~kkP~~~~~~~lL~Pl~~~i~~v~~~ke~~r-s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~N   80 (390)
                      ++||+..+|+++|+||++.|.+|++|||+|| |+|||||+||+||+++||||++++      +|++||+||+|+||||+|
T Consensus        99 ~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~------tP~p~vke~~daa~FY~N  172 (480)
T KOG2675|consen   99 KQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKP------TPAPYVKEFKDAAQFYTN  172 (480)
T ss_pred             ccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCC------CCchHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999 999999999999999999999997      799999999999999999


Q ss_pred             HHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016407           81 KILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLF  160 (390)
Q Consensus        81 rVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN~~G~~~~~~~~~~~~~~~~~~~~~~PpPPPpPp~~~~  160 (390)
                      |||||||++|+.||||||+|+.|| .+|++|||+||+|||+||..|..++++.+.+..+  .++++||||||||||++.+
T Consensus       173 rvLkEyk~~D~~hveWvKa~l~l~-~eL~~YVk~hhtTGl~W~~~g~~~~~~sa~~~~~--s~~g~PPPPPP~PPp~~~~  249 (480)
T KOG2675|consen  173 RVLKEYKEKDPRHVEWVKAYLALF-LELQAYVKEHHTTGLVWNKDGGAAPDASASPKAA--SAPGAPPPPPPAPPPAPFF  249 (480)
T ss_pred             HHHHHhccCChhHHHHHHHHHHHH-HHHHHHHHHhccccceecCCCCcccccccCcCcc--cCCCCCCCCCCCCCCcccc
Confidence            999999999999999999999986 8899999999999999999999888776532211  1122233333333333333


Q ss_pred             CCcccccCCCCCccchhhhhhhhccCC-cccCccccCCcccc-cCCcccCCcccCCCCCC----CCCCCCCCCCCCCcee
Q 016407          161 SSEYSQASSSRPKEGMAAVFQEISSKP-VTAGLRKVTGDMKT-KNRADRSGVVAAGEKES----RTSSPSFSKAGPPKLE  234 (390)
Q Consensus       161 ~~~~~~~~~~~~~~~~~avFa~lN~G~-iT~gLkkV~~~~~T-KNp~lr~~~~~~~~~~~----~~~~~~~~~kkpp~~e  234 (390)
                      ... ..+++++..++|+|||||||||| ||+||||||+|||| |||+||++++++...++    +++++.+++++||++|
T Consensus       250 ~~~-~~~~~~~~k~~~~AlFaqlNqGe~iTsgLkkVt~dmkThKNP~LR~~~~~~~~~~~~~~~~Psk~~~~~k~pp~~E  328 (480)
T KOG2675|consen  250 ADS-NPPSSDANKGGRGALFAQLNQGEGITSGLKKVTDDMKTHKNPNLRATSGVPASGPKQGSSSPSKSAAPKKKPPVKE  328 (480)
T ss_pred             ccc-CCCCcccccccHHHHHHHHhccchhhhhhhhCChhhhcccChhhhccCCCCCCCCCCCCCCCCcccCCCCCCCcee
Confidence            322 21234556788999999999999 99999999999999 99999999876642111    2233456899999999


Q ss_pred             eecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEe
Q 016407          235 LQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQ  314 (390)
Q Consensus       235 l~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~  314 (390)
                      |+ |+||+||||+|+.+++|++++++|+||||+|+|++|+|+||+|+|+||+|+|++||||++|+.+|||||++|+|||+
T Consensus       329 Le-GkkW~VEnq~~~~~~Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~  407 (480)
T KOG2675|consen  329 LE-GKKWRVENQENNKNLVIDDAELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVM  407 (480)
T ss_pred             ec-cceEEEeeecCCcceeeeeccccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEc
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeeccc
Q 016407          315 GSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHS  388 (390)
Q Consensus       315 g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~  388 (390)
                      |.+|||+|||||||+||||++||+|||+|||||+|||++|.+ |||||+||||||||+|.|++|||+|+++||+
T Consensus       408 g~~PtiSI~ktdGc~iYLSk~sL~~eIvtsKSsemNi~vp~~-~dgDy~EfpvPEQfkt~~~~~Klvt~v~ei~  480 (480)
T KOG2675|consen  408 GSVPTISIDKTDGCHIYLSKDSLDCEIVTSKSSEMNINVPTN-EDGDYVEFPVPEQFKTKFNGGKLVTTVVEIA  480 (480)
T ss_pred             ccCCeEEEecCCCeeEEeccccccceEEeecccceeEecccC-CCCCcccccChHHHhhhccCcEEEEeeeecC
Confidence            999999999999999999999999999999999999999976 6899999999999999999999999999996

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals Back     alignment and domain information
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals Back     alignment and domain information
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product Back     alignment and domain information
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product Back     alignment and domain information
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals Back     alignment and domain information
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC) Back     alignment and domain information
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC) Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton] Back     alignment and domain information
>KOG4416 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02205 WH2: WH2 motif; InterPro: IPR003124 The WH2 (WASP-Homology 2, or Wiskott-Aldrich homology 2) domain is an ~18 amino acids actin-binding motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1k8f_A157 Crystal Structure Of The Human C-Terminal Cap1-Aden 7e-36
1k4z_A159 C-Terminal Domain Of Cyclase Associated Protein Len 1e-23
1kq5_A159 C-Terminal Domain Of Cyclase Associated Protein Wit 8e-23
2b0r_A202 Crystal Structure Of Cyclase-Associated Protein Fro 4e-20
1tjf_A186 The Crystal Structure Of The N-Terminal Domain Of C 2e-11
1s0p_A176 Structure Of The N-Terminal Domain Of The Adenylyl 3e-11
>pdb|1K8F|A Chain A, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl Cyclase Associated Protein Length = 157 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 104/161 (64%), Gaps = 4/161 (2%)
Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
           P  LEL+ G+KW VENQ    NLVI+D + KQ  Y++ C ++ LQI+GK+N+IT+D C K
Sbjct: 1   PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKK 59
Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
           +G+VF DVV   EI+N   V+ Q  G  PTIS++ T GC  YLS++SL   I +AKSSE+
Sbjct: 60  LGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEM 119
Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG 390
           NVL+P  G   D+ E  +P+QF  T  +G    T V+   G
Sbjct: 120 NVLIPTEG--GDFNEFPVPEQF-KTLWNGQKLVTTVTEIAG 157
>pdb|1K4Z|A Chain A, C-Terminal Domain Of Cyclase Associated Protein Length = 159 Back     alignment and structure
>pdb|1KQ5|A Chain A, C-Terminal Domain Of Cyclase Associated Protein With Pro 505 Replaced By Ser (P505s) Length = 159 Back     alignment and structure
>pdb|2B0R|A Chain A, Crystal Structure Of Cyclase-Associated Protein From Cryptosporidium Parvum Length = 202 Back     alignment and structure
>pdb|1TJF|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Cap Indicates Variable Oligomerisation Length = 186 Back     alignment and structure
>pdb|1S0P|A Chain A, Structure Of The N-Terminal Domain Of The Adenylyl Cyclase- Associated Protein (Cap) From Dictyostelium Discoideum. Length = 176 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1k4z_A159 CAP, adenylyl cyclase-associated protein; right-ha 4e-72
1k8f_A157 CAP, adenylyl cyclase-associated protein; actin bi 2e-71
2b0r_A202 Possible adenyl cyclase-associated protein; struct 1e-66
1s0p_A176 CAP, adenylyl cyclase-associated protein; alpha he 7e-42
3bh7_B 352 Protein XRP2; protein-protein complex, GTPase acti 6e-11
2yuh_A179 Tubulin-specific chaperone C; microtubule, beta-tu 8e-04
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A Length = 159 Back     alignment and structure
 Score =  221 bits (565), Expect = 4e-72
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)

Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
           PP+ EL  G KW +EN       ++ D +  +S+++  C   ++QI+GKVN I++ +   
Sbjct: 2   PPRKELV-GNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETES 60

Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
             VV    ++  +++  N    Q   S P IS+D + G  +YLS++SL   I T+ S+ I
Sbjct: 61  CSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAI 120

Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389
           NV +P  G D D+ E  +P+Q  H++ DG F++    H+G
Sbjct: 121 NVNLP-IGEDDDYVEFPIPEQMKHSFADGKFKSAVFEHAG 159
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1 Length = 157 Back     alignment and structure
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum} Length = 202 Back     alignment and structure
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A Length = 176 Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Length = 352 Back     alignment and structure
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
1k8f_A157 CAP, adenylyl cyclase-associated protein; actin bi 100.0
1k4z_A159 CAP, adenylyl cyclase-associated protein; right-ha 100.0
2b0r_A202 Possible adenyl cyclase-associated protein; struct 100.0
1s0p_A176 CAP, adenylyl cyclase-associated protein; alpha he 100.0
2yuh_A179 Tubulin-specific chaperone C; microtubule, beta-tu 99.62
3bh7_B 352 Protein XRP2; protein-protein complex, GTPase acti 98.51
2b0r_A202 Possible adenyl cyclase-associated protein; struct 98.5
1k4z_A159 CAP, adenylyl cyclase-associated protein; right-ha 98.46
1k8f_A157 CAP, adenylyl cyclase-associated protein; actin bi 98.44
2yuh_A179 Tubulin-specific chaperone C; microtubule, beta-tu 97.07
3bh7_B 352 Protein XRP2; protein-protein complex, GTPase acti 96.48
2pbd_V43 VAsp, vasodilator-stimulated phosphoprotein; terna 84.59
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1 Back     alignment and structure
Probab=100.00  E-value=1e-67  Score=472.29  Aligned_cols=157  Identities=46%  Similarity=0.818  Sum_probs=154.5

Q ss_pred             CCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecce
Q 016407          230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGV  309 (390)
Q Consensus       230 pp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~  309 (390)
                      ||++||+ |+||+||||+++++|++++++|+|+||||+|+|++|+|+||+|||+||+|+|++|+||++||++||+||++|
T Consensus         1 pp~~eL~-g~KW~VEn~~~~~~~~i~~~~~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~   79 (157)
T 1k8f_A            1 PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDV   79 (157)
T ss_dssp             CCEEEEE-TTEEEEESCBSCCCEEECCCCTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEE
T ss_pred             CCceEEe-CCEEEEEeccCCcccEEEccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcE
Confidence            7999998 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeecccC
Q 016407          310 EAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG  389 (390)
Q Consensus       310 ~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~g  389 (390)
                      +|||+|.+|||+|||||||+||||++|+++||+|||||+|||+||+  |||||+|+||||||+|+|++|||+|+++||+|
T Consensus        80 ~vQv~g~vPtisIDktdg~~iYLSkesl~~ei~TsKsS~mNv~vp~--~d~D~~E~piPEQf~t~~~~gkl~t~~veh~g  157 (157)
T 1k8f_A           80 KVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT--EGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG  157 (157)
T ss_dssp             EEEESSCCSEEEEESCEEEEEECCTTCTTCEEEEESCEEEEEEEEE--TTTEEEEEECCCEEEEEECSSSEEEEEECCCC
T ss_pred             EEEEecccCEEEEEccCCEEEEEccccCCcEEEEEcccceEEeecC--CCCceeEccCchhEEEEEECCEEEEEEEEecC
Confidence            9999999999999999999999999999999999999999999994  47899999999999999999999999999998
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A Back     alignment and structure
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum} Back     alignment and structure
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A Back     alignment and structure
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Back     alignment and structure
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum} Back     alignment and structure
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A Back     alignment and structure
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1 Back     alignment and structure
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Back     alignment and structure
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1k8fa_157 b.80.5.1 (A:) C-terminal domain of adenylylcyclase 2e-77
d1k4za_157 b.80.5.1 (A:) C-terminal domain of adenylylcyclase 6e-77
d1s0pa_176 a.192.1.1 (A:) N-terminal domain of adenylylcyclas 4e-48
>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]} Length = 157 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  234 bits (598), Expect = 2e-77
 Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 3/160 (1%)

Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
           P  LEL+ G+KW VENQ    NLVI+D + KQ  Y++ C ++ LQI+GK+N+IT+D C K
Sbjct: 1   PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKK 59

Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
           +G+VF DVV   EI+N   V+ Q  G  PTIS++ T GC  YLS++SL   I +AKSSE+
Sbjct: 60  LGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEM 119

Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389
           NVL+P      D+ E  +P+QF   +      TT    +G
Sbjct: 120 NVLIPTE--GGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 157
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 157 Back     information, alignment and structure
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1k8fa_157 C-terminal domain of adenylylcyclase associated pr 100.0
d1k4za_157 C-terminal domain of adenylylcyclase associated pr 100.0
d1s0pa_176 N-terminal domain of adenylylcyclase associated pr 100.0
d1k4za_157 C-terminal domain of adenylylcyclase associated pr 98.55
d1k8fa_157 C-terminal domain of adenylylcyclase associated pr 98.51
d1z3xa187 GUN4-like protein Ycf53, N-terminal domain {Thermo 81.17
>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-68  Score=471.69  Aligned_cols=157  Identities=46%  Similarity=0.818  Sum_probs=154.8

Q ss_pred             CCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecce
Q 016407          230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGV  309 (390)
Q Consensus       230 pp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~  309 (390)
                      |||+||+ |+||+||||+++++|++++++|+|+||||+|+|++|+|+||+|||+||+|+|++|+||++||++||+||++|
T Consensus         1 Pp~~eL~-G~kW~VEn~~~~~~lvi~~~~~~qsV~I~~C~n~~i~IkgKvNsisid~C~k~~vv~dsvVs~vevvnc~~~   79 (157)
T d1k8fa_           1 PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDV   79 (157)
T ss_dssp             CCEEEEE-TTEEEEESCBSCCCEEECCCCTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEE
T ss_pred             CCeEeec-CCEEEEEeccCCCccEEEccccccEEEEEcccceEEEEcceEEEEEEeccceeEEEEcceEeEEEEEecCcE
Confidence            8999998 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeecccC
Q 016407          310 EAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG  389 (390)
Q Consensus       310 ~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~g  389 (390)
                      +|||+|.+|||+|||||||+||||++|+++||||||||+|||++|+  |||||+|+||||||+|+|++|||+|+++||+|
T Consensus        80 ~vQv~g~vPtIsIDktdg~~iYLskesl~teI~TskSSemNV~vp~--edgD~~E~piPEQf~t~~~~~klvT~~~e~~G  157 (157)
T d1k8fa_          80 KVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT--EGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG  157 (157)
T ss_dssp             EEEESSCCSEEEEESCEEEEEECCTTCTTCEEEEESCEEEEEEEEE--TTTEEEEEECCCEEEEEECSSSEEEEEECCCC
T ss_pred             EEEEeccCCEEEEEccCCEEEEEcccccCcEEEEeccceeeEecCC--CCCCeeEccCchHeEEEEECCEEEEEEeecCC
Confidence            9999999999999999999999999999999999999999999995  47999999999999999999999999999998
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure