Citrus Sinensis ID: 016414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Secondary Structure (PSIPRED)
ccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHcccccEEcccccccHHHHHHHHHHccccEEEEEEEcccccccEEEEccccccEEEEEEEEEEEcccccccccccccccEEEEccccccccHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcccccHcccccccccccccccHHHccccccHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEEEEEEcccccEEEEEccccEEEEEEEEccccccEEEEEcccccccccccccccccccccccccccEEEHHcccccEEEEHHHHcccccccccccEEEEEcccccccccEEcc
Coil and Loop (DISEMBL)
mgakrkksegeellnegekendknneNISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALElgeepparmtprtientrepdetvcrpdddelfagndadefssilkqgcapkilittcrfnsnrgpAFISELLsvipnshyykrgtYDLKKIIEYAKKKDFTSIIVVHTnrrepdalliiglpdgptahfKLSKLVLRKDiknhgnptghipeLVLNNFATRLGHRVGRLIqslfpqspefrgrrvvtfhnqrdfiffrhhrcvplefISCYMWTILCSYLTSIMKAFCYYECRYIFetkeskgsdangkkakdaksekTSQQKVITRLQECGPRFTLKLVSLQhgtfdtkggefewvhkpemdtsrrrffl
Flexible Loop (DISEMBL)
mgakrkksegeellnegekendknneniskkmkkeilpsmiknkekrsavhaklkhqkkvekrkklkardaaekralelgeepparmtprtientrepdetvcrPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLiiglpdgptAHFKLSKLVLRKDIKNhgnptghipeLVLNNFATRLGHRVGRLIQslfpqspefrgRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFEtkeskgsdangkkakdaksektsqqKVITRLQECGPRFTLKLVSLQHgtfdtkggefewvhkpemdtsrrrffl
Low Complexity Region (SEG)
MGAKRkksegeellnegekendknneniskkMKKEILPSMIKNKEKRSAVHAklkhqkkvekrkklkARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered region (IsUnstruct)
********************************************************************************************************************DEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFE**************************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH*************
Disordered Region (DISOPRED)
************************************************A***********************************************EPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEF***********YLTSIMKAFCYYEC******************************************************FDTKGGEFEWVHKPEMDT**RRFFL
Disordered Region (DISEMBL)
***********************NNENISKKMKKEILPSMIKNKE****************************KRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKE***********************VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Disordered Region (DISPRO)
**********************************EILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARD****************M*************T**RPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKE*********************QKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q5R631	349	Ribosome production facto	yes	no	0.751	0.839	0.437	5e-70
Q9H9Y2	349	Ribosome production facto	yes	no	0.794	0.888	0.422	1e-69
Q7TND5	349	Ribosome production facto	yes	no	0.751	0.839	0.429	4e-69
Q8AVP1	343	Ribosome production facto	N/A	no	0.751	0.854	0.429	9e-68
Q5RJS9	345	Ribosome production facto	yes	no	0.720	0.814	0.419	6e-65
Q6IQU6	330	Ribosome production facto	yes	no	0.751	0.887	0.406	3e-63
P54073	384	Brix domain-containing pr	yes	no	0.774	0.786	0.392	2e-60
Q9VKB4	394	Probable ribosome product	yes	no	0.735	0.728	0.401	5e-53
P38805	295	Ribosome production facto	yes	no	0.720	0.952	0.365	4e-52
O14180	306	Brix domain-containing pr	yes	no	0.756	0.964	0.374	2e-49

>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 155/354 (43%), Positives = 206/354 (58%), Gaps = 61/354 (17%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNKE+R  +  + K Q   ++++KL A+   +K    LG++ P +  P+TI+N R  
Sbjct: 55  SEIKNKERRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
            H                                RYIF +++  G               
Sbjct: 292 FH--------------------------------RYIFRSEKKVG--------------- 304

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 390
                    +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.
Pongo abelii (taxid: 9601)

>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/376 (42%), Positives = 212/376 (56%), Gaps = 66/376 (17%)

Query: 22  DKNNENISKKMKKEILP-----SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA 76
           D   EN  +  K    P     S IKNK++R  +  + K Q   ++++KL A+   +K  
Sbjct: 33  DGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKER 89

Query: 77  LELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTC 136
             LG++ P +  P+TI+N R  DET   P+D+E+      DEF+S   +  +PKILITT 
Sbjct: 90  EALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTS 149

Query: 137 RFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALL 196
                R      +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L+
Sbjct: 150 DRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLI 209

Query: 197 IIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQ 255
           +  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP 
Sbjct: 210 LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPH 269

Query: 256 SPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIF 315
           +P+F GR+V TFHNQRD+IFFR H                                RYIF
Sbjct: 270 NPQFIGRQVATFHNQRDYIFFRFH--------------------------------RYIF 297

Query: 316 ETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEW 375
            +++  G                        +QE GPRFTLKL SLQ GTFD+K GE+EW
Sbjct: 298 RSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEW 333

Query: 376 VHKP-EMDTSRRRFFL 390
           VHKP EMDTSRR+F L
Sbjct: 334 VHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2

 Score =  262 bits (669), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 152/354 (42%), Positives = 207/354 (58%), Gaps = 61/354 (17%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  + K Q   ++++KL A+   +K    LG++ P +  P+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
            H                                RYIF++++  G               
Sbjct: 292 FH--------------------------------RYIFKSEKKVG--------------- 304

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 390
                    +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349

May be required for ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1

 Score =  257 bits (657), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 152/354 (42%), Positives = 200/354 (56%), Gaps = 61/354 (17%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  KLK +K+ EK    K R   E+ AL  G++ P +  P+TIEN R  
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKR-KKEREAL--GDKAPPKPVPKTIENQRVY 105

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P D+E+      DEF+    +   PKILITT      R   F  +L S+IPNS 
Sbjct: 106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK+
Sbjct: 166 VYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKE 225

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           +K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFFR
Sbjct: 226 MKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFR 285

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
           +H                                RY+F++++  G               
Sbjct: 286 YH--------------------------------RYLFKSEKKVG--------------- 298

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 390
                    +QE GPRFTLKL SLQ GTFD+K GE+EWVHK  EMDTSRR+F L
Sbjct: 299 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343

May be required for ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2

 Score =  248 bits (633), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 194/341 (56%), Gaps = 60/341 (17%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R  +  + K Q++ EK    K     E+ AL  G++ P +  P+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEKLAAKKKL-KREREAL--GDKAPPKPVPKTIDNQRVY 111

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
            H                                RYIF++++  G               
Sbjct: 292 FH--------------------------------RYIFKSEKKVG--------------- 304

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 378
                    +QE GPRFTLKL SLQ GTFD+K GE+EWVHK
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336

May be required for ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/354 (40%), Positives = 200/354 (56%), Gaps = 61/354 (17%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S IKNK++R   H      K+ +++K+++ +   +K    L ++ P +  P+TIEN R  
Sbjct: 36  SEIKNKQRR---HTMFLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIY 92

Query: 99  DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
           DET   P+D+E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++
Sbjct: 93  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 152

Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
            Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK+
Sbjct: 153 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 212

Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           +K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFFR
Sbjct: 213 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 272

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
            H                                RYIF+ ++  G               
Sbjct: 273 FH--------------------------------RYIFKNEKKVG--------------- 285

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 390
                    +QE GPRFTLKL SLQ GTFD+K GE+EWVHK  EMD+SRR+F L
Sbjct: 286 ---------IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330

May be required for ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=4 SV=4

 Score =  233 bits (594), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 192/367 (52%), Gaps = 65/367 (17%)

Query: 34  KEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRAL---------ELGEEPP 84
           +E+L     +K   +      KH  K ++ K LK     +KRA          ELGE  P
Sbjct: 73  QELLEKYEASKATATKTKDDFKHLPKSQRGKALKRALRKDKRARQGERAQIRDELGESAP 132

Query: 85  ARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGP 144
            +  P+TIE+ RE D T+   +DDE+      DEF+    +  +PK++IT          
Sbjct: 133 QKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTF 192

Query: 145 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204
            F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GP
Sbjct: 193 KFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGP 252

Query: 205 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 264
           TA+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP  P+F GRRV
Sbjct: 253 TAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRV 312

Query: 265 VTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSD 324
           VTFHNQRD+IFFRHH                                RY F+ + SK + 
Sbjct: 313 VTFHNQRDYIFFRHH--------------------------------RYEFKKEGSKAA- 339

Query: 325 ANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDT 383
                                 L E GPRFTL+L  LQ GTFD K GEFEWV K  EM+T
Sbjct: 340 ----------------------LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMET 377

Query: 384 SRRRFFL 390
           SRRRFFL
Sbjct: 378 SRRRFFL 384

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1

 Score =  208 bits (530), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 144/359 (40%), Positives = 197/359 (54%), Gaps = 72/359 (20%)

Query: 39  SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
           S ++NKE+R A++ K+K +K  +K ++ +AR  A   A       P      TIE+ RE 
Sbjct: 101 SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPA------NPGH----TIESLREK 150

Query: 99  DET----VCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVI 154
           D+T    +   D++EL      D+FSS  ++   PK+LIT       +   F  EL  + 
Sbjct: 151 DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIF 210

Query: 155 PNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
           PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + 
Sbjct: 211 PNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVK 270

Query: 215 LRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF 273
           L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF   PEFRGRR VTFHNQRD+
Sbjct: 271 LTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDY 330

Query: 274 IFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDA 333
           IFFRHHR                            YE      TKE       GK+ K  
Sbjct: 331 IFFRHHR----------------------------YEF-----TKE-------GKRVK-- 348

Query: 334 KSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 390
                        L+E GPRFTLKL SLQ GTFD+K G++ W+  +K     SRRRFFL
Sbjct: 349 -------------LRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394

May be required for ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 182/356 (51%), Gaps = 75/356 (21%)

Query: 41  IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDE 100
           I NK KR  + A +KH+K  E+    + R   E+   EL E+       +TIENTR  DE
Sbjct: 9   ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68

Query: 101 TVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
           T+ +    D+D+L  +  ++++E          PKI +TT          F + L+ ++P
Sbjct: 69  TINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILP 119

Query: 156 NSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
           N  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GPT +FKLS  V
Sbjct: 120 NVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV 179

Query: 215 LRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFI 274
             K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+P+  GR+V+T HNQRD+I
Sbjct: 180 EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYI 239

Query: 275 FFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAK 334
           FFR H                                RY+F+  E  G            
Sbjct: 240 FFRRH--------------------------------RYVFKDNERVG------------ 255

Query: 335 SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
                       LQE GP+FTLKL  LQ G  +    E EW HKPEMD  +++F+L
Sbjct: 256 ------------LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295

Essential protein. Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 188/358 (52%), Gaps = 63/358 (17%)

Query: 41  IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA-----LELGEEPPARMTPRTIENT 95
           IKNK  R   + K  HQK  +K ++ K R   E++      L L E  PA     TIE+ 
Sbjct: 4   IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPA-----TIESK 58

Query: 96  REPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAFISELLSV 153
           R  DET+     D+EL A    DEFS+   ++   PK+L+TT +  S +   F SELL  
Sbjct: 59  RVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDC 118

Query: 154 IPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSK 212
            PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS 
Sbjct: 119 FPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSN 178

Query: 213 LVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRD 272
           L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+P+ +GR+VVT H QRD
Sbjct: 179 LQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRD 238

Query: 273 FIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKD 332
           F+FFR H                                RY F  K S   D  G     
Sbjct: 239 FLFFRRH--------------------------------RYAFREK-SNMPDGIG----- 260

Query: 333 AKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
                       T LQE GPRFT++L  +Q G +D K GE  +      ++ RR+F+L
Sbjct: 261 ------------TGLQELGPRFTMRLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
359488064	801	PREDICTED: uncharacterized protein LOC10	0.887	0.431	0.741	1e-159
302143564	346	unnamed protein product [Vitis vinifera]	0.879	0.991	0.740	1e-158
359480784	346	PREDICTED: ribosome production factor 1-	0.887	1.0	0.746	1e-158
296082657	319	unnamed protein product [Vitis vinifera]	0.817	1.0	0.789	1e-154
358346575	356	Ribosome production factor [Medicago tru	0.902	0.988	0.688	1e-151
224068234	361	predicted protein [Populus trichocarpa]	0.917	0.991	0.750	1e-150
363807176	354	uncharacterized protein LOC100785331 [Gl	0.823	0.906	0.776	1e-149
224130720	370	predicted protein [Populus trichocarpa]	0.825	0.870	0.783	1e-149
297810003	347	hypothetical protein ARALYDRAFT_912074 [	0.884	0.994	0.704	1e-149
356559438	354	PREDICTED: LOW QUALITY PROTEIN: ribosome	0.823	0.906	0.773	1e-146

>gi|359488064|ref|XP_003633697.1| PREDICTED: uncharacterized protein LOC100263155 [Vitis vinifera]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/390 (74%), Positives = 313/390 (80%), Gaps = 44/390 (11%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           MGAKRKK E            +   ++     KK+ILPSMIKNK+KRSAVHAKLKHQKK+
Sbjct: 456 MGAKRKKRE------------EVGGDDEVAGGKKQILPSMIKNKDKRSAVHAKLKHQKKI 503

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKRKK KAR+AAEKRALELGEEPP +  PRTIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 504 EKRKKAKAREAAEKRALELGEEPPVKAIPRTIENTREFDETVCKPDDEELFAGNDADEFS 563

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFT 180
           SIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK KDFT
Sbjct: 564 SILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIKDFT 623

Query: 181 SIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATR 240
           S+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF TR
Sbjct: 624 SLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNFTTR 683

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLT 300
           LGHR+GR+IQSLFPQ+P FRGRRVVTFHNQRDFIFFRHH                     
Sbjct: 684 LGHRIGRMIQSLFPQAPNFRGRRVVTFHNQRDFIFFRHH--------------------- 722

Query: 301 SIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVS 360
                      RYIFE+KESK  D  G K KDAK EK+SQ KV+ RLQECGPRFTLKL++
Sbjct: 723 -----------RYIFESKESKQGDTKGNKDKDAKGEKSSQGKVVARLQECGPRFTLKLIN 771

Query: 361 LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 772 LQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143564|emb|CBI22317.3| unnamed protein product [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/393 (74%), Positives = 315/393 (80%), Gaps = 50/393 (12%)

Query: 1   MGAKRKKSE---GEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQ 57
           MGAKRKK E   G++ +  G               KK+ILPSMIKNK+KRSAVHAKLKHQ
Sbjct: 1   MGAKRKKREEVGGDDEVAGG---------------KKQILPSMIKNKDKRSAVHAKLKHQ 45

Query: 58  KKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDAD 117
           KK+EKRKK KAR+AAEKRALELGEEPP +  PRTIENTRE DETVC+PDD+ELFAGNDAD
Sbjct: 46  KKIEKRKKAKAREAAEKRALELGEEPPVKAIPRTIENTREFDETVCKPDDEELFAGNDAD 105

Query: 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKK 177
           EFSSIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAK K
Sbjct: 106 EFSSILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKIK 165

Query: 178 DFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNF 237
           DFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL KD+KNHGNPT HIPELVLNNF
Sbjct: 166 DFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLHKDVKNHGNPTSHIPELVLNNF 225

Query: 238 ATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCS 297
            TRLGHR+GR+IQSLFPQ+P FRGRRVVTFHNQRDFIFFRHH                  
Sbjct: 226 TTRLGHRIGRMIQSLFPQAPNFRGRRVVTFHNQRDFIFFRHH------------------ 267

Query: 298 YLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 357
                         RYIFE+KESK  D  G K KDAK EK+SQ KV+ RLQECGPRFTLK
Sbjct: 268 --------------RYIFESKESKQGDTKGNKDKDAKGEKSSQGKVVARLQECGPRFTLK 313

Query: 358 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           L++LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 314 LINLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480784|ref|XP_002268541.2| PREDICTED: ribosome production factor 1-like [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/390 (74%), Positives = 316/390 (81%), Gaps = 44/390 (11%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           MGAKRKK+E            +   ++     KK+ILPSMIKNKEKRSAVHAKLKHQKK+
Sbjct: 1   MGAKRKKTE------------EVGGDDEVGGGKKQILPSMIKNKEKRSAVHAKLKHQKKI 48

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKRKK KAR+AAEKRALELGEEPPA+  P TIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 49  EKRKKAKAREAAEKRALELGEEPPAKKIPHTIENTREFDETVCKPDDEELFAGNDADEFS 108

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFT 180
           SIL +   PKILITTCRFNS RGPAFISELLSVIPN+HYYKRGTYDLKKI+EYAKKKDFT
Sbjct: 109 SILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKKKDFT 168

Query: 181 SIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATR 240
           S+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD+KNHGNPT HIPELVLNNF TR
Sbjct: 169 SLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDVKNHGNPTSHIPELVLNNFTTR 228

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLT 300
           LGHR+GR+IQSLFPQ+P F GRRVVTFHNQRDFIFFRHH                     
Sbjct: 229 LGHRIGRMIQSLFPQAPNFGGRRVVTFHNQRDFIFFRHH--------------------- 267

Query: 301 SIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVS 360
                      RYIFE+KESK  D+ G K KDAK EK+S+ KV+ RLQECGPRFTLKL+S
Sbjct: 268 -----------RYIFESKESKQGDSKGNKDKDAKGEKSSRGKVVARLQECGPRFTLKLIS 316

Query: 361 LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           LQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 317 LQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082657|emb|CBI21662.3| unnamed protein product [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/351 (78%), Positives = 297/351 (84%), Gaps = 32/351 (9%)

Query: 40  MIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPD 99
           MIKNKEKRSAVHAKLKHQKK+EKRKK KAR+AAEKRALELGEEPPA+  P TIENTRE D
Sbjct: 1   MIKNKEKRSAVHAKLKHQKKIEKRKKAKAREAAEKRALELGEEPPAKKIPHTIENTREFD 60

Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
           ETVC+PDD+ELFAGNDADEFSSIL +   PKILITTCRFNS RGPAFISELLSVIPN+HY
Sbjct: 61  ETVCKPDDEELFAGNDADEFSSILNRKSDPKILITTCRFNSTRGPAFISELLSVIPNAHY 120

Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
           YKRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD+
Sbjct: 121 YKRGTYDLKKIVEYAKKKDFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDV 180

Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
           KNHGNPT HIPELVLNNF TRLGHR+GR+IQSLFPQ+P F GRRVVTFHNQRDFIFFRHH
Sbjct: 181 KNHGNPTSHIPELVLNNFTTRLGHRIGRMIQSLFPQAPNFGGRRVVTFHNQRDFIFFRHH 240

Query: 280 RCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTS 339
                                           RYIFE+KESK  D+ G K KDAK EK+S
Sbjct: 241 --------------------------------RYIFESKESKQGDSKGNKDKDAKGEKSS 268

Query: 340 QQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           + KV+ RLQECGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 269 RGKVVARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346575|ref|XP_003637342.1| Ribosome production factor [Medicago truncatula] gi|355503277|gb|AES84480.1| Ribosome production factor [Medicago truncatula]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 303/392 (77%), Gaps = 40/392 (10%)

Query: 1   MGAKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKV 60
           +G KRK++      N+ + E++ +      + K+   PSMIKNKEKRS +HAKLKHQKK+
Sbjct: 3   IGGKRKRN------NDSDGEDNSSKRETRTETKEPFRPSMIKNKEKRSEIHAKLKHQKKL 56

Query: 61  EKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFS 120
           EKR K  ARDAA KRA+ELGEEPP +  P+TIENTRE DETVC+PDD+ELFAGNDADEFS
Sbjct: 57  EKRAKSNARDAAVKRAIELGEEPPEKKVPKTIENTREVDETVCKPDDEELFAGNDADEFS 116

Query: 121 SILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKK--IIEYAKKKD 178
           SILK+  +PKILITTCRFNS RGPA ISELL VIPN+HY+KRGTYDLKK  I+EYA KKD
Sbjct: 117 SILKRQQSPKILITTCRFNSTRGPALISELLQVIPNAHYFKRGTYDLKKVMIVEYANKKD 176

Query: 179 FTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFA 238
           FTS++VVHTNRREP+ALLIIGLP+GPTAHFKL+ LVLRKDIKNHG PT H PELVLNNF 
Sbjct: 177 FTSLVVVHTNRREPNALLIIGLPEGPTAHFKLTNLVLRKDIKNHGVPTSHQPELVLNNFT 236

Query: 239 TRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSY 298
           TRLGHRVGR+IQSLFPQ PEF+GRRVVTFHNQRDFIFFRHH                   
Sbjct: 237 TRLGHRVGRMIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHH------------------- 277

Query: 299 LTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 358
                        RYIFETKE K  ++ GK  +D KSEK    K I RLQECGPRFTLKL
Sbjct: 278 -------------RYIFETKEIKKIESKGKNDEDGKSEKVPDHKTIARLQECGPRFTLKL 324

Query: 359 VSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
            SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 325 KSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068234|ref|XP_002302686.1| predicted protein [Populus trichocarpa] gi|222844412|gb|EEE81959.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/393 (75%), Positives = 315/393 (80%), Gaps = 35/393 (8%)

Query: 1   MGAKRKKSEGEELLNEG---EKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQ 57
           MG KR+ SE E +   G   E +  +  + + K   +EILPSMIKNKEKRSAVHAKLKH+
Sbjct: 1   MGGKRRTSESEAMEEYGSDVELDRKEKKKKMEKGKTREILPSMIKNKEKRSAVHAKLKHE 60

Query: 58  KKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDAD 117
           KKVEKRKKLKARDA EKRALELGEEPP R  PRTIENTRE DETVC+PDD+ELFAGNDAD
Sbjct: 61  KKVEKRKKLKARDAEEKRALELGEEPPPRKIPRTIENTRENDETVCKPDDEELFAGNDAD 120

Query: 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKK 177
           EFSSILK+   PKILITT RFNS RGPAFISELL VIPN+HYYKRGTYDLKKI+EYAKK+
Sbjct: 121 EFSSILKRERTPKILITTSRFNSTRGPAFISELLQVIPNAHYYKRGTYDLKKIVEYAKKQ 180

Query: 178 DFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNF 237
           DFTS+IVVHTNRREPDALLIIGLPDGPTAHFKLS+LVLRKDIKNHGNPT H PELVL NF
Sbjct: 181 DFTSLIVVHTNRREPDALLIIGLPDGPTAHFKLSRLVLRKDIKNHGNPTSHEPELVLTNF 240

Query: 238 ATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCS 297
            TRLGHR GR+IQSLFPQ P FRGRRVVTFHNQRD+IFFRHH                  
Sbjct: 241 TTRLGHRAGRIIQSLFPQEPNFRGRRVVTFHNQRDYIFFRHH------------------ 282

Query: 298 YLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 357
                         RYIFETKESK SD+ GKK KD K EK SQQKVI RLQECGPRFTLK
Sbjct: 283 --------------RYIFETKESKQSDSKGKKGKDGKGEKISQQKVIARLQECGPRFTLK 328

Query: 358 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           L SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 329 LRSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807176|ref|NP_001242604.1| uncharacterized protein LOC100785331 [Glycine max] gi|255644450|gb|ACU22729.1| unknown [Glycine max]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/353 (77%), Positives = 293/353 (83%), Gaps = 32/353 (9%)

Query: 38  PSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTRE 97
           PSMIKNKEKRS +HAKLKHQKK+EKR K KARDAA K+ALELGEEPP +  PRTIENTRE
Sbjct: 34  PSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRE 93

Query: 98  PDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNS 157
            DETVC+PDD+ELFAGNDADEF  IL Q   PKILITTCRF+S RGPAFISELLSVIPN+
Sbjct: 94  LDETVCKPDDEELFAGNDADEFGPILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNA 153

Query: 158 HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
           HY+KRGTYDLKKI+EYAKKKDFTSIIVVHTNRREPDALLIIG+PDGPTAHFKLSKLVLRK
Sbjct: 154 HYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRK 213

Query: 218 DIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           DIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+GRRVVTFHNQRDFIFFR
Sbjct: 214 DIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFR 273

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
           HH                                RYIFETKE K +++ GKK KD +SE 
Sbjct: 274 HH--------------------------------RYIFETKEVKKAESKGKKDKDGESEN 301

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
             +QK I RLQECGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 302 VPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130720|ref|XP_002320911.1| predicted protein [Populus trichocarpa] gi|222861684|gb|EEE99226.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/355 (78%), Positives = 292/355 (82%), Gaps = 33/355 (9%)

Query: 36  ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT 95
           ILPSMIKNKEKRSAVHAKLK QKKVEKRKKLKARDA EKRALELGEEPP R  PRTIENT
Sbjct: 49  ILPSMIKNKEKRSAVHAKLKQQKKVEKRKKLKARDAEEKRALELGEEPPPRKIPRTIENT 108

Query: 96  REPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
           RE DETVC+PDD ELFAGNDADEFSS+LK+   PKILITT RFNS RGPAFISELL VIP
Sbjct: 109 REFDETVCKPDD-ELFAGNDADEFSSVLKRDRIPKILITTSRFNSTRGPAFISELLEVIP 167

Query: 156 NSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL 215
           N+HYYKRGTYDLKKI+EYAKK+DFTS+IVVHTNRREPD LLIIGLPDGPTAHFKLS+LVL
Sbjct: 168 NAHYYKRGTYDLKKIVEYAKKQDFTSLIVVHTNRREPDGLLIIGLPDGPTAHFKLSRLVL 227

Query: 216 RKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275
           RKDIK+HGNPT H PELVL NF T LGHR+GRLIQSLFPQ P FRGRRVVTFHNQRD+IF
Sbjct: 228 RKDIKSHGNPTSHEPELVLTNFTTCLGHRIGRLIQSLFPQEPNFRGRRVVTFHNQRDYIF 287

Query: 276 FRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKS 335
           FRHH                                RYIFETKESK SD+ GK  KD K 
Sbjct: 288 FRHH--------------------------------RYIFETKESKQSDSKGKNRKDGKG 315

Query: 336 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           EK +QQKVI RLQECGPRFTLKL SLQH TFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 316 EKNTQQKVIARLQECGPRFTLKLRSLQHETFDTKGGEYEWVHKPEMDTSRRRFFL 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810003|ref|XP_002872885.1| hypothetical protein ARALYDRAFT_912074 [Arabidopsis lyrata subsp. lyrata] gi|297318722|gb|EFH49144.1| hypothetical protein ARALYDRAFT_912074 [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/392 (70%), Positives = 302/392 (77%), Gaps = 47/392 (11%)

Query: 1   MGAKRKKSEG--EELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQK 58
           MG KRKK +G  EE+ +EG  ++  N      + +  ILPSMIKNK+KRS V+AK KH+K
Sbjct: 1   MGFKRKKGDGDGEEMESEGRGKSSFN----GTEKRSVILPSMIKNKDKRSKVYAKQKHEK 56

Query: 59  KVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADE 118
           KVEK+KK++ARDAAEKRALELGEEPP +M P+TIENTRE DETVCRPDD+ELFA  DADE
Sbjct: 57  KVEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTREADETVCRPDDEELFADIDADE 116

Query: 119 FSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKD 178
           F+ +L++   PKILITTCRFNS RGPAFISELLSVIPNSHY KRGTYDLKKI+EYA KKD
Sbjct: 117 FNPVLRREITPKILITTCRFNSTRGPAFISELLSVIPNSHYQKRGTYDLKKIVEYATKKD 176

Query: 179 FTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFA 238
           FTS+IVVHTNRREPDALLIIGLP GPTAHFKLS LVLRKDIKNHGNPT H PELVLNNF 
Sbjct: 177 FTSLIVVHTNRREPDALLIIGLPTGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFT 236

Query: 239 TRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSY 298
           TRLG+RVGR  QSLFP  P FRGRRVVTFHNQRDFIFFRHH                   
Sbjct: 237 TRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHH------------------- 277

Query: 299 LTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 358
                        RYIFETKESK SD    K KD       Q+ +  RLQECGPRFTLKL
Sbjct: 278 -------------RYIFETKESKQSD----KGKDG-----VQETIKPRLQECGPRFTLKL 315

Query: 359 VSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
           V+LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Sbjct: 316 VTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 347

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559438|ref|XP_003548006.1| PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 1-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/353 (77%), Positives = 293/353 (83%), Gaps = 32/353 (9%)

Query: 38  PSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTRE 97
           PSMIKNKEKRS +HAKLK QKK++KR K KARDAA KRAL+LGEEPP +  PRTIENTRE
Sbjct: 34  PSMIKNKEKRSELHAKLKQQKKLDKRAKAKARDAALKRALDLGEEPPEKKVPRTIENTRE 93

Query: 98  PDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNS 157
            DETVC+PDDDELFAGNDADEF SIL Q   PKILITTCRF+S RGPAFISELLSVIPN+
Sbjct: 94  LDETVCKPDDDELFAGNDADEFGSILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNA 153

Query: 158 HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
           HY+KRGTYDLKKI+EYAKKKDFTS+IVVHTNRREPDALLIIG+PDGPTAHFKLSKLVLRK
Sbjct: 154 HYFKRGTYDLKKIVEYAKKKDFTSVIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRK 213

Query: 218 DIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
           DIKNHGNPTGH PELVLNNF TRLGHRVGRLIQSLFPQ PEF+GRRVVTFHNQRDFIFFR
Sbjct: 214 DIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFR 273

Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
           HH                                RYIFETKE K +++ GKK K+ KSE 
Sbjct: 274 HH--------------------------------RYIFETKEVKKTESKGKKDKEGKSEN 301

Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
             +QK I RLQECGPRFTLKL+SLQHGTFDTKGGE+EWVHKPEMDTSRRRFFL
Sbjct: 302 VPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2116992	343	MEE49 "AT4G01560" [Arabidopsis	0.633	0.720	0.781	1e-128
UNIPROTKB|Q5R631	349	RPF1 "Ribosome production fact	0.615	0.687	0.467	5.3e-71
UNIPROTKB|A4FUG9	349	BXDC5 "Uncharacterized protein	0.615	0.687	0.463	6.8e-71
UNIPROTKB|Q9H9Y2	349	RPF1 "Ribosome production fact	0.615	0.687	0.463	1.1e-70
UNIPROTKB|I3LN44	339	RPF1 "Uncharacterized protein"	0.615	0.707	0.459	2.9e-70
UNIPROTKB|E2RLN4	349	RPF1 "Uncharacterized protein"	0.615	0.687	0.459	3.7e-70
MGI|MGI:1917535	349	Rpf1 "ribosome production fact	0.615	0.687	0.455	4.7e-70
UNIPROTKB|F1NRK2	347	RPF1 "Uncharacterized protein"	0.615	0.691	0.455	9.8e-68
UNIPROTKB|Q8AVP1	343	rpf1 "Ribosome production fact	0.610	0.693	0.450	1.1e-66
ZFIN|ZDB-GENE-040625-177	352	rpf1 "ribosome production fact	0.607	0.673	0.443	2e-65

TAIR|locus:2116992 MEE49 "AT4G01560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
 Identities = 193/247 (78%), Positives = 209/247 (84%)

Query:    36 ILPSMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENT 95
             ILPSMIKNK+KRS V+A               ARDAAEKRALELGEEPP +M P+TIENT
Sbjct:    34 ILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENT 93

Query:    96 REPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
             RE DETVCRPDD+ELFA  DADEF+ +L++  APK+L+TTCRFNS RGPA ISELLSVIP
Sbjct:    94 RESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIP 153

Query:   156 NSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVL 215
             NSHY KRGTYDLKKI+EYA KKDFTS+IVVHTNRREPDALLIIGLP+GPTAHFKLS LVL
Sbjct:   154 NSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVL 213

Query:   216 RKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275
             RKDIKNHGNPT H PELVLNNF TRLG+RVGR  QSLFP  P FRGRRVVTFHNQRDFIF
Sbjct:   214 RKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIF 273

Query:   276 FRHHRCV 282
             FRHHR +
Sbjct:   274 FRHHRYI 280

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB|Q5R631 RPF1 "Ribosome production factor 1" [Pongo abelii (taxid:9601)]

 Score = 555 (200.4 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 115/246 (46%), Positives = 155/246 (63%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNKE+R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKERR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRCV 282
             R HR +
Sbjct:   291 RFHRYI 296

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

UNIPROTKB|A4FUG9 BXDC5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 554 (200.1 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 114/246 (46%), Positives = 156/246 (63%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRCV 282
             R HR +
Sbjct:   291 RFHRYI 296

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9H9Y2 RPF1 "Ribosome production factor 1" [Homo sapiens (taxid:9606)]

 Score = 552 (199.4 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 114/246 (46%), Positives = 155/246 (63%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRCV 282
             R HR +
Sbjct:   291 RFHRYI 296

GO:0006364 "rRNA processing" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

UNIPROTKB|I3LN44 RPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 548 (198.0 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
 Identities = 113/246 (45%), Positives = 154/246 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    45 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 101

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +   PKILITT      R      +L +VIPNSH
Sbjct:   102 DETIVDPNDEEVAYDEATDEFASYFNRQTCPKILITTSDRPHGRTVRLCEQLSTVIPNSH 161

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   162 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRK 220

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT H PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   221 EIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 280

Query:   277 RHHRCV 282
             R HR +
Sbjct:   281 RFHRYI 286

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RLN4 RPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 547 (197.6 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 113/246 (45%), Positives = 154/246 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAIKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET+  P+D+E+      DEF+S   +  +PKILITT      R      +L +VIPNSH
Sbjct:   112 DETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRCV 282
             R HR +
Sbjct:   291 RFHRYI 296

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1917535 Rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 546 (197.3 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
 Identities = 112/246 (45%), Positives = 155/246 (63%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                A+   +K    LG++ P +  P+TI+N R  
Sbjct:    55 SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+S   +  +PKILITT      R      +L +VIP+SH
Sbjct:   112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK
Sbjct:   172 VYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRK 230

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFF
Sbjct:   231 EIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFF 290

Query:   277 RHHRCV 282
             R HR +
Sbjct:   291 RFHRYI 296

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019843 "rRNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NRK2 RPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
 Identities = 112/246 (45%), Positives = 150/246 (60%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +    K    LG++ P +  P+TIEN R  
Sbjct:    53 SEIKNKQRR---HFMFLRWKQQQRKEKLALKKKRRKEREALGDKAPPKAIPKTIENQRIY 109

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEF+    +   PKILITT      R   F  +L +VIPNSH
Sbjct:   110 DETTVDPNDEEVAFDIATDEFAPYFNRQTVPKILITTSDRPRGRTVRFCEQLSTVIPNSH 169

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LK+II     +DFT +IV++ +R+ P+ L++  LPDGPTAHF++S + LRK
Sbjct:   170 VYYRRGLA-LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGPTAHFRMSSVRLRK 228

Query:   218 DIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             +IK  G  PT H+PE++LNNF TRLGH +GR+  SLFP  P+F GR+V TFHNQRD+IFF
Sbjct:   229 EIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQVATFHNQRDYIFF 288

Query:   277 RHHRCV 282
             R HR +
Sbjct:   289 RFHRYI 294

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8AVP1 rpf1 "Ribosome production factor 1" [Xenopus laevis (taxid:8355)]

 Score = 523 (189.2 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 110/244 (45%), Positives = 148/244 (60%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R  +                  R   E+ AL  G++ P +  P+TIEN R  
Sbjct:    49 SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKK-EREAL--GDKAPPKPVPKTIENQRVY 105

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P D+E+      DEF+    +   PKILITT      R   F  +L S+IPNS 
Sbjct:   106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK
Sbjct:   166 VYYRRGLA-LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRK 224

Query:   218 DIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             ++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFF
Sbjct:   225 EMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFF 284

Query:   277 RHHR 280
             R+HR
Sbjct:   285 RYHR 288

GO:0003723 "RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

ZFIN|ZDB-GENE-040625-177 rpf1 "ribosome production factor 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 518 (187.4 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 109/246 (44%), Positives = 153/246 (62%)

Query:    39 SMIKNKEKRSAVHAXXXXXXXXXXXXXXXARDAAEKRALELGEEPPARMTPRTIENTREP 98
             S IKNK++R   H                 +   E++AL  G++ P +  P+TIEN R  
Sbjct:    61 SEIKNKQRR---HTMFLKLKEEKRKKRMELKKK-ERKAL--GDKAPPKEVPKTIENQRIY 114

Query:    99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
             DET   P+D+E+      DEFS+   +   PK+LITT      R   F  +L +VIP+++
Sbjct:   115 DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 174

Query:   159 -YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRK 217
              YY+RG   LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK
Sbjct:   175 VYYRRGLA-LKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRK 233

Query:   218 DIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFF 276
             ++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFF
Sbjct:   234 EMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFF 293

Query:   277 RHHRCV 282
             R HR +
Sbjct:   294 RFHRYI 299

GO:0005730 "nucleolus" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	3e-42
pfam04427	176	pfam04427, Brix, Brix domain	2e-37
COG2136	191	COG2136, IMP4, Predicted exosome subunit/U3 small	3e-31

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  145 bits (369), Expect = 3e-42
 Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 10/161 (6%)

Query: 132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVH--TNR 189
           LITT R  S R      +L  + P S    RG   L +++E+A +K  T ++VV   +++
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSK 60

Query: 190 REPDALLIIGLPDGPTAHFKLSKLVLRKDIKN---HGNPTGHIPELVLNNFATRLGHRVG 246
             P  L I  LP+GPT  FK+  + LRK++K        TG  P L+ NNF T LG  + 
Sbjct: 61  GRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIK 120

Query: 247 RLIQSLFPQSPEFR-----GRRVVTFHNQRDFIFFRHHRCV 282
            L Q LFP  PE +      RRVVTF NQ D+IFFRH+R  
Sbjct: 121 ELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIK 161

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  132 bits (335), Expect = 2e-37
 Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 133 ITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 192
           ITT R  S R      +L  + PN+    RG   LK ++E+A +K  TS++V     ++P
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKDLLEFAGEKGDTSLLVFGE-HKKP 59

Query: 193 DALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATR--LGHRVGRLI 249
             L I  LP+GPT  F++S + L KDIK  G    G  P LV N F         +  L+
Sbjct: 60  LNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKELL 119

Query: 250 QSLFPQ-----SPEFRGRRVVTFHNQRDFIFFRHHR 280
           Q LFP       P   G RV+TF NQRD IFFRH+R
Sbjct: 120 QDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYR 155

Length = 176

>gnl|CDD|225047 COG2136, IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

 Score =  117 bits (294), Expect = 3e-31
 Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
           PK+L+TT R  S R  +F  +L  V+PN+++ +RG   + ++ E A  +  T +++V   
Sbjct: 2   PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGER 61

Query: 189 RREPDALLIIGL-PDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGH-RV 245
           R  P  L    L P+G T  FKLS + LR++I   G     H PEL+ NNF T LG  +V
Sbjct: 62  RGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKV 121

Query: 246 GRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRCVPLEF 286
                 L    F  +P +    V T  N+ DF   R HR V  E 
Sbjct: 122 AEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRRVFEED 166

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	99.97
PRK03972	208	ribosomal biogenesis protein; Validated	99.96
PRK00933	165	ribosomal biogenesis protein; Validated	99.3
KOG3031	307	consensus Protein required for biogenesis of the r	98.65
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	96.5
PRK03972	208	ribosomal biogenesis protein; Validated	95.57

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=4.7e-90  Score=652.87  Aligned_cols=299  Identities=56%  Similarity=0.876  Sum_probs=290.6

Q ss_pred             CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhhccccCCCcCCCCchhhhCCCC
Q 016414           36 ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGND  115 (390)
Q Consensus        36 ~~~~~i~nk~~r~~~~~~~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~P~tie~~r~~d~~~~~~~d~e~~~~~~  115 (390)
                      ....+|+||.+|++.|.+.+++|.+++.+.|+++.+++.+.+|+|+.+|+++||+||||+|+||+|+++++|+|+++|++
T Consensus         4 ~~~~~~~n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~~R~yDeT~v~~~deEl~~d~~   83 (302)
T KOG2780|consen    4 GNDIKIKNKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIESTRVYDETIVEEEDEELQADLA   83 (302)
T ss_pred             cccccccccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhhhhhccccccCCCcHHHhhhhh
Confidence            45678999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 016414          116 ADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL  195 (390)
Q Consensus       116 ~DEf~~~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L  195 (390)
                      +|||+.||+.+..|||||||+.+|+.++..||.+|..|||||++..|+++.++.|+++|..++||++|||+|+++.|++|
T Consensus        84 ~deF~~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L  163 (302)
T KOG2780|consen   84 DDEFSPYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGL  163 (302)
T ss_pred             hhhhHHHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCceEEEEEeceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCEEE
Q 016414          196 LIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF  275 (390)
Q Consensus       196 ~I~~lP~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~I~  275 (390)
                      .|+|||+|||+||+++||.+.+||..+|++++|.|+||+|||+|++|+.|++||++|||+.|+|+|||||+||||+||||
T Consensus       164 ~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~If  243 (302)
T KOG2780|consen  164 KIIHLPNGPTAYFKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIF  243 (302)
T ss_pred             EEEecCCCCceEEEeecccchhhhhhcCCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceeccccee
Q 016414          276 FRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFT  355 (390)
Q Consensus       276 FRHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRft  355 (390)
                      ||||                                ||+|.+++.+                       |+|||||||||
T Consensus       244 FRhh--------------------------------RY~Fkee~~k-----------------------vglqElGPrfT  268 (302)
T KOG2780|consen  244 FRHH--------------------------------RYEFKEEEIK-----------------------VGLQELGPRFT  268 (302)
T ss_pred             EEEE--------------------------------EEeecccccc-----------------------cchhhcCCcee
Confidence            9999                                9999865432                       79999999999


Q ss_pred             eEEeeeecccCCCCCCceEEEeCCCCCccccccCC
Q 016414          356 LKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL  390 (390)
Q Consensus       356 LkL~kI~~G~fd~~~Ge~ew~~k~~~~~~r~~f~l  390 (390)
                      |+|+++|+|+||.+.||++|++++ |+++||+|||
T Consensus       269 LrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L  302 (302)
T KOG2780|consen  269 LRLRRLQKGTFDEKEGEFEWVHKK-METSRRKFFL  302 (302)
T ss_pred             eeehhhhhccccccceeeeeeecc-cccchhcccC
Confidence            999999999999999999999999 9999999998

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=8.3e-68  Score=496.24  Aligned_cols=279  Identities=36%  Similarity=0.604  Sum_probs=240.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhhc--cccCCCcCCCCchhhhCCCCchhhhh
Q 016414           44 KEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT--REPDETVCRPDDDELFAGNDADEFSS  121 (390)
Q Consensus        44 k~~r~~~~~~~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~P~tie~~--r~~d~~~~~~~d~e~~~~~~~DEf~~  121 (390)
                      ++||+++|+|....+.+...+    +++..+++++.+     +.+|+.|...  --.|+-..++...|...-..+|||+ 
T Consensus         7 R~RREylyrK~~E~~~k~~~e----kk~~lr~ALe~n-----k~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~-   76 (290)
T KOG2781|consen    7 RERREYLYRKALEEQDKSLQE----KKRRLREALEEN-----KKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYR-   76 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC-----CCCChHHHHhHHHhhhhhhccccccccccccccHHHH-
Confidence            799999999997766554433    233556778876     8899988764  2223322211111111123468996 


Q ss_pred             hhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCC
Q 016414          122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP  201 (390)
Q Consensus       122 ~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP  201 (390)
                       ++|..+|||||||||+||+++.+|+++|+.+|||+..++||++.+.++++.|..+|+|++|||||++|.|.+|.|||||
T Consensus        77 -~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlP  155 (290)
T KOG2781|consen   77 -WAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLP  155 (290)
T ss_pred             -hccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecC
Confidence             4899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEeceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCEEEEEeecC
Q 016414          202 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRC  281 (390)
Q Consensus       202 ~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~I~FRHy~i  281 (390)
                      .|||++|+|.||.+++||++.|.++..+|+||||||+|.+|++++.+|..||| .|+..++|||||.|++|+|.||||  
T Consensus       156 fGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP-~pk~ds~Rvvtf~N~~DyIsFRhh--  232 (290)
T KOG2781|consen  156 FGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFP-VPKDDSKRVVTFANRNDYISFRHH--  232 (290)
T ss_pred             CCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCC-CCcCCcccEEEEecCCceEEEEEE--
Confidence            99999999999999999999999999999999999999999999999999999 588899999999999999999999  


Q ss_pred             ccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceeeEEeee
Q 016414          282 VPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL  361 (390)
Q Consensus       282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftLkL~kI  361 (390)
                                                    .|.-.+.  +.                      |.|.|+||||.|+|+.|
T Consensus       233 ------------------------------vy~~~~~--k~----------------------vel~evGPRfelklyeI  258 (290)
T KOG2781|consen  233 ------------------------------VYKKTDG--KE----------------------VELTEVGPRFELKLYEI  258 (290)
T ss_pred             ------------------------------EEecCCC--ce----------------------EEEeeccccceeeeeee
Confidence                                          6653221  11                      68999999999999999


Q ss_pred             ecccCCCCCCceEEEeCCCCCccccccCC
Q 016414          362 QHGTFDTKGGEFEWVHKPEMDTSRRRFFL  390 (390)
Q Consensus       362 ~~G~fd~~~Ge~ew~~k~~~~~~r~~f~l  390 (390)
                      ..||++.+.+++||+++|||+|+|+|-||
T Consensus       259 rlGTlE~~~ad~EW~~rpY~nTa~kR~~l  287 (290)
T KOG2781|consen  259 RLGTLEIKDADVEWVLRPYMNTARKRDFL  287 (290)
T ss_pred             eecceeccccceeEEecchhcchhhhhhh
Confidence            99999999999999999999999988665

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.8e-43  Score=340.57  Aligned_cols=239  Identities=21%  Similarity=0.281  Sum_probs=190.9

Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHhcC-Ccch--hcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCC
Q 016414          127 CAPKILITTCRFNSNRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG  203 (390)
Q Consensus       127 ~~PKiLITTSr~pS~r~r~F~kdL~~i~-PnS~--~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~G  203 (390)
                      ..|.+++.++.-....+.+|..||+.|+ ||+.  ...|+.++|||++..|..+|+||++|++....+ .+|.|+++|.|
T Consensus        24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~n-lslki~R~PqG  102 (405)
T KOG2963|consen   24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETN-LSLKIARTPQG  102 (405)
T ss_pred             cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCc-eeEEEEecCCC
Confidence            4689999999999999999999999999 9976  456789999999999999999999999999884 79999999999


Q ss_pred             ceEEEEEeceeehhhhccCC---CC----CCCCCeEEecCCCc---chhHHHHHHHHhhCCCCCC-----CCCCeEEEEE
Q 016414          204 PTAHFKLSKLVLRKDIKNHG---NP----TGHIPELVLNNFAT---RLGHRVGRLIQSLFPQSPE-----FRGRRVVTFH  268 (390)
Q Consensus       204 PT~~FkI~nv~l~kdI~~~g---~~----~~~~P~LIlnnF~t---~lg~~i~~mfq~LFP~~p~-----~~~RRVVtF~  268 (390)
                      ||++|+|+.|+|.+|+....   .+    +.|+|+||||||++   .+-++|++|||+|||+|+-     .+++||++|+
T Consensus       103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin  182 (405)
T KOG2963|consen  103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN  182 (405)
T ss_pred             CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence            99999999999999998754   22    47999999999995   4677999999999999873     4799999999


Q ss_pred             e--cCCEEEEEeecCccchhhhhhhhhhhhhhhhhhhhhhh-----c------cccceeeec----ccCCCCCcCCcccc
Q 016414          269 N--QRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFC-----Y------YECRYIFET----KESKGSDANGKKAK  331 (390)
Q Consensus       269 n--q~d~I~FRHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~-----~------~~~rY~f~~----~~~~~~~~~~~~v~  331 (390)
                      +  +++.|.||||+|.       .+|+|+++++++|+++-.     .      +.|.|+...    ++++.+++..-.|.
T Consensus       183 yn~dt~eIdmRHysI~-------vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~  255 (405)
T KOG2963|consen  183 YNRDTGEIDMRHYSIR-------VVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIV  255 (405)
T ss_pred             cCCCCCeeeeeeeEEE-------EEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEe
Confidence            6  5679999999884       589999999999999743     1      113332211    12222111111121


Q ss_pred             ----------ccc-----hhhhhhhhhcccceecccceeeEEeeeecccCCCCCCceEEEe
Q 016414          332 ----------DAK-----SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH  377 (390)
Q Consensus       332 ----------~a~-----~~~~~~~~~~v~LqEIGPRftLkL~kI~~G~fd~~~Ge~ew~~  377 (390)
                                +++     |... -.+++|+|+||||||||+|+||++|+|   +|+|.|..
T Consensus       256 ~~~~~~~eveL~q~~~s~g~~~-~qksaikL~EIGPRlTlqLvKIeEGi~---~GkVlyH~  312 (405)
T KOG2963|consen  256 DNQDVKEEVELPQPKASRGNQP-PQKSAIKLTEIGPRLTLQLVKIEEGIC---EGKVLYHE  312 (405)
T ss_pred             ccccchhhhhccccccccCCCc-ccccceeeEeecccceEEEEEeecccc---ccceEEee
Confidence                      221     2211 224559999999999999999999999   79998864

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=2.7e-40  Score=302.36  Aligned_cols=147  Identities=41%  Similarity=0.633  Sum_probs=80.9

Q ss_pred             EEeCCCCCCcHHHHHHHHHhcC-Ccchhcccccc-cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEE
Q 016414          133 ITTCRFNSNRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (390)
Q Consensus       133 ITTSr~pS~r~r~F~kdL~~i~-PnS~~~~R~k~-~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (390)
                      ||||++||.++++|++||+.+| |||.+++|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|+|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I   80 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI   80 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence            7999999999999999999999 99999999988 999999999999999999999999999999999999999999999


Q ss_pred             eceeehhhhccCCC-CCCCCCeEEecCCCcch---hHHHHHHHHhhCCCCC-----CCCCCeEEEEEecCCE-EEEEee
Q 016414          211 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQSP-----EFRGRRVVTFHNQRDF-IFFRHH  279 (390)
Q Consensus       211 ~nv~l~kdI~~~g~-~~~~~P~LIlnnF~t~l---g~~i~~mfq~LFP~~p-----~~~~RRVVtF~nq~d~-I~FRHy  279 (390)
                      .||++++|+++... +.+++|+|||+||.++.   +++++.||++|||...     ...++||++|++++|. ||||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y  159 (191)
T PF04427_consen   81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY  159 (191)
T ss_dssp             EEEE-HHHHT-------S---EEEEE-----------------------------------------------------
T ss_pred             EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999987653 45889999999998765   9999999999999852     3579999999999998 999999

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.6e-36  Score=273.23  Aligned_cols=148  Identities=45%  Similarity=0.705  Sum_probs=136.9

Q ss_pred             EEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEec--CCCCceEEEeeCCCCceEEEE
Q 016414          132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK  209 (390)
Q Consensus       132 LITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~--r~~p~~L~I~~lP~GPT~~Fk  209 (390)
                      |||||++||.++++|++||+.++|++.++.|+++.+.+++++|...+.+++|++.|.  +|+|++|||+++|+|||++|.
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~   80 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK   80 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence            699999999999999999999999999999999999999999999977777777777  899999999999999999999


Q ss_pred             Eeceeehhhhcc--CCC-CCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCC-----CCCeEEEEEecCCEEEEEee
Q 016414          210 LSKLVLRKDIKN--HGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHH  279 (390)
Q Consensus       210 I~nv~l~kdI~~--~g~-~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~-----~~RRVVtF~nq~d~I~FRHy  279 (390)
                      |.+|.+.+|+.+  .++ ...++|+||||||.+.+|++++.||+.|||..+..     .++|||+|++++|.|+||||
T Consensus        81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y  158 (180)
T smart00879       81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHY  158 (180)
T ss_pred             EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEE
Confidence            999999999987  334 35789999999999999999999999999987654     57999999999999999999

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=100.00  E-value=5.6e-36  Score=277.03  Aligned_cols=181  Identities=37%  Similarity=0.579  Sum_probs=172.6

Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeC-CCCceEE
Q 016414          129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTAH  207 (390)
Q Consensus       129 PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~l-P~GPT~~  207 (390)
                      ||+||||||+||.++++|+++|..+|||+.+..||++++.++.+.|...|+++++||+|++|+|..|.++|+ |+||+++
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~   81 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS   81 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEEeceeehhhhccCCC-CCCCCCeEEecCCCcchh-HHHHHHHHhh----CCCCCCCCCCeEEEEEecCCEEEEEeecC
Q 016414          208 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRC  281 (390)
Q Consensus       208 FkI~nv~l~kdI~~~g~-~~~~~P~LIlnnF~t~lg-~~i~~mfq~L----FP~~p~~~~RRVVtF~nq~d~I~FRHy~i  281 (390)
                      |+|+|+++.+++.+++. ...|.|++|+|||.+.+| +.++++|+.+    |++.+.....+|++++++.++++||+|  
T Consensus        82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~--  159 (191)
T COG2136          82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRH--  159 (191)
T ss_pred             EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEee--
Confidence            99999999999999987 678999999999999999 8999999999    999888889999999999999999999  


Q ss_pred             ccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceeeEEeee
Q 016414          282 VPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL  361 (390)
Q Consensus       282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftLkL~kI  361 (390)
                                                    .|++.. +                        .++++|+||||+|+|..+
T Consensus       160 ------------------------------~~~~~~-~------------------------~~~~~~vgp~~~~r~~~~  184 (191)
T COG2136         160 ------------------------------RRVFEE-D------------------------GIGLEEVGPRLTLRLWRM  184 (191)
T ss_pred             ------------------------------eeEeee-e------------------------eeeEEEeCceeeeehhhh
Confidence                                          898864 1                        169999999999999999


Q ss_pred             ecccC
Q 016414          362 QHGTF  366 (390)
Q Consensus       362 ~~G~f  366 (390)
                      +.|+.
T Consensus       185 ~~g~~  189 (191)
T COG2136         185 EDGRG  189 (191)
T ss_pred             hhccc
Confidence            99965

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-34  Score=271.04  Aligned_cols=195  Identities=24%  Similarity=0.372  Sum_probs=174.7

Q ss_pred             CCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCce
Q 016414          128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT  205 (390)
Q Consensus       128 ~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R--~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT  205 (390)
                      ..+|||++||+.+-++|+||+||..++||+....+  .+..+..|.++|...+|+.+++|..++....|||++.+|+|||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS  128 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS  128 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence            77999999999999999999999999999987765  4778999999999999999999999999999999999999999


Q ss_pred             EEEEEeceeehhhhccCCCCC-CCCCeEEec-CCC-cchhHHHHHHHHhhCCCCCC------CCCCeEEEEEecCCEEEE
Q 016414          206 AHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFA-TRLGHRVGRLIQSLFPQSPE------FRGRRVVTFHNQRDFIFF  276 (390)
Q Consensus       206 ~~FkI~nv~l~kdI~~~g~~~-~~~P~LIln-nF~-t~lg~~i~~mfq~LFP~~p~------~~~RRVVtF~nq~d~I~F  276 (390)
                      +.|.|+|++++.|++..|||. +++|+|.|+ +|. .|+-+++..||.+.|.. |.      ....+|++|+.-+|.|||
T Consensus       129 vkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~D~~IWf  207 (299)
T KOG2971|consen  129 VKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSILDGKIWF  207 (299)
T ss_pred             eEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEecCeEEE
Confidence            999999999999999999995 689999998 798 47888999999999975 42      135799999999999999


Q ss_pred             EeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceee
Q 016414          277 RHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL  356 (390)
Q Consensus       277 RHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftL  356 (390)
                      |.|+|.                                  ..+.                        +.|+||||||+|
T Consensus       208 RnyqI~----------------------------------~~ed------------------------~~L~EiGPRfvl  229 (299)
T KOG2971|consen  208 RNYQIS----------------------------------EEED------------------------KTLIEIGPRFVL  229 (299)
T ss_pred             EEeEec----------------------------------cccC------------------------cceeeeccHHHH
Confidence            999652                                  1111                        489999999999


Q ss_pred             EEeeeecccCCCCCCceEEEeCCCCCcc
Q 016414          357 KLVSLQHGTFDTKGGEFEWVHKPEMDTS  384 (390)
Q Consensus       357 kL~kI~~G~fd~~~Ge~ew~~k~~~~~~  384 (390)
                      .+++|.+|.|   +|..+|.+..|...+
T Consensus       230 ~~ikif~gsF---gG~~lYenp~yvspn  254 (299)
T KOG2971|consen  230 NVIKIFEGSF---GGPTLYENPKYVSPN  254 (299)
T ss_pred             hHHHHHhccC---CCceeecCccccCHH
Confidence            9999999999   799999998775544

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.3e-30  Score=241.15  Aligned_cols=200  Identities=22%  Similarity=0.338  Sum_probs=174.5

Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccc--cccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCc
Q 016414          127 CAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRG--TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP  204 (390)
Q Consensus       127 ~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~--k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GP  204 (390)
                      .++++||.+||+.+-+.|+|++||..++|+|....+.  +..+.++.++|...+|+++++|..++....+||+++.|+||
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp  108 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP  108 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence            3789999999999999999999999999999877764  77899999999999999999999999999999999999999


Q ss_pred             eEEEEEeceeehhhhccCCCCC-CCCCeEEecC-CC-cchhHHHHHHHHhhCCCCCC-----CCCCeEEEEEecCCEEEE
Q 016414          205 TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNN-FA-TRLGHRVGRLIQSLFPQSPE-----FRGRRVVTFHNQRDFIFF  276 (390)
Q Consensus       205 T~~FkI~nv~l~kdI~~~g~~~-~~~P~LIlnn-F~-t~lg~~i~~mfq~LFP~~p~-----~~~RRVVtF~nq~d~I~F  276 (390)
                      |+.|+|+|++++.|+...||+. +++|.|.|+- |. .||-+.+..++++.|...|.     ....+|++|..-+|.|||
T Consensus       109 tvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWv  188 (283)
T COG5154         109 TVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWV  188 (283)
T ss_pred             eEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEE
Confidence            9999999999999999999985 6899999985 97 47888999999999976332     246899999999999999


Q ss_pred             EeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceee
Q 016414          277 RHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL  356 (390)
Q Consensus       277 RHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftL  356 (390)
                      |.|.|..                            .|  ++++                     ++  |+|.||||||.|
T Consensus       189 R~YeI~r----------------------------e~--ed~~---------------------~d--v~L~EIGPRfVm  215 (283)
T COG5154         189 RCYEIGR----------------------------EN--EDKS---------------------KD--VKLEEIGPRFVM  215 (283)
T ss_pred             EEEeecc----------------------------cc--cccc---------------------cc--ceeeeeccHHHH
Confidence            9995521                            11  1111                     01  799999999999


Q ss_pred             EEeeeecccCCCCCCceEEEeCCCCC
Q 016414          357 KLVSLQHGTFDTKGGEFEWVHKPEMD  382 (390)
Q Consensus       357 kL~kI~~G~fd~~~Ge~ew~~k~~~~  382 (390)
                      ..++|-+|.|   +|...|.+..+..
T Consensus       216 tvi~iLEgsF---gGp~iYkn~~~vs  238 (283)
T COG5154         216 TVIKILEGSF---GGPAIYKNETFVS  238 (283)
T ss_pred             HHHHHHHhcc---CCceeeecccccc
Confidence            9999999999   7999998886643

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.96  E-value=9.1e-30  Score=237.51  Aligned_cols=125  Identities=20%  Similarity=0.343  Sum_probs=117.8

Q ss_pred             EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCC---CceEE
Q 016414          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH  207 (390)
Q Consensus       131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~---GPT~~  207 (390)
                      ||||||++||+++++|++||..+||||.+++||+++|++|++.|..+|||+||||+|++|+|++|.|+|||.   |||++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~   81 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY   81 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999985   55999


Q ss_pred             EEEeceeehhhh--ccCCCCCCCCCeEEecCCCcchhH-HHHHHHHhhCCC
Q 016414          208 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ  255 (390)
Q Consensus       208 FkI~nv~l~kdI--~~~g~~~~~~P~LIlnnF~t~lg~-~i~~mfq~LFP~  255 (390)
                      |+|+||.+.+||  ++++.++.|.|+||.+||.+.+|+ ..|..+++.+.-
T Consensus        82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi  132 (208)
T PRK03972         82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG  132 (208)
T ss_pred             EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence            999999999999  568888999999999999999987 677788887765

>PRK00933 ribosomal biogenesis protein; Validated

Probab=99.30  E-value=2.2e-11  Score=111.08  Aligned_cols=112  Identities=21%  Similarity=0.422  Sum_probs=86.0

Q ss_pred             EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEE
Q 016414          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (390)
Q Consensus       131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (390)
                      ++||||++||.++++|+++|...+ |+.|++|++.++++|++.|..   .+++||+|++++|++|.|+.+-..+.+.+.|
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~   76 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL   76 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence            489999999999999999999999 999999999999999987664   4999999999999999999998788877765


Q ss_pred             eceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHh
Q 016414          211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQS  251 (390)
Q Consensus       211 ~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~  251 (390)
                       ++.+..++.+. ......|  +.+++... +.-++.+|..
T Consensus        77 -~v~~~~~~~~~-~~~~~~p--~~~~~~~~-~~~~~e~f~~  112 (165)
T PRK00933         77 -SVKLQREISGP-VFKNRRP--IKSAFDVG-GDELAELFDY  112 (165)
T ss_pred             -EeeeecccCcc-eeecCCC--cccchhhH-HHHHHHHHHH
Confidence             46776666421 1223334  33333322 4455555554

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.2e-07  Score=92.14  Aligned_cols=141  Identities=16%  Similarity=0.217  Sum_probs=106.0

Q ss_pred             CcHHHHHHHHHhc-CCcchhccccccc-----HHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCce---EEEEEe
Q 016414          141 NRGPAFISELLSV-IPNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT---AHFKLS  211 (390)
Q Consensus       141 ~r~r~F~kdL~~i-~PnS~~~~R~k~~-----Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT---~~FkI~  211 (390)
                      ..+..-|.||-.+ .|.+..+.|++..     -.-+..+...++|+-+++-+-+++.|++|+|.+.=++--   +-+.|.
T Consensus        40 ~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~  119 (307)
T KOG3031|consen   40 KTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIE  119 (307)
T ss_pred             hHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhh
Confidence            4556667777666 4888777776321     234566777888888888888899999999987765533   668899


Q ss_pred             ceeehhhhccCCCCCCCCCeEEecCCC---cchhHHHHHHHHhhCCCCCC----CC-CCeEEEEEecCCE-EEEEeecC
Q 016414          212 KLVLRKDIKNHGNPTGHIPELVLNNFA---TRLGHRVGRLIQSLFPQSPE----FR-GRRVVTFHNQRDF-IFFRHHRC  281 (390)
Q Consensus       212 nv~l~kdI~~~g~~~~~~P~LIlnnF~---t~lg~~i~~mfq~LFP~~p~----~~-~RRVVtF~nq~d~-I~FRHy~i  281 (390)
                      ||...+|....+-..+..|.|+|+|+.   ++.-+++..+|--.|--.+-    .. -++|+.|...++. |+||||.+
T Consensus       120 ~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~l  198 (307)
T KOG3031|consen  120 NYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRL  198 (307)
T ss_pred             hhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeee
Confidence            999999998766556789999999853   55567899999999876332    22 4799999987775 99999943

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.004  Score=60.17  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             HHHHhCCCceEEEEEecCCCCceEEEeeCCCC---ceEEEEEeceeehhhhccCCCCCCCCCeEEecC--CC-cchhHHH
Q 016414          172 EYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---PTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN--FA-TRLGHRV  245 (390)
Q Consensus       172 ~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~G---PT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnn--F~-t~lg~~i  245 (390)
                      -+...+++.-.+++...++.+.+|+|.+.=+=   -.+-|.|.+|....|....+......|.++|.|  |+ .|.-++|
T Consensus        77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~i  156 (316)
T COG5106          77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRI  156 (316)
T ss_pred             HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHH
Confidence            34456667777778788888889988664321   124567888888888877776667899999985  77 4667789


Q ss_pred             HHHHHhhCCCCCC----C-CCCeEEEEEecC---C-----EEEEEee
Q 016414          246 GRLIQSLFPQSPE----F-RGRRVVTFHNQR---D-----FIFFRHH  279 (390)
Q Consensus       246 ~~mfq~LFP~~p~----~-~~RRVVtF~nq~---d-----~I~FRHy  279 (390)
                      ..+|-..|--.+-    . .-..|+.-..+.   |     .+.||-|
T Consensus       157 ksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVy  203 (316)
T COG5106         157 KSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVY  203 (316)
T ss_pred             HHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeee
Confidence            9999999886542    1 123566555332   2     2468888

>PRK03972 ribosomal biogenesis protein; Validated

Probab=95.57  E-value=0.066  Score=50.98  Aligned_cols=76  Identities=24%  Similarity=0.296  Sum_probs=58.2

Q ss_pred             EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeC------CCCc
Q 016414          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------PDGP  204 (390)
Q Consensus       131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~l------P~GP  204 (390)
                      .+|||+.++...+...++.+...+ +..|++|++.++.+|.   ...+..+++||.-+-.. ..+.++++      |-||
T Consensus       107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~-~~~~~~~~~~~~~~~~~~  181 (208)
T PRK03972        107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRG-MAVNFYRLDVTKERPVGP  181 (208)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCc-eEEEEEEeccccccccCC
Confidence            589999999998888899988776 7888999999999876   44556788888665332 24455553      7799


Q ss_pred             eEEEEEe
Q 016414          205 TAHFKLS  211 (390)
Q Consensus       205 T~~FkI~  211 (390)
                      .+++++-
T Consensus       182 ~~~~~~~  188 (208)
T PRK03972        182 LIFVKIW  188 (208)
T ss_pred             cEEEEEE
Confidence            9988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	5e-64
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	9e-10
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2 Length = 217

 Score =  203 bits (517), Expect = 5e-64
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 106 DDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTY 165
               + AG+               +IL+TT R  S R  +F+ +L + IP +  + RG Y
Sbjct: 11  SSGLVPAGSHMLGGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHY 70

Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP-----TAHFKLSKLVLRKDIK 220
            ++++   A  +    I+VV   R  P  ++ +   +GP        F +  + L ++ +
Sbjct: 71  SMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRERR 129

Query: 221 NHGNPTGHIPELVL-----NNFATRLGHRVGRLIQSLFPQSPE--FRGRRVVTFHNQRDF 273
             G P+    E+++     +  A            +         +    + +   +   
Sbjct: 130 -WGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVA 188

Query: 274 IFFRHHR 280
           + FR+  
Sbjct: 189 VTFRYGG 195

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2 Length = 156

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 15/149 (10%)

Query: 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 190
           +L+TT R  S R  +F   L  ++    Y  RG   L+ ++  A+      + VV     
Sbjct: 2   MLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHG 56

Query: 191 EPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQ 250
            P  +  +    G    + L                    + V  +        +  L+ 
Sbjct: 57  NPARITFL-DERGGERGYILFNPSFEMKK------PELADKAVRVSSCPPGSEGLCNLMG 109

Query: 251 SLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
               +S     R   +     ++ +    
Sbjct: 110 LEVDESS---SRDAWSIRTDEEYAWVMEL 135

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 19/49 (38%)

Query: 45 EKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIE 93
          EK++         KK++   KL A D+A           PA     T+E
Sbjct: 18 EKQAL--------KKLQASLKLYADDSA-----------PALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	100.0
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.86

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=100.00  E-value=2.3e-35  Score=276.76  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=126.9

Q ss_pred             hhhCCCCchhhhhhhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEec
Q 016414          109 ELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN  188 (390)
Q Consensus       109 e~~~~~~~DEf~~~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~  188 (390)
                      +.+.++..|+|.   +|...||||||||++||.++++|++||..+|||+.|++|++++|++|+++|..+|||++|||+|+
T Consensus        17 ~~~~~~g~~~~~---~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~   93 (217)
T 2cxh_A           17 AGSHMLGGKGRP---SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGER   93 (217)
T ss_dssp             -------------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccccCcccc---cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEec
Confidence            334455568887   47889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeeCCCC---c-eEEEEEeceeehhhhccCCCC-CCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCC
Q 016414          189 RREPDALLIIGLPDG---P-TAHFKLSKLVLRKDIKNHGNP-TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR  260 (390)
Q Consensus       189 r~~p~~L~I~~lP~G---P-T~~FkI~nv~l~kdI~~~g~~-~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~  260 (390)
                      +++|++|||+|+|.|   | |++|+|+|+++++||+++|++ +.|+|+|+ |||++++|+++++||++|||. |.++
T Consensus        94 rg~p~~L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~-P~~~  168 (217)
T 2cxh_A           94 RGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHA-RLKP  168 (217)
T ss_dssp             TTEEEEEEEEECCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCC-BSSC
T ss_pred             CCCCcEEEEEECCCCCCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-eeecCchHHHHHHHHHHHcCC-CCCC
Confidence            999999999999999   9 999999999999999999976 68999999 999999999999999999998 7653

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.86  E-value=8e-22  Score=176.42  Aligned_cols=129  Identities=16%  Similarity=0.236  Sum_probs=107.8

Q ss_pred             eEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEE
Q 016414          130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK  209 (390)
Q Consensus       130 KiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~Fk  209 (390)
                      |++||||++||.++++|+++|..+| |+.|++|++++|++|++.|...    +|||+|++|+|++|.|+|+|.|||++|+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~   75 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL   75 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence            6899999999999999999999999 9999999999999999999544    9999999999999999999999999999


Q ss_pred             EeceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCE
Q 016414          210 LSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF  273 (390)
Q Consensus       210 I~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~  273 (390)
                      + |+.+++|++..      .|..|...+.++.+..+..+|.  ||..+ ....+|++|..+.++
T Consensus        76 ~-nv~l~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~i~~~~~~  129 (156)
T 1w94_A           76 F-NPSFEMKKPEL------ADKAVRVSSCPPGSEGLCNLMG--LEVDE-SSSRDAWSIRTDEEY  129 (156)
T ss_dssp             E-EEEECSSCCCC------SSCCCEESCCCTTCHHHHHHHT--CEECC-SCCTTEEEEECCSSS
T ss_pred             E-ceEEcccCccc------CCceEEEecCChhHHHHHHHHC--CCccC-CCCceEEEEEeCCCc
Confidence            8 99999999621      1444666667888877777766  34432 234578888755554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	1e-54
d1w94a1	154	c.51.1.2 (A:1-154) Probable ribosomal biogenesis p	4e-43

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  176 bits (447), Expect = 1e-54
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR 189
           +IL+TT R  S R  +F+ +L + IP +  + RG Y ++++   A  +    I+VV   R
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 62

Query: 190 REPDALLIIGLPDGP-----TAHFKLSKLVLRKDIK----NHGNPTGHIPELVLNNFATR 240
             P  ++ +   +GP        F +  + L ++ +    +       +   + +  A  
Sbjct: 63  GNPG-IIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVE 121

Query: 241 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRC 281
                     +     PE  G       +          R 
Sbjct: 122 FADAFVIAFHARLKP-PEAAGYVEAVIESLDARTVAVTFRY 161

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  145 bits (368), Expect = 4e-43
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 17/150 (11%)

Query: 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 190
           +L+TT R  S R  +F   L  ++    Y  RG   L+ ++  A       + VV     
Sbjct: 1   MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHG 55

Query: 191 EPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQ 250
            P  +  +    G    + L                   PEL                + 
Sbjct: 56  NPARITFL-DERGGERGYILFNPSFEMKK----------PELADKAVRVSSCPPGSEGLC 104

Query: 251 SLFPQSPEFRGRR-VVTFHNQRDFIFFRHH 279
           +L     +    R   +     ++ +    
Sbjct: 105 NLMGLEVDESSSRDAWSIRTDEEYAWVMEL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	100.0

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.4e-44  Score=328.57  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=143.5

Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCc----
Q 016414          129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP----  204 (390)
Q Consensus       129 PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GP----  204 (390)
                      -|||||||++||+++++||+||+.+||||.+++|++++|+||+++|..+||||+|||+|++|+| +|+++|+|.||    
T Consensus         2 ~kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~   80 (180)
T d2cxha1           2 YRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPD   80 (180)
T ss_dssp             CEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhCCCCEEeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCcc
Confidence            3899999999999999999999999999999999999999999999999999999999999998 79999999999    


Q ss_pred             -eEEEEEeceeehhhhcc----CCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCEEEEEee
Q 016414          205 -TAHFKLSKLVLRKDIKN----HGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH  279 (390)
Q Consensus       205 -T~~FkI~nv~l~kdI~~----~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~I~FRHy  279 (390)
                       |++|+|+||++++|+.+    +++.+.|.|++|||||+|+||+++++||+++||+ |++.+++||+||||+|+||||+|
T Consensus        81 ~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnnf~t~Lg~~~~~~f~~lf~~-p~~~~~~vvt~~n~~d~if~~~~  159 (180)
T d2cxha1          81 NIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKP-PEAAGYVEAVIESLDARTVAVTF  159 (180)
T ss_dssp             EEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSSTHHHHHHHHHHHHCCBSSC-CSSSCEEEEEEEEEETTEEEEEE
T ss_pred             ceEEEEEEEEEEehhhccccCCCCCCccccchhHhcccchHHHHHHHHHHHhhCCC-chhcCcEEEEEEecCCeEEEEEE
Confidence             99999999999999964    4667889999999999999999999999999997 89999999999999999999999

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=6.3e-37  Score=271.12  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=127.3

Q ss_pred             EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEE
Q 016414          131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL  210 (390)
Q Consensus       131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI  210 (390)
                      ||||||++||+++++||+||..+|||+ +++||++++++|++.|    +|++|||+|++|+|++|.| |+|.|||++|+|
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l   74 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERGYIL   74 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-ECCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-EEEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEEEEE
Confidence            699999999999999999999999986 8999999999999887    7999999999999999998 999999999999


Q ss_pred             eceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCe-EEEEEecCCEEEEEee
Q 016414          211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR-VVTFHNQRDFIFFRHH  279 (390)
Q Consensus       211 ~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RR-VVtF~nq~d~I~FRHy  279 (390)
                      +||++.+|          +|+||+|||++++|+.++++|+++||..|+++++| |++||||+|+|+++||
T Consensus        75 ~~v~l~~e----------~p~li~~~f~t~lg~~v~~~L~~lf~~~~~~~~~~~~itf~n~~d~i~~~~~  134 (154)
T d1w94a1          75 FNPSFEMK----------KPELADKAVRVSSCPPGSEGLCNLMGLEVDESSSRDAWSIRTDEEYAWVMEL  134 (154)
T ss_dssp             EEEEECSS----------CCCCSSCCCEESCCCTTCHHHHHHHTCEECCSCCTTEEEEECCSSSSEEEEE
T ss_pred             eeEEcccc----------CCcCcccccccccchhHHHHHHHHcCCChhhcceeeEEEEecCCCEEEEEEE
Confidence            99998765          79999999999999999999999999988888876 9999999999999999