Citrus Sinensis ID: 016437

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
cHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHHccccccHHccccccccccccHHHccccccccccccEccccccccEEEEEEEccccccccccccccccEEEEEEccccccEHHHHHHcHHHHHHHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHHHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccEEEccccccccEcccccccEcccccccHHHccEccccHHHHHHHHHccccccccccccEcccEHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvpeplippagarvMSLTDGlskmsksapsdqsrinlldpkdvIANKIkrcktdssaglefdnlerpecnnLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYggrkwkklggrGGAIFkvpeplippaGARVMSLTDGLSKMSksapsdqsrinlldpkdviANKIKRCKtdssaglefdnlerpecNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLadgaakaadiadaTLNNVYQAMGFLRR
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP*********************************DVIANKIKRCKT***AGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF***
******S*FLIVSNSSPR**************************************************************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF***************LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM*****************SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD*************SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
****LLS*FLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSE**********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
Q8DHG3330 Tryptophan--tRNA ligase O yes no 0.763 0.9 0.565 1e-101
Q8YXE4335 Tryptophan--tRNA ligase O yes no 0.768 0.892 0.542 1e-100
Q7TTU9337 Tryptophan--tRNA ligase O yes no 0.776 0.896 0.502 6e-93
Q7TV34337 Tryptophan--tRNA ligase O yes no 0.773 0.893 0.507 2e-92
Q7NCG8336 Tryptophan--tRNA ligase O yes no 0.778 0.901 0.495 8e-91
P73655337 Tryptophan--tRNA ligase O N/A no 0.773 0.893 0.520 1e-90
Q7VBM9339 Tryptophan--tRNA ligase O yes no 0.778 0.893 0.504 5e-89
Q7V286338 Tryptophan--tRNA ligase O yes no 0.773 0.890 0.485 5e-88
Q92HR1330 Tryptophan--tRNA ligase O yes no 0.768 0.906 0.460 7e-78
Q9ZD76330 Tryptophan--tRNA ligase O yes no 0.768 0.906 0.451 2e-76
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1 Back     alignment and function desciption
 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/336 (56%), Positives = 227/336 (67%), Gaps = 39/336 (11%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q  YE  F +VDLHAIT+P+D  +L+  T   AA
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
           +YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K  GENV   
Sbjct: 61  LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119

Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
           LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+   +          I 
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171

Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 320
           K+PEPLIP AGARVMSLTDG  KMSKS PS+ SRINLLD  D I  KIKRCKTD   GL 
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCKTDPIRGLA 231

Query: 321 FDNLERPECNNLLSIYQLISGKTKGV------------------------------RYEE 350
           FD+ +RPE NNLLS+YQ+++GKTK                                RY E
Sbjct: 232 FDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLEPIQQRYNE 291

Query: 351 IMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 386
           IM+D +YL  +L  G  +AA +A+ATL  V  A GF
Sbjct: 292 IMADPSYLKDLLKKGQEQAATVANATLERVKLAFGF 327

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2 Back     alignment and function description
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E) GN=trpS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
225429361416 PREDICTED: tryptophanyl-tRNA synthetase 0.992 0.927 0.763 1e-180
255550960412 tryptophanyl-tRNA synthetase, putative [ 0.982 0.927 0.780 1e-178
449436894414 PREDICTED: tryptophan--tRNA ligase-like 0.984 0.925 0.75 1e-175
224075399403 predicted protein [Populus trichocarpa] 0.946 0.913 0.752 1e-172
356518366393 PREDICTED: tryptophanyl-tRNA synthetase- 0.856 0.847 0.782 1e-162
356510049398 PREDICTED: tryptophanyl-tRNA synthetase- 0.804 0.786 0.827 1e-161
57899972399 putative tryptophanyl-tRNA synthetase [O 0.948 0.924 0.699 1e-158
242058649405 hypothetical protein SORBIDRAFT_03g03427 0.964 0.925 0.687 1e-157
357136379399 PREDICTED: tryptophanyl-tRNA synthetase- 0.948 0.924 0.694 1e-157
226491928405 uncharacterized protein LOC100272291 [Ze 0.958 0.920 0.686 1e-156
>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/419 (76%), Positives = 344/419 (82%), Gaps = 33/419 (7%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGR++LSHFL +SN SPR  SSL   S G +PSK  K  G I Q+  L      GFRC C
Sbjct: 1   MGRSVLSHFLNLSNPSPRFTSSL---SSGAIPSKLLKKSGSIDQHCLLNRQIRTGFRCCC 57

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           ++S+S+P    +SSS ++KRIVSGVQPTG+IHLGNYLGAIKNWI LQN+Y+T FFIVDLH
Sbjct: 58  SISVSQPAGQESSSSPLRKRIVSGVQPTGTIHLGNYLGAIKNWIPLQNTYDTFFFIVDLH 117

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+TQQL KATR+TAAIYLACG+D SKASVFVQSHVRAH ELMWLLSSATPIGWLN
Sbjct: 118 AITLPYETQQLFKATRDTAAIYLACGVDTSKASVFVQSHVRAHSELMWLLSSATPIGWLN 177

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           KMIQFKEKS K G ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 178 KMIQFKEKSRKVGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 237

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
           NYLYGGRKWKKLGGRGGAIFKVPEPLIPP GARVMSLTDG SKMSKSA SDQSRINLLDP
Sbjct: 238 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPEGARVMSLTDGCSKMSKSASSDQSRINLLDP 297

Query: 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTK---------------- 344
           KDVIANKIKRCKTDS  GLEFDN ERPECNNLL+IYQL+SG+TK                
Sbjct: 298 KDVIANKIKRCKTDSFPGLEFDNPERPECNNLLTIYQLMSGRTKEEVAQECQGMNWGVFK 357

Query: 345 --------------GVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
                          VRYEEIMSDSAYLD++LA+GA KAADIADATLNNVYQAMGFLRR
Sbjct: 358 RILTDALIDHLHPIQVRYEEIMSDSAYLDRLLAEGATKAADIADATLNNVYQAMGFLRR 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242058649|ref|XP_002458470.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] gi|241930445|gb|EES03590.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|226491928|ref|NP_001140250.1| uncharacterized protein LOC100272291 [Zea mays] gi|194698694|gb|ACF83431.1| unknown [Zea mays] gi|414880562|tpg|DAA57693.1| TPA: hypothetical protein ZEAMMB73_474699 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2043570412 OVA4 "ovule abortion 4" [Arabi 0.861 0.813 0.660 2.5e-121
UNIPROTKB|P00954334 trpS "tryptophanyl-tRNA synthe 0.647 0.754 0.479 3.7e-64
TIGR_CMR|BA_1188329 BA_1188 "tryptophanyl-tRNA syn 0.640 0.756 0.501 1.6e-63
TIGR_CMR|SO_0294332 SO_0294 "tryptophanyl-tRNA syn 0.647 0.759 0.468 4.2e-63
TIGR_CMR|APH_0035331 APH_0035 "tryptophanyl-tRNA sy 0.637 0.749 0.494 4.2e-61
TIGR_CMR|ECH_0167333 ECH_0167 "tryptophanyl-tRNA sy 0.624 0.729 0.498 4.3e-61
TIGR_CMR|CPS_0480335 CPS_0480 "tryptophanyl-tRNA sy 0.647 0.752 0.468 5.4e-61
TIGR_CMR|SPO_0392338 SPO_0392 "tryptophanyl-tRNA sy 0.665 0.766 0.446 9.9e-60
UNIPROTKB|Q9KNV7338 trpS "Tryptophan--tRNA ligase" 0.655 0.754 0.446 6.1e-58
TIGR_CMR|VC_2623338 VC_2623 "tryptophanyl-tRNA syn 0.655 0.754 0.446 6.1e-58
TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
 Identities = 237/359 (66%), Positives = 272/359 (75%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ++YETLF IVD 
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFIIVDH 105

Query:   120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
             HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL S+TPIGWL
Sbjct:   106 HAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWL 165

Query:   180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
              KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+EL RE+A+R
Sbjct:   166 QKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQR 225

Query:   240 VNXXXXXXX----XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295
             VN                    ++FK+PEPLIP AGARVMSLTDGLSKMSKSAPSDQSRI
Sbjct:   226 VNHLYGGKKWKKLGGYEIFRGGSLFKIPEPLIPQAGARVMSLTDGLSKMSKSAPSDQSRI 285

Query:   296 NLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGVRYEEIMSD 354
             NLLD KD+I +KIKRCKTDS AGLEFDN ERPECNNLLSIYQ++SGK K    EE+M +
Sbjct:   286 NLLDSKDLIVDKIKRCKTDSFAGLEFDNAERPECNNLLSIYQIVSGKKK----EEVMEE 340
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0392 SPO_0392 "tryptophanyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNV7 trpS "Tryptophan--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2623 VC_2623 "tryptophanyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7VBM9SYW_PROMA6, ., 1, ., 1, ., 20.50430.77890.8938yesno
Q7TV34SYW_PROMM6, ., 1, ., 1, ., 20.50730.77370.8931yesno
P67586SYW_BRUME6, ., 1, ., 1, ., 20.43380.80200.8788yesno
P67587SYW_BRUSU6, ., 1, ., 1, ., 20.43380.80200.8788yesno
Q98C31SYW_RHILO6, ., 1, ., 1, ., 20.42370.80460.8816yesno
Q8DHG3SYW_THEEB6, ., 1, ., 1, ., 20.56540.76340.9yesno
Q7TTU9SYW_SYNPX6, ., 1, ., 1, ., 20.50290.77630.8961yesno
Q8YXE4SYW_NOSS16, ., 1, ., 1, ., 20.54270.76860.8925yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
PLN02886389 PLN02886, PLN02886, aminoacyl-tRNA ligase 0.0
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 1e-176
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 1e-121
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 1e-112
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 1e-106
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 2e-87
PRK12282333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 2e-76
PRK12283398 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; 4e-68
PRK12556332 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; 1e-62
PRK12284431 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; 5e-48
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 4e-32
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 6e-15
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 1e-08
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 9e-08
TIGR00234377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 3e-06
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 0.002
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  662 bits (1710), Expect = 0.0
 Identities = 270/393 (68%), Positives = 298/393 (75%), Gaps = 36/393 (9%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
           PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114

Query: 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206
           ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174

Query: 207 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 266
           LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234

Query: 267 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 326
           IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS  GLEFDN ER
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPER 294

Query: 327 PECNNLLSIYQLISGKTK------------------------------GVRYEEIMSDSA 356
           PECNNLLSIYQL++GKTK                               VRYEEIMSD +
Sbjct: 295 PECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPS 354

Query: 357 YLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
           YLD VL +GA  AA+IAD TL NVYQAMGF++R
Sbjct: 355 YLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387

Length = 389
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
PLN02886389 aminoacyl-tRNA ligase 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PRK05912408 tyrosyl-tRNA synthetase; Validated 100.0
PRK13354410 tyrosyl-tRNA synthetase; Provisional 100.0
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
KOG2144360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 99.98
cd00808239 GluRS_core catalytic core domain of discriminating 99.73
KOG2623467 consensus Tyrosyl-tRNA synthetase [Translation, ri 99.67
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.5
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.25
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.83
cd00674353 LysRS_core_class_I catalytic core domain of class 98.77
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 98.72
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 98.71
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 98.66
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.62
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.46
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.45
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.35
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.33
PLN02627 535 glutamyl-tRNA synthetase 98.29
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.26
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 98.25
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.18
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 98.18
PLN03233 523 putative glutamate-tRNA ligase; Provisional 98.16
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 98.05
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 97.97
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 97.97
PLN02907 722 glutamate-tRNA ligase 97.92
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 97.87
PLN02859 788 glutamine-tRNA ligase 97.87
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 97.78
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 97.73
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.62
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.55
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 97.52
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 97.48
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 97.38
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 97.3
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 97.23
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 97.2
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 97.13
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 97.12
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 96.66
PLN02946 557 cysteine-tRNA ligase 95.41
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 94.47
KOG1149 524 consensus Glutamyl-tRNA synthetase (mitochondrial) 94.3
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 93.4
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 92.91
PRK12268 556 methionyl-tRNA synthetase; Reviewed 92.69
PLN02224 616 methionine-tRNA ligase 92.33
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 92.32
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 90.67
PLN02610 801 probable methionyl-tRNA synthetase 90.67
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 89.76
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 88.73
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 88.71
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 86.16
PRK11893 511 methionyl-tRNA synthetase; Reviewed 86.15
PRK12267 648 methionyl-tRNA synthetase; Reviewed 86.11
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 85.71
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 85.21
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 84.28
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 84.08
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 83.67
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 83.39
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 83.36
PRK11893 511 methionyl-tRNA synthetase; Reviewed 83.29
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 83.18
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 82.97
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 82.92
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 82.37
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 81.95
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 81.27
PRK12418384 cysteinyl-tRNA synthetase; Provisional 80.12
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-97  Score=748.61  Aligned_cols=332  Identities=79%  Similarity=1.211  Sum_probs=307.0

Q ss_pred             ceeeeccCCCCCCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHH
Q 016437           57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR  136 (389)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~  136 (389)
                      +|+++.++..+.++.+++.-.+++|||||||||.+|||||+|+|++|++||++++++||||||||+|+++++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~  104 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR  104 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence            34445555666667766666677999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEEcCCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcC
Q 016437          137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ  216 (389)
Q Consensus       137 ~~~a~~lA~GlDp~k~~if~QS~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~  216 (389)
                      +++++|+||||||+|++||+||++++|.||+|+|+|.++++||+||+|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus       105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~  184 (389)
T PLN02886        105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ  184 (389)
T ss_pred             HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999998765445789999999999999999999


Q ss_pred             CcEEeecCcchHHHHHHHHHHHHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCccc
Q 016437          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN  296 (389)
Q Consensus       217 adiVpvG~DQ~qhleLtRdiA~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~  296 (389)
                      +|+||||+||+||+|||||||+|||+.||.+..+++|.+.+++|++|++++++.+++||||+||++|||||+|+++|+|+
T Consensus       185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~  264 (389)
T PLN02886        185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN  264 (389)
T ss_pred             CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence            99999999999999999999999999998655556666667789999999987668999999888899999998789999


Q ss_pred             CCCCHHHHHHHhhhcccCCCCCcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------H
Q 016437          297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG------------------------------V  346 (389)
Q Consensus       297 L~Dspe~I~kKI~kA~TD~~~~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~  346 (389)
                      |+|+||+|++|||+|+||+.+.+++++|++|+++|++.||.+|++.+.+                              +
T Consensus       265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire  344 (389)
T PLN02886        265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV  344 (389)
T ss_pred             ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887654                              9


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 016437          347 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR  388 (389)
Q Consensus       347 r~~~l~~~~~~l~~iL~~Ga~kAr~~A~~tl~~v~~~~G~~~  388 (389)
                      ||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus       345 r~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~  386 (389)
T PLN02886        345 RYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ  386 (389)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999963

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
3n9i_A346 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-67
1i6m_A328 1.7 High Resolution Experimental Phases For Tryptop 7e-67
3prh_A388 Tryptophanyl-Trna Synthetase Val144pro Mutant From 8e-67
1d2r_A326 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl 2e-63
1i6k_A328 1.7 High Resolution Experimental Phases For Tryptop 7e-63
3fi0_A326 Crystal Structure Analysis Of B. Stearothermophilus 7e-63
3sz3_A341 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-60
3fhj_D287 Independent Saturation Of Three Trprs Subsites Gene 1e-53
3fhj_A300 Independent Saturation Of Three Trprs Subsites Gene 4e-52
3fhj_C280 Independent Saturation Of Three Trprs Subsites Gene 3e-51
3fhj_F297 Independent Saturation Of Three Trprs Subsites Gene 5e-51
3fhj_E293 Independent Saturation Of Three Trprs Subsites Gene 8e-51
2el7_A337 Crystal Structure Of Tryptophanyl-Trna Synthetase F 1e-50
3u1v_A338 X-Ray Structure Of De Novo Design Cysteine Esterase 2e-49
3fhj_B292 Independent Saturation Of Three Trprs Subsites Gene 8e-48
2yy5_A348 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-47
3m5w_A322 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-36
2g36_A340 Crystal Structure Of Tryptophanyl-Trna Synthetase ( 7e-36
2a4m_A331 Structure Of Trprs Ii Bound To Atp Length = 331 2e-22
1yi8_B351 Crystal Structure Of Tryptophanyl Trrna Synthetase 2e-21
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 1e-07
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 6e-07
1j1u_A306 Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta 6e-06
3n2y_A314 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 6e-05
2ag6_A314 Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S 1e-04
3p0j_A 690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 1e-04
1zh0_A314 Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy 2e-04
1u7x_A312 Crystal Structure Of A Mutant M. Jannashii Tyrosyl- 2e-04
1zh6_A314 Crystal Structure Of P-Acetylphenylalanine-Trna Syn 3e-04
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/357 (41%), Positives = 199/357 (55%), Gaps = 47/357 (13%)
Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N  
Sbjct: 121 QFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 302
                          IFK+PEP IP AGARVMSL D   KMSKS  +  + I LL DPK 
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 303 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKT----------------K 344
           V+  KIKR  TDS   A + +D  ++   +NLL I   ++G++                K
Sbjct: 228 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 286
Query: 345 GV--------------RYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 387
           G               RY     D A L  V+             TL  VY+A+GF+
Sbjct: 287 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 343
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388 Back     alignment and structure
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326 Back     alignment and structure
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326 Back     alignment and structure
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341 Back     alignment and structure
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337 Back     alignment and structure
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338 Back     alignment and structure
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348 Back     alignment and structure
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322 Back     alignment and structure
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340 Back     alignment and structure
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331 Back     alignment and structure
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 Back     alignment and structure
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314 Back     alignment and structure
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314 Back     alignment and structure
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Tyrosinol, Triclinic Crystal Form 1 Length = 690 Back     alignment and structure
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314 Back     alignment and structure
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312 Back     alignment and structure
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 0.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 0.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 0.0
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 0.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 1e-179
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 1e-165
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-165
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 1e-149
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 1e-141
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 6e-87
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 4e-58
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 2e-85
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 4e-80
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 3e-79
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 4e-67
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 8e-46
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 3e-41
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 1e-40
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 4e-40
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 9e-39
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 2e-35
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 2e-34
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 6e-21
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 2e-18
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 1e-13
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 4e-13
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 4e-12
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 3e-11
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
 Score =  515 bits (1329), Expect = 0.0
 Identities = 151/358 (42%), Positives = 204/358 (56%), Gaps = 45/358 (12%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179

Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
           YG             IFK+PEP IP AGARVMSL D   KMSKS  +  + I LL+    
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227

Query: 304 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTK----------------- 344
           +  KIKR  TDS     + +D  ++   +NLL I   ++G++                  
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287

Query: 345 -------------GVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 389
                          RY     D A L  V+ +GAAKA   A  TL  VY+A+GF+ +
Sbjct: 288 AVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.37
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.33
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.24
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.2
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.11
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.03
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.62
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.57
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 98.28
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 98.14
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 97.9
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 97.74
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 97.72
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 97.67
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 97.55
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 97.48
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 97.23
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 97.15
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 97.01
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 95.75
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 95.18
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 94.91
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 92.47
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 91.2
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 89.13
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 89.12
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 88.54
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 88.22
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 87.07
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 86.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 85.32
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 83.72
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 83.49
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 82.63
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 82.48
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 82.48
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 80.63
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=4.6e-90  Score=695.71  Aligned_cols=296  Identities=49%  Similarity=0.779  Sum_probs=274.5

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016437           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (389)
Q Consensus        78 ~~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q  157 (389)
                      +++|||||+|||.+|||||+|+|++|++||++++|+|+||||||+|++.+++++++++++++++|+||||||+|++||+|
T Consensus        35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q  114 (388)
T 3prh_A           35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ  114 (388)
T ss_dssp             CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred             CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHH
Q 016437          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (389)
Q Consensus       158 S~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA  237 (389)
                      |+|++|+||+|+|+|.++++||+|+++||++.+..  +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus       115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia  192 (388)
T 3prh_A          115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA  192 (388)
T ss_dssp             GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence            99999999999999999999999999999987653  6789999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCC
Q 016437          238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA  317 (389)
Q Consensus       238 ~rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~  317 (389)
                      +|||+.||.            +|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus       193 ~rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~  260 (388)
T 3prh_A          193 ERFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEG  260 (388)
T ss_dssp             HHHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSC
T ss_pred             HHhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCC
Confidence            999999983            59999999987778999998888999999998899999999999999999999999999


Q ss_pred             CcCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHHHHHH
Q 016437          318 GLEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLADGAA  367 (389)
Q Consensus       318 ~~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~~Ga~  367 (389)
                      .++++++++|+++|+++||++|++++.+                              +||+++++|+ +|++||++|++
T Consensus       261 ~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~  339 (388)
T 3prh_A          261 IVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAE  339 (388)
T ss_dssp             CCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred             cccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHH
Confidence            9999999999999999999999887644                              9999999999 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCcc
Q 016437          368 KAADIADATLNNVYQAMGFLR  388 (389)
Q Consensus       368 kAr~~A~~tl~~v~~~~G~~~  388 (389)
                      |||++|++||++||++|||.+
T Consensus       340 kA~~~A~~tl~~v~~~~g~~~  360 (388)
T 3prh_A          340 RANRTANKMLKKMENAMGLGR  360 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999963
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 2e-83
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 3e-42
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 2e-40
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 6e-22
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 9e-19
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  255 bits (653), Expect = 2e-83
 Identities = 145/340 (42%), Positives = 190/340 (55%), Gaps = 45/340 (13%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS      + G
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N             R G 
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167

Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
           +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD    I  KIK   TDS   
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227

Query: 319 LEFDNLERPECNNLLSIYQLISGKTKGV------------------------------RY 348
           + +D   +P  +NLL+IY  +SG++                                 RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287

Query: 349 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 388
              M     LD+VL +GA KA  +A   +  + QAMG  R
Sbjct: 288 HHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 99.97
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 99.95
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.76
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.74
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.26
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 95.55
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 95.29
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 93.75
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 93.44
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 92.75
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 91.72
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 88.7
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 88.06
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 86.96
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 86.38
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 84.36
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 84.25
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 80.18
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.5e-86  Score=650.01  Aligned_cols=295  Identities=49%  Similarity=0.781  Sum_probs=279.8

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHHccCcEEEEEeecccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcC
Q 016437           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (389)
Q Consensus        79 ~~i~sGiqPTG~lHLGnylgai~~~v~lQ~~~~~~i~IaDlhAlt~~~d~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS  158 (389)
                      .|||||+||||.+|||||+|+|++|++||++++++|+||||||+|+..+++++++++++++++|+|||+||++++||+||
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS   81 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGG
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHHhCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEeec
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHHHhccCcHHHHhchhhHHHHHHhhCCCCcccccchhhHHHhhhhhhcCCcEEeecCcchHHHHHHHHHHH
Q 016437          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (389)
Q Consensus       159 ~v~eh~eL~w~L~~~~~~~~L~R~~~~K~k~~~~~~~~~~~gll~YPvLQAADILl~~adiVpvG~DQ~qhleLtRdiA~  238 (389)
                      ++++|.+++|+|+|.++++||+|+++||++.+.  .+++++|+|+||+|||||||+|++|+||||+||+||+|||||||+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~eltRdia~  159 (326)
T d1i6la_          82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG--KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (326)
T ss_dssp             GCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTT--CSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhhhhhhhhhhcccchhhccc--cccCCccccccccccchhHHhcCccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998764  367899999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCcccCCCCHHHHHHHhhhcccCCCCC
Q 016437          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG  318 (389)
Q Consensus       239 rfN~~yg~~~~~~~~~~~~~~f~~P~~ii~~~~~~lpgL~dg~~KMSKS~~~~~s~I~L~Dspe~I~kKI~kA~TD~~~~  318 (389)
                      |||+.||.            .|+.|...+...+++++++.||.+|||||+++++|+|+|+|+|++|++||++|+||+...
T Consensus       160 r~n~~~~~------------~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~a~td~~~~  227 (326)
T d1i6la_         160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT  227 (326)
T ss_dssp             HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred             HhhhccCC------------cccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHhhhccccCC
Confidence            99999984            378888877766688888889999999999988899999999999999999999999999


Q ss_pred             cCcCCCCCCchhHHHHHHHHhcCCCHH------------------------------HHHHHHhcCHHHHHHHHHHHHHH
Q 016437          319 LEFDNLERPECNNLLSIYQLISGKTKG------------------------------VRYEEIMSDSAYLDKVLADGAAK  368 (389)
Q Consensus       319 ~~~~~~~~p~~~nll~i~~~~~~~~~~------------------------------~r~~~l~~~~~~l~~iL~~Ga~k  368 (389)
                      ++++++++|+++|++.+|..+++.+.+                              |||++|++|+ +|++||++|++|
T Consensus       228 ~~~~~~~~p~~~~l~~i~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~-~l~~iL~~Ga~k  306 (326)
T d1i6la_         228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESE-ELDRVLDEGAEK  306 (326)
T ss_dssp             CCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-HHHHHHHHHHHH
T ss_pred             ccccccCCCCccHHHHHHHHcCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCH-HHHHHHHHHHHH
Confidence            999999999999999999999887654                              9999999887 699999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCcc
Q 016437          369 AADIADATLNNVYQAMGFLR  388 (389)
Q Consensus       369 Ar~~A~~tl~~v~~~~G~~~  388 (389)
                      ||++|++||++||++|||.+
T Consensus       307 Ar~~A~~tl~~Vr~~~Gl~r  326 (326)
T d1i6la_         307 ANRVASEMVRKMEQAMGLGR  326 (326)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999975
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure