Citrus Sinensis ID: 016434

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MAWWSSASASSTFNSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccEccccccccccccEEEccccccccccccccEEEEccccEEEEEEEEEcccccccccccccccEcccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mawwssasasstfnsSFLLRSSlssysnkklssnhvahappslfspyitinsfKKRCIIVTNCtttnkknmessstvdcvetgtdveclisptdkeEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFAssqgrklpsgfNAWVSIFLFALVDASCFQGFLAQGLqrtsaglgsviidsqPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLleapafdesnsslwgsGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLnhdpvygesvkeLTSSDILALLYTSIFGSAISYGVYFYsatkgsltklssltfltpMFASIFGFLylgetfsplqlVGAAVTVVAIYLVNFRGSV
Flexible Loop (DISEMBL)
mawwssasasstfnsSFLLRSSLSSYSNKKLSSNHvahappslfspyitINSFKKRCIIVTNCtttnkknmessstvdcvetgTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Low Complexity Region (SEG)
MawwssasasstfnssfllrsslssysnkklssNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESiglvgagglvlgvigllllEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYsatkgsltklssltfltPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Disordered region (IsUnstruct)
*****************************************SLFSPYITINSFKKRCIIVTNCTTTN*********VDCVETGTDVECLI*****************QVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF****
Disordered Region (DISOPRED)
********AS***NSSFLLRSSLS***N*K****HVAHAPPSLFSPYITINSFK************************CVETGTDVEC*****************************WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG**
Disordered Region (DISEMBL)
*************NSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKK*********CVETGTDVECLISPTDK*********QDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Disordered Region (DISPRO)
******************LRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTN*****SSSTVDCVETGTDVECLISPT***************VMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAWWSSASASSTFNSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q93V85	417	WAT1-related protein At3g	yes	no	0.781	0.729	0.714	1e-117
P74436	330	Uncharacterized transport	N/A	no	0.673	0.793	0.478	1e-58
O32256	305	Uncharacterized transport	yes	no	0.652	0.832	0.266	2e-08
O34416	292	Uncharacterized transport	no	no	0.663	0.883	0.237	9e-08
O29740	289	Uncharacterized transport	yes	no	0.622	0.837	0.253	2e-06
P96680	306	Uncharacterized transport	no	no	0.611	0.777	0.247	0.0001
P42194	297	Protein PecM OS=Dickeya d	yes	no	0.616	0.808	0.268	0.0003
O29973	276	Uncharacterized transport	no	no	0.627	0.884	0.204	0.0004

>sp|Q93V85|WTR16_ARATH WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana GN=At3g02690 PE=1 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/329 (71%), Positives = 265/329 (80%), Gaps = 25/329 (7%)

Query: 77  VDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMK 136
           VDCV  G+DVEC+ +  D EE     +   G+    G  LEW VL+SPFFFWGTAMVAMK
Sbjct: 89  VDCVGMGSDVECVNNGED-EENRSSGILSGGE----GTFLEWTVLISPFFFWGTAMVAMK 143

Query: 137 EVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196
           EVLP  G FFVAAFRLIPAGLLL+ FA  +GR LP G NAW SI LFALVDA+CFQGFLA
Sbjct: 144 EVLPITGPFFVAAFRLIPAGLLLVAFAVYKGRPLPEGINAWFSIALFALVDATCFQGFLA 203

Query: 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF--D 254
           QGLQRTSAGLGSVIIDSQPL+VAVLA+ LFGESIG+V AGGL+LGV GLLLLE P+   D
Sbjct: 204 QGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLLGVAGLLLLEVPSVTSD 263

Query: 255 ESNSSLWGSGEWWMLLAAQSMAVGT------------------HMVIGGLPLMVISVLNH 296
            +N SLWGSGEWWMLLAAQSMA+GT                  HMVIGGLPL+ ISV+NH
Sbjct: 264 GNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLAISVINH 323

Query: 297 DPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIF 356
           DPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLTPMFASIF
Sbjct: 324 DPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTPMFASIF 383

Query: 357 GFLYLGETFSPLQLVGAAVTVVAIYLVNF 385
           G+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 384 GYLYLNETFSSLQLVGAAVTLVAIYLVNF 412

Arabidopsis thaliana (taxid: 3702)

>sp|P74436|Y355_SYNY3 Uncharacterized transporter sll0355 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0355 PE=3 SV=1

 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/297 (47%), Positives = 183/297 (61%), Gaps = 35/297 (11%)

Query: 121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
           L++PFF WGTAMVAMK VL     FFVA  RLIPAG+L++ +A  Q R  P  +  W  I
Sbjct: 17  LIAPFFLWGTAMVAMKGVLADTTPFFVATVRLIPAGILVLLWAMGQKRPQPQNWQGWGWI 76

Query: 181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGE-----SIGLVGA 235
            LFALVD + FQGFLAQGL+RT AGLGSVIIDSQP++VA+L++ LF E         +  
Sbjct: 77  ILFALVDGTLFQGFLAQGLERTGAGLGSVIIDSQPIAVALLSSWLFKEVIGGIGWLGLLL 136

Query: 236 GGLVLGVIG--------LLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT-------- 279
           G   + +IG        L  L+  + + S S+L  SGE WMLLA+ SMAVGT        
Sbjct: 137 GVGGISLIGLPDEWFYQLWHLQGLSINWSGSALGSSGELWMLLASLSMAVGTVLIPFVSR 196

Query: 280 ----------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGV 329
                     HM+IGGLPL+ I+++       E  + +       L Y ++FGSAI+YG+
Sbjct: 197 RVDPVVATGWHMIIGGLPLLAIALVQDS----EPWQNIDLWGWGNLAYATVFGSAIAYGI 252

Query: 330 YFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 386
           +FY A+KG+LT LSSLTFLTP+FA  F  L L E  S LQ +G A T+V+IYL+N R
Sbjct: 253 FFYLASKGNLTSLSSLTFLTPIFALSFSNLILEEQLSSLQWLGVAFTLVSIYLINQR 309

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|O32256|YVBV_BACSU Uncharacterized transporter YvbV OS=Bacillus subtilis (strain 168) GN=yvbV PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 119/274 (43%), Gaps = 20/274 (7%)

Query: 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD 187
           WG      K  L  +     A  R +  GLLL+  A  +  KL      W    + AL++
Sbjct: 20  WGVNWPLSKAALAYSPPLLFAGIRTLIGGLLLVIVALPRIHKLRLK-ETWPIYLVSALLN 78

Query: 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247
            + F G    GL    AGL S I+  QP+ + V + L  GES+ ++   GL+LG  G+ +
Sbjct: 79  ITLFYGLQTIGLNYLPAGLFSAIVFFQPVLMGVFSWLWLGESMFVMKVIGLILGFAGVAV 138

Query: 248 LEAPAFDESNSSL-----------WGSGEWWMLLAAQSM----AVGTHMVIGGLPLMVIS 292
           + A  F    S +           W  G  +M      +     V   + IG + L++  
Sbjct: 139 ISAAGFGGHISVIGVLLALGSAVSWALGTVYMKKTGSRVDSIWMVALQLTIGSVFLLISG 198

Query: 293 VLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMF 352
                     S  + T+  I +LL+ S+F  A+ + V+F     G  +K++S TFL P+ 
Sbjct: 199 FWTES----FSAIQWTAPFITSLLFISVFVIALGWLVFFTLVGSGEASKVASYTFLIPLI 254

Query: 353 ASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 386
           + +   ++L E  +   L G  + V +I LVN +
Sbjct: 255 SIVASSIFLHEPLTLSLLAGLLLIVTSICLVNTK 288

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O34416|YOAV_BACSU Uncharacterized transporter YoaV OS=Bacillus subtilis (strain 168) GN=yoaV PE=3 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 33/291 (11%)

Query: 121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
           ++S    WG   VAMK  +        +  RL    + L      Q +KL        S 
Sbjct: 8   IISVTLIWGYTWVAMKVGIHDIPPLLFSGLRLFIGAVPLFLILFIQRKKLSIQKEHLKSY 67

Query: 181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVL 240
            + +L+    + G L  G+Q   +G  SV++ + P+ V V++     E + +    GLV 
Sbjct: 68  IIMSLLMGLGYMGILTYGMQFVDSGKTSVLVYTMPIFVTVISHFSLNEKMNVYKTMGLVC 127

Query: 241 GVIGLLLL---EAPAFDESNSSLWGSGEWWMLLAAQSMAVGT------------------ 279
           G+ GLL +   E    D+S       GE  +L+AA S  +                    
Sbjct: 128 GLFGLLFIFGKEMLNIDQSAL----FGELCVLVAALSWGIANVFSKLQFKHIDIIHMNAW 183

Query: 280 HMVIGGLPLMVISVLNHDPVYGESV--KELTSSDILALLYTSIFGSAISYGVYFYSATKG 337
           H+++G + L+V S +       E+V   E T   + +LL+  +  +  ++ V+F+   + 
Sbjct: 184 HLMMGAVMLLVFSFIF------EAVPSAEWTYQAVWSLLFNGLLSTGFTFVVWFWVLNQI 237

Query: 338 SLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388
             +K S      P+ A  FG+L L E  +   ++GA +    I++  F  S
Sbjct: 238 QASKASMALMFVPVLALFFGWLQLHEQITINIILGALLICCGIFMNTFTFS 288

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O29740|Y510_ARCFU Uncharacterized transporter AF_0510 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0510 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 38/280 (13%)

Query: 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFAS-SQGRKLPSGFNAWVSIFLFALV 186
           W  + + +K  L +   F +A +R + A  LL+ +    +G   PSG + W+ + + AL 
Sbjct: 16  WAGSFIFIKIGLKELDPFNLAFYRFLLASPLLMAWVFWKRGLAKPSG-SEWLHLSVLALS 74

Query: 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLL 246
             +    F    L+ T+A   S++I++  + VA L  L+ GE+       G+ L   G++
Sbjct: 75  GVTLLYAFQFLALKYTTATNASILINTSAVFVA-LWGLVKGEA-NPRKLAGVFLSFAGVV 132

Query: 247 LLEAPAFDE--SNSSLWGS------GEWWML----------------LAAQSMAVGTHMV 282
           L+ +    E  S+ +++G       G  W +                L A + A+GT  +
Sbjct: 133 LIVSKGTLEFFSSKTIFGDVLMIVDGFLWAVYTVLGSKMLLKYDHETLTAYAFALGTIFL 192

Query: 283 IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKL 342
           I   P  ++S    +PV            + ALLY SI  S  +Y V++Y+ T    T +
Sbjct: 193 I---PFALMSGFA-NPV------TFNPETVAALLYLSILCSVFAYVVWYYALTNADSTSV 242

Query: 343 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 382
           +   +L P+F +IF F  L E       +G  +T+  +YL
Sbjct: 243 AVYVYLVPLFTAIFAFYALNEKPDFFTAIGGIITIAGVYL 282

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|P96680|YDFC_BACSU Uncharacterized transporter YdfC OS=Bacillus subtilis (strain 168) GN=ydfC PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 21/259 (8%)

Query: 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD 187
           W +A   ++  L       +A FRL+   + L+ FA     +LP       +IFL   + 
Sbjct: 19  WASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPD-LKDIPAIFLLGFLG 77

Query: 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247
            + +   L  G +  SAG+ S+++ + P+  A+L+ L + E  G     G ++ ++G+LL
Sbjct: 78  FAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLL 137

Query: 248 LEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTHMVI--------GGLPLMV-------IS 292
           +   A D + S    SG   +LLAA S ++  + V         G +P +        I 
Sbjct: 138 IAFGAGDFTYSM---SGILVILLAAFSESI--YFVFQARYIKKYGFIPFVTFTIWGGTIP 192

Query: 293 VLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMF 352
           +L   P  GE +   + S  L+++Y  +  + I Y    Y  +    ++ +   ++TP  
Sbjct: 193 MLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGASEATLSLYVTPAL 252

Query: 353 ASIFGFLYLGETFSPLQLV 371
           A I  +L++GE  + L L+
Sbjct: 253 ALIISWLWIGEIPTLLSLL 271

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P42194|PECM_DICD3 Protein PecM OS=Dickeya dadantii (strain 3937) GN=pecM PE=3 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 39/279 (13%)

Query: 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD 187
           WGT      + LP       A  R +PAG++LI      G+ LP     W  +F+   ++
Sbjct: 14  WGTTYFVTTQFLPADKPLLAALIRALPAGIILIL-----GKNLPPVGWLW-RLFVLGALN 67

Query: 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGL-L 246
              F   L     R   G+ +++   QPL V +L+ LL  + +        V G IG+ L
Sbjct: 68  IGVFFVMLFFAAYRLPGGVVALVGSLQPLIVILLSFLLLTQPVLKKQMVAAVAGGIGIVL 127

Query: 247 LLEAPAFDESNSSLWGSGEWWMLLAAQSMA--------------------VGTHMVIGGL 286
           L+  P    + + L  S      LA  SMA                     G  +  GGL
Sbjct: 128 LISLPKAPLNPAGLVASA-----LATMSMASGLVLTKKWGRPAGMTMLTFTGWQLFCGGL 182

Query: 287 PLMVISVLNHDPVYGESVKEL-TSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSL 345
            ++ + +L       E + +L T +++   LY +I GS ++Y ++F      S   +S L
Sbjct: 183 VILPVQMLT------EPLPDLVTLTNLAGYLYLAIPGSLLAYFMWFSGLEANSPVIMSLL 236

Query: 346 TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 384
            FL+P+ A + GFL+L +  S  QLVG      A+ +V 
Sbjct: 237 GFLSPLVALLLGFLFLQQGLSGAQLVGVVFIFSALIIVQ 275

Involved in pectinase, cellulase, and blue pigment regulation.

Dickeya dadantii (strain 3937) (taxid: 198628)

>sp|O29973|Y266_ARCFU Uncharacterized transporter AF_0266 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0266 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 49/293 (16%)

Query: 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPA----GLLLITFASSQGRKLPS 172
           +W VL     FWG A  A+K  +       +A+ R   A     +++I     + + LP 
Sbjct: 3   KWIVLALTVTFWGLAFTAIKYSVRFLSPIAIASLRFAIANTLFAVIIILGKRIKWKDLPK 62

Query: 173 GFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGL 232
                  +F   +   S +  FL  G    S+G+ SV+I   P+ V +L+A+   E I  
Sbjct: 63  -------VFALGIFGVSVYHVFLNLGEVYISSGVASVVISLAPIFVLILSAIFLRERITY 115

Query: 233 VGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTH------------ 280
               G+++  +G++++  P++    ++++G      L+   ++A   +            
Sbjct: 116 SKVVGIIIAFLGVVVISEPSY----ANIYGIA----LVMVSTVAAAIYTTFGKSLLSKYN 167

Query: 281 --------MVIGGLPLMVISVLNHDPVYGESVKELTS--SDILALLYTSIFGSAISYGVY 330
                   MV+G +PL         P   +S++ L    + I ++++  IF +   Y  +
Sbjct: 168 PITLTSNAMVLGSIPLY--------PFLPDSIRSLGGDLNLIGSIVFLGIFSTFFGYLGW 219

Query: 331 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 383
           +Y   K   ++ S      P+ + + G + L E  +   + G+ + ++ IY+V
Sbjct: 220 YYFLEKEEASRASVFLLAIPVVSLLAGNILLAEPLTLRTVAGSGLVLLGIYIV 272

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
356569422	412	PREDICTED: uncharacterized transporter s	0.974	0.919	0.627	1e-128
356537734	412	PREDICTED: uncharacterized transporter s	0.830	0.783	0.699	1e-126
297828730	424	integral membrane family protein [Arabid	0.933	0.856	0.648	1e-119
255579425	475	Protein pecM, putative [Ricinus communis	0.953	0.781	0.637	1e-118
18396278	417	nodulin MtN21 /EamA-like transporter pro	0.781	0.729	0.714	1e-115
225466171	382	PREDICTED: uncharacterized transporter s	0.709	0.722	0.770	1e-114
6957732	432	unknown protein [Arabidopsis thaliana]	0.781	0.703	0.680	1e-113
449445186	424	PREDICTED: uncharacterized transporter s	0.856	0.785	0.656	1e-109
224119940	279	predicted protein [Populus trichocarpa]	0.660	0.921	0.790	1e-106
116786937	464	unknown [Picea sitchensis]	0.843	0.706	0.593	1e-105

>gi|356569422|ref|XP_003552900.1| PREDICTED: uncharacterized transporter sll0355-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/416 (62%), Positives = 303/416 (72%), Gaps = 37/416 (8%)

Query: 2   AWWSSASASSTFNSSFLLR--SSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCII 59
           +WW S+ +++   S+   R  S LS  S  ++ +      PPS F+ + T     +  + 
Sbjct: 3   SWWCSSPSATLTVSTTTTRHFSLLSHTSQFRIQTLTF---PPSSFTRFTTAPPSLRFRVP 59

Query: 60  VTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLL--- 116
            +N T    +  E    VDCV TG DVECL+   + EE + E             +L   
Sbjct: 60  CSNKTAFETELPEDG--VDCVGTGQDVECLV---NTEEKQSEPSSSSSSSSSSSSMLCLA 114

Query: 117 ----EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS 172
               E AVLVSPFFFWGTAMVAMKEVLPK G FFV+AFRLIPAG LL+ FA+S+GR LPS
Sbjct: 115 EALWEGAVLVSPFFFWGTAMVAMKEVLPKCGPFFVSAFRLIPAGFLLVAFAASRGRTLPS 174

Query: 173 GFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGL 232
           GFNAW+SI LFALVDA+CFQGFLA+GLQRTSAGLGSVIIDSQPL+VAVLAALLFGESIG+
Sbjct: 175 GFNAWLSITLFALVDAACFQGFLAEGLQRTSAGLGSVIIDSQPLTVAVLAALLFGESIGV 234

Query: 233 VGAGGLVLGVIGLLLLEAPA--FDESNSSLWGSGEWWMLLAAQSMAVGT----------- 279
           VGA GLVLGVIGL+LLE PA  FDESN SLWGSGEWWMLLAAQSMA+GT           
Sbjct: 235 VGAAGLVLGVIGLVLLELPALSFDESNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSD 294

Query: 280 -------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFY 332
                  HMVIGGLPL++ +VLN+DP    S+KE +S+DILALLYTSIFGSA+SYGV+FY
Sbjct: 295 PVMATGWHMVIGGLPLVLFAVLNNDPAVSLSLKEYSSTDILALLYTSIFGSAVSYGVFFY 354

Query: 333 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388
           SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSP+QLVGA VTV  IY+VNFR +
Sbjct: 355 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGALVTVAGIYMVNFRST 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537734|ref|XP_003537380.1| PREDICTED: uncharacterized transporter sll0355-like [Glycine max]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/346 (69%), Positives = 273/346 (78%), Gaps = 23/346 (6%)

Query: 66  TNKKNMESS---STVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLV 122
           +NK   E+      VDCV TG DVECL++  +K+            +     L E AVLV
Sbjct: 65  SNKTAFETELPEDGVDCVGTGQDVECLVNTEEKQSEPTSSSSSSSMLCLAEALWEGAVLV 124

Query: 123 SPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFL 182
           SPFFFWGTAMVAMKEVLPK G FFV+AFRLIPAG LL+ FA+S+GR LPSGF AW+SI L
Sbjct: 125 SPFFFWGTAMVAMKEVLPKCGPFFVSAFRLIPAGFLLVAFAASRGRSLPSGFIAWLSITL 184

Query: 183 FALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGV 242
           FALVDA+CFQGFLA+GLQRTSAGLGS+IIDSQPL+VAVLAALLFGESIG+VGA GLVLGV
Sbjct: 185 FALVDATCFQGFLAEGLQRTSAGLGSIIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGV 244

Query: 243 IGLLLLEAPA--FDESNSSLWGSGEWWMLLAAQSMAVGT------------------HMV 282
           IGL+LLE PA  FDESN SLWGSGEWWMLLAAQSMAVGT                  HMV
Sbjct: 245 IGLVLLELPALSFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV 304

Query: 283 IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKL 342
           IGGLPL++ +VLN+DP    S+KE +S+DILALLYTS+FGSA+SYGV+FYSATKGSLTKL
Sbjct: 305 IGGLPLVLFAVLNNDPALSLSLKEYSSTDILALLYTSVFGSAVSYGVFFYSATKGSLTKL 364

Query: 343 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388
           SSLTFLTPMFASIFGFLYLGETFSP+QLVGA VTV  IY+VN R +
Sbjct: 365 SSLTFLTPMFASIFGFLYLGETFSPVQLVGALVTVAGIYMVNLRST 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828730|ref|XP_002882247.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297328087|gb|EFH58506.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/396 (64%), Positives = 299/396 (75%), Gaps = 33/396 (8%)

Query: 18  LLRSSLSSYSNKKLSSNHVAHAPPSLF-SPYITINSFKKRC---IIVTNCTTTNKKNMES 73
           + R + SS +NK  S+  V     S F S +I ++ FK+R     +V   TT+NK   E+
Sbjct: 29  ITRRANSSCANKYPSNILVKSLRHSRFDSKHILVSIFKRRINGDSVVRRSTTSNKSTEET 88

Query: 74  SST----VDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWG 129
            S+    VDCV  G+DVEC+ +  D EE     +   G+    G LLEW VL+SPFFFWG
Sbjct: 89  ESSSSSSVDCVGMGSDVECVYNGED-EENRSSGILNGGE----GTLLEWTVLISPFFFWG 143

Query: 130 TAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDAS 189
           TAMVAMKEVLP  G FFVAAFRLIPAGLLL+ FA  + R LP G NAW+SI LFALVDA+
Sbjct: 144 TAMVAMKEVLPITGPFFVAAFRLIPAGLLLVAFAVYKARPLPKGINAWLSIALFALVDAT 203

Query: 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249
           CFQGFLAQGLQRTSAGLGSVIIDSQPL+VAVLA+ LFGESIG+V AGGL+LGV GLLLLE
Sbjct: 204 CFQGFLAQGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLLGVAGLLLLE 263

Query: 250 APAF--DESNSSLWGSGEWWMLLAAQSMAVGT------------------HMVIGGLPLM 289
            P+   D +N SLWGSGEWWMLLAAQSMA+GT                  HMVIGGLPL+
Sbjct: 264 VPSVTSDGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLL 323

Query: 290 VISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLT 349
            ISV+NHDPV+  S++EL+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLT
Sbjct: 324 AISVINHDPVFNGSLQELSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLT 383

Query: 350 PMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 385
           PMFASIFG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 384 PMFASIFGYLYLNETFSSLQLVGAAVTLVAIYLVNF 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579425|ref|XP_002530556.1| Protein pecM, putative [Ricinus communis] gi|223529894|gb|EEF31824.1| Protein pecM, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 266/417 (63%), Positives = 309/417 (74%), Gaps = 46/417 (11%)

Query: 18  LLRSSLSSYSNKKLSSNHVAHAP-------PSLFSPYITINSFKKRCI---IVTNCTTTN 67
           LL  SL +  + K S  H++  P       PS  S +   +S +        + NCTT++
Sbjct: 3   LLSPSLPNNLSVKFSLLHISPPPYNRLFKYPSPISSHTITDSTRTTRRRPNFIANCTTSS 62

Query: 68  KK-NMESSST----VDCVETGTDVECLISP----------TDKEEIEQEQVEQDGQVMEL 112
           +   +ES+S+    +DCV TG DVECLIS           T+   +EQ + E++ +  +L
Sbjct: 63  RNVGLESTSSDSTDLDCVGTGLDVECLISSESSSNGTMSSTETTAVEQGREERESKRDDL 122

Query: 113 -GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP 171
             M++E  VLVSPFFFWGTAMVAMKEVLP  G FFVAAFRLIPAGL+LI FA+ + R  P
Sbjct: 123 LEMVVENGVLVSPFFFWGTAMVAMKEVLPLTGPFFVAAFRLIPAGLILIAFAAYKDRPFP 182

Query: 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIG 231
           SGFNAW+SIFLF LVDA+ FQGFLA+GLQRTSAGLGSVIIDSQPL+VAVLAALLFGESIG
Sbjct: 183 SGFNAWLSIFLFGLVDATFFQGFLAEGLQRTSAGLGSVIIDSQPLTVAVLAALLFGESIG 242

Query: 232 LVGAGGLVLGVIGLLLLEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGT---------- 279
           LVGAGGLVLGV+GLLLLE PA   D+SN SLWGSGEWWMLLAAQSMAVGT          
Sbjct: 243 LVGAGGLVLGVVGLLLLEVPALSIDQSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVTKYS 302

Query: 280 --------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 331
                   HMVIGGLPL VIS+LNHDP++  S++ELT SDI ALLYTSIFGSAISYGV+F
Sbjct: 303 DPVMATGWHMVIGGLPLTVISILNHDPLFNGSLQELTVSDIAALLYTSIFGSAISYGVFF 362

Query: 332 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388
           YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL GAAVT+VAIY++   G+
Sbjct: 363 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLFGAAVTLVAIYMLGPPGA 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396278|ref|NP_566180.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|16226571|gb|AAL16203.1|AF428434_1 AT3g02690/F16B3_32 [Arabidopsis thaliana] gi|15010664|gb|AAK73991.1| AT3g02690/F16B3_32 [Arabidopsis thaliana] gi|21593005|gb|AAM64954.1| unknown [Arabidopsis thaliana] gi|22137110|gb|AAM91400.1| At3g02690/F16B3_32 [Arabidopsis thaliana] gi|332640327|gb|AEE73848.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/329 (71%), Positives = 265/329 (80%), Gaps = 25/329 (7%)

Query: 77  VDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMK 136
           VDCV  G+DVEC+ +  D EE     +   G+    G  LEW VL+SPFFFWGTAMVAMK
Sbjct: 89  VDCVGMGSDVECVNNGED-EENRSSGILSGGE----GTFLEWTVLISPFFFWGTAMVAMK 143

Query: 137 EVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196
           EVLP  G FFVAAFRLIPAGLLL+ FA  +GR LP G NAW SI LFALVDA+CFQGFLA
Sbjct: 144 EVLPITGPFFVAAFRLIPAGLLLVAFAVYKGRPLPEGINAWFSIALFALVDATCFQGFLA 203

Query: 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF--D 254
           QGLQRTSAGLGSVIIDSQPL+VAVLA+ LFGESIG+V AGGL+LGV GLLLLE P+   D
Sbjct: 204 QGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLLGVAGLLLLEVPSVTSD 263

Query: 255 ESNSSLWGSGEWWMLLAAQSMAVGT------------------HMVIGGLPLMVISVLNH 296
            +N SLWGSGEWWMLLAAQSMA+GT                  HMVIGGLPL+ ISV+NH
Sbjct: 264 GNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLAISVINH 323

Query: 297 DPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIF 356
           DPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLTPMFASIF
Sbjct: 324 DPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTPMFASIF 383

Query: 357 GFLYLGETFSPLQLVGAAVTVVAIYLVNF 385
           G+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 384 GYLYLNETFSSLQLVGAAVTLVAIYLVNF 412

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466171|ref|XP_002263956.1| PREDICTED: uncharacterized transporter sll0355 [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/296 (77%), Positives = 253/296 (85%), Gaps = 20/296 (6%)

Query: 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSG 173
           +L EW VLVSPFFFWGTAMVAMK+VLPKAG FFV++FRLIPAGLL+I +A+S+GRK PSG
Sbjct: 86  VLWEWGVLVSPFFFWGTAMVAMKQVLPKAGPFFVSSFRLIPAGLLIIAYAASRGRKQPSG 145

Query: 174 FNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLV 233
           F+AW+SIFLFALVDA+CFQGFLA+GLQRTSAGLGSVIIDSQPL+VAVLAALLFGESIG +
Sbjct: 146 FSAWLSIFLFALVDAACFQGFLAEGLQRTSAGLGSVIIDSQPLTVAVLAALLFGESIGFI 205

Query: 234 GAGGLVLGVIGLLLLEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGT------------ 279
           GA GLVLGVIGLLLLE PA   D SN SLWGSGEWWMLLAAQSMAVGT            
Sbjct: 206 GAAGLVLGVIGLLLLEVPALSVDGSNFSLWGSGEWWMLLAAQSMAVGTVMIRWVTKYSDP 265

Query: 280 ------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS 333
                 HMVIGGLPL++IS+LNHDP    S  ELTSSD+LALLYTSIFGSAISY V+FY 
Sbjct: 266 VMATGWHMVIGGLPLVLISILNHDPALSGSFNELTSSDLLALLYTSIFGSAISYSVFFYY 325

Query: 334 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV 389
           AT+GSLTKLSSLTFLTPMFASIFGFLYLGET SPLQLVGA VT++ IY+VN+R S+
Sbjct: 326 ATRGSLTKLSSLTFLTPMFASIFGFLYLGETLSPLQLVGALVTILGIYMVNYRDSM 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6957732|gb|AAF32476.1| unknown protein [Arabidopsis thaliana]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/344 (68%), Positives = 265/344 (77%), Gaps = 40/344 (11%)

Query: 77  VDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMK 136
           VDCV  G+DVEC ++  + EE     +   G+    G  LEW VL+SPFFFWGTAMVAMK
Sbjct: 89  VDCVGMGSDVEC-VNNGEDEENRSSGILSGGE----GTFLEWTVLISPFFFWGTAMVAMK 143

Query: 137 EVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ---- 192
           EVLP  G FFVAAFRLIPAGLLL+ FA  +GR LP G NAW SI LFALVDA+CFQ    
Sbjct: 144 EVLPITGPFFVAAFRLIPAGLLLVAFAVYKGRPLPEGINAWFSIALFALVDATCFQILVC 203

Query: 193 -----------GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLG 241
                      GFLAQGLQRTSAGLGSVIIDSQPL+VAVLA+ LFGESIG+V AGGL+LG
Sbjct: 204 MLVMLVRIMVQGFLAQGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLLG 263

Query: 242 VIGLLLLEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGT------------------HM 281
           V GLLLLE P+   D +N SLWGSGEWWMLLAAQSMA+GT                  HM
Sbjct: 264 VAGLLLLEVPSVTSDGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHM 323

Query: 282 VIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTK 341
           VIGGLPL+ ISV+NHDPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTK
Sbjct: 324 VIGGLPLLAISVINHDPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTK 383

Query: 342 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 385
           LSSLTFLTPMFASIFG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 384 LSSLTFLTPMFASIFGYLYLNETFSSLQLVGAAVTLVAIYLVNF 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445186|ref|XP_004140354.1| PREDICTED: uncharacterized transporter sll0355-like [Cucumis sativus]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/364 (65%), Positives = 277/364 (76%), Gaps = 31/364 (8%)

Query: 53  FKKRCIIVTNCTTTN-KKNMESSSTVDCVETGTDVECLISPTDKEEIEQ----------E 101
           F    I V NCT +     ++ + ++DCV T  DVEC++SP D++               
Sbjct: 56  FHYVAIPVANCTRSGGDTELDFTESIDCVGTAQDVECVVSPNDEDPSSSIGVPLKLGISS 115

Query: 102 QVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLIT 161
               DG V  L    E+AVLVSPFFFWGTAMVAMKEVLP++G FFV+AFRLIPAG LLI 
Sbjct: 116 DYSGDGSVAVLEKAWEFAVLVSPFFFWGTAMVAMKEVLPRSGPFFVSAFRLIPAGFLLIA 175

Query: 162 FASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVL 221
           FA+ +GR  PSGF+AW+SI LFALVDA+ FQGFLAQGLQRTSAGLGSVIIDSQPL+VAVL
Sbjct: 176 FAAFRGRPFPSGFSAWISIILFALVDATFFQGFLAQGLQRTSAGLGSVIIDSQPLTVAVL 235

Query: 222 AALLFGESIGLVGAGGLVLGVIGLLLLEAPA--FDESNSSLWGSGEWWMLLAAQSMAVGT 279
           AA LFGES+GLVGA GLVLGV+GLLLLE P+  FD ++ SLWGSGEWWM LAAQSMAVGT
Sbjct: 236 AAFLFGESLGLVGAAGLVLGVLGLLLLEVPSLTFDANSFSLWGSGEWWMFLAAQSMAVGT 295

Query: 280 ------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 321
                             HMVIGGLPL++I +LNHDP    S+K+ T++DILALLY SIF
Sbjct: 296 VMVRWVSKYSDPIMATGWHMVIGGLPLLMICILNHDPAVSGSLKDFTTNDILALLYASIF 355

Query: 322 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIY 381
           GSA+SYG +FYSATKGSLTKLSSLTFLTPMFAS+FGFLYLGETFSP+QLVGA VTVVAIY
Sbjct: 356 GSAVSYGSFFYSATKGSLTKLSSLTFLTPMFASVFGFLYLGETFSPIQLVGAVVTVVAIY 415

Query: 382 LVNF 385
           +VN+
Sbjct: 416 VVNY 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119940|ref|XP_002318202.1| predicted protein [Populus trichocarpa] gi|222858875|gb|EEE96422.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/277 (79%), Positives = 235/277 (84%), Gaps = 20/277 (7%)

Query: 132 MVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF 191
           MVAMKEVLP  G FFV++FRLIPAGLLL+ FA  +GR LPSG  AW++I LFALVDASCF
Sbjct: 1   MVAMKEVLPLTGPFFVSSFRLIPAGLLLVAFAGFKGRPLPSGLTAWLTITLFALVDASCF 60

Query: 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251
           QGFLAQGLQRTSAGLGSVIIDSQPL+VA+LA LLFGESIG+VGA GLVLGVIGLLLLE P
Sbjct: 61  QGFLAQGLQRTSAGLGSVIIDSQPLTVAILANLLFGESIGIVGASGLVLGVIGLLLLEVP 120

Query: 252 A--FDESNSSLWGSGEWWMLLAAQSMAVGT------------------HMVIGGLPLMVI 291
              FDESN SLWGSGEWWMLLAAQSMAVGT                  HMVIGGLPL+ I
Sbjct: 121 TLTFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLLAI 180

Query: 292 SVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM 351
           SVLNHDP +  S+K+LT+SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM
Sbjct: 181 SVLNHDPAFNLSLKDLTASDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM 240

Query: 352 FASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 388
           FASIFGFLYLGETFSPLQL GA VTVVAIY+VN+R S
Sbjct: 241 FASIFGFLYLGETFSPLQLAGAIVTVVAIYMVNYRNS 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116786937|gb|ABK24307.1| unknown [Picea sitchensis]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/381 (59%), Positives = 269/381 (70%), Gaps = 53/381 (13%)

Query: 61  TNCTTTNK-KNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVM--------- 110
           T   TT+K   M  S  +DC++ G DVEC++ PT  EE      + + + +         
Sbjct: 80  TPTITTHKIPEMGPSVEMDCIDNGLDVECVV-PTTAEEANGRPTDAEDEKLLPNSFSFDM 138

Query: 111 ----ELGMLL----EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITF 162
               E+G LL    +  VL+SPFFFWG++MVAMKEVLPK G  FVAA RLIP+GLLLI+F
Sbjct: 139 TEKQEMGGLLNAIRDTLVLISPFFFWGSSMVAMKEVLPKTGPLFVAAVRLIPSGLLLISF 198

Query: 163 ASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222
           A   G+K PSG  AW+S+ LF LVDA CFQGFLA+GL RTSAGLGSVIIDSQPL+VAVLA
Sbjct: 199 AHYSGKKQPSGLMAWLSVALFGLVDAGCFQGFLAEGLTRTSAGLGSVIIDSQPLTVAVLA 258

Query: 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAF----------------DESNSSLWGSGEW 266
           A+ +GESIG +GA GLVLGVIGLLLLE PAF                 +S S+LWGSGEW
Sbjct: 259 AIFYGESIGTIGAAGLVLGVIGLLLLEVPAFYGNDISETVVSQSEVVQKSISTLWGSGEW 318

Query: 267 WMLLAAQSMAVGT------------------HMVIGGLPLMVISVLNHDPVYGESVKELT 308
           WMLLAAQSMAVGT                  HM+IGGLPL+V+SV+ HDP +  S++EL 
Sbjct: 319 WMLLAAQSMAVGTVMVRWVCKYSDPVMATGWHMIIGGLPLLVLSVIKHDPAFTGSLQELD 378

Query: 309 SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPL 368
             D LAL+YTSIFGSAISYGVYFY+AT+GSLTKLSSLTFLTPMFASIFG+  L ETFSP+
Sbjct: 379 YGDWLALIYTSIFGSAISYGVYFYNATRGSLTKLSSLTFLTPMFASIFGYFLLDETFSPI 438

Query: 369 QLVGAAVTVVAIYLVNFRGSV 389
           QL+GA VTV+AIY+VN R +V
Sbjct: 439 QLLGALVTVIAIYMVNTRNNV 459

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2076954	417	AT3G02690 [Arabidopsis thalian	0.557	0.520	0.625	1.4e-103
UNIPROTKB|Q3Z7M8	287	DET1056 "Membrane protein, put	0.665	0.902	0.239	5.6e-13
TIGR_CMR|DET_1056	287	DET_1056 "membrane protein, pu	0.665	0.902	0.239	5.6e-13
TIGR_CMR|SPO_3584	306	SPO_3584 "membrane protein, dr	0.241	0.307	0.297	3.8e-10
UNIPROTKB|Q5LM21	292	SPO3743 "Membrane protein, put	0.658	0.876	0.218	5e-08
TIGR_CMR|SPO_3743	292	SPO_3743 "membrane protein, pu	0.658	0.876	0.218	5e-08
UNIPROTKB|P0AA70	306	yedA "putative membrane transp	0.686	0.872	0.227	1.7e-07
TIGR_CMR|BA_2672	304	BA_2672 "transporter, EamA fam	0.650	0.832	0.192	3.7e-07
TIGR_CMR|BA_2736	305	BA_2736 "transporter, EamA fam	0.264	0.337	0.268	1.2e-06
UNIPROTKB|Q8E8X4	284	SO_4527 "10 TMS drug/metabolit	0.251	0.345	0.285	2.2e-06

TAIR|locus:2076954 AT3G02690 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
 Identities = 140/224 (62%), Positives = 159/224 (70%)

Query:    61 TNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAV 120
             +N +T   ++  SSS+VDCV  G+DVEC+ +  D EE     +   G+    G  LEW V
Sbjct:    73 SNNSTEETESSSSSSSVDCVGMGSDVECVNNGED-EENRSSGILSGGE----GTFLEWTV 127

Query:   121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
             L+SPFFFWGTAMVAMKEVLP  G FFVAAFRLIPAGLLL+ FA  +GR LP G NAW SI
Sbjct:   128 LISPFFFWGTAMVAMKEVLPITGPFFVAAFRLIPAGLLLVAFAVYKGRPLPEGINAWFSI 187

Query:   181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXX 240
              LFALVDA+CFQGFLAQGLQRTSAGLGSVIIDSQPL+VAVLA+ LFGES           
Sbjct:   188 ALFALVDATCFQGFLAQGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLL 247

Query:   241 XXXXXXXXEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTHMV 282
                     E P+   D +N SLWGSGEWWMLLAAQSMA+GT MV
Sbjct:   248 GVAGLLLLEVPSVTSDGNNFSLWGSGEWWMLLAAQSMAIGTVMV 291

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|Q3Z7M8 DET1056 "Membrane protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 188 (71.2 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 68/284 (23%), Positives = 114/284 (40%)

Query:   121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
             L+    FW +A  A++  L       +A  R + A L L+ +A     +LP   +   +I
Sbjct:     9 LIFTILFWSSAFAAIRVSLADYSPSHLALLRFLVASLALVIYALITRMRLPDKRDL-PAI 67

Query:   181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXX 240
             FL  L+  S +   L  G +  +AG  S+II S P+   +LA   + +            
Sbjct:    68 FLLGLIGISLYHFALNYGEKTVTAGAASLIIASAPIFSVLLARFFYKDKLTPAGWLGILL 127

Query:   241 XXXXXXXXEAPAFDESNSSLWGSGEWWMLLAAQSMAV-----------------GTHMVI 283
                           E  +  +    +W+LLAA   ++                  T+ + 
Sbjct:   128 SFGGIAVI---TLGEGQTLSFEPHAFWVLLAALFTSIYIVFQRPLLKKYSGFEFSTYAIW 184

Query:   284 GGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXX 343
              G  L+++      P   + + E  +S  LA++Y  IF +AISY +Y Y           
Sbjct:   185 AGTLLLMVGA----PGLLKEISEAPASSTLAVVYLGIFPTAISYLLYSYALSKARISQVI 240

Query:   344 XXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 387
                   P+FA    FL+LGE  +P+ L+G  + +  + LVN  G
Sbjct:   241 SFLYLNPVFAIGIAFLWLGEIPAPISLLGGLLALAGVILVNRYG 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1056 DET_1056 "membrane protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 188 (71.2 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 68/284 (23%), Positives = 114/284 (40%)

Query:   121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
             L+    FW +A  A++  L       +A  R + A L L+ +A     +LP   +   +I
Sbjct:     9 LIFTILFWSSAFAAIRVSLADYSPSHLALLRFLVASLALVIYALITRMRLPDKRDL-PAI 67

Query:   181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXX 240
             FL  L+  S +   L  G +  +AG  S+II S P+   +LA   + +            
Sbjct:    68 FLLGLIGISLYHFALNYGEKTVTAGAASLIIASAPIFSVLLARFFYKDKLTPAGWLGILL 127

Query:   241 XXXXXXXXEAPAFDESNSSLWGSGEWWMLLAAQSMAV-----------------GTHMVI 283
                           E  +  +    +W+LLAA   ++                  T+ + 
Sbjct:   128 SFGGIAVI---TLGEGQTLSFEPHAFWVLLAALFTSIYIVFQRPLLKKYSGFEFSTYAIW 184

Query:   284 GGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXX 343
              G  L+++      P   + + E  +S  LA++Y  IF +AISY +Y Y           
Sbjct:   185 AGTLLLMVGA----PGLLKEISEAPASSTLAVVYLGIFPTAISYLLYSYALSKARISQVI 240

Query:   344 XXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 387
                   P+FA    FL+LGE  +P+ L+G  + +  + LVN  G
Sbjct:   241 SFLYLNPVFAIGIAFLWLGEIPAPISLLGGLLALAGVILVNRYG 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|SPO_3584 SPO_3584 "membrane protein, drug/metabolite transporter (DMT) family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 112 (44.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
 Identities = 30/101 (29%), Positives = 46/101 (45%)

Query:   128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVS-IFLFALV 186
             WG++     + LP    F VA  R +PAGLLL+       RKLP     W+  + +   +
Sbjct:    21 WGSSYFVTTQFLPAHSPFVVALLRALPAGLLLMLLV----RKLPP--RGWIGRLLILGAL 74

Query:   187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFG 227
             + + F   L     R   G+ + +   QPL V  L+A+  G
Sbjct:    75 NFAVFWSLLFVAAYRLPGGVAATVGAVQPLLVVFLSAVALG 115

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q5LM21 SPO3743 "Membrane protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 148 (57.2 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 59/270 (21%), Positives = 104/270 (38%)

Query:   126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFAL 185
             F W +A  + + ++  A   F  A R + +GLL +  A + G+      N W +  +F +
Sbjct:    14 FMWSSAFSSARIIVADASPLFSLACRFLISGLLGVIIARAMGQTWRLTRNQWKATIVFGI 73

Query:   186 VDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXXXXXXX 245
                + + G     +Q   A + ++I  + PL VA+ +  LFGE                 
Sbjct:    74 CQNALYLGLNFYAMQTVEASVAAIIASTMPLLVALASWGLFGERLPALGIAGLLAGFLGV 133

Query:   246 XXXEAPAFDESNSSLWG---SGEWWMLLAAQSMAV------GTHMVIGGLPLMVISVLNH 296
                       +   L+G    G   + LAA ++A+      G  M++ GL ++V S +  
Sbjct:   134 ALIMGARIG-AGVDLFGVLLCGLGALALAAATLALRGATSGGNFMMVVGLQMLVGSAVLF 192

Query:   297 --DPVYGESVKELTSSDI-LALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFA 353
                P++ E+V    +  + LA  YT++     +  V+                   P+F 
Sbjct:   193 LATPIF-ETVHVTPTLPLALAFAYTTLVPGLTATFVWVLLLNRIGAIRAATFHFLNPVFG 251

Query:   354 SIFGFLYLGETFSPLQLVGAAVTVVAIYLV 383
                    LGE    L  +G A+T   I  V
Sbjct:   252 VAIAAALLGERLGALDAIGVAITTAGILAV 281

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3743 SPO_3743 "membrane protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 148 (57.2 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 59/270 (21%), Positives = 104/270 (38%)

Query:   126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFAL 185
             F W +A  + + ++  A   F  A R + +GLL +  A + G+      N W +  +F +
Sbjct:    14 FMWSSAFSSARIIVADASPLFSLACRFLISGLLGVIIARAMGQTWRLTRNQWKATIVFGI 73

Query:   186 VDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXXXXXXX 245
                + + G     +Q   A + ++I  + PL VA+ +  LFGE                 
Sbjct:    74 CQNALYLGLNFYAMQTVEASVAAIIASTMPLLVALASWGLFGERLPALGIAGLLAGFLGV 133

Query:   246 XXXEAPAFDESNSSLWG---SGEWWMLLAAQSMAV------GTHMVIGGLPLMVISVLNH 296
                       +   L+G    G   + LAA ++A+      G  M++ GL ++V S +  
Sbjct:   134 ALIMGARIG-AGVDLFGVLLCGLGALALAAATLALRGATSGGNFMMVVGLQMLVGSAVLF 192

Query:   297 --DPVYGESVKELTSSDI-LALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFA 353
                P++ E+V    +  + LA  YT++     +  V+                   P+F 
Sbjct:   193 LATPIF-ETVHVTPTLPLALAFAYTTLVPGLTATFVWVLLLNRIGAIRAATFHFLNPVFG 251

Query:   354 SIFGFLYLGETFSPLQLVGAAVTVVAIYLV 383
                    LGE    L  +G A+T   I  V
Sbjct:   252 VAIAAALLGERLGALDAIGVAITTAGILAV 281

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P0AA70 yedA "putative membrane transport protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 66/290 (22%), Positives = 109/290 (37%)

Query:   110 MELGMLLE-WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR 168
             M    LL  +  L + +  WG+    ++  +       +A  R + AG+LL+ F   +G 
Sbjct:     1 MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGH 60

Query:   169 KLPSGFNAWVSIFLFALVDASCFQGFLAQGL-QRTSAGLGSVIIDSQPLSVAVLAALLFG 227
             KLP      ++  L  L+  +   G +     Q   +G+ +V++ + PL     + L FG
Sbjct:    61 KLPP-LRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FG 118

Query:   228 ESXXXXXXXXXXXXXXXXXXXEAPAFDESN----------SSLWGSGEWW---MLLAAQS 274
                                   +      N          S  W  G  +   + L    
Sbjct:   119 IKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGM 178

Query:   275 MAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTS-SDILALLYTSIFGSAISYGVYFYX 333
             MA    M+  G+ LM+ S+     + GE +  L S S  LA+ Y ++FGS I+   Y Y 
Sbjct:   179 MAGAIEMLAAGVVLMIASM-----IAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYL 233

Query:   334 XXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 383
                             P+ A + G    GET S ++ +   V V A+ LV
Sbjct:   234 IRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLV 283

GO:0055085 "transmembrane transport" evidence=IMP;RCA

GO:0022857 "transmembrane transporter activity" evidence=IMP;RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|BA_2672 BA_2672 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 52/270 (19%), Positives = 117/270 (43%)

Query:   128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD 187
             WG+A  A++  L       +   RL+ A ++L+ F+     +LP       +IF+F  + 
Sbjct:    21 WGSAFPAIRMGLESYTPEHLTLLRLLIASVILLLFSFIYKLRLPD-LKDIPAIFIFGALG 79

Query:   188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESXXXXXXXXXXXXXXXXXX 247
              + +   L  G +  +AG  S+I+   P+  A+ A++   E                   
Sbjct:    80 FTFYHIALNYGEKTVNAGSASLIVSVTPIVTAIFASVFMNEKMKLNGWIGGVISFIGIAF 139

Query:   248 XEAPAFDESNSSLWGSGEWWMLLAAQSMAV-----GTHMV-IGGLPLMVISVLNHDP--- 298
                 +F + ++    SG  ++LLAA S ++      +++   G LP  + ++L+      
Sbjct:   140 I---SFSQGDAIQLNSGALFILLAAISESLFFVFQSSYLKKYGFLPFTIYTILSSTVCML 196

Query:   299 VYGESV-KELTSSDI---LALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFAS 354
             ++   + +E+ ++ +   L+++Y  +F + + Y    Y                 P+ A 
Sbjct:   197 IFLPGMYQEILAAPLEVNLSVIYLGVFPTVLPYIALAYIISRAGASEATSSLYLTPITAC 256

Query:   355 IFGFLYLGETFSPLQLVGAAVTVVAIYLVN 384
                +++LGE  + + ++G  +T++ I +V+
Sbjct:   257 FVAWIWLGEVPTLVSIIGGGITILGIVIVH 286

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

TIGR_CMR|BA_2736 BA_2736 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 119 (46.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 29/108 (26%), Positives = 50/108 (46%)

Query:   278 GTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDIL-ALLYTSIFGSAISYGVYFYXXXX 336
             G  M  GG+ L+++S +   P    +V  L S  +   +LY    GS   +G+Y++    
Sbjct:   184 GIQMFYGGVLLLIVSFIVEQP----NVTVLASWSVQWPILYLIFIGSIGGHGLYYWLLSK 239

Query:   337 XXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 384
                          P+ A I G++ LGE  +P+  +GA   +V ++L N
Sbjct:   240 TNPVFPSTWLYVSPLIAIIVGYIILGEPLNPIMGIGACFILVGVFLAN 287

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q8E8X4 SO_4527 "10 TMS drug/metabolite efflux pump (DME) family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 99 (39.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query:   121 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI 180
             L++P F WGT    +   L     ++VA +R +PAG+LL+        +LP+   AW  +
Sbjct:     7 LLAPVF-WGTTYALVSLYLQDMSPYWVAVWRALPAGVLLLMLRP----RLPT--LAWSKL 59

Query:   181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALL 225
              L A  +   F   L  G  R    +   +  + PL   +LA L+
Sbjct:    60 SLLAFCNIGAFFTLLFIGAYRLPGAVAGTLGATLPLIFLILAWLI 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93V85	WTR16_ARATH	No assigned EC number	0.7142	0.7814	0.7290	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	6e-20
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	2e-18
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-13
PRK11272	292	PRK11272, PRK11272, putative DMT superfamily trans	7e-13
pfam00892	126	pfam00892, EamA, EamA-like transporter family	6e-12
PRK11453	299	PRK11453, PRK11453, O-acetylserine/cysteine export	2e-07

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 88.8 bits (220), Expect = 6e-20
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 15/290 (5%)

Query: 110 MELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAF-RLIPAGLLLITFASSQGR 168
           M+  +LL    L+     WG + +A+K  +     F  AA  R + A LLL+     + R
Sbjct: 1   MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPR 60

Query: 169 KLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLF-G 227
            L      W+ + L AL+  +     L   L+ TSA + S+II   PL  A+LA LL  G
Sbjct: 61  GLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG 120

Query: 228 ESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT-------- 279
           E + L+   G++L + G+LL+          SL G      L AA   A+ T        
Sbjct: 121 ERLSLLQILGILLALAGVLLILLGGGGGGILSLLG--LLLALAAALLWALYTALVKRLSR 178

Query: 280 ---HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATK 336
                +   L L++  +L            + S   L LLY  +F + ++Y +++Y+   
Sbjct: 179 LGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRL 238

Query: 337 GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 386
              + ++ L+ L P+FA++ G L LGE  SP QL+GAA+ V+ + L + R
Sbjct: 239 LGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288

Length = 292

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 63/272 (23%), Positives = 107/272 (39%), Gaps = 34/272 (12%)

Query: 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD 187
           WGT  V + + L      + A FR +   LLL+        +        + + L   + 
Sbjct: 1   WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPL----LRRRPPLKRLLRLLLLGALQ 56

Query: 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247
              F       ++R   G  ++++   PL V +L+ L+  E    +     VLG+ G +L
Sbjct: 57  IGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVL 116

Query: 248 LEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT--------------------HMVIGGLP 287
           L      + N S+  +G    L +  S A+GT                     +++G L 
Sbjct: 117 L----LSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALL 172

Query: 288 LMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF 347
           L+  +             +  S    ALLY  + G+A++Y ++    T    +  S L  
Sbjct: 173 LLPFAWFL------GPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL 226

Query: 348 LTPMFASIFGFLYLGETFSPLQLVGAAVTVVA 379
             P+ A + G L LGET S  QL+G A+ + A
Sbjct: 227 AEPLVALLLGLLILGETLSLPQLIGGALIIAA 258

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS-GFNAWVSIFLFA 184
             W    V  K++L +       A+R + AG+LLI       +        A +++    
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLG 60

Query: 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIG 244
           L   +         L+  SA   SVI    P+   +L+ LL GE + L    G+VL ++G
Sbjct: 61  LFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLG 120

Query: 245 LLLL 248
           +LL+
Sbjct: 121 VLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 36/291 (12%)

Query: 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGF 174
           L  +  L + +  WG+  + ++  +       +A  R + AG+LL+ F   +G  LP+  
Sbjct: 7   LPLFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPT-L 65

Query: 175 NAWVSIFLFALVDASCFQGF--LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGL 232
             W++  L  L+  +   G   +A+  Q   +G+ +V++ + PL   +  + LFG     
Sbjct: 66  RQWLNAALIGLLLLAVGNGMVTVAEH-QNVPSGIAAVVVATVPL-FTLCFSRLFGIRTRK 123

Query: 233 VGAGGLVLGVIGLLLLEAPAFDESNSSLWGS--GEWWMLLAAQSMAVGT----------- 279
           +   G+ +G+ G++LL       S  +L G+  G   +L+A+ S A G+           
Sbjct: 124 LEWLGIAIGLAGIVLLN------SGGNLSGNPWGAILILIASASWAFGSVWSSRLPLPVG 177

Query: 280 ------HMVIGGLPLMVISVLNHDPVYGESVKEL-TSSDILALLYTSIFGSAISYGVYFY 332
                  M+  G+ L++ S+L+     GE +  L T S  LAL Y ++FGS I+   Y Y
Sbjct: 178 MMAGAAEMLAAGVVLLIASLLS-----GERLTALPTLSGFLALGYLAVFGSIIAISAYMY 232

Query: 333 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 383
                     +S  ++ P+ A + G    GET SP++ +   V V A+ LV
Sbjct: 233 LLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 275 MAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 334
                  +I G+ L+++  L       +    L+   ILALLY  +FG+A+ Y +YFY+ 
Sbjct: 21  TFTAYRFLIAGILLILLLFL-----LRKPFALLSLKAILALLYLGLFGTALGYLLYFYAL 75

Query: 335 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 385
              S +  S +T L+P+F  I   L LGE  +  QL+G  + ++ + L+  
Sbjct: 76  KYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|183142 PRK11453, PRK11453, O-acetylserine/cysteine export protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 24/204 (11%)

Query: 204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGS 263
           AGL S+++ +Q     VL A  FGE +      G+ L + G+L+L   + +  + ++   
Sbjct: 86  AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAM--L 143

Query: 264 GEWWMLLAAQSMAVGT---------------------HMVIGGLPLMVISVLNHDP-VYG 301
           G    L AA S A G                        +I  +P  V S++        
Sbjct: 144 GFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI 203

Query: 302 ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYL 361
            S+  +  + IL+L+Y +   + + YG++     +    +++ L+ L P+       L L
Sbjct: 204 HSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLL 263

Query: 362 GETFSPLQLVGAAVTVVAIYLVNF 385
            E  + LQ +GA + +  +Y+  F
Sbjct: 264 DERLTGLQFLGAVLIMAGLYINVF 287

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.98
PRK15430	296	putative chloramphenical resistance permease RarD;	99.97
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.95
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.94
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.93
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.91
COG2962	293	RarD Predicted permeases [General function predict	99.89
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.88
KOG2765	416	consensus Predicted membrane protein [Function unk	99.76
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.75
COG2510	140	Predicted membrane protein [Function unknown]	99.68
KOG2766	336	consensus Predicted membrane protein [Function unk	99.63
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.56
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.55
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.44
KOG1580	337	consensus UDP-galactose transporter related protei	99.44
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.4
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.39
COG2510	140	Predicted membrane protein [Function unknown]	99.35
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.31
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.29
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.27
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.24
PRK11272	292	putative DMT superfamily transporter inner membran	99.21
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.18
PRK11689	295	aromatic amino acid exporter; Provisional	99.15
PRK13499	345	rhamnose-proton symporter; Provisional	99.13
KOG1581	327	consensus UDP-galactose transporter related protei	99.12
PLN00411	358	nodulin MtN21 family protein; Provisional	99.11
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.08
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.03
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.02
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.0
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.9
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.87
PRK15430	296	putative chloramphenical resistance permease RarD;	98.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.81
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.81
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.8
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.66
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.66
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.65
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.65
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.62
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.53
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.52
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.52
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.47
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.42
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.41
KOG1582	367	consensus UDP-galactose transporter related protei	98.38
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.34
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.23
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	98.17
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.12
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.11
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.95
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.94
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.91
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.89
COG2962	293	RarD Predicted permeases [General function predict	97.88
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.82
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.77
COG2076	106	EmrE Membrane transporters of cations and cationic	97.75
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.74
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.73
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.66
COG2076	106	EmrE Membrane transporters of cations and cationic	97.61
PRK11431	105	multidrug efflux system protein; Provisional	97.57
PRK11431	105	multidrug efflux system protein; Provisional	97.56
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.53
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.45
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.29
KOG1581	327	consensus UDP-galactose transporter related protei	97.04
KOG2765	416	consensus Predicted membrane protein [Function unk	97.0
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.98
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.82
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.73
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.71
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.63
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.42
PRK13499	345	rhamnose-proton symporter; Provisional	96.35
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.28
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.77
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.32
KOG1580	337	consensus UDP-galactose transporter related protei	95.31
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.97
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.71
KOG4831	125	consensus Unnamed protein [Function unknown]	94.42
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.39
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.0
PRK02237	109	hypothetical protein; Provisional	92.92
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.66
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	91.93
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	91.9
PRK02237	109	hypothetical protein; Provisional	91.66
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.67
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.32
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	89.55
KOG1582	367	consensus UDP-galactose transporter related protei	89.35
KOG3912	372	consensus Predicted integral membrane protein [Gen	88.4
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	86.93
KOG1443	349	consensus Predicted integral membrane protein [Fun	85.8
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	85.17
COG1742	109	Uncharacterized conserved protein [Function unknow	80.18

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=3.2e-30  Score=242.73  Aligned_cols=260  Identities=26%  Similarity=0.444  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016434          118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQ  197 (389)
Q Consensus       118 ~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  197 (389)
                      .+.++...++||++++..|...++++|.+++++|+.++.++++++...++++. .+++++......|.++...++.++++
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999988877655443 34577888888888876777888899


Q ss_pred             Hh-hcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHH
Q 016434          198 GL-QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA  276 (389)
Q Consensus       198 al-~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a  276 (389)
                      +. ++++++.++++.++.|+++++++.+ +|||+++++++|++++++|+.++..++..    +....|++++++++++|+
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G~l~~l~a~~~~a  163 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWGAILILIASASWA  163 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHHHHHHHHHHHHHH
Confidence            99 9999999999999999999999985 69999999999999999999998754311    122359999999999999


Q ss_pred             HHH-----------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 016434          277 VGT-----------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL  339 (389)
Q Consensus       277 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a  339 (389)
                      .+.                 .+..++..+.+.....+...    ....+...|..+++.+++++++++.+|++++++.++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~  239 (292)
T PRK11272        164 FGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRP  239 (292)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            998                 33444455544443332211    122366788899999999999999999999999999


Q ss_pred             hHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          340 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       340 ~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++++.+.++||+++++++++++||++++.+++|+++|+.|+++.++.+
T Consensus       240 ~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        240 ALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=2.1e-30  Score=248.41  Aligned_cols=272  Identities=16%  Similarity=0.185  Sum_probs=217.3

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccC-cCHHHHHHHHHHHHHHHHHHHHHHhCC--CCC-CChhHHHHHHHHHHHHHH
Q 016434          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGR--KLP-SGFNAWVSIFLFALVDAS  189 (389)
Q Consensus       114 ~~~g~l~l~~a~~~~~~~~~~~k~~~~~-~~p~~~~~~R~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~g~~~~~  189 (389)
                      +.+.++.+++..+.++...++.|.+.+. ++|..+.++|+.++.++++++++.+++  +.+ ..++++.++.+.|+++ .
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence            4557889999999999999999988875 899999999999999999998876543  222 2467778888899988 6


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHH------cCCCCcHHHHHHHHHHHHHhHHhhccCCC---------
Q 016434          190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALL------FGESIGLVGAGGLVLGVIGLLLLEAPAFD---------  254 (389)
Q Consensus       190 ~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~------l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~---------  254 (389)
                      .++.+++++++++++++++++.++.|+++.++++++      ++||+++++++|++++++|+.++...+..         
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            677899999999999999999999999999999999      69999999999999999999998753211         


Q ss_pred             -----------CCCccchhhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhcCccccccc
Q 016434          255 -----------ESNSSLWGSGEWWMLLAAQSMAVGT-------------------HMVIGGLPLMVISVLNHDPVYGESV  304 (389)
Q Consensus       255 -----------~~~~~~~~~G~~~~l~aa~~~a~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~  304 (389)
                                 ..+..+...|+++.++++++|++|+                   .++.+++...+.....+........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence                       0111233559999999999999997                   1233333344444443332111111


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          305 KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       305 ~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      ...+... ..++|.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|++|+++..
T Consensus       250 ~~~~~~~-~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        250 IHFDITL-ITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             eccchHH-HHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            2234333 347777755 66899999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCC
Q 016434          385 FRGS  388 (389)
Q Consensus       385 ~~~~  388 (389)
                      +.++
T Consensus       328 ~~~~  331 (358)
T PLN00411        328 WGKA  331 (358)
T ss_pred             hhhh
Confidence            7654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=4.1e-30  Score=242.22  Aligned_cols=261  Identities=18%  Similarity=0.163  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016434          116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFL  195 (389)
Q Consensus       116 ~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  195 (389)
                      ++.++++++.++||.+++..|...++++|..+.++|+.++.++++++..  +++.   ++..++.++.+.++..+++.++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~---~~~~~~~~~~~~l~~~~~~~~~   78 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG--FPRL---RQFPKRYLLAGGLLFVSYEICL   78 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc--cccc---ccccHHHHHHHhHHHHHHHHHH
Confidence            4577899999999999999999999999999999999999998887631  1111   1222334455666667777777


Q ss_pred             HHHhh----cCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCC------CccchhhhH
Q 016434          196 AQGLQ----RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES------NSSLWGSGE  265 (389)
Q Consensus       196 ~~al~----~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~------~~~~~~~G~  265 (389)
                      +.+++    ++++.+++++.++.|+++++++++++|||+++++++|++++++|+.++..++.+.+      +......|+
T Consensus        79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~  158 (295)
T PRK11689         79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSY  158 (295)
T ss_pred             HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHH
Confidence            77775    46888899999999999999999999999999999999999999999987652111      111224599


Q ss_pred             HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 016434          266 WWMLLAAQSMAVGT---------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVY  330 (389)
Q Consensus       266 ~~~l~aa~~~a~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~  330 (389)
                      +++++++++|+.++               ....+++.+.+.....+.     .....+...|..+++.+ ++++++|.+|
T Consensus       159 ~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~l~~~~-~~t~~~~~l~  232 (295)
T PRK11689        159 GLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ-----PAMVFSLPAIIKLLLAA-AAMGFGYAAW  232 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC-----ccccCCHHHHHHHHHHH-HHHHHHHHHH
Confidence            99999999999998               122222333222222211     11235667788888888 6789999999


Q ss_pred             HHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          331 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       331 ~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++++|+.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+.+
T Consensus       233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            999999999999999999999999999999999999999999999999998776544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.98  E-value=1.8e-29  Score=238.35  Aligned_cols=261  Identities=23%  Similarity=0.340  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 016434          119 AVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQG  198 (389)
Q Consensus       119 l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  198 (389)
                      ++.++++++||+++++.|...++++|..+.++|+.++++.+++++.+  ++  .+   +...+..|++.....+.+++.+
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~--~~---~~~~~~~g~~~~~~~~~~~~~~   79 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVAR--PK--VP---LNLLLGYGLTISFGQFAFLFCA   79 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC--CC--Cc---hHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999988776665422  11  11   2234444555445566677889


Q ss_pred             hhc-CChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHH
Q 016434          199 LQR-TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAV  277 (389)
Q Consensus       199 l~~-~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~  277 (389)
                      +++ .+++.++++.++.|+++.+++++++|||++++++++++++++|+.++..++.++.  .....|++++++++++|+.
T Consensus        80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~~~~~G~~l~l~aal~~a~  157 (299)
T PRK11453         80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--HVAMLGFMLTLAAAFSWAC  157 (299)
T ss_pred             HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--chhHHHHHHHHHHHHHHHH
Confidence            998 5889999999999999999999999999999999999999999999986542221  2223599999999999999


Q ss_pred             HH---------------------HHHHHHHHHHHHHHhhcCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016434          278 GT---------------------HMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSAT  335 (389)
Q Consensus       278 ~~---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~  335 (389)
                      +.                     .+.++.+.........+.+.. ...+...+...|..++|+|+++++++|.+|+++++
T Consensus       158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~  237 (299)
T PRK11453        158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG  237 (299)
T ss_pred             HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98                     011111111112222222110 01123457788999999999999999999999999


Q ss_pred             cCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          336 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       336 ~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      +.++.+++.+.++||+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus       238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999875543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.97  E-value=1.7e-28  Score=231.28  Aligned_cols=259  Identities=16%  Similarity=0.108  Sum_probs=197.4

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CChhHHHHHHHHHHHH
Q 016434          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-----SGFNAWVSIFLFALVD  187 (389)
Q Consensus       113 ~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~  187 (389)
                      ++.+|.+++++++++||.++++.|.. ++++|.++.++|+.++.+++.+++..+++...     .+++++ .....+.++
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   82 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAVL   82 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHHH
Confidence            34578999999999999999999975 67999999999999999888777655432111     122332 334466777


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHH
Q 016434          188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWW  267 (389)
Q Consensus       188 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~  267 (389)
                      .+.++.++++|++++++++++++.++.|+++++++++++|||+++++|+|++++++|+.++..++.     +    ..++
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-----~----~~~~  153 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-----S----LPII  153 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-----C----ccHH
Confidence            788899999999999999999999999999999999999999999999999999999999886431     1    1246


Q ss_pred             HHHHHHHHHHHH------------HHHHHHHHHHHHHHhh----cCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016434          268 MLLAAQSMAVGT------------HMVIGGLPLMVISVLN----HDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF  331 (389)
Q Consensus       268 ~l~aa~~~a~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~  331 (389)
                      +++++++|+.|.            ..........+.....    ..+.. ......+...+..+++.| +.+.++|.+|+
T Consensus       154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~t~i~~~~~~  231 (296)
T PRK15430        154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSST-SHMGQNPMSLNLLLIAAG-IVTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCc-ccccCCcHHHHHHHHHHH-HHHHHHHHHHH
Confidence            888999999988            1122222122221111    11110 011111122334344445 46889999999


Q ss_pred             HHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          332 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       332 ~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      +++++.++++++++.+++|+++.+++++++||++++.+++|+++|+.|+.++.
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988877665

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.97  E-value=3.4e-28  Score=228.95  Aligned_cols=258  Identities=19%  Similarity=0.198  Sum_probs=208.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016434          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       113 ~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  192 (389)
                      ++.+++.+++++.++|+.++.+.|...++++|.++.++|++++.++++++...++.  +.++++++..+..|++. ...+
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~   85 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRL--RFAKEQRLPLLFYGVSL-GGMN   85 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhc--cCCHHHHHHHHHHHHHH-HHHH
Confidence            34678999999999999999999999999999999999999999998877644332  23457777788888875 5666


Q ss_pred             HHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHH
Q 016434          193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAA  272 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa  272 (389)
                      .++++++++++++.++++.++.|+++.+++    +||+..  ..++.++++|++++..++.+.++.  ...|++++++++
T Consensus        86 ~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~--~~~G~ll~l~aa  157 (293)
T PRK10532         86 YLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHV--DLTGAALALGAG  157 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccC--ChHHHHHHHHHH
Confidence            789999999999999999999999999887    366554  455678899999987554222222  235999999999


Q ss_pred             HHHHHHH-----------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016434          273 QSMAVGT-----------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT  335 (389)
Q Consensus       273 ~~~a~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~  335 (389)
                      ++|+.+.                 ..+++++.+.+.......      ....+...|..++++|++++.++|.+|+++++
T Consensus       158 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~  231 (293)
T PRK10532        158 ACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAG------EALWHWSILPLGLAVAILSTALPYSLEMIALT  231 (293)
T ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccC------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998                 233344444443333221      11235566777789999999999999999999


Q ss_pred             cCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          336 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       336 ~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      +.++++++.+.++||+++.+++++++||++++.+++|+++|++|++...+.+
T Consensus       232 ~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        232 RLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             hcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999987543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.97  E-value=9e-28  Score=222.32  Aligned_cols=238  Identities=27%  Similarity=0.371  Sum_probs=202.7

Q ss_pred             HHhHHHHHHHhcc-CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH
Q 016434          128 WGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL  206 (389)
Q Consensus       128 ~~~~~~~~k~~~~-~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~  206 (389)
                      ||.+++..|...+ ..|+.++.+.|+..+.+++.++...+     ++++++++.+..|.++..+++.++++|++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~   75 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE   75 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            8899999999876 47899999999999988888776544     34467778888999888999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH-------
Q 016434          207 GSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT-------  279 (389)
Q Consensus       207 a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------  279 (389)
                      ++++.++.|+++++++.+++|||+++++++|++++++|+.++..++ +   .+....|+.++++++++|+.+.       
T Consensus        76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~  151 (260)
T TIGR00950        76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-N---LSINPAGLLLGLGSGISFALGTVLYKRLV  151 (260)
T ss_pred             hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-c---ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999999999999999999987654 1   1233569999999999999999       


Q ss_pred             -------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhh
Q 016434          280 -------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLT  346 (389)
Q Consensus       280 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~  346 (389)
                                   .+..+.+.+.+.....++.      ...+...|..+++.+++++.++|.+|++++++.++++++.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~  225 (260)
T TIGR00950       152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN------PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA  225 (260)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence                         1334444444444333221      123567788889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 016434          347 FLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAI  380 (389)
Q Consensus       347 ~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~  380 (389)
                      +++|+++.+++++++||++++.+++|.++++.|+
T Consensus       226 ~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       226 LAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999886

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.95  E-value=1e-25  Score=210.89  Aligned_cols=257  Identities=19%  Similarity=0.226  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016434          118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ--GRKLPSGFNAWVSIFLFALVDASCFQGFL  195 (389)
Q Consensus       118 ~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  195 (389)
                      .++.++++++|+..+...|...++.++.  .++++....+++.++...+  +...+..+++++..++.+.++...++.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999666654443  4677777777777777654  23333334555656666666678888999


Q ss_pred             HHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHH
Q 016434          196 AQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSM  275 (389)
Q Consensus       196 ~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~  275 (389)
                      ++++++++++.++++.++.|+++++++++++|||+++++|+|+++++.|+.++..++.+.    ....|+.++++++++|
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----~~~~g~~~~l~aal~~  156 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----HRRKAYAWALAAALGT  156 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----cchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988654221    1234888999999999


Q ss_pred             HHHH------------------HHHHHHHHH-HHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016434          276 AVGT------------------HMVIGGLPL-MVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATK  336 (389)
Q Consensus       276 a~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~  336 (389)
                      +.|.                  ...++.+.. .+.........  ......+...+..+++.+.+++.++|.+|++++++
T Consensus       157 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~  234 (281)
T TIGR03340       157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRH--GRSMFPYARQILPSATLGGLMIGGAYALVLWAMTR  234 (281)
T ss_pred             HHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9987                  011111111 12211111000  00011123345566778889999999999999999


Q ss_pred             CChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 016434          337 GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  382 (389)
Q Consensus       337 ~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l  382 (389)
                      .++++++.+.+++|+++.+++++++||+++..+++|+++|+.|+++
T Consensus       235 ~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       235 LPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             CCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=3.6e-25  Score=212.88  Aligned_cols=262  Identities=14%  Similarity=0.122  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCC-C--ChhHHHHHHHHHHHHHHHHHHH
Q 016434          119 AVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLP-S--GFNAWVSIFLFALVDASCFQGF  194 (389)
Q Consensus       119 l~l~~a~~~~~~~~~~~k~~~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~g~~~~~~~~~~  194 (389)
                      ++.+.-..+-.......|.+++.++ |..++.+|++++.+++..++....++.+ .  .+++++..+..|+++... +..
T Consensus        52 ~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~  130 (350)
T PTZ00343         52 LLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFG  130 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH
Confidence            3333333333444578999999999 9999999999998876655443222211 2  235677888888888555 556


Q ss_pred             HHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHH
Q 016434          195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQS  274 (389)
Q Consensus       195 ~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~  274 (389)
                      .+.|+++++++.++++.+++|+++++++++++|||++++++++++++++|+.+....+     .+....|++++++++++
T Consensus       131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-----~~~~~~G~~~~l~s~~~  205 (350)
T PTZ00343        131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-----LHFTWLAFWCAMLSNLG  205 (350)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-----chhHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999988643     12224599999999999


Q ss_pred             HHHHH-------------------------HHHHHHHHHHHHHHhhcCccccccc----ccCCHHHHHHHHHHHHHHHHH
Q 016434          275 MAVGT-------------------------HMVIGGLPLMVISVLNHDPVYGESV----KELTSSDILALLYTSIFGSAI  325 (389)
Q Consensus       275 ~a~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~l  325 (389)
                      ++.++                         ...++.+.++|+....+.......+    ...+...+..+++ .++.+++
T Consensus       206 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l  284 (350)
T PTZ00343        206 SSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGV  284 (350)
T ss_pred             HHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHH
Confidence            99998                         1345666666666544432111000    0111112222333 3466788


Q ss_pred             HHHHHHH----HhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          326 SYGVYFY----SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       326 ~~~l~~~----al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++++++.    ++++.+|.+.++..+++|+++++++++++||++++.+++|++++++|++++++-|
T Consensus       285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            9999985    9999999999999999999999999999999999999999999999999998754

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.95  E-value=3.2e-29  Score=219.49  Aligned_cols=266  Identities=17%  Similarity=0.135  Sum_probs=209.1

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016434          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       113 ~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  192 (389)
                      +..+|.+++.++.++..++.+..|. . ..+|.++.-.|+++..++..|..++.+.....+.+.+.+++++|+.+.++.+
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~~-~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTKV-L-ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhhh-h-ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            3345677787785555555555553 3 4789999999999988888888888776664455677788899999866665


Q ss_pred             HHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCC------CC---CCccchhh
Q 016434          193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF------DE---SNSSLWGS  263 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~------~~---~~~~~~~~  263 (389)
                       +.|||++|++.++|++|.+++|+|+.+++|+++|||+++.+.++.++.+.||+++.+|..      ++   .+.+....
T Consensus       113 -lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~  191 (346)
T KOG4510|consen  113 -LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIP  191 (346)
T ss_pred             -HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCC
Confidence             779999999999999999999999999999999999999999999999999999999972      11   11122345


Q ss_pred             hHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHH
Q 016434          264 GEWWMLLAAQSMAVGT------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  325 (389)
Q Consensus       264 G~~~~l~aa~~~a~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l  325 (389)
                      |...++.++++.+-..                  ..+++.+..++.....+..     ..+..+.+|+.++.+|++ +.+
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~-----~lP~cgkdr~l~~~lGvf-gfi  265 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAV-----QLPHCGKDRWLFVNLGVF-GFI  265 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccce-----ecCccccceEEEEEehhh-hhH
Confidence            6666666665544333                  4455555555444444422     235567788888889954 566


Q ss_pred             HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++.+.++++|++.|..++++.+++.++|.++++++||+.|+++.|+|+++|+.+.++..+.|
T Consensus       266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999887644

>TIGR00688 rarD rarD protein

Probab=99.94  E-value=5.4e-25  Score=203.37  Aligned_cols=231  Identities=16%  Similarity=0.118  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCC------CC-CChhH-HHHHHHHHHHH
Q 016434          116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK------LP-SGFNA-WVSIFLFALVD  187 (389)
Q Consensus       116 ~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~------~~-~~~~~-~~~~~~~g~~~  187 (389)
                      +|++++++++++||+++++.|. ..+++|.++.++|++++.+++.+++..++++      .+ .++++ +....+.|++ 
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence            4788999999999999999998 4569999999999999998887766443321      11 11223 2334555555 


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHH
Q 016434          188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWW  267 (389)
Q Consensus       188 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~  267 (389)
                      ...++.++++|++++++++++++.++.|+++++++++++|||++++++++++++++|+.++..++.     +.    .++
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-----~~----~~~  150 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-----SL----PWE  150 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-----Cc----hHH
Confidence            578889999999999999999999999999999999999999999999999999999999876431     11    145


Q ss_pred             HHHHHHHHHHHH------------HHHHHHHHHHHHHHh---hcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016434          268 MLLAAQSMAVGT------------HMVIGGLPLMVISVL---NHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFY  332 (389)
Q Consensus       268 ~l~aa~~~a~~~------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~  332 (389)
                      +++++++|+.|.            ....+.....+....   ...+..  .........|..+++.|++ +.++|.++++
T Consensus       151 ~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~  227 (256)
T TIGR00688       151 ALVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFAT--VQQTNPFPIWLLLVLAGLI-TGTPLLAFVI  227 (256)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCc--ccccCchhHHHHHHHHHHH-HHHHHHHHHH
Confidence            788999999988            223333333333321   111110  0011122478888888865 8899999999


Q ss_pred             HhccCChhHHHhhhhhHHHHHHHHHHHH
Q 016434          333 SATKGSLTKLSSLTFLTPMFASIFGFLY  360 (389)
Q Consensus       333 al~~~~a~~~s~~~~~~pv~a~i~~~~~  360 (389)
                      ++++.++++++++.|+||+++.++++++
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.94  E-value=2.4e-24  Score=203.86  Aligned_cols=252  Identities=15%  Similarity=0.121  Sum_probs=192.1

Q ss_pred             HHHHHHHhccC-cCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 016434          131 AMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASS-QGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGS  208 (389)
Q Consensus       131 ~~~~~k~~~~~-~~p~~~~~~R~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~  208 (389)
                      ..+.+|.+.++ ..|..+++.|+.++.+...+.+.. .+++.+.++++++.++..|++. +.++.+.++++++++++.++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~   95 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTH   95 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHH
Confidence            33689999988 459999999999998876665322 2233445678899999999996 77889999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH---------
Q 016434          209 VIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT---------  279 (389)
Q Consensus       209 ~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~---------  279 (389)
                      ++.++.|+++++++++++|||++++++++++++++|+.+....+     .+....|++++++++++|+++.         
T Consensus        96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~  170 (302)
T TIGR00817        96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNITFVSRNIFSKKAMTI  170 (302)
T ss_pred             HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999998765322     1122359999999999999987         


Q ss_pred             -----------HHHHHHHHHHHHHHhhcCccccc-cccc----CCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHH
Q 016434          280 -----------HMVIGGLPLMVISVLNHDPVYGE-SVKE----LTS-SDILALLYTSIFGSAISYGVYFYSATKGSLTKL  342 (389)
Q Consensus       280 -----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~-~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~  342 (389)
                                 .+.++.+.+.+.....++..... ....    ... ..+...+..+..+....+.+++.++++.+|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~  250 (302)
T TIGR00817       171 KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTH  250 (302)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence                       34556666777665544322100 0000    011 112112222222222233455689999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          343 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       343 s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      ++..+++|+++++++++++||+++..+++|++++++|++++++.|+
T Consensus       251 sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       251 SVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             HHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999997553

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=1.7e-22  Score=189.33  Aligned_cols=272  Identities=30%  Similarity=0.421  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC-cCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG  193 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~-~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  193 (389)
                      ..+....++..+.|+......|...++ .++....+.|...+.+...+....++.......+.+++..+.+.++...++.
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFL   85 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHH
Confidence            456677888889999999999988887 6677777889999988844444333211222223355677777777888999


Q ss_pred             HHHHHhhcCChhHHHHHHhhHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHH
Q 016434          194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAA-LLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAA  272 (389)
Q Consensus       194 ~~~~al~~~~~~~a~~i~~~~Pv~~~lla~-l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa  272 (389)
                      +++.++++++++.++.+.++.|+++.++++ ++++||+++.+++++++++.|+.++..++......  ...|++++++++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~~~g~~~~l~a~  163 (292)
T COG0697          86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--SLLGLLLALAAA  163 (292)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--HHHHHHHHHHHH
Confidence            999999999999999999999999999997 77799999999999999999999999987333322  457999999999


Q ss_pred             HHHHHHH----------HHHHHH-HHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhH
Q 016434          273 QSMAVGT----------HMVIGG-LPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTK  341 (389)
Q Consensus       273 ~~~a~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~  341 (389)
                      ++++.+.          ...... ....................+.+...|..+.+.|++++++++.++++++++.++.+
T Consensus       164 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~  243 (292)
T COG0697         164 LLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL  243 (292)
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            9999887          000000 01000111100000000013456778888999999999899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          342 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       342 ~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      ++.+.+++|+++.+++++++||+++..+++|+++++.|+++..++++
T Consensus       244 ~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~  290 (292)
T COG0697         244 VALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR  290 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999987654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=1e-22  Score=191.48  Aligned_cols=263  Identities=17%  Similarity=0.134  Sum_probs=210.2

Q ss_pred             HHHHHHHHhHHHHHHHhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016434          122 VSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK---LPSGFNAWVSIFLFALVDASCFQGFLAQ  197 (389)
Q Consensus       122 ~~a~~~~~~~~~~~k~~~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~  197 (389)
                      +++.+.-+++.....+..++.+ |...+++.++.-.++..++..+++..   ....+++++++++.+++...++ .+.+.
T Consensus        20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN-~~~v~   98 (334)
T PF06027_consen   20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEAN-YLVVL   98 (334)
T ss_pred             HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHH-HHHHH
Confidence            4555555555555555555666 88999999988888887777666433   1234478889999999986555 58899


Q ss_pred             HhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCC----CCccchhhhHHHHHHHHH
Q 016434          198 GLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----SNSSLWGSGEWWMLLAAQ  273 (389)
Q Consensus       198 al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~----~~~~~~~~G~~~~l~aa~  273 (389)
                      |++||+.+.++++..+..+++++++++++|||+++.+++|++++++|++++...+...    ++.++...||++++++++
T Consensus        99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~  178 (334)
T PF06027_consen   99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAI  178 (334)
T ss_pred             HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887222    234466789999999999


Q ss_pred             HHHHHH------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016434          274 SMAVGT------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT  335 (389)
Q Consensus       274 ~~a~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~  335 (389)
                      +||+++                  ..+++.++..+...+.+.....  ...++.+.+..++..+ ++..+-|.+....++
T Consensus       179 lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~--~~~w~~~~~~~~v~~~-~~lf~~y~l~p~~l~  255 (334)
T PF06027_consen  179 LYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIE--SIHWTSQVIGLLVGYA-LCLFLFYSLVPIVLR  255 (334)
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhh--ccCCChhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            999999                  4456667776666666655442  2234555555444443 566778888889999


Q ss_pred             cCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          336 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       336 ~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      +.+|+...+-..+..+++++++++++|+.+++..++|.++|+.|.+++...++
T Consensus       256 ~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  256 MSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             hCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            99999999999999999999999999999999999999999999999987543

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.91  E-value=1.1e-21  Score=171.43  Aligned_cols=251  Identities=21%  Similarity=0.250  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      .++.++.+++.--....+.|.....+++...+.+|..+++++++.+.+..+++  ..++++...+.+|... ...|.+||
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsL-g~MNl~FY   89 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSL-GGMNLLFY   89 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHH-HHHHHHHH
Confidence            57788888888888889999999999999999999999999999988766543  4558889999999987 56667999


Q ss_pred             HHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHH
Q 016434          197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA  276 (389)
Q Consensus       197 ~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a  276 (389)
                      .+++++|.+.+..+.|+.|+.+++++      .-+.++.+-+.+++.|+.++.-.+.+.+..+  ..|..+++.++.||+
T Consensus        90 ~si~riPlGiAVAiEF~GPL~vA~~~------sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lD--p~Gv~~Al~AG~~Wa  161 (292)
T COG5006          90 LSIERIPLGIAVAIEFTGPLAVALLS------SRRLRDFVWVALAVLGIWLLLPLGQSVWSLD--PVGVALALGAGACWA  161 (292)
T ss_pred             HHHHhccchhhhhhhhccHHHHHHHh------ccchhhHHHHHHHHHHHHhheeccCCcCcCC--HHHHHHHHHHhHHHH
Confidence            99999999999999999999998876      3455666667788889888876543444444  459999999999999


Q ss_pred             HHH------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016434          277 VGT------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS  338 (389)
Q Consensus       277 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~  338 (389)
                      .|.                  .+.+++++.+|+......+.      -.++.....-+..+++++++.|.+.+.+++|.+
T Consensus       162 ~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp  235 (292)
T COG5006         162 LYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLP  235 (292)
T ss_pred             HHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchh------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence            999                  67777777777776544433      346667777778899999999999999999999


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          339 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       339 a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      +...+.+..+||.++.+.|++++||++++.||+|.+.|+++..-..
T Consensus       236 ~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         236 ARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999998877443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.89  E-value=1e-20  Score=169.78  Aligned_cols=260  Identities=17%  Similarity=0.160  Sum_probs=209.1

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCChhHHHHHHHHHHHHH
Q 016434          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-----PSGFNAWVSIFLFALVDA  188 (389)
Q Consensus       114 ~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~  188 (389)
                      ..+|+++.+.+-++||......|. .+..++.++...|.+.+..+++......|+..     .++++.+....+.+.+ .
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence            356899999999999999999995 67799999999999999998877766554432     2344556665655555 5


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHH
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWM  268 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~  268 (389)
                      ..++..|.+|..+..+-++++=++..|++.++++.+|+|||+++.|+++++++.+||.......   +  +    =-..+
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g--~----lpwva  153 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---G--S----LPWVA  153 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---C--C----CcHHH
Confidence            8999999999999999999999999999999999999999999999999999999999988643   1  1    12455


Q ss_pred             HHHHHHHHHHH------------HHHHHHHHHHHHHHhhcCcccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016434          269 LLAAQSMAVGT------------HMVIGGLPLMVISVLNHDPVYGES--VKELTSSDILALLYTSIFGSAISYGVYFYSA  334 (389)
Q Consensus       269 l~aa~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al  334 (389)
                      +.-++.|+.|.            .+.+-...+.|.++...-......  ....+...+..++..| ..|+++..++..+-
T Consensus       154 l~la~sf~~Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG-~vTavpL~lf~~aa  232 (293)
T COG2962         154 LALALSFGLYGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAG-LVTAVPLLLFAAAA  232 (293)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhh-HHHHHHHHHHHHHH
Confidence            66778888888            444445555555443221110001  1223566677777788 66888999999999


Q ss_pred             ccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          335 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       335 ~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      |+.+-+..+.++|.+|..-.+++++++||+++..+++..++|..|++++..
T Consensus       233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.88  E-value=4.9e-20  Score=172.90  Aligned_cols=257  Identities=18%  Similarity=0.173  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      ++++.++++++||+..+..|... +.++.++.  |..++.+++..+....+.+....++.+...++.|.+ ...++.+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~-w~ig~~~~~   77 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAF-WALGQINQF   77 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHH-HHhhhhhHH
Confidence            46788999999999999999766 66666664  777777776655444433222223444445555555 477778999


Q ss_pred             HHhhcCChhHHHHHHh-hHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHHhHHhhccCCCCCC-c--cchhhhHHHH
Q 016434          197 QGLQRTSAGLGSVIID-SQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAFDESN-S--SLWGSGEWWM  268 (389)
Q Consensus       197 ~al~~~~~~~a~~i~~-~~Pv~~~lla~l~l~Er~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~-~--~~~~~G~~~~  268 (389)
                      .+.++++++.+..+.. +.++++.+++.+++|||.++.+    ++|++++++|+.++...+.+... .  ....+|..++
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~  157 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL  157 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence            9999999999999977 8999999999999999999999    99999999999998775422111 0  2236799999


Q ss_pred             HHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 016434          269 LLAAQSMAVGT-------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGV  329 (389)
Q Consensus       269 l~aa~~~a~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l  329 (389)
                      ++++++|+.|.                   .+++++.......  ...       .+...+.+...+..|++ ..+++.+
T Consensus       158 l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGH--ILA-------KPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHH--hcc-------cchHHHHHHHHHHHHHH-HHHHHHH
Confidence            99999999988                   1122222222111  000       11233333334447866 7999999


Q ss_pred             HHHHhc-cCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccC
Q 016434          330 YFYSAT-KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       330 ~~~al~-~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~----~G~~lIi~g~~l~~~~~  387 (389)
                      |..+.+ +.+++.+..+.+.||+.+.+++++++||..++.++    +|.++|+.|+.+....|
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~  290 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK  290 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence            999999 99999999999999999999999999999999999    99999999999987654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.76  E-value=2.3e-17  Score=152.09  Aligned_cols=275  Identities=17%  Similarity=0.134  Sum_probs=208.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhHHHHHHHhccCcC---HHHHHHHHHHHHHHHHHHHH------HHh-CC------------
Q 016434          111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFA------SSQ-GR------------  168 (389)
Q Consensus       111 ~~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~---p~~~~~~R~~~~~l~~~~~~------~~~-~~------------  168 (389)
                      ..+...|+.++++..++|-...-+++...++.+   |+.+++.....-.+.+.++.      +.. ++            
T Consensus         9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~   88 (416)
T KOG2765|consen    9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA   88 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence            345678999999999999999999998887644   88887776555555444422      100 00            


Q ss_pred             -------------------------------------------------CCCCChh------------HHHHH-HHHHHH
Q 016434          169 -------------------------------------------------KLPSGFN------------AWVSI-FLFALV  186 (389)
Q Consensus       169 -------------------------------------------------~~~~~~~------------~~~~~-~~~g~~  186 (389)
                                                                       +.+.+.|            +..++ +....+
T Consensus        89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l  168 (416)
T KOG2765|consen   89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL  168 (416)
T ss_pred             hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence                                                             0000111            22333 334444


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCC---CCCCccchhh
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF---DESNSSLWGS  263 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~---~~~~~~~~~~  263 (389)
                      . +..+..+..|+++++++..+++..+.-+|+.+++.++.+||+++.+.++++++++||+++...+.   +.........
T Consensus       169 W-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll  247 (416)
T KOG2765|consen  169 W-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL  247 (416)
T ss_pred             H-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence            4 66677999999999999999999999999999999999999999999999999999999998762   2223344567


Q ss_pred             hHHHHHHHHHHHHHHH----------------HHHHHH------HHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHH
Q 016434          264 GEWWMLLAAQSMAVGT----------------HMVIGG------LPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF  321 (389)
Q Consensus       264 G~~~~l~aa~~~a~~~----------------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  321 (389)
                      |+++++++|+.||+|.                .+++|.      +++.|..++..... .+.+..++..+...++..+++
T Consensus       248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~~q~~~vv~~~li  326 (416)
T KOG2765|consen  248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSSTQFSLVVFNNLI  326 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCCceeEeeeHhhHH
Confidence            9999999999999999                333333      22232222222211 123334455666667778889


Q ss_pred             HHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          322 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       322 ~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      +++++-++|.+|.-..++..+.+.+.++.+++++.+.++-|..+++.+++|.+.|.+|.+++++..
T Consensus       327 gtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  327 GTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            999999999999999999999999999999999999999999999999999999999999998754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.75  E-value=2.1e-15  Score=142.72  Aligned_cols=243  Identities=18%  Similarity=0.159  Sum_probs=188.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHH
Q 016434          143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA  222 (389)
Q Consensus       143 ~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla  222 (389)
                      .|..+++.++....+...+.....+. .+.++..++.++..+++. .++..+.+.|++|++...-.++....|+++++++
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~  108 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKF-PKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMILG  108 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccc-cCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence            38999999999999888777766552 223335566677777776 6666799999999999999999999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCc-----cchhhhHHHHHHHHHHHHHHH------------------
Q 016434          223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNS-----SLWGSGEWWMLLAAQSMAVGT------------------  279 (389)
Q Consensus       223 ~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~-----~~~~~G~~~~l~aa~~~a~~~------------------  279 (389)
                      .+++|+|+++.+++++++..+|+.+....+...+..     .....|+.+.+++.++.+...                  
T Consensus       109 ~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~m  188 (303)
T PF08449_consen  109 VLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELM  188 (303)
T ss_pred             HHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            999999999999999999999999999876222111     112339999999999999888                  


Q ss_pred             --HHHHHHHHHHHHHHh--hcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHH
Q 016434          280 --HMVIGGLPLMVISVL--NHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASI  355 (389)
Q Consensus       280 --~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i  355 (389)
                        ...++.+...+....  .++..........++..+..++... ++..+++...+...++.++...+++..+.-+++++
T Consensus       189 fy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sil  267 (303)
T PF08449_consen  189 FYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSIL  267 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Confidence              233444444444444  2222111122233455555555555 66777888888899999999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          356 FGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       356 ~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      ++++++|+++++.+|+|.++++.|..++.+.|+
T Consensus       268 lS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  268 LSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             HHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            999999999999999999999999999987654

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.68  E-value=3.7e-16  Score=122.81  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVDASCFQG  193 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~  193 (389)
                      ..++.++++++++...++.|...+++||...+++|.++...++..++...++....   +.|.|..+++.|+.+ ..++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHH
Confidence            46788999999999999999999999999999999999999999998888765544   668888888888665 88889


Q ss_pred             HHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       194 ~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      +||+|++...++....+..++|+++++++++++|||++..+|+|++++.+|++++..
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999998764

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.63  E-value=5.8e-17  Score=141.84  Aligned_cols=256  Identities=15%  Similarity=0.128  Sum_probs=204.9

Q ss_pred             HHHHHHHHhHHHHHHHhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016434          122 VSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQ  200 (389)
Q Consensus       122 ~~a~~~~~~~~~~~k~~~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~  200 (389)
                      +++.++-+.++.....+.++.+ |...+|..+..-+++..+++.+|++..   ...|..+++++++...+++ +...|+|
T Consensus        25 iLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~---~~~~~hYilla~~DVEaNy-~vV~AyQ  100 (336)
T KOG2766|consen   25 ILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI---KAKWRHYILLAFVDVEANY-FVVKAYQ  100 (336)
T ss_pred             HHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH---HHHHHHhhheeEEeecccE-EEeeehh
Confidence            6777778888887777777777 999999999999999999998887333   2455668899999877665 7789999


Q ss_pred             cCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC---CCCCCccchhhhHHHHHHHHHHHHH
Q 016434          201 RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA---FDESNSSLWGSGEWWMLLAAQSMAV  277 (389)
Q Consensus       201 ~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~---~~~~~~~~~~~G~~~~l~aa~~~a~  277 (389)
                      |++...+.++-......+.+++|+++|.|+++.++.|+++|++||+++...+   .+....+...+||.+.+++|.+||+
T Consensus       101 yTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaV  180 (336)
T KOG2766|consen  101 YTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAV  180 (336)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeee
Confidence            9999999999888888899999999999999999999999999999999877   2223345667899999999999999


Q ss_pred             HH------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 016434          278 GT------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL  339 (389)
Q Consensus       278 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a  339 (389)
                      .+                  ..++|+++..+. ++.+....  ...+++.+...++.  ..++..+-|.+...-+|.-++
T Consensus       181 SNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~--~tl~w~~~i~~yl~--f~L~MFllYsl~pil~k~~~a  255 (336)
T KOG2766|consen  181 SNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHV--STLHWDSAIFLYLR--FALTMFLLYSLAPILIKTNSA  255 (336)
T ss_pred             ccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hhhhccce--eeEeehHHHHHHHH--HHHHHHHHHHhhHHheecCCc
Confidence            98                  446666666665 44444332  22334433333333  336666677777888999999


Q ss_pred             hHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          340 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       340 ~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      +...+-..+.-.|+.++  ..||.+.+|...+..+.+..|.+++.-+++
T Consensus       256 T~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  256 TMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             eEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            99999999999999998  678999999999999999999999876553

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.56  E-value=1.1e-14  Score=135.64  Aligned_cols=248  Identities=14%  Similarity=0.093  Sum_probs=188.3

Q ss_pred             HHHHHhcc--CcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 016434          133 VAMKEVLP--KAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS--GFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLG  207 (389)
Q Consensus       133 ~~~k~~~~--~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a  207 (389)
                      ...|..++  +++ |..++.++...+.+.++.....+..+.+.  ++..+..++-.|++. +++..+-+.++.+.+++..
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~  112 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFY  112 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHH
Confidence            56888888  666 99999998888888877776665444332  335666777777775 6677788999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH--------
Q 016434          208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT--------  279 (389)
Q Consensus       208 ~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~--------  279 (389)
                      +++..+.|+++.++++++.+|+.+...+..++....||.+....+     .+....|.+.++.+.+..+..+        
T Consensus       113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-----~~fn~~G~i~a~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-----LSFNLFGFISAMISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-----ccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999998754     2233459999999999998888        


Q ss_pred             --------------HHHHHHHHHH-HHHHhhcCcccc-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 016434          280 --------------HMVIGGLPLM-VISVLNHDPVYG-ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS  343 (389)
Q Consensus       280 --------------~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s  343 (389)
                                    ..-+..+.++ |+....++.... .....++...+. .++.. ++...-....+..+.+.+|.+.+
T Consensus       188 ~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s-v~~f~~Nls~f~~ig~tSalT~~  265 (316)
T KOG1441|consen  188 SKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-LLLNS-VLAFLLNLSAFLVIGRTSALTYS  265 (316)
T ss_pred             ccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-HHHHH-HHHHHHHHHHHHHHcccCchhhh
Confidence                          1123334444 554444443320 001122333222 22222 34444445557789999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          344 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       344 ~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      +...+.-++.++.++++|+++.++.+..|.++.++|+++|++.|.
T Consensus       266 V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~  310 (316)
T KOG1441|consen  266 VAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL  310 (316)
T ss_pred             hhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999997654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.55  E-value=6e-14  Score=114.45  Aligned_cols=123  Identities=24%  Similarity=0.383  Sum_probs=109.1

Q ss_pred             HHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016434          126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK--LPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTS  203 (389)
Q Consensus       126 ~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~  203 (389)
                      ++||...++.|...++.||...+++|+..+.+ ++++....+++  ...+++++...+..+.++...++.++++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            47999999999999999999999999999997 55544444332  4566688888888899877889999999999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       204 ~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      ++.++++..++|+++.+++++++||++++.+++|++++++|+.++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.44  E-value=4.8e-10  Score=104.14  Aligned_cols=266  Identities=13%  Similarity=0.065  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccC----cCHHHHHHHHHHHHHHHHHHHHHHhCCC----C--------CCChhHHHH
Q 016434          116 LEWAVLVSPFFFWGTAMVAMKEVLPK----AGTFFVAAFRLIPAGLLLITFASSQGRK----L--------PSGFNAWVS  179 (389)
Q Consensus       116 ~g~l~l~~a~~~~~~~~~~~k~~~~~----~~p~~~~~~R~~~~~l~~~~~~~~~~~~----~--------~~~~~~~~~  179 (389)
                      ...+.++...+.++...+..|+..+.    +.|...++.-=++-.++....++...+.    .        ...+++..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            45677788888899999888876553    5577777777777777666666555211    1        123456778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCC----
Q 016434          180 IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----  255 (389)
Q Consensus       180 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~----  255 (389)
                      ..+.+++. ++.+-++|.++.+.+++.-++...+-.+.++++..+++++|.++.||.++++.+.|+.++-.+..++    
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~  173 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK  173 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            88888887 6666799999999999999999999999999999999999999999999999999999999444111    


Q ss_pred             --CCccchhhhHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCccc--ccccccCCHHH
Q 016434          256 --SNSSLWGSGEWWMLLAAQSMAVGT--------------------HMVIGGLPLMVISVLNHDPVY--GESVKELTSSD  311 (389)
Q Consensus       256 --~~~~~~~~G~~~~l~aa~~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  311 (389)
                        ........|....+.+....+...                    ..++|.+..+......+....  ...+..++...
T Consensus       174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v  253 (345)
T KOG2234|consen  174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV  253 (345)
T ss_pred             CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence              112234457777777776665554                    334444444444433332221  22344556777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          312 ILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       312 ~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      |..++..++-+-.+     ..-+|+.+-..-+-...+..+++.+.++.++|-+|+....+|..+|+.++.++...+
T Consensus       254 w~vVl~~a~gGLlv-----s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P  324 (345)
T KOG2234|consen  254 WLVVLLNAVGGLLV-----SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP  324 (345)
T ss_pred             HHHHHHHhccchhH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence            77666665433333     334577787777888888999999999999999999999999999999999998543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.1e-12  Score=112.20  Aligned_cols=237  Identities=12%  Similarity=0.037  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHH
Q 016434          144 TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAA  223 (389)
Q Consensus       144 p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~  223 (389)
                      ...++++++....++.-.+...+++ ...++..-+.+...++-. -+.+...+.|++++|--...+-...-|+=+++++.
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~~-~~~D~t~~~~YaAcs~sY-LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGV  130 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRKK-TEIDNTPTKMYAACSASY-LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGV  130 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeccc-ccccCCcchHHHHHHHHH-HHHHHhccchhcccCCcHHHhcccCCCcceeeeeh
Confidence            4556666666666655333333221 222222222333333322 44455668899999999999999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHHHHHhHHhhccC--CCCCCccchhhhHHHHHHHHHHHHHHH--------------------HH
Q 016434          224 LLFGESIGLVGAGGLVLGVIGLLLLEAPA--FDESNSSLWGSGEWWMLLAAQSMAVGT--------------------HM  281 (389)
Q Consensus       224 l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~--~~~~~~~~~~~G~~~~l~aa~~~a~~~--------------------~~  281 (389)
                      ++.+++++|++...++++++||++....+  ..+......+.|.++.+++-..-+...                    ..
T Consensus       131 l~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~N  210 (337)
T KOG1580|consen  131 LFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTN  210 (337)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHH
Confidence            99999999999999999999999999986  233334456789999998877655544                    33


Q ss_pred             HHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHh
Q 016434          282 VIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYL  361 (389)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~  361 (389)
                      +++.+.+....++.++-.-...+..-.+..|+-+..++ +++++++++.++-....+|-..+++..+.-.|+++.++++|
T Consensus       211 lwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~a-i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf  289 (337)
T KOG1580|consen  211 LWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLA-IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLF  289 (337)
T ss_pred             HHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHH-HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHh
Confidence            45555554444444332211122334566676677777 78999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 016434          362 GETFSPLQLVGAAVTVVAIYLV  383 (389)
Q Consensus       362 ge~~~~~~~~G~~lIi~g~~l~  383 (389)
                      +.+++..||+|.+++..+...=
T Consensus       290 ~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  290 NNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             cCcCcHHHHHHHHHHHHHhhhH
Confidence            9999999999999999987653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.40  E-value=1.8e-11  Score=113.21  Aligned_cols=131  Identities=19%  Similarity=0.262  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGT--FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p--~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  192 (389)
                      ..|.++.++++++|+...+..|...++.++  .....+++.++.+++.++....+++...+.+++...+..+.++...++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999998877774  455557899999998888776655444556777778888988888899


Q ss_pred             HHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Q 016434          193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGL  245 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv  245 (389)
                      .++++++++.+++.++.+.++.|+++++++++++||+++..+++|+++.+.|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999986

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.39  E-value=6.7e-11  Score=107.83  Aligned_cols=199  Identities=16%  Similarity=0.071  Sum_probs=149.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      ..+++.+++.+.+++. .+.+.+.++++++++++.-+++..+..+++++++++++|+|++++||.++++.++|+.++..+
T Consensus        12 ~~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~   90 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS   90 (244)
T ss_pred             HhHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence            4568888999999998 666679999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCC----CC--------ccchhhhHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCcc
Q 016434          252 AFDE----SN--------SSLWGSGEWWMLLAAQSMAVGT--------------------HMVIGGLPLMVISVLNHDPV  299 (389)
Q Consensus       252 ~~~~----~~--------~~~~~~G~~~~l~aa~~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~  299 (389)
                      +...    ++        ......|.++.++++++.+...                    ..+++.++.++...+.+...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~  170 (244)
T PF04142_consen   91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSA  170 (244)
T ss_pred             CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            6322    10        1234579988998888777766                    33444444444433332221


Q ss_pred             cc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016434          300 YG--ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVT  376 (389)
Q Consensus       300 ~~--~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lI  376 (389)
                      ..  ..+...+...|..++..+     ++=.+....+|+.+...=+.....+.+++.+.++++||.+++....+|+++|
T Consensus       171 ~~~~g~f~G~~~~~~~~i~~~a-----~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  171 ISESGFFHGYSWWVWIVIFLQA-----IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cccCCchhhcchHHHHHHHHHH-----HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            11  112233444454433333     2333345567999999999999999999999999999999999999998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.35  E-value=5.8e-12  Score=99.33  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHH
Q 016434          264 GEWWMLLAAQSMAVGT------------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  325 (389)
Q Consensus       264 G~~~~l~aa~~~a~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l  325 (389)
                      ...+++++|+++++..                  ..+...+.+..+....+...   .....+++.|..++.-| +.+++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~---~~~~~~~k~~lflilSG-la~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQ---AGGEIGPKSWLFLILSG-LAGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCcee---cccccCcceehhhhHHH-HHHHH
Confidence            5678888888888777                  22333333444444443332   12235788899888888 78899


Q ss_pred             HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      +..+|++|++..+++++.++.-+.|+++.+++++++||+++..+++|+++|++|.+++.+
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999999988765

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.31  E-value=2.3e-11  Score=97.74  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHH
Q 016434          149 AFRLIPAGLLLITFASSQGRKLP----SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAAL  224 (389)
Q Consensus       149 ~~R~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l  224 (389)
                      .+|++.+.+++..+...+++...    .+.+.+.+.+..|.++...++.++++|+++.+ +.++.+.+++|+++++++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            57999999988888777554211    12355566677788876688999999999999 58999999999999999999


Q ss_pred             HcCCCCcHHHHHHHHHHHHHhHHhhccCCC
Q 016434          225 LFGESIGLVGAGGLVLGVIGLLLLEAPAFD  254 (389)
Q Consensus       225 ~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~  254 (389)
                      ++|||++++++.+++++++|+.++..++.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999987743

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.29  E-value=2.2e-10  Score=107.97  Aligned_cols=137  Identities=14%  Similarity=0.104  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF  194 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  194 (389)
                      ..|.++.++++++|+.+.+..|...++.++..... ...++.+++.++..........+...+...+..|+++..+++.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAI-GSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH-HHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998887788877654 44666666666665544322334455555678899999999999


Q ss_pred             HHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       195 ~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++++++.++++++++.+++|++..+++++++||+++..+++|.+++++|+.......
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999987654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.27  E-value=1.5e-09  Score=98.89  Aligned_cols=228  Identities=18%  Similarity=0.150  Sum_probs=167.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHH
Q 016434          142 AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAV  220 (389)
Q Consensus       142 ~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~l  220 (389)
                      -+|.+..+.-.+.+.++.+......+.....+.+.+...++.|++. ..++.+++.++++..++.+..+ ..++-+.+.+
T Consensus        10 G~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl   88 (269)
T PF06800_consen   10 GKPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSL   88 (269)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHH
Confidence            4577777776666666666666555544433347777777777776 7788899999999999999999 6788888999


Q ss_pred             HHHHHcCCCCcHHHH----HHHHHHHHHhHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHH--------------
Q 016434          221 LAALLFGESIGLVGA----GGLVLGVIGLLLLEAPAFDES---NSSLWGSGEWWMLLAAQSMAVGT--------------  279 (389)
Q Consensus       221 la~l~l~Er~~~~~~----~g~~l~~~Gv~ll~~~~~~~~---~~~~~~~G~~~~l~aa~~~a~~~--------------  279 (389)
                      .+.++++|.-+..++    +++++.++|+++....+.+++   +.....+|....+++.+.|..|.              
T Consensus        89 ~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~  168 (269)
T PF06800_consen   89 IGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAF  168 (269)
T ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhH
Confidence            999999998776654    488999999999998874333   23456779999999999999998              


Q ss_pred             -----HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHH
Q 016434          280 -----HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFAS  354 (389)
Q Consensus       280 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~  354 (389)
                           .+++++++.....   ...       ..+...|. -+..| +.-.++-.++..+.++.+.+..=.+..+.++++.
T Consensus       169 lPqaiGm~i~a~i~~~~~---~~~-------~~~k~~~~-nil~G-~~w~ignl~~~is~~~~G~a~af~lSQ~~vvISt  236 (269)
T PF06800_consen  169 LPQAIGMLIGAFIFNLFS---KKP-------FFEKKSWK-NILTG-LIWGIGNLFYLISAQKNGVATAFTLSQLGVVIST  236 (269)
T ss_pred             HHHHHHHHHHHHHHhhcc---ccc-------ccccchHH-hhHHH-HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHH
Confidence                 2333333322221   111       11222332 23345 4455678888899999999999999999999999


Q ss_pred             HHHHHHhCCCCCHH----HHHHHHHHHHHHHH
Q 016434          355 IFGFLYLGETFSPL----QLVGAAVTVVAIYL  382 (389)
Q Consensus       355 i~~~~~~ge~~~~~----~~~G~~lIi~g~~l  382 (389)
                      +.+++++||.=+..    .++|.++|+.|.++
T Consensus       237 lgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  237 LGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999987755    46788888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.24  E-value=1.5e-09  Score=98.33  Aligned_cols=240  Identities=14%  Similarity=0.104  Sum_probs=176.3

Q ss_pred             ccCcC-HHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 016434          139 LPKAG-TFFVAAFRLIPAGLLLITFASSQGR-----KLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIID  212 (389)
Q Consensus       139 ~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~  212 (389)
                      .++++ |..++-+++++-.++........+.     +.+..|++..+-+....+..++...+-+++++|++.+.-++...
T Consensus        39 ~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KS  118 (349)
T KOG1443|consen   39 TKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKS  118 (349)
T ss_pred             hcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccc
Confidence            34577 9999999988887776554433322     22446666665555555566888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH-------------
Q 016434          213 SQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT-------------  279 (389)
Q Consensus       213 ~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------------  279 (389)
                      ..++|+.+++.+|--||.++.-..-++++.+|+.+....+.     +....|..+.+.+.++.++..             
T Consensus       119 Ssi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-----qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~  193 (349)
T KOG1443|consen  119 SSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-----QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA  193 (349)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-----ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999998762     233448888888888777665             


Q ss_pred             ----------HHHHHHHHHHHHHHhhcCcccc---cccccCCH-HHHHHHHHHHHHHHHHHHHHH---HHHhccCChhHH
Q 016434          280 ----------HMVIGGLPLMVISVLNHDPVYG---ESVKELTS-SDILALLYTSIFGSAISYGVY---FYSATKGSLTKL  342 (389)
Q Consensus       280 ----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~l~~~g~~~~~l~~~l~---~~al~~~~a~~~  342 (389)
                                ..-+..+.+++..+.++++...   ..+...+. ..+..+..++ ++..+++.+.   +.-+.+.+....
T Consensus       194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~-l~g~laF~l~~sEflLl~~Ts~ltl  272 (349)
T KOG1443|consen  194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS-LGGLLAFLLEFSEFLLLSRTSSLTL  272 (349)
T ss_pred             cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH-HHHHHHHHHHHHHHheeeeccceee
Confidence                      2223345556666666665431   11122222 2233333333 3444455443   445778888899


Q ss_pred             HhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          343 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       343 s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      ++.....-+...+++.++.++.++...|+|.++.+.|+.+..
T Consensus       273 SIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~  314 (349)
T KOG1443|consen  273 SIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR  314 (349)
T ss_pred             eHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999883

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.21  E-value=8.3e-10  Score=103.99  Aligned_cols=137  Identities=14%  Similarity=0.144  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCChhHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL--PSGFNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~  192 (389)
                      ..|.++.++++++|+......|...+. ++...+.+++.++.+.+.++........  ..+.+.+...+..++++....+
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999976543 4556677888888888877766544322  2345778888888998888999


Q ss_pred             HHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      .++++++++.++++++.+.+++|++.++++++++||+++..+++|.++++.|+.++...+
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987643

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.7e-08  Score=91.34  Aligned_cols=253  Identities=16%  Similarity=0.145  Sum_probs=182.5

Q ss_pred             HHhHHHHHHHhccCcC-HHHHHH--HHHHHHHHHHHHHHHHhCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016434          128 WGTAMVAMKEVLPKAG-TFFVAA--FRLIPAGLLLITFASSQGRKL-PSGFNAWVSIFLFALVDASCFQGFLAQGLQRTS  203 (389)
Q Consensus       128 ~~~~~~~~k~~~~~~~-p~~~~~--~R~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~  203 (389)
                      --.+.+..|.+....+ |..+..  .|++...+.+...-..+-.+. +.+++..++++-..++. .++...-..+++|.+
T Consensus        24 S~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~ln  102 (314)
T KOG1444|consen   24 SILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLN  102 (314)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH-HHHHHHccccccccC
Confidence            3345577888887766 665555  888877776655443333232 34566666666666665 445556678999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH----
Q 016434          204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT----  279 (389)
Q Consensus       204 ~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~----  279 (389)
                      +..-+++...+|+++++....++|.|++...|.++....+|......++..-     ...|+.+++...+.-+.+.    
T Consensus       103 Vpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf-----~~~gY~w~~~n~~~~a~~~v~~k  177 (314)
T KOG1444|consen  103 VPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF-----NLRGYSWALANCLTTAAFVVYVK  177 (314)
T ss_pred             chHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-----cchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888776222     2238888888888777766    


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCcc-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhH
Q 016434          280 ----------------HMVIGGLPLMVISVLNHDPV-YGESV-KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTK  341 (389)
Q Consensus       280 ----------------~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~  341 (389)
                                      -.++...++.....+.++.. ..... ...+...+..+..-|+.+.++.|.. ..+.+..++..
T Consensus       178 k~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s-~~ct~~~SAtT  256 (314)
T KOG1444|consen  178 KSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTS-FLCTRVNSATT  256 (314)
T ss_pred             HhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhhccccc
Confidence                            23334444444444444422 11111 1234566777777777777776665 56777778888


Q ss_pred             HHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          342 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       342 ~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      .+++.........+.+.+++|++.++...+|..+-+.|.++|+..+
T Consensus       257 ~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  257 TTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             eeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            8888877777788888888899999999999999999999988643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.15  E-value=1.9e-09  Score=101.75  Aligned_cols=134  Identities=16%  Similarity=0.111  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQG  193 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~  193 (389)
                      ..|.+++++++++|+.+.+..|...++.++.....   ....+.+.+.....+. ....+...+..++..++ ...+.+.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~  230 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAA-AMGFGYA  230 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH-HHHHHHH
Confidence            45889999999999999999998877777765432   2233333332222322 22344456666666664 5678889


Q ss_pred             HHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       194 ~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      ++++++++.+++.++.+.+++|++.++++++++||+++..+++|.++++.|+.+....+
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999998887644

>PRK13499 rhamnose-proton symporter; Provisional

Probab=99.13  E-value=1.5e-07  Score=89.27  Aligned_cols=271  Identities=13%  Similarity=0.057  Sum_probs=175.0

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHH-HHHHHHHHHH---HHHHHhC--CC-CCCChhHHHHHHHHHH
Q 016434          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAF-RLIPAGLLLI---TFASSQG--RK-LPSGFNAWVSIFLFAL  185 (389)
Q Consensus       113 ~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~-R~~~~~l~~~---~~~~~~~--~~-~~~~~~~~~~~~~~g~  185 (389)
                      +...|++..+++.++||+.++-.|. .+..+ +|.... -.+++.++..   .....+.  .. ...+.+.+...++.|+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            3467899999999999999999997 44333 222211 1112222111   1111100  00 1234566777777777


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHhHHhhc----cCC
Q 016434          186 VDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESI-------GLVGAGGLVLGVIGLLLLEA----PAF  253 (389)
Q Consensus       186 ~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~-------~~~~~~g~~l~~~Gv~ll~~----~~~  253 (389)
                      +. ..++..++.++++..++.+..| ..++-++..++..++++|-.       .....+|++++++|+++...    .+.
T Consensus        82 ~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~  160 (345)
T PRK13499         82 LW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER  160 (345)
T ss_pred             HH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            76 7777899999999999999998 88899999999999998744       34578899999999999998    542


Q ss_pred             CC----CCccchhhhHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHH-HHhh--cC
Q 016434          254 DE----SNSSLWGSGEWWMLLAAQSMAVGT-----------------------------HMVIGGLPLMVI-SVLN--HD  297 (389)
Q Consensus       254 ~~----~~~~~~~~G~~~~l~aa~~~a~~~-----------------------------~~~~~~~~~~~~-~~~~--~~  297 (389)
                      +.    +......+|...++++++.++.|.                             .++++++..-.. ....  ..
T Consensus       161 ~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~  240 (345)
T PRK13499        161 KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKN  240 (345)
T ss_pred             ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            21    223457789999999999999888                             223444433321 1111  11


Q ss_pred             cccc-cccccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH----hhhhhHHHHHHHHHHHHhCCCCC--
Q 016434          298 PVYG-ESVKELT----SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS----SLTFLTPMFASIFGFLYLGETFS--  366 (389)
Q Consensus       298 ~~~~-~~~~~~~----~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s----~~~~~~pv~a~i~~~~~~ge~~~--  366 (389)
                      .... ......+    ......-+..| +.=.+++++|..+-++.+.+...    +.+.+..+++.++++ ++||.=+  
T Consensus       241 ~~~~~~~~~~~~~~~~~~n~l~~~l~G-~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~  318 (345)
T PRK13499        241 KDLSLKADFSLAKPLLITNVLLSALAG-VMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGAS  318 (345)
T ss_pred             CCcccchhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCC
Confidence            1110 0011111    11212113233 44556777777777776444333    444888899999998 5999766  


Q ss_pred             ----HHHHHHHHHHHHHHHHhhccCC
Q 016434          367 ----PLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       367 ----~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                          ...++|.++++.|.+++...+.
T Consensus       319 ~k~~~~l~~G~vliI~g~~lig~~~~  344 (345)
T PRK13499        319 RRPVRVLSLGCVVIILAANIVGLGNA  344 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhccc
Confidence                6779999999999999887653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.12  E-value=7.5e-09  Score=93.84  Aligned_cols=240  Identities=12%  Similarity=0.085  Sum_probs=180.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHH
Q 016434          143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA  222 (389)
Q Consensus       143 ~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla  222 (389)
                      ++..+.+.+-+++.++-..++..++++ ....+.++.+...++.+.. ...|.|.|++|++--.-.+-...--+-+++++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~-s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg  127 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTL-SSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG  127 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhc-chHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence            588999999999988886666555444 3334667777788888744 44699999999999888888888888899999


Q ss_pred             HHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCC----CCccchhhhHHHHHHHHHHHHHHH-------------------
Q 016434          223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----SNSSLWGSGEWWMLLAAQSMAVGT-------------------  279 (389)
Q Consensus       223 ~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~----~~~~~~~~G~~~~l~aa~~~a~~~-------------------  279 (389)
                      .++.+.|++..+.+...++-.||.+....+.++    .....-..|..+....-+.=+..+                   
T Consensus       128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~  207 (327)
T KOG1581|consen  128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF  207 (327)
T ss_pred             HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence            999999999999999999999999888764222    111122347777666666555444                   


Q ss_pred             -HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHH
Q 016434          280 -HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF  358 (389)
Q Consensus       280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~  358 (389)
                       ..+++.+......+..+.....-.+...+++.+.-++... +++++++.+.+.-+++.++.+...++.+.-.++++++.
T Consensus       208 ~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s-~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~  286 (327)
T KOG1581|consen  208 GVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS-TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSC  286 (327)
T ss_pred             HHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH-HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHH
Confidence             2234444444432222222211133445677777777777 67788999999999999999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          359 LYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       359 ~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      +.+|.+++..||+|..++..|+.+-.+
T Consensus       287 i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  287 IVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHhCCccchhhccCeeeehHHHHHHHH
Confidence            999999999999999999999887553

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.11  E-value=2.9e-09  Score=102.58  Aligned_cols=137  Identities=13%  Similarity=0.142  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCH-HHHHHHHHHHHHHHHHHHHHHhCC-CCC---CCh-hHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGT-FFVAAFRLIPAGLLLITFASSQGR-KLP---SGF-NAWVSIFLFALVDA  188 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p-~~~~~~R~~~~~l~~~~~~~~~~~-~~~---~~~-~~~~~~~~~g~~~~  188 (389)
                      ..|.+++++++++|+++.+..|...++.++ ...+++.+.++.+.+.++...... +..   ..+ ......+..+++ .
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t  266 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-T  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-H
Confidence            458899999999999999999877777654 466667777666665544443322 111   111 112233334444 4


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      .+++.++++++++.+++.+++..++.|++++++++++++|++++.+++|.++++.|++++.++.
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            6788899999999999999999999999999999999999999999999999999999998754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.08  E-value=8.7e-09  Score=97.39  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcC---HHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCChhHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFASSQGRK-------LPSGFNAWVSIFLFA  184 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~---p~~~~~~R~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~g  184 (389)
                      ..|.++.++++++|+...+..|...++.+   .....++...++.+.+.......+.+       ...+...+...+..+
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            46899999999999999999998655433   23444445555444333332222211       134557788888999


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++..+.+.++++++++.++.+++.+..++|++..+++++++||+++..+++|.+++++|+.+...+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999887654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.03  E-value=2.6e-08  Score=93.56  Aligned_cols=257  Identities=15%  Similarity=0.104  Sum_probs=152.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q 016434          111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC  190 (389)
Q Consensus       111 ~~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  190 (389)
                      +.+...|+++.+.+.++-+....+.|....+.+..   -.|              .+.....-.++  ...+.|+.....
T Consensus         2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~---~~~--------------~~~~~~~~l~~--~~W~~G~~~~~~   62 (300)
T PF05653_consen    2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG---SLR--------------AGSGGRSYLRR--PLWWIGLLLMVL   62 (300)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccc--------------ccchhhHHHhh--HHHHHHHHHHhc
Confidence            34556788999999999999998888654422210   000              00000000111  222333444455


Q ss_pred             HHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCcc-chh-------
Q 016434          191 FQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSS-LWG-------  262 (389)
Q Consensus       191 ~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~-~~~-------  262 (389)
                      +..+.+.|+.+.|.+..+.+..+.-++.++++..++|||+++.++.|+.+++.|..++..-+..+++.. ...       
T Consensus        63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~  142 (300)
T PF05653_consen   63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQ  142 (300)
T ss_pred             chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcC
Confidence            667888999999999999999999999999999999999999999999999999987765432221111 000       


Q ss_pred             h---hHHHHHHHHHHHHHHH----------------HHHHHHHHHHH---HHHhhcCcccccccccCCHHHHHHHHHHHH
Q 016434          263 S---GEWWMLLAAQSMAVGT----------------HMVIGGLPLMV---ISVLNHDPVYGESVKELTSSDILALLYTSI  320 (389)
Q Consensus       263 ~---G~~~~l~aa~~~a~~~----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  320 (389)
                      .   .+..........-.+.                ..++|+.....   +........ .....-.++..|..++.. +
T Consensus       143 ~~fl~y~~~~~~~~~~L~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~-~g~~~f~~~~~y~l~~~~-v  220 (300)
T PF05653_consen  143 PGFLVYFILVLVLILILIFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTF-SGDNQFTYPLTYLLLLVL-V  220 (300)
T ss_pred             cceehhHHHHHHHHHHHHHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHH-H
Confidence            0   1111111111111111                11111111100   000000000 000011234455444333 3


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHhhh-hhHHHHHHHHHHHHhCCC--CCH----HHHHHHHHHHHHHHHhhccCC
Q 016434          321 FGSAISYGVYFYSATKGSLTKLSSLT-FLTPMFASIFGFLYLGET--FSP----LQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~s~~~-~~~pv~a~i~~~~~~ge~--~~~----~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      .+........++|+++.+++.+.++. ..-...+++-+.++++|.  .++    ....|..+++.|+++....|+
T Consensus       221 ~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  221 VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            55566677779999999999888875 455667778888899985  444    446788999999999887664

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.02  E-value=9.7e-09  Score=91.87  Aligned_cols=251  Identities=17%  Similarity=0.126  Sum_probs=171.1

Q ss_pred             HhHHHHHHHhcc-------Cc-CHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------------C-ChhHHHHHHHHHHH
Q 016434          129 GTAMVAMKEVLP-------KA-GTFFVAAFRLIPAGLLLITFASSQGRKLP-------------S-GFNAWVSIFLFALV  186 (389)
Q Consensus       129 ~~~~~~~k~~~~-------~~-~p~~~~~~R~~~~~l~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~g~~  186 (389)
                      +.+.+..|++-.       .+ +|+..+..-++.-.++++.+.+.+.+...             . ++-+....+...++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            345566776542       12 38888888888887888777666543210             0 01111222335555


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCC-----CCCCccch
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF-----DESNSSLW  261 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~-----~~~~~~~~  261 (389)
                      . ..+..+.|.++.+++++.-+++.....+|+.+++..+++.+++.++|+|+....+|++++...+.     .-++.+..
T Consensus        96 D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i  174 (372)
T KOG3912|consen   96 D-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI  174 (372)
T ss_pred             H-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence            5 55556889999999999999999999999999999999999999999999999999999987751     12233456


Q ss_pred             hhhHHHHHHHHHHHHHHH--------------------HHHHHHHH----HHHHHHhhcCcccccccccCCHHHH-----
Q 016434          262 GSGEWWMLLAAQSMAVGT--------------------HMVIGGLP----LMVISVLNHDPVYGESVKELTSSDI-----  312 (389)
Q Consensus       262 ~~G~~~~l~aa~~~a~~~--------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----  312 (389)
                      ..|+++.+.+-+..|+.+                    ..++|.++    ..+...+.....+... ......+|     
T Consensus       175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~-~~g~~eD~~~~~~  253 (372)
T KOG3912|consen  175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCN-PRGVLEDWGDAFA  253 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCC-CCcchhhHHHHHH
Confidence            779999999999999888                    33444322    2333222222121110 00001111     


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHH----HhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 016434          313 -------LALLYTSIFGSAISYGVYFY----SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIY  381 (389)
Q Consensus       313 -------~~l~~~g~~~~~l~~~l~~~----al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~  381 (389)
                             .++...|   ..++..+++.    .-|..++++-.++..+...+--+++.....|.++..|+.|.++.+.|++
T Consensus       254 ~~~e~p~l~val~~---~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~  330 (372)
T KOG3912|consen  254 ALQESPSLAVALIG---FTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII  330 (372)
T ss_pred             HhcCCchhHHHHhh---hhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2222233   2333333322    3466789999999999999999999999999999999999999999999


Q ss_pred             Hhh
Q 016434          382 LVN  384 (389)
Q Consensus       382 l~~  384 (389)
                      +|+
T Consensus       331 lY~  333 (372)
T KOG3912|consen  331 LYN  333 (372)
T ss_pred             HHH
Confidence            986

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.00  E-value=3.2e-09  Score=99.42  Aligned_cols=134  Identities=10%  Similarity=0.031  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHH----HHHHHHHHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTF----FVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDAS  189 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~----~~~~~R~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~  189 (389)
                      ..+.++.++++++|+.+.+..|...++.++.    ....+.+....+.+..+...++. ........++..+..+.+...
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  222 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG  222 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence            3466778999999999999988765444432    23333333332222222222222 121222344555667777778


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHh
Q 016434          190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL  248 (389)
Q Consensus       190 ~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll  248 (389)
                      +++.++++++++.+++.++.+.+++|++..+++++++||+++..+++|.+++++|+.++
T Consensus       223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            88999999999999999999999999999999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.97  E-value=4.9e-09  Score=85.17  Aligned_cols=80  Identities=35%  Similarity=0.670  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          305 KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       305 ~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      ...+.+.+...++.+++++.+++.++++++++.+++.++.+.+++|+++.+++++++||+++..+++|.++++.|++++.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   46 KNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             cCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45677788888888988889999999999999999999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.90  E-value=3e-08  Score=93.81  Aligned_cols=138  Identities=17%  Similarity=0.054  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--h---------hHHHH-H
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSG--F---------NAWVS-I  180 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~--~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~--~---------~~~~~-~  180 (389)
                      ..|.++.++++++|+...+..|...+  +.++..++.+.+..+.+.+.|+....+......  .         ..... .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            56899999999999999999998887  789999999999999999988876543211000  0         01111 2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       181 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +..+.......+.+++++++++++..++++..+.|+++++++++++||+++..+++|.++++.|+.+.....
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            222222223333566789999999999999999999999999999999999999999999999999987643

specificities overlap.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.87  E-value=1.2e-08  Score=86.73  Aligned_cols=193  Identities=13%  Similarity=0.053  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHH
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWM  268 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~  268 (389)
                      .+.+..|..|+++.++++++.+......|+.+++++.+|+|+...++++.++++.|++++.+.+.+   ..+...|..++
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~---~a~e~iGi~~A  140 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE---HADEIIGIACA  140 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---hhhhhhhHHHH
Confidence            344568999999999999999999999999999999999999999999999999999999976521   22335699999


Q ss_pred             HHHHHHHHHHH---------------HHHHHHH-------HHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHH
Q 016434          269 LLAAQSMAVGT---------------HMVIGGL-------PLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS  326 (389)
Q Consensus       269 l~aa~~~a~~~---------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~  326 (389)
                      ..++...++|-               ..+.+.+       ...+...+.....  +++.......|..+...+.+..+ .
T Consensus       141 V~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V--E~~qsFA~~PWG~l~G~A~L~lA-F  217 (290)
T KOG4314|consen  141 VGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV--EHLQSFAAAPWGCLCGAAGLSLA-F  217 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch--HHHHHHhhCCchhhhhHHHHHHH-H
Confidence            99999998887               1111111       1111111111100  11111222334444444433333 3


Q ss_pred             HHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          327 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       327 ~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      .++.+.+.....|...++.+..........+.++-+-..+...++|..+|+.|.+++...+
T Consensus       218 N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  218 NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            3445778888899999999999999999999887777788999999999999999887654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.84  E-value=1.4e-07  Score=89.02  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhccCc--CHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          120 VLVSPFFFWGTAMVAMKEVLPKA--GTFFVAAFRLIPAGLLLITFASSQGRKLPS-GFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       120 ~l~~a~~~~~~~~~~~k~~~~~~--~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      ..++++++|+.+.+..|...++.  +....+.+...++.+...++.......... +...+...+..++ .....+.+++
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~  231 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHH
Confidence            46778899999999998765432  233334444444433322221110000111 1122233334454 4568889999


Q ss_pred             HHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       197 ~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++++.+++.++++.+++|++..++++++++|+++..+++|+++++.|+.++..++
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998887644

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.81  E-value=3.5e-07  Score=85.42  Aligned_cols=135  Identities=24%  Similarity=0.312  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAA-FRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG  193 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~-~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  193 (389)
                      ..|.++.+++++.|+...+..|... ..++..... +.+........+....... .+...+.+......|+++...++.
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999766 666666666 4444223333333322222 345567888888899998777889


Q ss_pred             HHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       194 ~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      ++++++++.++..++.+..+.|++..++++++++|+++..+++|+.+.+.|+.+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.81  E-value=2.3e-07  Score=74.02  Aligned_cols=70  Identities=17%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       181 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      ...++++...++.++.+++++.|.+.+..+.++.++++.+++++++|||+++.+++|+.++++|++++..
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3344456677888999999999999999998899999999999999999999999999999999998864

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.80  E-value=1.7e-07  Score=83.01  Aligned_cols=137  Identities=12%  Similarity=0.039  Sum_probs=122.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 016434          112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF  191 (389)
Q Consensus       112 ~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  191 (389)
                      .-+..|..+.+.+..+|..+.+..|..-+..+.-.-+..-+.+++++.+|+-..+..+.-..+.-....+..+++...+-
T Consensus       144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         144 SLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             cCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccc
Confidence            44567899999999999999999998887777777788889999999999988776666666677788888999999999


Q ss_pred             HHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHh
Q 016434          192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL  248 (389)
Q Consensus       192 ~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll  248 (389)
                      |.+-..++++.|...-.++.+++|.+.++.++++++|+++..||+++...+.+..-.
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999988876633

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.66  E-value=4.1e-07  Score=85.54  Aligned_cols=129  Identities=14%  Similarity=0.007  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLI----PAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC  190 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  190 (389)
                      .+|+++.+++.+.++.+....|..  +.+|...++.+..    .+.++..++   ++. .+...+..+..++.|++ ...
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~Gi~-~~i  223 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNILPGLM-WGI  223 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHHHHHH-HHH
Confidence            459999999999999999999965  4788888666555    444444444   111 22233455556668888 588


Q ss_pred             HHHHHHHHhh-cCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHH----HHHHHHHHHhHHhhc
Q 016434          191 FQGFLAQGLQ-RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGA----GGLVLGVIGLLLLEA  250 (389)
Q Consensus       191 ~~~~~~~al~-~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~----~g~~l~~~Gv~ll~~  250 (389)
                      ++.+|+.+.+ +.+++.+.++....|+...+++.+++||+.+++++    +|.++.+.|+.++..
T Consensus       224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            8889999999 99999999999999999999999999999999999    999999999988754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.1e-08  Score=89.51  Aligned_cols=251  Identities=14%  Similarity=0.099  Sum_probs=170.5

Q ss_pred             HHHHHhccC----cC-HHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016434          133 VAMKEVLPK----AG-TFFVAAFRLIPAGLLLITFASSQGRK--------LPSGFNAWVSIFLFALVDASCFQGFLAQGL  199 (389)
Q Consensus       133 ~~~k~~~~~----~~-p~~~~~~R~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~al  199 (389)
                      +..|++++.    +| |..+++.++++...+...+-....+-        .+.+.+..+..+-+.++. .++..+-++.+
T Consensus        45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL  123 (347)
T KOG1442|consen   45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL  123 (347)
T ss_pred             hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence            345666554    55 99999999999988776664433221        122222223333233332 33344557899


Q ss_pred             hcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 016434          200 QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT  279 (389)
Q Consensus       200 ~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  279 (389)
                      +|++++.-.+=..++.+|++++.++++|+|-+..-..+.++++.|-.+=...+...+..  -..|.++++++.++-|+..
T Consensus       124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~l--s~~GvifGVlaSl~vAlna  201 (347)
T KOG1442|consen  124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTL--SWIGVIFGVLASLAVALNA  201 (347)
T ss_pred             hhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCcc--chhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888888877755444222333  3459999999999887766


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCccccccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016434          280 --------------------HMVIGGLPLMVISVLNHDPVYGESVKE-LTSSDILALLYTSIFGSAISYGVYFYSATKGS  338 (389)
Q Consensus       280 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~  338 (389)
                                          ..+.+.++++|...+.++-..-..+.+ ++...|..+..-|+++..++|.- ..-+|-.+
T Consensus       202 iytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TS  280 (347)
T KOG1442|consen  202 IYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTS  280 (347)
T ss_pred             HhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eEEEEecc
Confidence                                334555566665555444221111112 24455655555555544444322 22356778


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          339 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       339 a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      |.+..+-....-..--++++.+++|.-+..-|-|-++|+.|...|++.|
T Consensus       281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            8888887777778888889999999999999999999999999988654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.65  E-value=1.5e-06  Score=83.96  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC-------cCHHHHHHHHHHHHHHHHHHHHHHhCCC-C---------CC---Ch
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRK-L---------PS---GF  174 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~-------~~p~~~~~~R~~~~~l~~~~~~~~~~~~-~---------~~---~~  174 (389)
                      ..|.++.++++++|+...+..|...++       .++..+..+...++.++++|+....+.. .         ..   ..
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            569999999999999999999987764       4577777777888888888876643211 0         00   00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      ......++.+.+...+.+.+.+++++++++...++...+.|+++.++++++++|+++..+++|.++++.|+.+-.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            111122222333333333444579999999999999999999999999999999999999999999999998754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.65  E-value=2.4e-07  Score=75.72  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          315 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFL--YLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       315 l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~--~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      .++.|+++.++++.+|.+++++.+++.+.++..+.+++..+.++.  +|||++++.+++|.++|++|++++.++++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            567888999999999999999999999999999998888888874  89999999999999999999999987654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.62  E-value=1.3e-06  Score=71.42  Aligned_cols=120  Identities=17%  Similarity=0.106  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      ++++++++.++-+..-++.|...++.+..+.....  ...+.    ..          .+....+..|+++..+++.++.
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~----~~----------~~p~~~i~lgl~~~~la~~~w~   66 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALL----AF----------GLALRAVLLGLAGYALSMLCWL   66 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHH----HH----------hccHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888889999887766543322211  00000    00          1111256777888888999999


Q ss_pred             HHhhcCChhHHHHHHhhHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          197 QGLQRTSAGLGSVIIDSQPLSVAVLAAL--LFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       197 ~al~~~~~~~a~~i~~~~Pv~~~lla~l--~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++++.|++.+..+....++++.+.++.  ++||++++.+++|++++++|++++..++
T Consensus        67 ~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         67 KALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999889888885  8999999999999999999999998754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.58  E-value=5.6e-07  Score=72.20  Aligned_cols=77  Identities=18%  Similarity=0.525  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          310 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       310 ~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      +.+...+..|+++...++.+++.++++.+ +.+.++..+.|+++.++++++++|+++..+++|.+++++|++++...+
T Consensus        32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            34445556676666689999999999999 588899999999999999999999999999999999999999988654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.53  E-value=1e-06  Score=70.28  Aligned_cols=68  Identities=10%  Similarity=0.128  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          318 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       318 ~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      .++++.++++.++..++++.+.+.+-.+.++.++++.++++++|||++++.+++|.++|++|++++..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34467788999999999999999999999999999999999999999999999999999999998765

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.52  E-value=6.7e-06  Score=69.43  Aligned_cols=130  Identities=20%  Similarity=0.200  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccC-------cCHHHHHHHHHHHHHHHHHHHHHHhCCCCC--------C-----ChhH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRKLP--------S-----GFNA  176 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~-------~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~--------~-----~~~~  176 (389)
                      |.++.+.+.++.+...+..|...++       .++.++.......+.+++.+.+...+....        .     ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4577889999999999988876543       679999999999999999888776554320        0     1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHH
Q 016434          177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL  247 (389)
Q Consensus       177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~l  247 (389)
                      +...+..|++. ...+...+..++++++...+++...-.+++.+++.++++|+++..+++|++++++|+.+
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            44445555555 66677999999999999999999999999999999999999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.52  E-value=2.3e-06  Score=72.25  Aligned_cols=104  Identities=18%  Similarity=0.305  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHhhcCcccccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHH
Q 016434          281 MVIGGLPLMVISVLNHDPVYGESVKEL-------TSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFA  353 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a  353 (389)
                      ...+.+.+.+...+.+++.........       +...+..++..| +...+-....+..+++.+|...++...++.+..
T Consensus        43 ~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~  121 (153)
T PF03151_consen   43 SPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSG-LLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILV  121 (153)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHH-HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHH
Confidence            445556666666666665532211111       234455555555 444456666688999999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          354 SIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       354 ~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      +++++++|||+++..+++|.++.+.|.++|++
T Consensus       122 i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  122 ILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            99999999999999999999999999998864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=98.47  E-value=3.2e-06  Score=78.03  Aligned_cols=72  Identities=17%  Similarity=0.340  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          313 LALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       313 ~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      ..+...| +...+.+.+++.++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|++++..
T Consensus        71 ~~~~~~g-~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        71 LSLLLCG-LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3344445 44677899999999999999999999999999999999999999999999999999999987743

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1e-07  Score=84.04  Aligned_cols=258  Identities=18%  Similarity=0.145  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      .++..++-++.||........  -.-+|.+.+..-.+.+.++.+.+.+.. .+ ......+...++.|++. ..++..++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k--~GG~p~qQ~lGtT~GALifaiiv~~~~-~p-~~T~~~~iv~~isG~~W-s~GQ~~Qf   77 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANK--FGGKPYQQTLGTTLGALIFAIIVFLFV-SP-ELTLTIFIVGFISGAFW-SFGQANQF   77 (288)
T ss_pred             hHHHHHHHHHHhcccceeeee--cCCChhHhhhhccHHHHHHHHHHheee-cC-ccchhhHHHHHHhhhHh-hhhhhhhh
Confidence            467788899999998865431  235688888877666666665555542 22 23446666667777765 77778999


Q ss_pred             HHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHHhHHhhccCC---CCCCccchhhhHHHH
Q 016434          197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAF---DESNSSLWGSGEWWM  268 (389)
Q Consensus       197 ~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~----~~g~~l~~~Gv~ll~~~~~---~~~~~~~~~~G~~~~  268 (389)
                      .|+++.+++.+..+ ..++-+-+.+++.+.++|-.+..+    .+++++.+.|+.+-...+.   +.++.+...+|....
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L  157 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL  157 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence            99999999999999 778889999999999999887665    4677888899999888762   334444566788888


Q ss_pred             HHHHHHHHHHH---------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016434          269 LLAAQSMAVGT---------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS  333 (389)
Q Consensus       269 l~aa~~~a~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~a  333 (389)
                      +.+.+.|-.|.               ...+|.+......-.....      ...+...|. -...|+ .=+++...+..+
T Consensus       158 ~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~~~------~~~~K~t~~-nii~G~-~Wa~GNl~ml~a  229 (288)
T COG4975         158 LISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFKME------KRFNKYTWL-NIIPGL-IWAIGNLFMLLA  229 (288)
T ss_pred             eeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcccc------cchHHHHHH-HHhhHH-HHHhhHHHHHHh
Confidence            88998888877               1122222222211111100      111233333 334553 344567777888


Q ss_pred             hccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHhhccC
Q 016434          334 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQ----LVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       334 l~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~----~~G~~lIi~g~~l~~~~~  387 (389)
                      .++.+.++.=.++.+..+++.+-++++++|+=+..+    ++|.++++.|..+....|
T Consensus       230 ~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K  287 (288)
T COG4975         230 AQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK  287 (288)
T ss_pred             hhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence            888888888788889999999999999999988766    567888888887776554

>TIGR00803 nst UDP-galactose transporter

Probab=98.41  E-value=1.9e-06  Score=77.80  Aligned_cols=173  Identities=13%  Similarity=-0.002  Sum_probs=104.9

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCC-----------------CCC-----Cccchh
Q 016434          205 GLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF-----------------DES-----NSSLWG  262 (389)
Q Consensus       205 ~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~-----------------~~~-----~~~~~~  262 (389)
                      ..........++++++.++.+.+||++..++++.++...|+......+.                 +..     ......
T Consensus         5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~   84 (222)
T TIGR00803         5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPV   84 (222)
T ss_pred             cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHH
Confidence            3445567778888888888888888888888888888888765332210                 010     001222


Q ss_pred             hhHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCccccc--c-cccCCHHHHHHHHHHH
Q 016434          263 SGEWWMLLAAQSMAVGT--------------------HMVIGGLPLMVISVLNHDPVYGE--S-VKELTSSDILALLYTS  319 (389)
Q Consensus       263 ~G~~~~l~aa~~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~g  319 (389)
                      .|....+.+..+-+...                    ..+++.+... ............  . ....+...|..+    
T Consensus        85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  159 (222)
T TIGR00803        85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SVLLWSDGTLISNFGFFIGYPTAVWIVG----  159 (222)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HHHhhcccchhhccCcccCCchHHHHHH----
Confidence            34333333333322222                    1122222111 111111111100  0 111223333222    


Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 016434          320 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV  383 (389)
Q Consensus       320 ~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~  383 (389)
                       +..+++..+....+++.++...+....++++++.++++++|||+++..+++|..+++.|++++
T Consensus       160 -~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       160 -LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             -HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence             345556677788899999999999999999999999999999999999999999999987653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.38  E-value=5.1e-05  Score=68.10  Aligned_cols=250  Identities=12%  Similarity=0.064  Sum_probs=161.9

Q ss_pred             HHHHHHhccC--cC--HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH
Q 016434          132 MVAMKEVLPK--AG--TFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL  206 (389)
Q Consensus       132 ~~~~k~~~~~--~~--p~~~~~~R~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~  206 (389)
                      .....+..+.  +.  -+.+++.++++-..+.+..+..-+. +...+   |+.+..++++. .+.+.+..-++.|++--.
T Consensus        59 Gy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP---~rtY~~la~~t-~gtmGLsn~SlgYLNYPt  134 (367)
T KOG1582|consen   59 GYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIP---WRTYVILAFLT-VGTMGLSNGSLGYLNYPT  134 (367)
T ss_pred             HHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecc---hhHhhhhHhhh-hhccccCcCccccccCcH
Confidence            3444444432  44  4677888777665555444322211 11222   33344444443 444567778888988877


Q ss_pred             HHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH-------
Q 016434          207 GSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT-------  279 (389)
Q Consensus       207 a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------  279 (389)
                      -.+...+--+=+++.+.++-|.|+++.+.++..+...|.++....+.... ++....|..+.-.|-++-|.-.       
T Consensus       135 QviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s-PNF~~~Gv~mIsgALl~DA~iGNvQEk~m  213 (367)
T KOG1582|consen  135 QVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS-PNFNLIGVMMISGALLADAVIGNVQEKAM  213 (367)
T ss_pred             HHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC-CCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence            77777777777788888999999999999999999999999988773222 2222347666555555544333       


Q ss_pred             -------------HHHHHHHHHHHHHHhhcCccccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhh
Q 016434          280 -------------HMVIGGLPLMVISVLNHDPVYGESV-KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSL  345 (389)
Q Consensus       280 -------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~  345 (389)
                                   ...+|...++......++-.-.... ...+.+...+.+... ..+.++......-++..+|..++.+
T Consensus       214 ~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s-~~gylG~~~VLalI~~fGA~~aatv  292 (367)
T KOG1582|consen  214 KMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS-LAGYLGIVFVLALIKLFGALIAATV  292 (367)
T ss_pred             hhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH-HHhHhhHHHHHHHHHHhchhHHHHH
Confidence                         3344444444443333332211111 122333444444444 3455566665666778899999999


Q ss_pred             hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          346 TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       346 ~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ....-.+++++++++|..+++.+..-|..+|+.|+++..+.|
T Consensus       293 TTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  293 TTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            999999999999999999999999999999999999987766

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.34  E-value=1.8e-05  Score=68.90  Aligned_cols=251  Identities=16%  Similarity=0.176  Sum_probs=162.2

Q ss_pred             HHHHHHHhccC--cC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 016434          131 AMVAMKEVLPK--AG-TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLG  207 (389)
Q Consensus       131 ~~~~~k~~~~~--~~-p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a  207 (389)
                      +.+..|+....  ++ -+.+.+++.+.-.+-+..+-+.+-.+.+.  ++.+.++...++... ....--.+++|.++..-
T Consensus        21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~--t~aK~WfpiSfLLv~-MIyt~SKsLqyL~vpiY   97 (309)
T COG5070          21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRL--TKAKKWFPISFLLVV-MIYTSSKSLQYLAVPIY   97 (309)
T ss_pred             HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheeh--hhhhhhcCHHHHHHH-HHHhcccceeeeeeeHH
Confidence            34556665553  44 45555666555444443333222222322  233333334444322 22244679999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCC--CccchhhhHHHHHHHHHHHHHHH------
Q 016434          208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES--NSSLWGSGEWWMLLAAQSMAVGT------  279 (389)
Q Consensus       208 ~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~--~~~~~~~G~~~~l~aa~~~a~~~------  279 (389)
                      ++...++.+.++....+++|.|++-.+....++.+..-+...+.+....  .....+.|+++...-.+..+.+.      
T Consensus        98 TiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkr  177 (309)
T COG5070          98 TIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKR  177 (309)
T ss_pred             HHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHh
Confidence            9999999999999999999999999999999988888777776652111  11245668887777666666555      


Q ss_pred             ----------HHHHHHHH----HHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhh
Q 016434          280 ----------HMVIGGLP----LMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSL  345 (389)
Q Consensus       280 ----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~  345 (389)
                                .+.+.-++    ++...++.+++....-....+.....++...|+...+++| +-.+.++-.+.+..+.+
T Consensus       178 i~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy-~saWcvrVtSSTtySMv  256 (309)
T COG5070         178 IKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY-CSAWCVRVTSSTTYSMV  256 (309)
T ss_pred             hcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh-ccceeEeehhhhHHHHH
Confidence                      44444433    4444455555443211223345555566666644444444 34677888899999999


Q ss_pred             hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          346 TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       346 ~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      ..+.-.-..+.|.++|+|+.+...+....+=..+..++..
T Consensus       257 GALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         257 GALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             HHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887776666666553

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.23  E-value=3.2e-06  Score=75.92  Aligned_cols=236  Identities=14%  Similarity=0.136  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHhhHHHHHHHH
Q 016434          144 TFFVAAFRLIPAGLLLITFASSQG-RKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQR-TSAGLGSVIIDSQPLSVAVL  221 (389)
Q Consensus       144 p~~~~~~R~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~a~~i~~~~Pv~~~ll  221 (389)
                      --.+++.++++-++-.+++.-... .+.+.+.|++...+.   + ....+.+-++++++ ++.-.=.++..-.++.++++
T Consensus        33 gNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~---m-FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~  108 (330)
T KOG1583|consen   33 GNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVA---M-FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL  108 (330)
T ss_pred             eeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehh---e-eeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence            466778888877776666542111 112223333332222   1 23344677889988 44444445578899999999


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCC-----------C---CCccchhhhHHHHHHHHHHHH---HHH-----
Q 016434          222 AALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD-----------E---SNSSLWGSGEWWMLLAAQSMA---VGT-----  279 (389)
Q Consensus       222 a~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~-----------~---~~~~~~~~G~~~~l~aa~~~a---~~~-----  279 (389)
                      +++++|+|++.+|..++++.-+|+++....+..           +   .+...+..|..+...+-+..|   +|.     
T Consensus       109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~  188 (330)
T KOG1583|consen  109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ  188 (330)
T ss_pred             HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987764411           1   112234456655555544433   222     


Q ss_pred             --------HHHHHHHHHHHHHHhhcCcccc--------c-----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016434          280 --------HMVIGGLPLMVISVLNHDPVYG--------E-----SVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS  338 (389)
Q Consensus       280 --------~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~  338 (389)
                              .+++.-.+.+|.-++..++...        +     .....-+..|.+++... +....|.-..+.--.+.+
T Consensus       189 kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~-L~Qy~CikgVy~L~te~~  267 (330)
T KOG1583|consen  189 KYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNV-LTQYFCIKGVYILTTETS  267 (330)
T ss_pred             HhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHH-HHHHHHHHhhhhhhceec
Confidence                    4555555555555544433210        0     01111244455554332 222222222233334557


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          339 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       339 a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      +-+++++..+.-.++.+++++.|+.+++++-|+|++++..|.+++.
T Consensus       268 sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  268 SLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             ceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            7788889999999999999999999999999999999999999876

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=98.17  E-value=0.0066  Score=57.06  Aligned_cols=270  Identities=13%  Similarity=0.090  Sum_probs=172.2

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChhHHHHHHHHHHHH
Q 016434          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVSIFLFALVD  187 (389)
Q Consensus       114 ~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~  187 (389)
                      -..|+++-.+..++-++.++-.|. .++.+-...=.+..+++.+++-.....-..+.      ..+........+.|++-
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kk-vk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW   83 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKK-VKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW   83 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhh-cCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence            357888888999999998887775 34455444444555555554433332222211      22335667778888887


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcC-------CCCcHHHHHHHHHHHHHhHHhhccCC------
Q 016434          188 ASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFG-------ESIGLVGAGGLVLGVIGLLLLEAPAF------  253 (389)
Q Consensus       188 ~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~-------Er~~~~~~~g~~l~~~Gv~ll~~~~~------  253 (389)
                      ..++ ..|=.+++|+..+...-| .-+..++-.++-.++.+       ++-....++|++++++|+++....+.      
T Consensus        84 GIGg-ltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~  162 (344)
T PF06379_consen   84 GIGG-LTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKEL  162 (344)
T ss_pred             hcch-hhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhh
Confidence            4444 688899999999998866 77788888777666643       33356789999999999999987551      


Q ss_pred             -CCCCccchhhhHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHhhcC--ccc
Q 016434          254 -DESNSSLWGSGEWWMLLAAQSMAVGT------------------------------HMVIGGLPLMVISVLNHD--PVY  300 (389)
Q Consensus       254 -~~~~~~~~~~G~~~~l~aa~~~a~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~  300 (389)
                       +......+.+|.+.++++++..+..+                              .+.-+.+..+..++....  ...
T Consensus       163 ~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~  242 (344)
T PF06379_consen  163 GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNW  242 (344)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCC
Confidence             11122346789999999999888777                              222333444555444311  111


Q ss_pred             c--cccccCC---HHHHHHHHHHHHHHHHHHHHHHHHHhccCC----hhHHHhhhhhHHHHHHHHHHHHhCCC------C
Q 016434          301 G--ESVKELT---SSDILALLYTSIFGSAISYGVYFYSATKGS----LTKLSSLTFLTPMFASIFGFLYLGET------F  365 (389)
Q Consensus       301 ~--~~~~~~~---~~~~~~l~~~g~~~~~l~~~l~~~al~~~~----a~~~s~~~~~~pv~a~i~~~~~~ge~------~  365 (389)
                      .  .+.....   .......+..| +.=..++++|-++-.+.+    ..--.+.+.+..+++-+++++ ++|.      .
T Consensus       243 s~~~d~~~~~~~~~~N~~~~aLaG-~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt  320 (344)
T PF06379_consen  243 SWKGDYSVAKPPLLKNYLFCALAG-VLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKT  320 (344)
T ss_pred             ccccccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCccc
Confidence            0  0111111   12333333344 333447777777665555    445566788899999999965 5763      3


Q ss_pred             CHHHHHHHHHHHHHHHHhhccC
Q 016434          366 SPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       366 ~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      -...++|.++++.++.++.+..
T Consensus       321 ~~vl~~G~~vlI~s~~ivG~G~  342 (344)
T PF06379_consen  321 IRVLVLGIAVLILSVVIVGYGM  342 (344)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            3566899999999999887654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.12  E-value=6.4e-05  Score=68.77  Aligned_cols=121  Identities=10%  Similarity=-0.131  Sum_probs=93.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 016434          112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF  191 (389)
Q Consensus       112 ~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  191 (389)
                      .+..++++.++++.+.+..+..+.|.  .+.+++...+-+.+.-.+....+....+  .+...|..++-++.|++. ..+
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~--~~~~~k~~~~nil~G~~w-~ig  208 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSK--KPFFEKKSWKNILTGLIW-GIG  208 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhccc--ccccccchHHhhHHHHHH-HHH
Confidence            34467899999999999999999885  5578888888776555554444544332  222235556667778776 666


Q ss_pred             HHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHH
Q 016434          192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGG  237 (389)
Q Consensus       192 ~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g  237 (389)
                      +.+++.+.+....+.+-.+..+.+++..+.+.+++||+-+++++..
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~  254 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY  254 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence            6899999999999999999999999999999999999999887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=1.8e-05  Score=72.85  Aligned_cols=255  Identities=14%  Similarity=0.121  Sum_probs=154.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH
Q 016434          109 VMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDA  188 (389)
Q Consensus       109 ~~~~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  188 (389)
                      .+..+...|.++.+.+-++.|....+-|....+...   ...|             ..+.+.+.. ++  +....|.+..
T Consensus        14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~r-------------a~~gg~~yl-~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLR-------------AGEGGYGYL-KE--PLWWAGMLTM   74 (335)
T ss_pred             hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hccc-------------ccCCCcchh-hh--HHHHHHHHHH
Confidence            344455677888888888888888888865543221   1111             111222222 22  2333455556


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccCCCCCCccc-h------
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSL-W------  261 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~-~------  261 (389)
                      ..+...-+.|+.+.|++..+.+.++..++.++++..+++||++....+|++++++|-.++..-...+..... .      
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~  154 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELA  154 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHh
Confidence            666777789999999999999999999999999999999999999999999999998777764421111110 0      


Q ss_pred             -hhhH---HHHHHHHHHHHHHH---------HHHHHHHHHHH--------------HHHhhcCcccccccccCCHHHHHH
Q 016434          262 -GSGE---WWMLLAAQSMAVGT---------HMVIGGLPLMV--------------ISVLNHDPVYGESVKELTSSDILA  314 (389)
Q Consensus       262 -~~G~---~~~l~aa~~~a~~~---------~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  314 (389)
                       ..+.   .......++.-++.         .+.+..+..+.              +-..+.+.     .....+..|..
T Consensus       155 ~~~~Fliy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~-----~ql~~~~ty~~  229 (335)
T KOG2922|consen  155 TEPGFLVYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN-----NQLFYPLTWIF  229 (335)
T ss_pred             cCccHHHHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-----cccccHHHHHH
Confidence             0011   11111111110110         01111111110              00111111     11123355555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHhhhh-hHHHHHHHHHHHHhCCCC--CH----HHHHHHHHHHHHHHHhhccC
Q 016434          315 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETF--SP----LQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       315 l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~-~~pv~a~i~~~~~~ge~~--~~----~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++... .|......-.++|++..+++.+.++.| +--.++++-+.++|+|.-  +.    ...+|+..|+.|+++....|
T Consensus       230 ~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  230 LLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence            55444 445555555699999999999998865 456677888899998853  32    45788899999999887655


Q ss_pred             C
Q 016434          388 S  388 (389)
Q Consensus       388 ~  388 (389)
                      .
T Consensus       309 d  309 (335)
T KOG2922|consen  309 D  309 (335)
T ss_pred             c
Confidence            3

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.95  E-value=0.00038  Score=55.18  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +.+..+++.++..++++.|.+.+-.+ ....-+.+.+++++++||++++.+++|+.+.++|++++...+
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44446677788999999999999988 668999999999999999999999999999999999997644

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.94  E-value=0.00033  Score=66.63  Aligned_cols=140  Identities=10%  Similarity=0.040  Sum_probs=108.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCC-C---CCCChhHHHHHHHHHHHH
Q 016434          112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR-K---LPSGFNAWVSIFLFALVD  187 (389)
Q Consensus       112 ~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~  187 (389)
                      .++.+|-++.++++.++|...++.+...++.+..++..+--+++.++..+.+...++ .   ...+.+....++.. .++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHH
Confidence            455789999999999999999999999999998888877777777777665543322 1   22333333333333 333


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       188 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      ....+.+.-..++.+++....+=.-++.++..+++.++.|+++++..++|.+++++|+++....+
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            45566677788889998877777888899999999999999999999999999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.91  E-value=0.00031  Score=56.45  Aligned_cols=69  Identities=26%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          184 ALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       184 g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      .+.+...++.++..++++.|.+.+-.+ ....-+.+++++.+++||+++..+++|+.++++|++++...+
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            344456677889999999999999988 478999999999999999999999999999999999987654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.89  E-value=4.6e-05  Score=60.21  Aligned_cols=110  Identities=15%  Similarity=0.028  Sum_probs=78.5

Q ss_pred             HHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016434          122 VSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQR  201 (389)
Q Consensus       122 ~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~  201 (389)
                      ++..++||+..++.|...+..++..-.. |..-....    .          ..++ ++.+.=+++ ..+...|++.+.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~----L----------l~n~-~y~ipf~lN-q~GSv~f~~~L~~   64 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF----L----------LLNP-KYIIPFLLN-QSGSVLFFLLLGS   64 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH----H----------HHhH-HHHHHHHHH-HHHHHHHHHHHhc
Confidence            4567899999999998887655333321 32221111    0          0111 222222333 5555789999999


Q ss_pred             CChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHh
Q 016434          202 TSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL  248 (389)
Q Consensus       202 ~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll  248 (389)
                      .+.+.+..+ +.+.=+|+++.++++.+|..++..++|+++.++|+.+.
T Consensus        65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            999999999 68999999999988888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.88  E-value=0.0002  Score=65.38  Aligned_cols=122  Identities=16%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHH
Q 016434          263 SGEWWMLLAAQSMAVGT-----------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  325 (389)
Q Consensus       263 ~G~~~~l~aa~~~a~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l  325 (389)
                      .|.++++.+-+.|+..-                 ..+++...+............-.+ ...+++.+......++. -..
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~l-i~~   84 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTALL-IGL   84 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHHH-HHH
Confidence            49999999999998766                 445555544444444333221111 23356677766666644 455


Q ss_pred             HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 016434          326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  386 (389)
Q Consensus       326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~  386 (389)
                      ...+|..|.+..+..+++...++.|++.+++|.++++|+++..|++..++..+|+....+.
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999887654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.82  E-value=0.00019  Score=56.90  Aligned_cols=68  Identities=9%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          320 IFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       320 ~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      +++.++++.++.+++++.+.+.+=.+ ..+..+...+.++++|||++++.+++|.++|++|++.....+
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35667799999999999999887665 568899999999999999999999999999999999987643

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.77  E-value=0.00097  Score=55.29  Aligned_cols=129  Identities=16%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 016434          118 WAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK-LPSGFNAWVSIFLFALVDASCFQGFL  195 (389)
Q Consensus       118 ~l~l~~a~~~~~~~~~~~k~~~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  195 (389)
                      .++.+++..+-+....++-...+..+ |...+++.+..+.+.+..+....+++ ....++..++..+-|+++ .....+.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG-~~~V~~~   81 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLG-VFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHH-HHHHHHH
Confidence            34556667777777777776677776 99999999999999998887777653 222223334455566665 6666788


Q ss_pred             HHHhhcCChhHHHHHHhh-HHHHHHHHHHH----HcCCCCcHHHHHHHHHHHHHhHH
Q 016434          196 AQGLQRTSAGLGSVIIDS-QPLSVAVLAAL----LFGESIGLVGAGGLVLGVIGLLL  247 (389)
Q Consensus       196 ~~al~~~~~~~a~~i~~~-~Pv~~~lla~l----~l~Er~~~~~~~g~~l~~~Gv~l  247 (389)
                      .+...+.+++.+..+..+ +-+...+++.+    .-++++++.+.+|+++.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            899999999999988554 66667777764    35789999999999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.00024  Score=55.24  Aligned_cols=67  Identities=27%  Similarity=0.344  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      +.+...++.++..++++.|.+.+-.+ .....+.+++.+++++||+.+..+++++.+.++|++.+...
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            33446677788999999999999887 88899999999999999999999999999999999988653

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.74  E-value=0.00027  Score=56.77  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          319 SIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       319 g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      .+++.++++.++.+++|+.+.+.+=.+ ..+..+...+.++++|||++++.+++|.++|++|++.+....
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            345667799999999999999887666 468999999999999999999999999999999999887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.73  E-value=0.00075  Score=63.86  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccC--cCHHHHHHHHHHHHHHHHHHHHHH--hCCCC------CCChhHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASS--QGRKL------PSGFNAWVSIFLFALV  186 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~--~~p~~~~~~R~~~~~l~~~~~~~~--~~~~~------~~~~~~~~~~~~~g~~  186 (389)
                      |+++++++.++-|......+...++  .++.+..++-..++.++.++.+..  .+...      ...+..+..+++..+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            8999999999999999999887764  679999999999998888777766  32211      1122344455555555


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      + ..++.+.++-.++.++...+++..+--+++.+++.+++++++++.+|.|+++.+.|..+-....
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~  299 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK  299 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence            5 5555677788999999999999999999999999999999999999999999999998866543

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.66  E-value=0.0018  Score=51.15  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      +...++.+...++++.|.+.+-.+ .....+.+.+.+.+++||++++.+++++.+.+.|++++.
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            345666788999999999999988 668899999999999999999999999999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.00064  Score=52.90  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhccCChhHH-HhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          321 FGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~-s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++..++|.+...++|+.+.+.+ ++-.-...+...+.++++|||+.++.+++|.+++++|++......
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            4566789999999999988665 566788999999999999999999999999999999999987654

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.57  E-value=0.00082  Score=52.76  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      +.+...++.+...++++.|.+.+-.+ .....+.+.+.+.+++||++++.+++++.+.++|++++..
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            33446667788999999999999988 6689999999999999999999999999999999998754

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.56  E-value=0.00079  Score=52.85  Aligned_cols=67  Identities=21%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhccCChhHH-HhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          321 FGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~-s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      ++.++++.+..+++|+.|.+.+ ++-.-+..+.+.+.++++|||++++.+++|.++|++|++..+..+
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~  104 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST  104 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence            5567799999999999998765 445668899999999999999999999999999999999887654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.53  E-value=4.7e-05  Score=68.22  Aligned_cols=136  Identities=14%  Similarity=0.099  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCChhHHHHHHHHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ-GRKLPSGFNAWVSIFLFALVDASCFQG  193 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~  193 (389)
                      .+|.+..+.+++.-+...+..|+..++.+....+.+-.+++.+.-...+..- .-..|..+++|+..+.+|+++ .++++
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfg-figQI  268 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFG-FIGQI  268 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhh-hHHHH
Confidence            4456778888888888889999887776644333333444444433333222 334566779999999999998 77888


Q ss_pred             HHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       194 ~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      +...++|.--++..++..++..+|..+...+|++|-++++.|.|+++.+...+.+...
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~  326 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK  326 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887776665543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.45  E-value=0.0013  Score=52.02  Aligned_cols=65  Identities=6%  Similarity=0.114  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhccCChhHH-HhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          321 FGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~-s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      ++.++++++..+++|+.|.+.+ ++..-+..+.+.+.++++|||++++.+++|.++|+.|++....
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl  108 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL  108 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            5567789999999999998766 4446688899999999999999999999999999999998753

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.29  E-value=0.003  Score=48.60  Aligned_cols=55  Identities=20%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLG  241 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~  241 (389)
                      +...++.++..++++.|.+.+-.+ ..+..+.+.+++.+++||+++..+++|+.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            446667789999999999999877 5699999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.009  Score=54.95  Aligned_cols=142  Identities=15%  Similarity=0.146  Sum_probs=113.1

Q ss_pred             cccchhhHHHHHHHHHHHHHHHhHHHHHHHhccC--cCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChhHHHH
Q 016434          108 QVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVS  179 (389)
Q Consensus       108 ~~~~~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~--~~p~~~~~~R~~~~~l~~~~~~~~~~~~~------~~~~~~~~~  179 (389)
                      ++.+.+...|++++....++=|........+.+.  ++++++++.-.+..++.-....+..+...      ...++-++-
T Consensus       164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~D  243 (327)
T KOG1581|consen  164 KSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFD  243 (327)
T ss_pred             ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHH
Confidence            3444566789999998888888888777766665  77999999988888888777766555432      124455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          180 IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       180 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      .+++..++ +.++.+.|+-++.-++-.-++|+.+==+++.+++.+..+.+++..+|.|+.+.+.|+.+=..
T Consensus       244 i~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  244 ILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHHHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence            77777776 77778889999998888888889999999999999999999999999999999999877443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.00  E-value=0.0099  Score=56.21  Aligned_cols=140  Identities=11%  Similarity=0.061  Sum_probs=107.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhccC----cC-HHHHHHHHHHHHHHHHHHHHH----HhCCCCC-CChhHHHHHH
Q 016434          112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPK----AG-TFFVAAFRLIPAGLLLITFAS----SQGRKLP-SGFNAWVSIF  181 (389)
Q Consensus       112 ~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~----~~-p~~~~~~R~~~~~l~~~~~~~----~~~~~~~-~~~~~~~~~~  181 (389)
                      .+...|.++.+++++++|.+.++.|.-.++    ++ +..+-+ --++..++++|..+    ....++. +...+....+
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGf-vGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv  321 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGF-VGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVV  321 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH-HHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence            456889999999999999999998876543    44 333322 23455555554332    2222332 2335556677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       182 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +.++++....-.++.+|.-.+++-.+++-..++.-..++...++-+.++++..++|.+.+++|-+++..++
T Consensus       322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            88899999999999999999999999988777777788899888899999999999999999999999876

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.98  E-value=0.0029  Score=48.65  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHh-hhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016434          321 FGSAISYGVYFYSATKGSLTKLSS-LTFLTPMFASIFGFLYLGETFSPLQLVGAAVT  376 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~s~-~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lI  376 (389)
                      .+.++++.++.+++|+.+.+.+=. ...+..+...+.++++|||++++.+++|..+|
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            466778999999999999998844 45699999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.82  E-value=0.0046  Score=58.23  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhcc----CcCHHHHHHHHHHHHHHHHH-HHHHHhCCCCC-------CChhHHHHHH
Q 016434          114 MLLEWAVLVSPFFFWGTAMVAMKEVLP----KAGTFFVAAFRLIPAGLLLI-TFASSQGRKLP-------SGFNAWVSIF  181 (389)
Q Consensus       114 ~~~g~l~l~~a~~~~~~~~~~~k~~~~----~~~p~~~~~~R~~~~~l~~~-~~~~~~~~~~~-------~~~~~~~~~~  181 (389)
                      ...|.+..+.+.+.+++..++.|....    ++|+........-++...++ |+....+....       .+.. ....+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            377999999999999999999988774    38899999999999999888 88777554322       2223 33444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       182 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      +..++. ...+...|..+.++++-.-++....--.++.+.++++++|++++.+..|.+++++|+.+=..
T Consensus       240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            444554 55556889999999999999998888888888999999999999999999999999988654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.73  E-value=0.014  Score=54.94  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          319 SIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       319 g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      |.+..+++..+...|+...|++.++++..+..++..+++..++||+++..+++|+++++.|..++.
T Consensus        56 G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   56 GLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            444556677788889999999999999999999999999999999999999999999999987654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.71  E-value=0.062  Score=49.11  Aligned_cols=207  Identities=14%  Similarity=0.129  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      |++..+++.+++|++++-.|. .+..|++.+-.+.+....+.-+.+...++.+.     -..+..+-|.+. +.++.+..
T Consensus         1 G~~a~~va~~~fGs~~vPvK~-~~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~-----f~p~amlgG~lW-~~gN~~~v   73 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKK-FDTGDGFFFQWVMCSGIFLVGLVVNLILGFPP-----FYPWAMLGGALW-ATGNILVV   73 (254)
T ss_pred             CchhHHHHHHHhcccceeeEe-ccCCCcHHHHHHHHHHHHHHHHHHHHhcCCCc-----ceeHHHhhhhhh-hcCceeeh
Confidence            456778999999999999995 44567777777766666666565555543221     122334444554 66778889


Q ss_pred             HHhhcCChhHHHHHHhhHHHHHH-HHHHH-HcCCC-----CcHHHHHHHHHHHHHhHHhhccCC----------------
Q 016434          197 QGLQRTSAGLGSVIIDSQPLSVA-VLAAL-LFGES-----IGLVGAGGLVLGVIGLLLLEAPAF----------------  253 (389)
Q Consensus       197 ~al~~~~~~~a~~i~~~~Pv~~~-lla~l-~l~Er-----~~~~~~~g~~l~~~Gv~ll~~~~~----------------  253 (389)
                      -.++....+.+..+-.+.-+++- ..+.+ +++++     -.+..++|++++++|..+...-..                
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~  153 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI  153 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence            99999999999999666444433 33322 33322     256778899999999887764210                


Q ss_pred             C------CC-----Ccc---------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccCCHHHHH
Q 016434          254 D------ES-----NSS---------LWGSGEWWMLLAAQSMAVGTHMVIGGLPLMVISVLNHDPVYGESVKELTSSDIL  313 (389)
Q Consensus       254 ~------~~-----~~~---------~~~~G~~~~l~aa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (389)
                      +      ++     +.+         ....|..+++++++.|+         ..+.|+..+.+..... +....+.-...
T Consensus       154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyG---------s~fvPv~Yi~~~~~~y-~~as~~~ldYv  223 (254)
T PF07857_consen  154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYG---------SNFVPVIYIQDHPDIY-PGASQNGLDYV  223 (254)
T ss_pred             ccccccccccccccccccccccccccchhHhHHHHHHHHHHHh---------cccchHHHHHhCcccc-CCCCCcchhee
Confidence            0      00     000         24468888888888887         5566777666654310 11122333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChh
Q 016434          314 ALLYTSIFGSAISYGVYFYSATKGSLT  340 (389)
Q Consensus       314 ~l~~~g~~~~~l~~~l~~~al~~~~a~  340 (389)
                      .--+.|++.+-..|++.|...+|-+|.
T Consensus       224 Fs~f~GIfltSt~~F~~Y~~~~rn~P~  250 (254)
T PF07857_consen  224 FSHFSGIFLTSTVYFVIYCIIKRNKPK  250 (254)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCCC
Confidence            445677777766777777777776653

The region concerned is approximately 280 residues long.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.63  E-value=0.012  Score=53.79  Aligned_cols=77  Identities=21%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          310 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       310 ~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      +.......=+ +...+...+.+.++++.+|+...++..++.+++.++.++++|.+++..||++..++.+|+.+.+...
T Consensus        15 ~~~~~~~vPA-~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   15 KDTLKLAVPA-LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            3333333333 4456677888999999999999999999999999999999999999999999999999999887653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.42  E-value=0.16  Score=42.27  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHHHH
Q 016434          116 LEWAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSG--FNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       116 ~g~l~l~~a~~~~~~~~~~~k~~~~~~~-p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~  192 (389)
                      ..++..+.+..+-.....++-.+.+..+ |..-.+..+..+.+++..+.+.+.+.....  .+..+|..+-|.++ +..-
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~v   83 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIFV   83 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhhh
Confidence            3455556666666666666665566665 999999999999888877776644333222  34445555556554 4444


Q ss_pred             HHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          193 GFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLF----GESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l----~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      ........+..++....+ ..-+-+...+++.+=.    +.+++..+++|+++.++|+.++..
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            444566666666666554 4445555566655332    478899999999999999555443

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.35  E-value=0.21  Score=47.80  Aligned_cols=138  Identities=13%  Similarity=0.049  Sum_probs=85.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhHH-------HHHHHhc-cCcCHHHHHHHHHH---HHHHHH-HHHHHH---hCCCCC----C
Q 016434          112 LGMLLEWAVLVSPFFFWGTAM-------VAMKEVL-PKAGTFFVAAFRLI---PAGLLL-ITFASS---QGRKLP----S  172 (389)
Q Consensus       112 ~~~~~g~l~l~~a~~~~~~~~-------~~~k~~~-~~~~p~~~~~~R~~---~~~l~~-~~~~~~---~~~~~~----~  172 (389)
                      .+..+|++.++++.+..++..       +..+... .+.++.....-.++   ++.++. ..++.+   ++++.+    +
T Consensus       170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~  249 (345)
T PRK13499        170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF  249 (345)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence            445678999999999999988       4444321 23555555554444   333333 334432   222211    1


Q ss_pred             --C----hhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH---HH-hhHHHHHHHHHHHHcCCCCc------HHHHH
Q 016434          173 --G----FNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSV---II-DSQPLSVAVLAALLFGESIG------LVGAG  236 (389)
Q Consensus       173 --~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---i~-~~~Pv~~~lla~l~l~Er~~------~~~~~  236 (389)
                        +    .++.....+.|++. ..++.++..+-+..+.+.+..   +. .+..++..+-+. ++||+-+      +..++
T Consensus       250 ~~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~  327 (345)
T PRK13499        250 SLAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSL  327 (345)
T ss_pred             cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHH
Confidence              1    23333335556554 666678888888886665555   65 666677777665 6999877      66688


Q ss_pred             HHHHHHHHhHHhhcc
Q 016434          237 GLVLGVIGLLLLEAP  251 (389)
Q Consensus       237 g~~l~~~Gv~ll~~~  251 (389)
                      |+++.++|+.++...
T Consensus       328 G~vliI~g~~lig~~  342 (345)
T PRK13499        328 GCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999998888764

>TIGR00803 nst UDP-galactose transporter

Probab=96.28  E-value=0.049  Score=48.93  Aligned_cols=59  Identities=12%  Similarity=0.015  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHH
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL  247 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~l  247 (389)
                      +.+..+..+.+++.+...-++...+.++++.+++.++++|+++..++.|+.+.+.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            55556889999999999999999999999999999999999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.0085  Score=53.48  Aligned_cols=117  Identities=20%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHH
Q 016434          264 GEWWMLLAAQSMAVGT---------------HMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG  328 (389)
Q Consensus       264 G~~~~l~aa~~~a~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~  328 (389)
                      ..+.+++=++.|+..-               .+.++++.+....+++..+.       .+...+..-...|.+- .+++.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~p~qQ~lGtT~GALifaiiv~~~~~p~-------~T~~~~iv~~isG~~W-s~GQ~   74 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGKPYQQTLGTTLGALIFAIIVFLFVSPE-------LTLTIFIVGFISGAFW-SFGQA   74 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCChhHhhhhccHHHHHHHHHHheeecCc-------cchhhHHHHHHhhhHh-hhhhh
Confidence            4556666667776544               56677777766665553322       3444554444445443 45899


Q ss_pred             HHHHHhccCChhHHHhhh-hhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccCC
Q 016434          329 VYFYSATKGSLTKLSSLT-FLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       329 l~~~al~~~~a~~~s~~~-~~~pv~a~i~~~~~~ge~~~~~~~----~G~~lIi~g~~l~~~~~~  388 (389)
                      .+.++++..+.+++.++. -+|.|-+.++++++|||..++.+.    +..++++.|+++..++++
T Consensus        75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            999999999999999985 789999999999999999997663    455788899988887764

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.32  E-value=0.41  Score=39.62  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHH
Q 016434          281 MVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFL  359 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~  359 (389)
                      ...+.+.+.....+..+.... .  ..+.+.|.+   .|.+..++...+.....++.+++..... ..-|.+.+.+++.+
T Consensus        38 ~~~G~i~~~i~~~~~~~~~~~-~--~~~~p~w~~---lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f  111 (138)
T PF04657_consen   38 FGVGFILLLIILLITGRPSLA-S--LSSVPWWAY---LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHF  111 (138)
T ss_pred             HHHHHHHHHHHHHHhcccccc-h--hccCChHHh---ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            455555555555555543211 1  112233333   3445566677777888999998877766 56788888888875


Q ss_pred             ----HhCCCCCHHHHHHHHHHHHHHHH
Q 016434          360 ----YLGETFSPLQLVGAAVTVVAIYL  382 (389)
Q Consensus       360 ----~~ge~~~~~~~~G~~lIi~g~~l  382 (389)
                          .-++++++.+++|.+++++|+++
T Consensus       112 G~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  112 GLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence                34578999999999999999864

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.31  E-value=0.11  Score=46.19  Aligned_cols=137  Identities=12%  Similarity=0.022  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC--cCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChhHHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVSIFLFALV  186 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~--~~p~~~~~~R~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~  186 (389)
                      ..|-++++++..+=|+........-.+  -+..++++.-.+.+.+.+-.-++..+.-+      .+.+..++.+.+.++.
T Consensus       171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~  250 (337)
T KOG1580|consen  171 GFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIA  250 (337)
T ss_pred             chHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            346667777777777777665444333  22344444444555554433332222111      1223566667777777


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       187 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      + ++++.|.+.-..+-++-.-+++..+--+|+.+.+.++++.+++.+||+|.++.+.|..+=...+
T Consensus       251 s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  251 S-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             H-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            6 6777788999999999899999999999999999999999999999999999999987765433

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.97  E-value=0.064  Score=42.52  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 016434          321 FGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  382 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l  382 (389)
                      .....+-.+|+..+.+.+-+.+.++ +.+.-+++.+.++++.+|..+...++|+++|++|+.+
T Consensus        49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            3444466677888999999999999 5999999999999888888899999999999999865

Many members are annotated as potential transmembrane proteins.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=0.33  Score=45.31  Aligned_cols=135  Identities=13%  Similarity=0.070  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC--cCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCChhHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKL--------PSGFNAWVSIFLFA  184 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~--~~p~~~~~~R~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~g  184 (389)
                      ..|+.++....+.-....+..|+..+.  .+-+.+.++..+...+.+.......+...        ......+....+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            447888888888888888888877764  66889999999999888877775554311        12224455666777


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhc
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA  250 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~  250 (389)
                      +++..+++ +.++..+..++...++.....-..+.+...++.++++++...+|+.++++|-++=..
T Consensus       236 v~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  236 VMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence            77766665 778999999988888888777777777777888899999999999999999776554

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=94.42  E-value=0.32  Score=37.48  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHhccCcC----H--HHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016434          119 AVLVSPFFFWGTAMVAMKEVLPKAG----T--FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ  192 (389)
Q Consensus       119 l~l~~a~~~~~~~~~~~k~~~~~~~----p--~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  192 (389)
                      .-++...++||...++.|......+    +  ....+.|-......                  .+.+.+.-.++ -++.
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l------------------~w~Y~iPFllN-qcgS   66 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL------------------NWEYLIPFLLN-QCGS   66 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH------------------hHHHHHHHHHH-HhhH
Confidence            3467888999999999997665422    2  22222222211111                  11222233334 3344


Q ss_pred             HHHHHHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          193 GFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       193 ~~~~~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      .+||.-+++++.+.+..+ ++++-.|+++.+..+-.|....+.++|..+.++|+.+..
T Consensus        67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            688999999999999988 777889999999877667777888999999999987643

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.39  E-value=1.2  Score=37.26  Aligned_cols=103  Identities=9%  Similarity=0.062  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhhcCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh-HHHhhhhhHHHHHHHHHHH
Q 016434          281 MVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLT-KLSSLTFLTPMFASIFGFL  359 (389)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~~l~~~al~~~~a~-~~s~~~~~~pv~a~i~~~~  359 (389)
                      ...|.+.+..+.++.+.... .. ...+...|.++   |.+..++-.+.......+.+++ .......-|.+.+++++.+
T Consensus        42 f~vGt~~L~~l~l~~~~~~~-~a-~~~~~pwW~~~---GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~f  116 (150)
T COG3238          42 FLVGTVLLLILLLIKQGHPG-LA-AVASAPWWAWI---GGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHF  116 (150)
T ss_pred             HHHHHHHHHHHHHHhcCCCc-hh-hccCCchHHHH---ccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555555555555433221 11 12233344433   3233443444445566666664 4555678888999998876


Q ss_pred             HhC----CCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          360 YLG----ETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       360 ~~g----e~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      =+.    .+++...++|.+++++|+++..++++
T Consensus       117 G~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~  149 (150)
T COG3238         117 GWFGVPKRPLNLPRILGILLVLAGILLARRFGA  149 (150)
T ss_pred             cccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence            544    57999999999999999877776654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.00  E-value=0.081  Score=45.71  Aligned_cols=61  Identities=18%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             HHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 016434          326 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  386 (389)
Q Consensus       326 ~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~  386 (389)
                      +.++|..++++.+|+.++.+..-.-.+..+++++++|+++....++..++.+.|++.+.+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            5677889999999999999999999999999999999999999999999999998877643

>PRK02237 hypothetical protein; Provisional

Probab=92.92  E-value=0.92  Score=35.32  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=42.3

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          341 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       341 ~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      ..+.+.-.-.+.++++++.+-|++|+...++|+++.++|+.++....|
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            346677888999999999999999999999999999999988876654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.66  E-value=0.044  Score=50.98  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          318 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       318 ~g~~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      .|.+..+++-.+.+.++...+++.++++..++.+...+++..+++|.++....+|+++.++|..++.
T Consensus        69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            4667778888888899999999999999999999999999999999999999999999998876654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=91.93  E-value=1.4  Score=39.14  Aligned_cols=132  Identities=12%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CChhHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKLP------SGFNAWVSIFLFALVDA  188 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~--~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~  188 (389)
                      |++++..-.+.-+......|.-.+  +....+.+++..+++..+++.+-...+.+.+      .+.....+.++.|++..
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv  235 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV  235 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence            566666555555555555554433  4568899999999999888877665544322      23344456777777776


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       189 ~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      +..+ |.-|.++-++...-+++.++.-.-.++-+.++++|+.+...+.++++++...++-.
T Consensus       236 giSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa  295 (309)
T COG5070         236 GISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             hhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            6664 77899999999999999999999999999999999999999999999877654433

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=91.90  E-value=1.2  Score=42.24  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          322 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       322 ~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      ..++...+++.++.+.+|++..+...+..+.+.++.+++++++++..||...++..+|+.+++.
T Consensus       101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen  101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            3444556889999999999999999999999999999999999999999999999999999884

>PRK02237 hypothetical protein; Provisional

Probab=91.66  E-value=3.2  Score=32.41  Aligned_cols=39  Identities=8%  Similarity=-0.021  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          213 SQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       213 ~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      ...+...+..+.+-|+|+++.+++|..++++|+.++...
T Consensus        68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~  106 (109)
T PRK02237         68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA  106 (109)
T ss_pred             HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence            345556677888899999999999999999999988653

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.67  E-value=3.2  Score=32.26  Aligned_cols=53  Identities=13%  Similarity=0.012  Sum_probs=39.0

Q ss_pred             hhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhcc
Q 016434          199 LQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP  251 (389)
Q Consensus       199 l~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~  251 (389)
                      ++-.+.+++-.- -....+.+.+..+.+-|+|+.+.+++|..++++|+.++...
T Consensus        51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            343333333322 33456667778888899999999999999999999998764

; GO: 0016020 membrane

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.32  E-value=2.1  Score=33.32  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=42.5

Q ss_pred             HHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          342 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       342 ~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      .+.+.-.-.+.+.++++.+-|++|+..+++|+++.+.|+.++.+..|
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            46677888999999999999999999999999999999999887765

; GO: 0016020 membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=89.55  E-value=1.6  Score=39.90  Aligned_cols=60  Identities=8%  Similarity=0.104  Sum_probs=43.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhHHHHHHHhccCc--------CH----HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016434          111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKA--------GT----FFVAAFRLIPAGLLLITFASSQGRKL  170 (389)
Q Consensus       111 ~~~~~~g~l~l~~a~~~~~~~~~~~k~~~~~~--------~p----~~~~~~R~~~~~l~~~~~~~~~~~~~  170 (389)
                      .+++..|+++.+++.+++|.+++-.++..++-        ++    +.....-++.+.+.++.++..+|.+.
T Consensus       178 ~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P  249 (254)
T PF07857_consen  178 RKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKP  249 (254)
T ss_pred             ccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCC
Confidence            34468899999999999999998888776653        23    33444456667777888888877554

The region concerned is approximately 280 residues long.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.35  E-value=4.2  Score=37.26  Aligned_cols=137  Identities=13%  Similarity=0.081  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC--cCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCChhHHHHHHHHHH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKL-------PSGFNAWVSIFLFAL  185 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~--~~p~~~~~~R~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~  185 (389)
                      ..|+.+.-++.++=+...-......+.  -+..+++++-+.++.++++..+...+.-+       ..+++.....++.+.
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~  268 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL  268 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence            344544444444444444443333332  34678888888888888877776665432       224456666666666


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          186 VDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       186 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      .+ .++..+...-++.-++..++++...--..+.+++++++.++++....-+.++.+.|+++=..+.
T Consensus       269 ~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  269 AG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             Hh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            55 4444343333445677777777777778899999999999999999999999999999988776

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=88.40  E-value=1  Score=41.29  Aligned_cols=65  Identities=14%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 016434          321 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  385 (389)
Q Consensus       321 ~~~~l~~~l~~~al~~~~a~~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~  385 (389)
                      +|-..+-.+.+.++...+|+-...+.-...+|..+++..+++.+++..+|+|...+++|++++..
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            45555677788999999999999999999999999999999999999999999999999988754

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.93  E-value=0.69  Score=42.28  Aligned_cols=135  Identities=16%  Similarity=0.138  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCcC--HHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCChhHHHHHHHHH
Q 016434          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAG--TFFVAAFRLIPAGLLLITFASSQGRK-------LPSGFNAWVSIFLFA  184 (389)
Q Consensus       114 ~~~g~l~l~~a~~~~~~~~~~~k~~~~~~~--p~~~~~~R~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~g  184 (389)
                      ...|.++.+.+.+.-+.+.+.+|..+...+  -+.++++..+.+.++++|.+...+.-       ..+..+-|..+.+.|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            367899999999999999999996665544  78999999999999999998876531       122345555666667


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhh
Q 016434          185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE  249 (389)
Q Consensus       185 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~  249 (389)
                      +++...++ ...+=++-+++-.-.+=...-...-.+++..+++|.-+...|-+-++.++|-.+-.
T Consensus       263 lfgF~mgy-vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT  326 (347)
T KOG1442|consen  263 LFGFAMGY-VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT  326 (347)
T ss_pred             HHHHHhhh-eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence            77655554 22333444544322211222333445677889999999988988888887765543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=85.80  E-value=17  Score=34.08  Aligned_cols=133  Identities=14%  Similarity=0.042  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccC-----cCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------CC----hhH
Q 016434          115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-----AGTFFVAAFRLIPAGLLLITFASSQGRKLP---------SG----FNA  176 (389)
Q Consensus       115 ~~g~l~l~~a~~~~~~~~~~~k~~~~~-----~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~---------~~----~~~  176 (389)
                      ..|..+..++.++-|.-..+++...++     -+|....+--.-.-.+.++|..+.-++...         .+    .+.
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            557777778888888888877776654     235544443333333333443333332211         11    122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHh
Q 016434          177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL  248 (389)
Q Consensus       177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll  248 (389)
                      ...+.+.|.+. ++.-.+-+.=+..++.-..++..---=+.+.+++..+++++++...|.|..++..|+.+=
T Consensus       243 ~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            23333334333 222234455566777766666666677888899999999999999999999999999886

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=85.17  E-value=4.9  Score=31.21  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=35.7

Q ss_pred             hccCChhHHHhhh-hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 016434          334 ATKGSLTKLSSLT-FLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  384 (389)
Q Consensus       334 l~~~~a~~~s~~~-~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~  384 (389)
                      .+..++.+.-+++ .....+=..++++++||++++..+.|.++++++++.+.
T Consensus        56 ~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   56 YQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             ccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            3444555555544 22333345667889999999999999999999987654

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=80.18  E-value=6.9  Score=30.26  Aligned_cols=48  Identities=10%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             HHHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          341 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       341 ~~s~~~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      ..+.+.-.-.+.+.++.+.+=|.+|+...++|.++-++|+.++....+
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            345567778899999999999999999999999999999887766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.87
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.85
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.78
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.71

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.87  E-value=5.1e-08  Score=76.61  Aligned_cols=102  Identities=17%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      .+++++++.++........|...+ ..                               +.  +..+.+.++..+++.++.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~~-~~-------------------------------~~--~~~~~~~~~~~~~~~~~~   48 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSEG-FT-------------------------------RL--WPSVGTIICYCASFWLLA   48 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC-cc-------------------------------hH--HHHHHHHHHHHHHHHHHH
Confidence            467778888888888888886321 10                               11  122456666678888999


Q ss_pred             HHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       197 ~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|++++...+
T Consensus        49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999 899999999999999999999999999999999999998754

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.85  E-value=4.9e-09  Score=85.41  Aligned_cols=71  Identities=8%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 016434          317 YTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  387 (389)
Q Consensus       317 ~~g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~  387 (389)
                      .+++++++++|.++++++++.+++++..+ ..+.|+++.++++++|||++++.+++|.++|++|++++.+.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35668899999999999999999999999 899999999999999999999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.78  E-value=1.5e-08  Score=82.57  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016434          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA  196 (389)
Q Consensus       117 g~l~l~~a~~~~~~~~~~~k~~~~~~~p~~~~~~R~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (389)
                      .+++++++.++-.....+.|... ++                            .   +  .+..+.++++..+++.++.
T Consensus         3 ~~l~Ll~ail~ev~~~~~lK~s~-g~----------------------------~---~--~~~~~l~i~~~~ls~~l~~   48 (137)
T 2i68_A            3 PYIYLGGAILAEVIGTTLMKFSE-GF----------------------------T---R--LWPSVGTIICYCASFWLLA   48 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cc----------------------------c---h--HHHHHHHHHHHHHHHHHHH
Confidence            35677777777777777777531 00                            0   0  0123466667788889999


Q ss_pred             HHhhcCChhHHHHH-HhhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhHHhhccC
Q 016434          197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA  252 (389)
Q Consensus       197 ~al~~~~~~~a~~i-~~~~Pv~~~lla~l~l~Er~~~~~~~g~~l~~~Gv~ll~~~~  252 (389)
                      +++++.+++.+..+ ..+.|++++++++++++|++++.+++|++++++|++++...+
T Consensus        49 ~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999 899999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.71  E-value=7.1e-08  Score=75.78  Aligned_cols=71  Identities=8%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHhh-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016434          318 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  388 (389)
Q Consensus       318 ~g~~~~~l~~~l~~~al~~~~a~~~s~~-~~~~pv~a~i~~~~~~ge~~~~~~~~G~~lIi~g~~l~~~~~~  388 (389)
                      .++++.++++.++.+++|+.+.+.+-.+ ..+.|+++.++++++|||++++.+++|.++|++|+++..+.++
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~  106 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            5567788899999999999999999988 8999999999999999999999999999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00