Citrus Sinensis ID: 016454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MALSASPFPKSLLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHcccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHccccHHHccccccccccccccccHHHHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHccccccccEEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
malsaspfpkslllshqkccflfpqtlvqgklkPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKnkndnnpieplsdslmgesnrarlpefvggfdrdwEVLDTCLNADDLKLVASAYKFLqnrgflpsfgkfnrivlegprdvtptvlksstgleasklspkkwgvsgSSRVALVAFLGGTSFllsqgidirpNLAVILGLALVDAIFLGGVCLAQissywppykrrILVHEAGHLLIAYLMGCPIRGVILDPIVAMqmgiqgqagtQFWDEKMNNELaegrlsgtafdRYSMVLFAGIAAEALIYgeaeggendeNLFRSICVllqpplsmaqMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSST
Flexible Loop (DISEMBL)
MALSASPFPKSLLLSHQKCCFLFPqtlvqgklkpLRTKYLARALKEWQEYEDAVKRKDLARALRflknkndnnpieplsdslmgesNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLksstgleasklspkkwgvsGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVkalesgsslsvVIRRIEEAMSSST
Low Complexity Region (SEG)
MALSASPFPKSLLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSST
Disordered region (IsUnstruct)
***********LLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFL************************LPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTV****************WGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVI***********
Disordered Region (DISOPRED)
********************FLFPQTLV*****************************DLARALRFLK************************************VLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNN*********TAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPP*********ARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRI*EAM****
Disordered Region (DISEMBL)
********PKSLLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSST
Disordered Region (DISPRO)
******************CCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKND*******************L*E**GGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSASPFPKSLLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
359494650	388	PREDICTED: uncharacterized protein LOC10	0.917	0.920	0.766	1e-160
255544586	410	conserved hypothetical protein [Ricinus	0.940	0.892	0.745	1e-158
449444266	403	PREDICTED: uncharacterized protein LOC10	0.989	0.955	0.721	1e-155
224112297	353	predicted protein [Populus trichocarpa]	0.884	0.974	0.759	1e-155
388516525	392	unknown [Medicago truncatula]	0.976	0.969	0.702	1e-153
357451625	390	hypothetical protein MTR_2g066060 [Medic	0.935	0.933	0.729	1e-153
356557024	386	PREDICTED: uncharacterized protein LOC10	0.958	0.966	0.724	1e-151
18405720	389	uncharacterized protein [Arabidopsis tha	0.971	0.971	0.683	1e-149
13605649	389	At1g56180/F14G9_20 [Arabidopsis thaliana	0.971	0.971	0.683	1e-149
297853366	385	hypothetical protein ARALYDRAFT_474687 [	0.958	0.968	0.685	1e-148

>gi|359494650|ref|XP_002263645.2| PREDICTED: uncharacterized protein LOC100261626 [Vitis vinifera] gi|297736143|emb|CBI24181.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/372 (76%), Positives = 312/372 (83%), Gaps = 15/372 (4%)

Query: 24  PQTLV-QGKLKPLRTKY------LARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIE 76
           PQ L  Q KL+P   ++        RAL+EW+EYEDAVK KDLARALRFLK+  + NPIE
Sbjct: 24  PQFLSSQTKLRPFSFRFSLPKNQKPRALREWREYEDAVKEKDLARALRFLKSV-ETNPIE 82

Query: 77  PLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKF 136
           P +DS   +    +        +RDWEVLD CLNADD+KLV SAY FL+NRGFLP+FGK 
Sbjct: 83  PFNDSSSSDLGLVQ-------SERDWEVLDACLNADDMKLVGSAYSFLKNRGFLPNFGKC 135

Query: 137 NRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIR 196
             IVLEG RDVTPTVLK+STGLE SKLSPKKWG+SG S  AL AFLGG S LLS+GIDIR
Sbjct: 136 RNIVLEGSRDVTPTVLKTSTGLEVSKLSPKKWGLSGGSSAALAAFLGGVSLLLSRGIDIR 195

Query: 197 PNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILD 256
           PNLA ILGLA++DA+FLGG CLAQISSYWPPY+RRILVHEAGHLL AYLMGCPIRGVILD
Sbjct: 196 PNLAAILGLAIIDAVFLGGSCLAQISSYWPPYRRRILVHEAGHLLTAYLMGCPIRGVILD 255

Query: 257 PIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGG 316
           PIVAMQMGIQGQAGTQFWDEK+  ELAEGRLSGT FDRY MVLFAGIAAEAL+YGEAEGG
Sbjct: 256 PIVAMQMGIQGQAGTQFWDEKLEKELAEGRLSGTTFDRYCMVLFAGIAAEALVYGEAEGG 315

Query: 317 ENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSV 376
           ENDENLFRSICVLL+PPL++ QMSNQARW+VLQSYNLLKWHKHAH  AVKALESG SLSV
Sbjct: 316 ENDENLFRSICVLLRPPLTIGQMSNQARWSVLQSYNLLKWHKHAHRAAVKALESGGSLSV 375

Query: 377 VIRRIEEAMSSS 388
           VIRRIEEAMSSS
Sbjct: 376 VIRRIEEAMSSS 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544586|ref|XP_002513354.1| conserved hypothetical protein [Ricinus communis] gi|223547262|gb|EEF48757.1| conserved hypothetical protein [Ricinus communis]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/377 (74%), Positives = 310/377 (82%), Gaps = 11/377 (2%)

Query: 21  FLFPQTLVQGKLKPLRTK---YLARALKEWQEYEDAVKRKDLARALRFLKNK-------N 70
           FL    L  GK+   R K    + RALKEW EYEDAVKRKDLA ALRFLK++       N
Sbjct: 16  FLCSPNLFSGKISIFRNKKIKIITRALKEWWEYEDAVKRKDLAGALRFLKSRETETNSDN 75

Query: 71  DNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFL 130
            +N  E ++         + L  F G   RDWEVLDTCLNADD++LV SAY FL+NRG L
Sbjct: 76  KDNSAETMNGCSSTGFGISDLGLFEGS-QRDWEVLDTCLNADDMRLVGSAYGFLKNRGLL 134

Query: 131 PSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLS 190
           P+FGKF  IVLEGPRDVTP V KSSTGLE SK +PKKWG+SG SR A++AFLGG SFL+S
Sbjct: 135 PNFGKFTNIVLEGPRDVTPAVFKSSTGLEVSKFAPKKWGLSGGSRFAMIAFLGGASFLVS 194

Query: 191 QGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPI 250
           QGI+IRPNLAVILGLA +D+IFLGG CLAQISSYWPP+KRRILVHEAGHLL+AYLMGCPI
Sbjct: 195 QGIEIRPNLAVILGLAFMDSIFLGGTCLAQISSYWPPFKRRILVHEAGHLLVAYLMGCPI 254

Query: 251 RGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY 310
           RGVILDPIV MQMGIQGQAGTQFWDEK++NELA+GRLSGT FDRY MVLFAGIAAE L+Y
Sbjct: 255 RGVILDPIVMMQMGIQGQAGTQFWDEKLSNELADGRLSGTTFDRYCMVLFAGIAAETLVY 314

Query: 311 GEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALES 370
           GEAEGGENDENLFRSI VLLQPPLS+ QMSNQARW+VLQSYNLLKW +HAH  AVKALES
Sbjct: 315 GEAEGGENDENLFRSISVLLQPPLSVNQMSNQARWSVLQSYNLLKWQRHAHRAAVKALES 374

Query: 371 GSSLSVVIRRIEEAMSS 387
           GSSLSVVIRRIEEAMSS
Sbjct: 375 GSSLSVVIRRIEEAMSS 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444266|ref|XP_004139896.1| PREDICTED: uncharacterized protein LOC101213430 [Cucumis sativus] gi|449493060|ref|XP_004159181.1| PREDICTED: uncharacterized LOC101213430 [Cucumis sativus]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/395 (72%), Positives = 327/395 (82%), Gaps = 10/395 (2%)

Query: 3   LSASPFPKSLLLSHQKCCFLFPQTLVQGKLKPL--------RTKYLARALKEWQEYEDAV 54
           L +S  P+S L  H    F F Q    G  K          R   L+RAL+EWQ+YE+AV
Sbjct: 10  LISSSLPQSQLF-HYPIPFHFQQKNPNGINKYFHLERHHHQRLLPLSRALREWQDYEEAV 68

Query: 55  KRKDLARALRFLKNKNDNNPIEPLSDSLMGESNRARLPEF-VGGFDRDWEVLDTCLNADD 113
           KRKDLA ALRFL++ + ++ IEP+ DS    S  + +    + G++RDWEVLDTCLNADD
Sbjct: 69  KRKDLAEALRFLESFDRDSAIEPIKDSAPAGSAPSAIRNLRLSGWERDWEVLDTCLNADD 128

Query: 114 LKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGS 173
           +KLVA+AY+FL++RGFLP+FGK   IVLEG RDVTP+VL+ +TGLE SKLSPKKWG+SGS
Sbjct: 129 MKLVANAYRFLKDRGFLPNFGKCRNIVLEGRRDVTPSVLELTTGLEVSKLSPKKWGLSGS 188

Query: 174 SRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRIL 233
           SR AL+AFLGGTSFLLSQ IDIRPNL  +LGLA +D+I LGG CLAQISSYWPPY+RRIL
Sbjct: 189 SRYALIAFLGGTSFLLSQDIDIRPNLLALLGLAFLDSILLGGTCLAQISSYWPPYRRRIL 248

Query: 234 VHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFD 293
           VHEAGHLL AYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKM + LAEGRL GT+FD
Sbjct: 249 VHEAGHLLTAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMASNLAEGRLDGTSFD 308

Query: 294 RYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNL 353
           RY MVLFAGIAAEAL+YGEAEGGENDENLFRSICVLLQPPLS+AQMSNQARWAVLQSYNL
Sbjct: 309 RYCMVLFAGIAAEALVYGEAEGGENDENLFRSICVLLQPPLSVAQMSNQARWAVLQSYNL 368

Query: 354 LKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSS 388
           LKWHKHAH  AVKA+ESGSSLSVVIR+IE+A+S++
Sbjct: 369 LKWHKHAHQVAVKAMESGSSLSVVIRKIEDALSTN 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112297|ref|XP_002316146.1| predicted protein [Populus trichocarpa] gi|222865186|gb|EEF02317.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/353 (75%), Positives = 307/353 (86%), Gaps = 9/353 (2%)

Query: 43  ALKEWQEYEDAVKRKDLARALRFLKNKNDNNPIEPLSDSLMGE-----SNRARLPEFVGG 97
           AL+EW+EYEDAVKRKDLARALRFLK+K      + L+DS+ G      + R+ L + +G 
Sbjct: 2   ALREWKEYEDAVKRKDLARALRFLKSKETQTNNDSLADSVNGSFSNDSATRSGLGD-LGL 60

Query: 98  FD---RDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKS 154
           FD   RDWEVLDTCLNADD++LV+SAY FL+NRGFLPSFGKF+ IVLEGPR+VTP +L+S
Sbjct: 61  FDVLERDWEVLDTCLNADDMRLVSSAYGFLKNRGFLPSFGKFSNIVLEGPREVTPILLQS 120

Query: 155 STGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLG 214
           STGLE +KLSPKKWG +G S +  +AF GG +FL+ +GIDIR NLA ILGLA +D+IFLG
Sbjct: 121 STGLEVTKLSPKKWGATGISSLVFIAFTGGANFLVDRGIDIRVNLAAILGLAFLDSIFLG 180

Query: 215 GVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFW 274
           G CLAQISSYWPP KRRILVHEAGHLL+AYLMGCP+RGVILDP+VAMQMG QGQAGTQFW
Sbjct: 181 GACLAQISSYWPPNKRRILVHEAGHLLVAYLMGCPVRGVILDPMVAMQMGTQGQAGTQFW 240

Query: 275 DEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPL 334
           DEK++NELAEG+LSGT+FDRY MVLFAGIAAEAL+YGEAEGGENDENLFRS CVLLQPPL
Sbjct: 241 DEKLSNELAEGKLSGTSFDRYCMVLFAGIAAEALVYGEAEGGENDENLFRSTCVLLQPPL 300

Query: 335 SMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSS 387
           S+AQMSNQARW+VLQS+NLLKWH+ AH  AVKALESG SLSVVIRRIEEAMSS
Sbjct: 301 SVAQMSNQARWSVLQSFNLLKWHRDAHRAAVKALESGGSLSVVIRRIEEAMSS 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516525|gb|AFK46324.1| unknown [Medicago truncatula]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/397 (70%), Positives = 319/397 (80%), Gaps = 17/397 (4%)

Query: 1   MALSASP-----FPKSLLLSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEYEDAVK 55
           M +S+SP     FP   L S Q     F +T       PLR + L  A KEW++YE+AVK
Sbjct: 1   MTMSSSPSHLQIFPH-FLTSPQ-----FSRTFPPATRNPLRLRPLT-AFKEWRDYEEAVK 53

Query: 56  RKDLARALRFLKNKNDNNPI--EPLSD--SLMGESNRARLPEF-VGGFDRDWEVLDTCLN 110
           RKDLA AL FLK+      +  EP +D  SL+ E  R+R  E  + G  RDWEVLDTC+N
Sbjct: 54  RKDLAGALSFLKSLETEQRVTAEPFTDGDSLVAELTRSRFRELEMFGPQRDWEVLDTCMN 113

Query: 111 ADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGV 170
           AD++KLVA+AYKFL++RGFLP+FGK   IVLEGPR+VTP VL SSTGLE +KL+PKKWG+
Sbjct: 114 ADNMKLVANAYKFLKDRGFLPNFGKCRNIVLEGPRNVTPDVLSSSTGLEVTKLAPKKWGL 173

Query: 171 SGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKR 230
           S  S  AL AF GG SFL+SQGID+RPNLAVILGLA  D+IFLGG CLAQISSYWPPY+R
Sbjct: 174 SDGSSTALFAFFGGVSFLISQGIDLRPNLAVILGLAFADSIFLGGTCLAQISSYWPPYRR 233

Query: 231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGT 290
           RIL+HEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEK+ ++LAEGRL G+
Sbjct: 234 RILIHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKVASDLAEGRLDGS 293

Query: 291 AFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQS 350
           AFDRY MVLFAGIAAEALIYGEAEGGENDENLFRS+C+LL+PPLS+A+MSNQARW+VLQS
Sbjct: 294 AFDRYCMVLFAGIAAEALIYGEAEGGENDENLFRSVCLLLEPPLSVAEMSNQARWSVLQS 353

Query: 351 YNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSS 387
           YNLLKWHK AH  AVKALESG SLS VIRRIEE + S
Sbjct: 354 YNLLKWHKAAHQAAVKALESGGSLSTVIRRIEETLYS 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451625|ref|XP_003596089.1| hypothetical protein MTR_2g066060 [Medicago truncatula] gi|355485137|gb|AES66340.1| hypothetical protein MTR_2g066060 [Medicago truncatula]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/370 (72%), Positives = 308/370 (83%), Gaps = 6/370 (1%)

Query: 23  FPQTLVQGKLKPLRTKYLARALKEWQEYEDAVKRKDLARALRFLKNKNDNNPI--EPLSD 80
           F +T       PLR + L  A KEW++YE+AVKRKDLA AL FLK+      +  EP +D
Sbjct: 20  FSRTFPPATRNPLRLRPLT-AFKEWRDYEEAVKRKDLAGALSFLKSLETEQRVTAEPFTD 78

Query: 81  --SLMGESNRARLPEF-VGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPSFGKFN 137
             SL+ E  R+R  E  + G  RDWEVLDTC+NAD++KLVA+AYKFL++RGFLP+FGK  
Sbjct: 79  GDSLVAELTRSRFRELEMFGPQRDWEVLDTCMNADNMKLVANAYKFLKDRGFLPNFGKCR 138

Query: 138 RIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRP 197
            IVLEGPR+VTP VL SSTGLE +KL+PKKWG+S  S  AL AF GG SFL+SQGID+RP
Sbjct: 139 NIVLEGPRNVTPDVLSSSTGLEVTKLAPKKWGLSDGSSTALFAFFGGVSFLISQGIDLRP 198

Query: 198 NLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDP 257
           NLAVILGLA  D+IFLGG CLAQISSYWPPY+RRIL+HEAGHLLIAYLMGCPIRGVILDP
Sbjct: 199 NLAVILGLAFADSIFLGGTCLAQISSYWPPYRRRILIHEAGHLLIAYLMGCPIRGVILDP 258

Query: 258 IVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGE 317
           IVAMQMGIQGQAGTQFWDEK+ ++LAEGRL G+AFDRY MVLFAGIAAEALIYGEAEGGE
Sbjct: 259 IVAMQMGIQGQAGTQFWDEKVASDLAEGRLDGSAFDRYCMVLFAGIAAEALIYGEAEGGE 318

Query: 318 NDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVV 377
           NDENLFRS+C+LL+PPLS+A+MSNQARW+VLQSYNLLKWHK AH  AVKALESG SLS V
Sbjct: 319 NDENLFRSVCLLLEPPLSVAEMSNQARWSVLQSYNLLKWHKAAHQAAVKALESGGSLSTV 378

Query: 378 IRRIEEAMSS 387
           IRRIEE + S
Sbjct: 379 IRRIEETLYS 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557024|ref|XP_003546818.1| PREDICTED: uncharacterized protein LOC100800880 [Glycine max]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/381 (72%), Positives = 303/381 (79%), Gaps = 8/381 (2%)

Query: 8   FPKSLLLSHQKCCFLFPQTLVQG--KLKPLRTKYLARALKEWQEYEDAVKRKDLARALRF 65
           FP   +  H    FL P     G  +  P  T+   RA +EW+EYE+AVKRKDLA ALRF
Sbjct: 7   FPNLQISPH----FLAPPPFSLGFSRTFPAATRVRRRAFREWREYEEAVKRKDLAGALRF 62

Query: 66  LKNKNDNNPIEPLSDSLMGESNRARLPEFVG-GFDRDWEVLDTCLNADDLKLVASAYKFL 124
           LK+     P+     S   ES R R  E    G  RDWEVLDTCLNADD+KLVA+AY+FL
Sbjct: 63  LKSLESEQPLVN-GGSPSSESTRLRFGELERFGPQRDWEVLDTCLNADDMKLVANAYRFL 121

Query: 125 QNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSGSSRVALVAFLGG 184
           ++RGFLP+FGK   IVLEGPR VTP VL SSTGLE +KL+PKKWG+S  S + LVAFLGG
Sbjct: 122 RDRGFLPNFGKCRNIVLEGPRKVTPDVLSSSTGLEVTKLAPKKWGLSDGSSIVLVAFLGG 181

Query: 185 TSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAY 244
            SFL+SQGID+RPNLAVILGLA  DAI LGG CLAQISSYWPPY+RRILVHEAGHLL AY
Sbjct: 182 VSFLISQGIDLRPNLAVILGLAAADAILLGGTCLAQISSYWPPYRRRILVHEAGHLLTAY 241

Query: 245 LMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIA 304
           LMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEK+ N+LAEGRL GTAFDRY MVLFAGIA
Sbjct: 242 LMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKVANDLAEGRLDGTAFDRYCMVLFAGIA 301

Query: 305 AEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEA 364
           AEAL+YGEAEGGENDENLFR IC+LL PPLS A+MSNQARWAVLQSYNLLKWH+ AH  A
Sbjct: 302 AEALVYGEAEGGENDENLFRGICLLLDPPLSTAEMSNQARWAVLQSYNLLKWHRAAHRAA 361

Query: 365 VKALESGSSLSVVIRRIEEAM 385
           VKALESG SLSVVIR IEE M
Sbjct: 362 VKALESGDSLSVVIRSIEETM 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405720|ref|NP_564711.1| uncharacterized protein [Arabidopsis thaliana] gi|12321763|gb|AAG50923.1|AC069159_24 hypothetical protein [Arabidopsis thaliana] gi|24111289|gb|AAN46768.1| At1g56180/F14G9_20 [Arabidopsis thaliana] gi|332195234|gb|AEE33355.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/398 (68%), Positives = 319/398 (80%), Gaps = 20/398 (5%)

Query: 1   MALSASPFPKSLLLS---HQKCCFLFP--QTLVQGKLKPLRTKYLAR--ALKEWQEYEDA 53
           MALS S  P    LS    ++  FL P  Q+LV G +   R   L R  AL+EW+EYEDA
Sbjct: 1   MALSPSSPPCLRSLSPSFSRQIGFLVPRVQSLVFGSV---RKHELRRPSALREWREYEDA 57

Query: 54  VKRKDLARALRFLK---NKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLN 110
           VKRKDLA ALRFLK   N    + +E +  + +       L       +RDW+VLD CLN
Sbjct: 58  VKRKDLAGALRFLKSIENDEQRDSVESIVTAKLSGLGALEL-------ERDWQVLDACLN 110

Query: 111 ADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGV 170
           ADD++LV SA++FL+ RG L +FGKF  IVLEG R+VTPTVLKS+TGLE +KLSPKKWG+
Sbjct: 111 ADDMRLVGSAFRFLKERGLLANFGKFTSIVLEGTREVTPTVLKSATGLEVTKLSPKKWGL 170

Query: 171 SGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKR 230
           SG S +AL A LGG S+LLSQ ID+RPNLAVILGLA +D++FLGG CLAQ+S YWPP+KR
Sbjct: 171 SGGSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYLDSVFLGGTCLAQVSCYWPPHKR 230

Query: 231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGT 290
           RI+VHEAGHLL+AYLMGCPIRGVILDP+VAMQMG+QGQAGTQFWD+KM +E+AEGRLSG+
Sbjct: 231 RIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESEIAEGRLSGS 290

Query: 291 AFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQS 350
           +FDRYSMVLFAGIAAEAL+YGEAEGGENDENLFRSI VLL+PPLS+AQMSNQARW+VLQS
Sbjct: 291 SFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQARWSVLQS 350

Query: 351 YNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSS 388
           YNLLKWHK AH  AV+AL+ GS LS+VIRRIEEAMSSS
Sbjct: 351 YNLLKWHKAAHRAAVEALQVGSPLSIVIRRIEEAMSSS 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13605649|gb|AAK32818.1|AF361805_1 At1g56180/F14G9_20 [Arabidopsis thaliana]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/398 (68%), Positives = 319/398 (80%), Gaps = 20/398 (5%)

Query: 1   MALSASPFPKSLLLS---HQKCCFLFP--QTLVQGKLKPLRTKYLAR--ALKEWQEYEDA 53
           MALS S  P    LS    ++  FL P  Q+LV G +   R   L R  AL+EW+EYEDA
Sbjct: 1   MALSPSSPPCLRSLSPFFSRQIGFLVPRVQSLVFGSV---RKHELRRPSALREWREYEDA 57

Query: 54  VKRKDLARALRFLK---NKNDNNPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLN 110
           VKRKDLA ALRFLK   N    + +E +  + +       L       +RDW+VLD CLN
Sbjct: 58  VKRKDLAGALRFLKSIENDEQRDSVESIVTAKLSGLGALEL-------ERDWQVLDACLN 110

Query: 111 ADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGV 170
           ADD++LV SA++FL+ RG L +FGKF  IVLEG R+VTPTVLKS+TGLE +KLSPKKWG+
Sbjct: 111 ADDMRLVGSAFRFLKERGLLANFGKFTSIVLEGTREVTPTVLKSATGLEVTKLSPKKWGL 170

Query: 171 SGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKR 230
           SG S +AL A LGG S+LLSQ ID+RPNLAVILGLA +D++FLGG CLAQ+S YWPP+KR
Sbjct: 171 SGGSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYLDSVFLGGPCLAQVSCYWPPHKR 230

Query: 231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGT 290
           RI+VHEAGHLL+AYLMGCPIRGVILDP+VAMQMG+QGQAGTQFWD+KM +E+AEGRLSG+
Sbjct: 231 RIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESEIAEGRLSGS 290

Query: 291 AFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQS 350
           +FDRYSMVLFAGIAAEAL+YGEAEGGENDENLFRSI VLL+PPLS+AQMSNQARW+VLQS
Sbjct: 291 SFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQARWSVLQS 350

Query: 351 YNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSS 388
           YNLLKWHK AH  AV+AL+ GS LS+VIRRIEEAMSSS
Sbjct: 351 YNLLKWHKAAHRAAVEALQVGSPLSIVIRRIEEAMSSS 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853366|ref|XP_002894564.1| hypothetical protein ARALYDRAFT_474687 [Arabidopsis lyrata subsp. lyrata] gi|297340406|gb|EFH70823.1| hypothetical protein ARALYDRAFT_474687 [Arabidopsis lyrata subsp. lyrata]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/397 (68%), Positives = 321/397 (80%), Gaps = 24/397 (6%)

Query: 1   MALSASPFP--KSLL-LSHQKCCFLFP--QTLVQGKLKPLRTKYLAR--ALKEWQEYEDA 53
           MALS S  P  +SL   S +   FL P  Q+L  G +   R   L R  AL+EW+EYEDA
Sbjct: 1   MALSPSSPPCLRSLSPFSRRIGGFLVPRVQSLAFGSV---RRHELRRPSALREWREYEDA 57

Query: 54  VKRKDLARALRFLK---NKNDNNPIEPLSDSLMGESNRARLPEFVGGFD--RDWEVLDTC 108
           V+RKDLA ALRFLK   N  + + +E +  + +           +GG +  RDW+VLD C
Sbjct: 58  VRRKDLAGALRFLKSIENDEERDAVESIVTAKLSG---------LGGLELERDWQVLDAC 108

Query: 109 LNADDLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKW 168
           LNADD++LV SA++FL+ RG L +FGKF+ IVLEG R+VTPTVLKS+TGLE +KLSPKKW
Sbjct: 109 LNADDMRLVGSAFRFLKERGLLANFGKFSSIVLEGTREVTPTVLKSATGLEVTKLSPKKW 168

Query: 169 GVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPY 228
           G+SG S +AL AFLGG S+LLSQ ID+RPNLAVILGLA +D++FLGG CLAQ+S YWPP+
Sbjct: 169 GLSGGSSIALAAFLGGVSYLLSQEIDVRPNLAVILGLAYMDSVFLGGTCLAQVSCYWPPH 228

Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
           KRRI+VHEAGHLL+AYLMGCPIRGVILDPIVAMQMG+QGQAGTQFWD+KM +E+AEGRLS
Sbjct: 229 KRRIVVHEAGHLLVAYLMGCPIRGVILDPIVAMQMGVQGQAGTQFWDQKMESEIAEGRLS 288

Query: 289 GTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVL 348
           G++FDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSI VLL+PPLS+AQMSNQARW+VL
Sbjct: 289 GSSFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQARWSVL 348

Query: 349 QSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAM 385
           QSYNLLKWHK AH  AV+AL+ GS LS+VIRRIEEAM
Sbjct: 349 QSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRIEEAM 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2011861	389	AT1G56180 "AT1G56180" [Arabido	0.976	0.976	0.684	5.8e-137
TAIR|locus:2181221	341	AT5G27290 [Arabidopsis thalian	0.719	0.821	0.290	1e-22
TAIR|locus:2052474	332	AT2G21960 [Arabidopsis thalian	0.766	0.897	0.278	7.9e-19
TAIR|locus:2199471	223	AT1G54680 "AT1G54680" [Arabido	0.395	0.690	0.220	2.1e-07

TAIR|locus:2011861 AT1G56180 "AT1G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 271/396 (68%), Positives = 323/396 (81%)

Query:     1 MALSASPFP--KSLLLSHQKCC-FLFP--QTLVQGKLKPLRTKYLARALKEWQEYEDAVK 55
             MALS S  P  +SL  S  +   FL P  Q+LV G ++    +  + AL+EW+EYEDAVK
Sbjct:     1 MALSPSSPPCLRSLSPSFSRQIGFLVPRVQSLVFGSVRKHELRRPS-ALREWREYEDAVK 59

Query:    56 RKDLARALRFLKN-KNDN--NPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNAD 112
             RKDLA ALRFLK+ +ND   + +E +  + +       L       +RDW+VLD CLNAD
Sbjct:    60 RKDLAGALRFLKSIENDEQRDSVESIVTAKLSGLGALEL-------ERDWQVLDACLNAD 112

Query:   113 DLKLVASAYKFLQNRGFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKWGVSG 172
             D++LV SA++FL+ RG L +FGKF  IVLEG R+VTPTVLKS+TGLE +KLSPKKWG+SG
Sbjct:   113 DMRLVGSAFRFLKERGLLANFGKFTSIVLEGTREVTPTVLKSATGLEVTKLSPKKWGLSG 172

Query:   173 SSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRI 232
              S +AL A LGG S+LLSQ ID+RPNLAVILGLA +D++FLGG CLAQ+S YWPP+KRRI
Sbjct:   173 GSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYLDSVFLGGTCLAQVSCYWPPHKRRI 232

Query:   233 LVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAF 292
             +VHEAGHLL+AYLMGCPIRGVILDP+VAMQMG+QGQAGTQFWD+KM +E+AEGRLSG++F
Sbjct:   233 VVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESEIAEGRLSGSSF 292

Query:   293 DRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYN 352
             DRYSMVLFAGIAAEAL+YGEAEGGENDENLFRSI VLL+PPLS+AQMSNQARW+VLQSYN
Sbjct:   293 DRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQARWSVLQSYN 352

Query:   353 LLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSS 388
             LLKWHK AH  AV+AL+ GS LS+VIRRIEEAMSSS
Sbjct:   353 LLKWHKAAHRAAVEALQVGSPLSIVIRRIEEAMSSS 388

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2181221 AT5G27290 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 87/299 (29%), Positives = 143/299 (47%)

Query:   103 EVLDTCLNADDLKLVASAYKFLQNR-GFLPSFGKFNRIVLEGPRDVTPTVLKSSTGLEAS 161
             E +D+ L++ D +   S  K LQ +   L  FG   ++     R  T   LK +    AS
Sbjct:    47 EQVDSKLSSGDERAALSLVKDLQGKPDGLRCFGAARQVP---QRLYTLEELKLNGINAAS 103

Query:   162 KLSPKKWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNLAVILGLALV-----DAI-FLGG 215
              LSP    +    R   +A + G   +  +  D+       L L  +     D + F GG
Sbjct:   104 LLSPTDTTLGSIERNLQIAAVSG-GIVAWKAFDLSSQQLFFLTLGFMFLWTLDLVSFNGG 162

Query:   216 VCLAQISS----YWPPYKRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQM--GIQGQA 269
             +    + +    +   Y  R++ HEAGH L+AYL+G   RG  L  + A+Q    +  QA
Sbjct:   163 IGSLVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQA 222

Query:   270 GTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVL 329
             G+ F D +   E+  G++S T  +R+S +  AG+A E L+YG AEGG +D +    +   
Sbjct:   223 GSAFVDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKS 282

Query:   330 LQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSSS 388
             L    +  +  +Q RW+VL +  LL+ H+ A  +  +A+  G S+   I+ IE+++  S
Sbjct:   283 LG--FTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSCIQIIEDSIDPS 339

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2052474 AT2G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 89/320 (27%), Positives = 141/320 (44%)

Query:    73 NPIEPLSDSLMGESNRARLPEFVGGFDRDWEVLDTCLNADDLKLVASAYKFLQNRGFLPS 132
             +P  PL  + +  S+ +  P    GFD     L++ +N  D   V  A   L   G+   
Sbjct:    26 HPRNPLIQAAVSPSSSSSSPTASSGFDLS--SLESAINKKDSNGVKEALDKLSEEGWAKK 83

Query:   133 FGKFNRIVLEGP--RDVTPTVLKSSTGLEASKLSPKK---WGVSGSSR-VALVA--FLGG 184
             +     +       R++T   +K++  L    +       + V GS+  +A++A    G 
Sbjct:    84 WSSQPYLSRRTTSLRELTTLGIKNAETLAIPSVRNDAAFLFTVVGSTGFIAVLAGQLPGD 143

Query:   185 TSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAY 244
               F +   +    +L V+L +  V    L    ++  S+++P Y+ RI  HEA H L+AY
Sbjct:   144 WGFFVPYLVG-SISL-VVLAVGSVSPGLLQAA-ISGFSTFFPDYQERIAAHEAAHFLVAY 200

Query:   245 LMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIA 304
             L+G PI G  LD          G+      DE++   +  G+L     DR + V  AG+A
Sbjct:   201 LIGLPILGYSLDI---------GKEHVNLIDERLAKLIYSGKLDSKELDRLAAVAMAGLA 251

Query:   305 AEALIYGEAEGGENDENLFRSICVLLQPPLSMAQMSNQARWAVLQSYNLLKWHKHAHLEA 364
             AE L Y +  G   D    +      QP +S  Q  N  RWAVL S +LLK +K  H   
Sbjct:   252 AEGLKYDKVIGQSADLFSLQRFINRSQPKISNEQQQNLTRWAVLYSASLLKNNKTIHEAL 311

Query:   365 VKALESGSSLSVVIRRIEEA 384
             + A+   +S+   I+ IE A
Sbjct:   312 MAAMSKNASVLECIQTIETA 331

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2199471 AT1G54680 "AT1G54680" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 38/172 (22%), Positives = 78/172 (45%)

Query:   232 ILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAG----------------TQFWD 275
             ++ HE+GH L+ YL+G   R   +  + A++  +    G                 Q   
Sbjct:    51 VVQHESGHFLVGYLLGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMK 110

Query:   276 EKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVLLQPPLS 335
             + ++ ++ +G +S    + +S V+  G+  E +++G +EG  +D  + +   VL     +
Sbjct:   111 DDVDGQMNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSD--IVKLNDVLRWLGFT 168

Query:   336 MAQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLSVVIRRIEEAMSS 387
              ++     +WAV  + +LL  HK A +   + +     +S  I  IE A+S+
Sbjct:   169 ESEKEAHIKWAVSNTVSLLHSHKEARVSLAETMAKAKPISTCIEAIESAIST 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      389       389   0.00093  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  248 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.95u 0.09s 30.04t   Elapsed:  00:00:01
  Total cpu time:  29.95u 0.09s 30.04t   Elapsed:  00:00:01
  Start:  Sat May 11 08:00:59 2013   End:  Sat May 11 08:01:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam01434	212	pfam01434, Peptidase_M41, Peptidase family M41	0.001

>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 24/100 (24%)

Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQGQAG--TQFWDEKMNNELAE 284
           KR +  HEAGH L+  L+    P+  V + P        +GQA   TQF  E       E
Sbjct: 28  KRLVAYHEAGHALVGLLLPGADPVHKVTIIP--------RGQALGYTQFLPE-------E 72

Query: 285 GRLSGTAFDRYSM--VLFAGIAAEALIYGEAE---GGEND 319
            +L  T     +   V   G AAE LI+G+ E   G  ND
Sbjct: 73  DKLLYTKSQLLARIDVALGGRAAEELIFGDDEVTTGASND 112

Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.96
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.96
CHL00176	638	ftsH cell division protein; Validated	99.94
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.94
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.94
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.92
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.88
CHL00206	2281	ycf2 Ycf2; Provisional	98.79
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	96.99
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	96.54
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	96.4
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.19
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	96.17
PF13398	200	Peptidase_M50B: Peptidase M50B-like	96.08
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	95.93
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	95.74
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	94.94
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	94.22
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	92.31
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	89.39
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	83.16
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	80.52

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.3e-30  Score=264.90  Aligned_cols=157  Identities=20%  Similarity=0.202  Sum_probs=134.8

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      .+-|||+||.+++.+  .++++.|+.+||||+|||+||+.+.  .|++|+||.|     ||.  +.|.+.+.|++|++  
T Consensus       536 ~akDrIlMG~ERks~--~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImP-----RG~--sLG~t~~LPe~D~~--  604 (752)
T KOG0734|consen  536 FAKDRILMGPERKSM--VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMP-----RGP--SLGHTSQLPEKDRY--  604 (752)
T ss_pred             hhhhheeeccccccc--ccChhhhhhhhhhccCceEEEeecCCCccccceeecc-----CCc--cccceeecCccchh--
Confidence            579999999987544  4689999999999999999999997  5999999999     885  78999999988765  


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhCC---CcchHhHHHHHH----HHHHHhCCC----------------c---cHH
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYGE---AEGGENDENLFR----SICVLLQPP----------------L---SMA  337 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfGe---atGgsnDL~~ar----~m~~~lG~~----------------~---s~~  337 (389)
                        .+|+.++..++-|+||||+||+|+||.   ++|+++|+++++    +|++.+|++                +   ++.
T Consensus       605 --~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~  682 (752)
T KOG0734|consen  605 --SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQE  682 (752)
T ss_pred             --hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHH
Confidence              579999999999999999999999996   479999999985    666666631                1   222


Q ss_pred             HHH----HHHHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcHH
Q 016454          338 QMS----NQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLS  375 (389)
Q Consensus       338 ~id----~~vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL~  375 (389)
                      .||    +.++.+|+||+.||+.|.+.+++||++|+++|||+
T Consensus       683 lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~  724 (752)
T KOG0734|consen  683 LIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLD  724 (752)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            345    44567999999999999999999999999999994

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.96  E-value=4.5e-29  Score=232.85  Aligned_cols=157  Identities=25%  Similarity=0.314  Sum_probs=121.4

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      -++|+|++|.....  ..+++++|+|+||||||||+|+++++  .||.++||+|     +|.  .+|++...|..++.  
T Consensus         7 ~a~drv~~G~~~~~--~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~p-----rg~--~~G~~~~~~~~~~~--   75 (213)
T PF01434_consen    7 EAIDRVLMGPEKKS--RKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVP-----RGS--ALGFTQFTPDEDRY--   75 (213)
T ss_dssp             HHHHHHHCCSCCTT--S---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESST-----TCC--CCHCCEECHHTT-S--
T ss_pred             HHHHHHhcCcCcCC--CCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEec-----CCC--cceeEEeccchhcc--
Confidence            37999999987422  35689999999999999999999998  6999999999     774  55666666654432  


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhC--C-CcchHhHHHHHHHH----HHHhCC-------C----------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYG--E-AEGGENDENLFRSI----CVLLQP-------P----------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfG--e-atGgsnDL~~ar~m----~~~lG~-------~----------------  333 (389)
                        ..|++++.+.++|+|||||||+++||  + ++|+++|+++|+.+    +..+|+       .                
T Consensus        76 --~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~  153 (213)
T PF01434_consen   76 --IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWN  153 (213)
T ss_dssp             --S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---
T ss_pred             --cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccccccccccccc
Confidence              36999999999999999999999999  4 57889999998755    333332       0                


Q ss_pred             ----cc---HHHHH----HHHHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcHH
Q 016454          334 ----LS---MAQMS----NQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLS  375 (389)
Q Consensus       334 ----~s---~~~id----~~vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL~  375 (389)
                          ++   ...++    ..++.+|.+|++||++|++.+++||++|+++++|+
T Consensus       154 ~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~  206 (213)
T PF01434_consen  154 SRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLS  206 (213)
T ss_dssp             EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEE
T ss_pred             ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeC
Confidence                11   12344    44567999999999999999999999999999983

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>CHL00176 ftsH cell division protein; Validated

Probab=99.94  E-value=1.6e-26  Score=246.35  Aligned_cols=164  Identities=19%  Similarity=0.234  Sum_probs=133.7

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      .++|++++|....   ...++++|++|||||||||+|+++++  +||+++||+|     ||.  ++|+++..|+.+++  
T Consensus       418 ~Ai~rv~~g~~~~---~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~p-----rg~--~~G~~~~~p~~~~~--  485 (638)
T CHL00176        418 TAIDRVIAGLEGT---PLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIP-----RGQ--AKGLTWFTPEEDQS--  485 (638)
T ss_pred             HHHHHHHhhhccC---ccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEee-----cCC--CCCceEecCCcccc--
Confidence            4689999997632   23578999999999999999999997  7999999999     773  67888888876554  


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhCC---CcchHhHHHHHHH----HHHHhCCC-----------------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYGE---AEGGENDENLFRS----ICVLLQPP-----------------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfGe---atGgsnDL~~ar~----m~~~lG~~-----------------------  333 (389)
                        .+|+.++.+.++++|||||||+++||+   ++|++||+++|+.    |+..+|+.                       
T Consensus       486 --~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~  563 (638)
T CHL00176        486 --LVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQR  563 (638)
T ss_pred             --cccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCccccccccccc
Confidence              479999999999999999999999995   5799999999864    44444431                       


Q ss_pred             ---cc---HHHHHHH----HHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHH
Q 016454          334 ---LS---MAQMSNQ----ARWAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEE  383 (389)
Q Consensus       334 ---~s---~~~id~~----vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~  383 (389)
                         ++   ..++|.+    ++.||.+|++||++|++.+++||++|+++|||  +++.++++.
T Consensus       564 ~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~  625 (638)
T CHL00176        564 NSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNS  625 (638)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhh
Confidence               12   2335544    56799999999999999999999999999999  556677765

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.94  E-value=2.8e-26  Score=244.39  Aligned_cols=165  Identities=20%  Similarity=0.230  Sum_probs=132.2

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      -++|+|.+|...  +...+++++|+++||||+|||+|+++++  +||+++||+|     ||.  ++|+++..|+.++.  
T Consensus       387 ~a~~~v~~g~~~--~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~p-----rg~--~~g~~~~~~~~~~~--  455 (644)
T PRK10733        387 KAKDKIMMGAER--RSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIP-----RGR--ALGVTFFLPEGDAI--  455 (644)
T ss_pred             HHHHHHhccccc--ccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEec-----cCC--CcceeEECCCcccc--
Confidence            468999998753  2224678999999999999999999997  7999999999     773  67888888865543  


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhCC---CcchHhHHHHHHH----HHHHhCCC-----------------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYGE---AEGGENDENLFRS----ICVLLQPP-----------------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfGe---atGgsnDL~~ar~----m~~~lG~~-----------------------  333 (389)
                        ..|+++++++++|+|||||||+++||.   ++|++||+++|+.    |+.++|+.                       
T Consensus       456 --~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~  533 (644)
T PRK10733        456 --SASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAK  533 (644)
T ss_pred             --cccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccccccccccccccc
Confidence              368999999999999999999999994   5799999999864    54445431                       


Q ss_pred             ---cc---HHHHHH----HHHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcHH--HHHHHHHH
Q 016454          334 ---LS---MAQMSN----QARWAVLQSYNLLKWHKHAHLEAVKALESGSSLS--VVIRRIEE  383 (389)
Q Consensus       334 ---~s---~~~id~----~vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL~--~Ci~~IE~  383 (389)
                         ++   ...+|+    .++.+|.+|++||++|++.+++||++|+++|||+  ++.+++..
T Consensus       534 ~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~  595 (644)
T PRK10733        534 AKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMAR  595 (644)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhc
Confidence               12   223454    4567999999999999999999999999999983  44455553

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.9e-26  Score=243.01  Aligned_cols=157  Identities=23%  Similarity=0.263  Sum_probs=134.2

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      -++|+|++|.+...+  .+++++|+.+||||+||++|+++++  +||+|+||+|     ||  .++|+++..|++|+   
T Consensus       385 ea~drv~~G~erks~--vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiP-----rG--~alG~t~~~Pe~d~---  452 (596)
T COG0465         385 EAIDRVIAGPERKSR--VISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIP-----RG--RALGYTLFLPEEDK---  452 (596)
T ss_pred             HHHHHHhcCcCcCCc--ccChhhhcchHHHHHHHHHHHHhCCCCcccceeeecc-----Cc--hhhcchhcCCcccc---
Confidence            479999999986544  5889999999999999999999998  5999999999     88  47899999997654   


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhC-C-CcchHhHHHHHH----HHHHHhCCC------------------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYG-E-AEGGENDENLFR----SICVLLQPP------------------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfG-e-atGgsnDL~~ar----~m~~~lG~~------------------------  333 (389)
                       +.+|++++.+.++++|||||||+++|| + ++|++||+++++    .|++++|.+                        
T Consensus       453 -~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~  531 (596)
T COG0465         453 -YLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKN  531 (596)
T ss_pred             -ccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccC
Confidence             567999999999999999999999999 7 469999999875    555555531                        


Q ss_pred             cc---HHHHHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhcCcHH
Q 016454          334 LS---MAQMSNQA----RWAVLQSYNLLKWHKHAHLEAVKALESGSSLS  375 (389)
Q Consensus       334 ~s---~~~id~~v----r~A~~rA~~LLrehr~aLe~LAeaLle~ETL~  375 (389)
                      +|   .+.||+++    ..+|.++++||.+|++.++.++++|+++||++
T Consensus       532 ~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~  580 (596)
T COG0465         532 YSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETID  580 (596)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
Confidence            33   24466655    45999999999999999999999999999973

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.92  E-value=2.4e-24  Score=222.32  Aligned_cols=157  Identities=22%  Similarity=0.235  Sum_probs=126.2

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      .+++++.+|....  -..+++++|+++||||||||||+++++  .|++++||.|     +|.  .+|+++..|..+    
T Consensus       290 ~a~~~~~~~~~~~--~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~p-----rg~--~~G~~~~~~~~~----  356 (495)
T TIGR01241       290 EAIDRVIAGPEKK--SRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIP-----RGQ--ALGYTQFLPEED----  356 (495)
T ss_pred             HHHHHHhcccccc--cccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEee-----cCC--ccceEEecCccc----
Confidence            4688998887532  224679999999999999999999995  7999999999     674  556676666433    


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhCCC-cchHhHHHHHHHH----HHHhCCC-------------------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYGEA-EGGENDENLFRSI----CVLLQPP-------------------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfGea-tGgsnDL~~ar~m----~~~lG~~-------------------------  333 (389)
                      .+..|+++++++++|+|||||||+++||+. +|+++|+++|+++    +..+|+.                         
T Consensus       357 ~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~  436 (495)
T TIGR01241       357 KYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAK  436 (495)
T ss_pred             cccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCcccccccccccccc
Confidence            246799999999999999999999999986 5999999999755    3334420                         


Q ss_pred             -cc---H----HHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcHH
Q 016454          334 -LS---M----AQMSNQARWAVLQSYNLLKWHKHAHLEAVKALESGSSLS  375 (389)
Q Consensus       334 -~s---~----~~id~~vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL~  375 (389)
                       ++   .    .++++.++++|.+|++||++|++++++||++|+++|+|+
T Consensus       437 ~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~  486 (495)
T TIGR01241       437 EYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETIT  486 (495)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeC
Confidence             11   1    223455679999999999999999999999999999984

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.2e-22  Score=218.23  Aligned_cols=163  Identities=20%  Similarity=0.259  Sum_probs=134.2

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      -++||++.|.+..  ...+++++++.+|||||||++++++++  +|+.++||+|      |.  +.|++++.|.++    
T Consensus       548 ~a~~Rvi~G~~~~--~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP------Gq--alG~a~~~P~~~----  613 (774)
T KOG0731|consen  548 YAIERVIAGMEKK--SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP------GQ--ALGYAQYLPTDD----  613 (774)
T ss_pred             HHHHHHhcccccc--chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc------CC--ccceEEECCccc----
Confidence            3799999997642  235789999999999999999998887  7999999999      53  678888888644    


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhC-C-CcchHhHHHHHHHH----HHHhCC---------------------Cc--
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYG-E-AEGGENDENLFRSI----CVLLQP---------------------PL--  334 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfG-e-atGgsnDL~~ar~m----~~~lG~---------------------~~--  334 (389)
                       +.+|+.+|.+++|++|||||||+++|| + ++|++||++++|.|    +..+|+                     ++  
T Consensus       614 -~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~  692 (774)
T KOG0731|consen  614 -YLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSE  692 (774)
T ss_pred             -ccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccch
Confidence             568999999999999999999999998 4 57999999998755    344442                     12  


Q ss_pred             -cHHHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHH
Q 016454          335 -SMAQMSNQAR----WAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEE  383 (389)
Q Consensus       335 -s~~~id~~vr----~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~  383 (389)
                       +.+.||.+++    .||++|.++|++|++.++.+|+.|+++|++  ++++.++..
T Consensus       693 ~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~  748 (774)
T KOG0731|consen  693 KTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGE  748 (774)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhcc
Confidence             2345776655    499999999999999999999999999997  777777654

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.79  E-value=7.3e-09  Score=120.76  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=78.1

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecch-hhhhcCccccccceecchhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPI-VAMQMGIQGQAGTQFWDEKMNNEL  282 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~-~a~rrG~~gagGt~f~~p~~e~~l  282 (389)
                      .|+||+++|...  +.  .+..++ +|||||+|||+|+.++.  +||+++||.|- ...++|  .+.|++++.|..    
T Consensus      1872 ~Al~Rq~~g~~~--~~--~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~--~~yl~~wyle~~---- 1940 (2281)
T CHL00206       1872 SALHRQTWDLRS--QV--RSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEG--DSYLYKWYFELG---- 1940 (2281)
T ss_pred             HHHHHHHhhhhh--cc--cCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCc--ccceeEeecCCc----
Confidence            479999999752  22  233444 58999999999999986  79999999641 112222  345777777742    


Q ss_pred             hccCCCHHHHHHHHHHHchHHHHHHHHhCCC--------c-ch-HhHHHHHHHH
Q 016454          283 AEGRLSGTAFDRYSMVLFAGIAAEALIYGEA--------E-GG-ENDENLFRSI  326 (389)
Q Consensus       283 ~~g~lT~~~L~~~i~VlLAGrAAEeLvfGea--------t-Gg-snDL~~ar~m  326 (389)
                        ..+++.++..+++++|||+|||++.|+..        . |- .+|+..+-.+
T Consensus      1941 --~~mkk~tiL~~Il~cLAGraAedlwf~~~~~~~n~It~yg~vEnD~~La~gl 1992 (2281)
T CHL00206       1941 --TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGL 1992 (2281)
T ss_pred             --ccCCHHHHHHHHHHHhhhhhhhhhccCcchhhhcCcccccchhhhhHHhHhH
Confidence              46799999999999999999999999632        1 32 5787766544

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.99  E-value=0.0011  Score=61.62  Aligned_cols=24  Identities=42%  Similarity=0.697  Sum_probs=21.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEE
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVI  254 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvT  254 (389)
                      -|..||.||+++|...|.+|.+++
T Consensus        11 ~v~iHElGH~~~Ar~~Gv~v~~f~   34 (182)
T cd06163          11 LIFVHELGHFLVAKLFGVKVEEFS   34 (182)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEee
Confidence            378999999999999999998844

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.54  E-value=0.0024  Score=61.07  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=44.5

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHchHHHHHHHHh
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY  310 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGrAAEeLvf  310 (389)
                      -+..||.||+++|+.+|.+++++++.|+          ||++..+++.        .+   ..+.+.|++||-++.-++.
T Consensus        55 ~v~iHElgH~~~A~~~G~~v~~i~l~p~----------Gg~~~~~~~~--------~~---~~~~~~IalAGPl~Nllla  113 (227)
T cd06164          55 SVLLHELGHSLVARRYGIPVRSITLFLF----------GGVARLEREP--------ET---PGQEFVIAIAGPLVSLVLA  113 (227)
T ss_pred             HHHHHHHHHHHHHHHcCCeECeEEEEee----------eEEEEecCCC--------CC---HHHHhhhhhhHHHHHHHHH
Confidence            5789999999999999999999999993          3444443311        12   2345679999999987764


Q ss_pred             C
Q 016454          311 G  311 (389)
Q Consensus       311 G  311 (389)
                      .
T Consensus       114 ~  114 (227)
T cd06164         114 L  114 (227)
T ss_pred             H
Confidence            3

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.40  E-value=0.0027  Score=59.68  Aligned_cols=60  Identities=30%  Similarity=0.475  Sum_probs=43.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHchHHHHHHHHh
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY  310 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGrAAEeLvf  310 (389)
                      -+..||.||+++|+.+|.+++++++.|+     |     |....++.       .  .  .-.+.+.|++||-.+.-++.
T Consensus        40 ~v~iHElgH~~~A~~~G~~v~~i~l~p~-----G-----g~~~~~~~-------~--~--~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          40 SVLLHELGHALVARRYGIRVRSITLLPF-----G-----GVAELEEE-------P--E--TPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEee-----e-----eeeeeccC-------C--C--ChhHheeeeeehHHHHHHHH
Confidence            5789999999999999999999999993     2     32222211       0  1  22345678999999997765


Q ss_pred             C
Q 016454          311 G  311 (389)
Q Consensus       311 G  311 (389)
                      .
T Consensus        99 ~   99 (208)
T cd06161          99 G   99 (208)
T ss_pred             H
Confidence            4

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.19  E-value=0.0046  Score=64.25  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=23.4

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEec
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILD  256 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIi  256 (389)
                      .|.+||.||||+|.++|..|.+++|-
T Consensus        17 li~vHElGHfl~Ar~~gv~V~~FsiG   42 (449)
T PRK10779         17 LITVHEFGHFWVARRCGVRVERFSIG   42 (449)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEEEee
Confidence            58899999999999999999987764

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.17  E-value=0.0032  Score=56.93  Aligned_cols=75  Identities=21%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhc-----Cc--cccccceecchhhhhhhhccCCCHHHHHHHHHHHchHH
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQM-----GI--QGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGI  303 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rr-----G~--~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGr  303 (389)
                      -+..||.||+++|+..|+++.+.++...-...+     |.  ---+|+....+..++.      .+..-.+.+.|.+||.
T Consensus        10 ~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~------~~~~~~~~~~i~laGP   83 (180)
T cd05709          10 SVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRA------FKKPRWQRLLVALAGP   83 (180)
T ss_pred             HHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhh------hccchhhhhhhhhhhH
Confidence            368999999999999999776554321000000     00  0023444333321110      0123445667899999


Q ss_pred             HHHHHHhC
Q 016454          304 AAEALIYG  311 (389)
Q Consensus       304 AAEeLvfG  311 (389)
                      .+.-+...
T Consensus        84 l~nllla~   91 (180)
T cd05709          84 LANLLLAL   91 (180)
T ss_pred             HHHHHHHH
Confidence            99987654

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=96.08  E-value=0.0059  Score=57.19  Aligned_cols=27  Identities=44%  Similarity=0.753  Sum_probs=25.8

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecc
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDP  257 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP  257 (389)
                      -+..||.||++++.++|..++++++.|
T Consensus        24 ~t~~HE~gHal~a~l~G~~v~~i~l~~   50 (200)
T PF13398_consen   24 VTFVHELGHALAALLTGGRVKGIVLFP   50 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEEEe
Confidence            389999999999999999999999999

>TIGR00054 RIP metalloprotease RseP

Probab=95.93  E-value=0.0067  Score=62.66  Aligned_cols=22  Identities=45%  Similarity=0.674  Sum_probs=20.1

Q ss_pred             HHHHHHHhHHHHHHHhCCCcce
Q 016454          231 RILVHEAGHLLIAYLMGCPIRG  252 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~k  252 (389)
                      .|.+||.||+++|.++|..|.+
T Consensus        16 ~v~~HE~gH~~~a~~~g~~v~~   37 (420)
T TIGR00054        16 LIFVHELGHFLAARLCGIKVER   37 (420)
T ss_pred             HHHHHhHHHHHHHHHcCCEEEE
Confidence            5789999999999999998885

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.74  E-value=0.0092  Score=54.23  Aligned_cols=24  Identities=38%  Similarity=0.445  Sum_probs=18.0

Q ss_pred             HHHHHHhHHHHHHHhCCCcceEEe
Q 016454          232 ILVHEAGHLLIAYLMGCPIRGVIL  255 (389)
Q Consensus       232 IAyHEAGHALVAyLLg~PV~kvTI  255 (389)
                      +..||.||+++|+..|+++.++++
T Consensus        10 i~~HE~gH~~~a~~~G~~~~~~~~   33 (192)
T PF02163_consen   10 IVLHELGHALAARLYGDKVPRFEG   33 (192)
T ss_dssp             HHHHHHHHHHHHHTTT--B--EEE
T ss_pred             cccccccccccccccccccccccc
Confidence            678999999999999999888853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=94.94  E-value=0.025  Score=56.15  Aligned_cols=67  Identities=15%  Similarity=0.024  Sum_probs=43.8

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHchHHHHHHHHh
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY  310 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGrAAEeLvf  310 (389)
                      -+..||-||+++|...|.+|+++.+.++--+      -+|+.-.+++  +. .  ..+.   .+++.|++||.++.-++-
T Consensus       137 svvvHElgHal~A~~~gi~V~~iGl~l~~~~------pGa~ve~~~e--~~-~--~~~~---~~~l~Ia~AGp~~NlvLa  202 (277)
T cd06162         137 SGVVHEMGHGVAAVREQVRVNGFGIFFFIIY------PGAYVDLFTD--HL-N--LISP---VQQLRIFCAGVWHNFVLG  202 (277)
T ss_pred             HHHHHHHHHHHHHHHcCCeeceEEEeeeecc------CeeEEeeccc--cc-c--cCCh---hhhhheehhhHHHHHHHH
Confidence            4689999999999999999999988763111      1333333222  11 1  1222   246689999999988765


Q ss_pred             C
Q 016454          311 G  311 (389)
Q Consensus       311 G  311 (389)
                      .
T Consensus       203 ~  203 (277)
T cd06162         203 L  203 (277)
T ss_pred             H
Confidence            4

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=94.22  E-value=0.038  Score=51.47  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=25.2

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecc
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDP  257 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP  257 (389)
                      -+..||.||+++|+..|+++.+..+.|
T Consensus        43 ~l~iHElgH~~~A~~~G~~~~~~~l~P   69 (183)
T cd06160          43 ILGIHEMGHYLAARRHGVKASLPYFIP   69 (183)
T ss_pred             HHHHHHHHHHHHHHHCCCCccceeeee
Confidence            578999999999999999999999888

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=92.31  E-value=0.056  Score=53.16  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHchHHHHHHHHh
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY  310 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGrAAEeLvf  310 (389)
                      -+..||.||+++|...|++|+.+.+.-     ... --||  +..|+++..      .+..-.+++.|++||..+.-+..
T Consensus       120 sv~iHElgHa~~Ar~~G~~V~~iGl~l-----~~i-p~Gg--~v~~~~~~~------~~~~~~~~~~Ia~AGP~~Nlvla  185 (263)
T cd06159         120 GVVVHELSHGILARVEGIKVKSGGLLL-----LII-PPGA--FVEPDEEEL------NKADRRIRLRIFAAGVTANFVVA  185 (263)
T ss_pred             HHHHHHHHHHHHHHHcCCEECchhHHH-----Hhh-hcEE--EEEecchhh------ccCChhheeeeeeehHHHHHHHH
Confidence            478999999999999999988865421     000 0123  333322211      11223356678999998886654

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=89.39  E-value=0.26  Score=45.61  Aligned_cols=75  Identities=21%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             HHHHHHhHHHHHHHhCCCcc----eEEecchhhhhc-Ccc----c-cccceecchhhhhhhhccCCCHHHHHHHHHHHch
Q 016454          232 ILVHEAGHLLIAYLMGCPIR----GVILDPIVAMQM-GIQ----G-QAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFA  301 (389)
Q Consensus       232 IAyHEAGHALVAyLLg~PV~----kvTIiP~~a~rr-G~~----g-agGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLA  301 (389)
                      +..||.||+++|+..|++..    ..|+.|+.-..- |.-    . ..|..+..|..-+.   ... ++.-.+...|++|
T Consensus        12 i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~---~~~-~~~r~~~~~valA   87 (181)
T cd06158          12 ITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNP---RNF-KNPRRGMLLVSLA   87 (181)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccCh---Hhh-cccHhhHhhhhhh
Confidence            67899999999999998665    367767311110 100    0 00233333321111   011 2222345679999


Q ss_pred             HHHHHHHHh
Q 016454          302 GIAAEALIY  310 (389)
Q Consensus       302 GrAAEeLvf  310 (389)
                      |-++.-+..
T Consensus        88 GP~~n~~la   96 (181)
T cd06158          88 GPLSNLLLA   96 (181)
T ss_pred             hHHHHHHHH
Confidence            999987653

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=83.16  E-value=0.84  Score=44.05  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=15.1

Q ss_pred             HHHHHHHhHHHHHHHhCCCc
Q 016454          231 RILVHEAGHLLIAYLMGCPI  250 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV  250 (389)
                      -|-|||.||||+..+ +.||
T Consensus        94 ~~l~HE~GHAlI~~~-~lPv  112 (220)
T PF14247_consen   94 FTLYHELGHALIDDL-DLPV  112 (220)
T ss_pred             HHHHHHHHHHHHHHh-cCCc
Confidence            588999999999854 4554

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=80.52  E-value=0.81  Score=39.62  Aligned_cols=16  Identities=31%  Similarity=0.482  Sum_probs=13.5

Q ss_pred             hhhhHHHHHHHHhHHH
Q 016454          226 PPYKRRILVHEAGHLL  241 (389)
Q Consensus       226 ~~ekrRIAyHEAGHAL  241 (389)
                      ..+...|+.||.||+|
T Consensus       102 ~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  102 GNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhcccccc
Confidence            4567799999999985

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 58/406 (14%), Positives = 106/406 (26%), Gaps = 102/406 (25%)

Query: 14  LSHQKCCFLFPQTLVQGKLKPLRTKYLARALKEW---QEYEDAVKRKDLARALRFLKNKN 70
             ++    +F    V         K +    K     +E +  +  KD       L    
Sbjct: 16  YQYKDILSVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---- 67

Query: 71  DNNPIEPLSDSLMGESNRARLPEFVGGFDR-DWEVLDTCLNADDLKLVASAYKFLQNRGF 129
                  L      E    +   FV    R +++ L + +  +  +       +++ R  
Sbjct: 68  ----FWTLLSK--QEEMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 130 L----PSFGKFNRIVLEGPRDVTPTVLKSSTGLEASKLSPKKW----GVSGSSRVALVA- 180
           L      F K+N       R      L+    L   +L P K     GV GS +  +   
Sbjct: 119 LYNDNQVFAKYNV-----SRLQPYLKLR--QALL--ELRPAKNVLIDGVLGSGKTWVALD 169

Query: 181 ---------FLGGTSFLLSQGIDIRPNLAVILGLALVDAIFLGGVCLAQISSYWP----- 226
                     +    F L+      P   + +   L+  I       +  SS        
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 227 --PYKRRILVHEAGH--LLI-----------AYLMGCPIRGVIL--DPIVAMQMGIQGQA 269
                RR+L  +     LL+           A+ + C I  ++      V   +      
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLS--AAT 285

Query: 270 GTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLFRSICVL 329
            T    +  +  L                L                    ++L R +   
Sbjct: 286 TTHISLDHHSMTLTP---------DEVKSLLLKYL-----------DCRPQDLPREVLTT 325

Query: 330 LQPPL--SM--AQMSNQ-ARWAVLQSYNLLKWHKHAHLEAVKALES 370
              P   S+    + +  A W   +  N  K        ++  LE 
Sbjct: 326 N--PRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 84/283 (29%)

Query: 3   LSASPFPKSLL-LSH-----------QKCCFLFPQTLVQGKLKPLRTKYLARALKEWQEY 50
           L + P+   LL L +             C     + L+       R K +   L      
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTT-----RFKQVTDFLSAATTT 287

Query: 51  EDAVKR------KDLARAL--RFLKNKNDNNPIE-----PLSDSLMGESNRARLPEFVGG 97
             ++         D  ++L  ++L  +  + P E     P   S++ ES    + + +  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRDGLAT 343

Query: 98  FDRDWEVLDTCLNADDL-KLVASAYKFLQ---NRGFLPSFGKFNRIVLEGPRDV--TPTV 151
           +D  W+     +N D L  ++ S+   L+    R        F       P        +
Sbjct: 344 WDN-WKH----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-------PPSAHIPTIL 391

Query: 152 L--------KSSTGLEASKLSPK----KWGVSGSSRVALVAFLGGTSFLLSQGIDIRPNL 199
           L        KS   +  +KL       K     +        +      L   ++    L
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYLELKVKLENEYAL 445

Query: 200 --AVILGLALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHL 240
             +++    +        +    +  Y+  +    + H   HL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGH---HL 481

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.94
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.92
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	96.27

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=2.1e-34  Score=273.16  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=115.9

Q ss_pred             hCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHH
Q 016454          213 LGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGT  290 (389)
Q Consensus       213 ~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~  290 (389)
                      ||.+...  ..+++++|++||||||||||||++++  +||+||||+|     ||  +++|++++.|+.|+    +.+|++
T Consensus         2 ~G~ekk~--~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiP-----RG--~alG~t~~~P~ed~----~~~tk~   68 (238)
T 2di4_A            2 QGPLGSH--MTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIP-----RG--MALGVTQQLPIEDK----HIYDKK   68 (238)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------C----CCCBHH
T ss_pred             CCccccC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEee-----cC--CcceEEEeCCcccc----cccCHH
Confidence            5655432  25789999999999999999999998  8999999999     77  36788888887554    457999


Q ss_pred             HHHHHHHHHchHHHHHHHHh--CC-CcchHhHHHHHH----HHHHHhCCC------------------------cc---H
Q 016454          291 AFDRYSMVLFAGIAAEALIY--GE-AEGGENDENLFR----SICVLLQPP------------------------LS---M  336 (389)
Q Consensus       291 ~L~~~i~VlLAGrAAEeLvf--Ge-atGgsnDL~~ar----~m~~~lG~~------------------------~s---~  336 (389)
                      +|.+.++|+|||||||+|+|  |+ ++|++||+++++    .|+..+|++                        +|   .
T Consensus        69 ~l~~~i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta  148 (238)
T 2di4_A           69 DLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLL  148 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHH
Confidence            99999999999999999999  55 679999999987    455555531                        12   2


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHHh
Q 016454          337 AQMSNQ----ARWAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEEA  384 (389)
Q Consensus       337 ~~id~~----vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~a  384 (389)
                      ..||.+    +++||.+|++||++|++.+++||++|+++|||  +++.++|+..
T Consensus       149 ~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~  202 (238)
T 2di4_A          149 REIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  202 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence            345544    56899999999999999999999999999999  8888888753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.94  E-value=3e-26  Score=235.18  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=118.2

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELA  283 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~  283 (389)
                      -++|++++|....  ...+++++++++||||+||++|+++++  +|++++||+|     +|. +++|++++.|++|+   
T Consensus       251 ~al~~v~~~~~~~--~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~p-----rg~-~alg~~~~~p~~~~---  319 (476)
T 2ce7_A          251 EAIDRVIAGPARK--SLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIP-----RGY-KALGYTLHLPEEDK---  319 (476)
T ss_dssp             HHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------------C---
T ss_pred             HHHHHHhcCcccc--chhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeec-----Ccc-cccceEEEcCcccc---
Confidence            4689998886532  235789999999999999999999997  7999999999     773 36788888886554   


Q ss_pred             ccCCCHHHHHHHHHHHchHHHHHHHHhCCC-cchHhHHHHHHHH----HHHhCCC-------------------------
Q 016454          284 EGRLSGTAFDRYSMVLFAGIAAEALIYGEA-EGGENDENLFRSI----CVLLQPP-------------------------  333 (389)
Q Consensus       284 ~g~lT~~~L~~~i~VlLAGrAAEeLvfGea-tGgsnDL~~ar~m----~~~lG~~-------------------------  333 (389)
                       +.+|+++|.++++|+|||||||+++||+. +|++||+++++.+    +..+|+.                         
T Consensus       320 -~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~  398 (476)
T 2ce7_A          320 -YLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLR  398 (476)
T ss_dssp             -CSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CC
T ss_pred             -cccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccc
Confidence             45799999999999999999999999985 6889999998754    5544431                         


Q ss_pred             -cc---HHHHHHH----HHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHH
Q 016454          334 -LS---MAQMSNQ----ARWAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEE  383 (389)
Q Consensus       334 -~s---~~~id~~----vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~  383 (389)
                       +|   ...+|++    ++.+|.+|++||++|++.+++||++|+++|||  +++.++++.
T Consensus       399 ~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~  458 (476)
T 2ce7_A          399 NYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE  458 (476)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence             12   2345554    45799999999999999999999999999999  666666654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.92  E-value=1.2e-24  Score=224.55  Aligned_cols=163  Identities=20%  Similarity=0.172  Sum_probs=132.1

Q ss_pred             HHHHHHHhCcccccccCCCChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchh-hhhhh
Q 016454          206 ALVDAIFLGGVCLAQISSYWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEK-MNNEL  282 (389)
Q Consensus       206 ~aiD~V~~Gg~~~~~l~~ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~-~e~~l  282 (389)
                      -++|++.+|....  ...+++++|++++|||+||++|+|+++  +||+++||+|     +|  ++.|+++  |+ .+.  
T Consensus       266 ~al~~v~~~~~~~--~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~p-----r~--~~~g~~~--p~q~~~--  332 (499)
T 2dhr_A          266 EAADRVMMLPAKK--SLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVP-----RG--RALGFMM--PRREDM--  332 (499)
T ss_dssp             HHHHHHTTCSSSS--CCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCC-----SS--CTTCSSH--HHHTTC--
T ss_pred             HHHHHHhcccccc--cchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeec-----CC--CcCcccc--cchhhh--
Confidence            4689999986532  225789999999999999999999987  7999999999     76  3667777  54 333  


Q ss_pred             hccCCCHHHHHHHHHHHchHHHHHHHHhCCC-cchHhHHHHHHH----HHHHhCCC-----------------------c
Q 016454          283 AEGRLSGTAFDRYSMVLFAGIAAEALIYGEA-EGGENDENLFRS----ICVLLQPP-----------------------L  334 (389)
Q Consensus       283 ~~g~lT~~~L~~~i~VlLAGrAAEeLvfGea-tGgsnDL~~ar~----m~~~lG~~-----------------------~  334 (389)
                        +.+|+.++...|+++|||||||+++||+. +|++||+++++.    |+..+|+.                       +
T Consensus       333 --~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~  410 (499)
T 2dhr_A          333 --LHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQY  410 (499)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCC
T ss_pred             --hccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCcccccccccccc
Confidence              45799999999999999999999999985 699999999975    45445431                       1


Q ss_pred             c---HHHHHHH----HHHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHH
Q 016454          335 S---MAQMSNQ----ARWAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEE  383 (389)
Q Consensus       335 s---~~~id~~----vr~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~  383 (389)
                      +   ...||++    ++++|.+|++||++|++.+++||++|+++|||  +++.++++.
T Consensus       411 s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~  468 (499)
T 2dhr_A          411 SEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEG  468 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence            2   2345544    56799999999999999999999999999999  667677764

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=96.27  E-value=0.0028  Score=59.14  Aligned_cols=57  Identities=28%  Similarity=0.444  Sum_probs=41.0

Q ss_pred             HHHHHHHhHHHHHHHhCCCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHchHHHHHHHHh
Q 016454          231 RILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFAGIAAEALIY  310 (389)
Q Consensus       231 RIAyHEAGHALVAyLLg~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLAGrAAEeLvf  310 (389)
                      -+..||.||+++|+..|++++++++.|+     |     |+.-...          .++   .+.+.|++||-.+.-+.-
T Consensus        50 ~v~~HElgH~~~A~~~G~~~~~i~l~p~-----G-----g~~~~~~----------~~~---~~~~~ValAGPl~nl~la  106 (224)
T 3b4r_A           50 SVVLHELGHSYVAKKYGVKIEKILLLPI-----G-----GVAMMDK----------IPK---EGELRIGIAGPLVSFIIG  106 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCEEECSS-----S-----CBCCCCC----------CCS---SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccEEEEEe-----e-----eEEEccc----------CCc---cceeeeeeeHHHHHHHHH
Confidence            4678999999999999999999999993     2     3222111          111   345578899999886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d2ce7a1	193	a.269.1.1 (A:411-603) Cell division protein FtsH,	3e-05
d2di4a1	202	a.269.1.1 (A:406-607) Cell division protein FtsH,	5e-05

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 193

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 229 KRRILVHEAGHLLIAYLM--GCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGR 286
           KR I  HEAGH +++ ++  G P+  +    I+       G       ++K         
Sbjct: 7   KRIIAYHEAGHAVVSTVVPNGEPVHRIS---IIPRGYKALGYTLHLPEEDKYL------- 56

Query: 287 LSGTAFDRYSMVLFAGIAAEALIYGEAEGGENDE 320
           +S          L  G AAE +++G+   G  ++
Sbjct: 57  VSRNELLDKLTALLGGRAAEEVVFGDVTSGAAND 90

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 229 KRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLS 288
           K +I +HEAGH L+  +          D +  + +  +G A        + ++    +  
Sbjct: 7   KEKIAIHEAGHALMGLVSDDD------DKVHKISIIPRGMALGVTQQLPIEDKHIYDK-- 58

Query: 289 GTAFDRYSMVLFAGIAAEALIYGEAEGGENDENLF 323
                   +VL  G AAE + +G+       EN  
Sbjct: 59  -KDLYNKILVLLGGRAAEEVFFGKDGITTGAENDL 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.97
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.97
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	84.58
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	83.25
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	80.8
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	80.36

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.4e-30  Score=233.71  Aligned_cols=141  Identities=20%  Similarity=0.260  Sum_probs=105.2

Q ss_pred             CChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHch
Q 016454          224 YWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFA  301 (389)
Q Consensus       224 ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLA  301 (389)
                      ++|++|+|||||||||||||++++  .|+.+|||+|     +|. +.+|++...|+.++    +..|++++.+.++|+||
T Consensus         2 ls~~er~~vA~HEAGHAlva~~l~~~~~i~~vsI~~-----r~~-~~~g~~~~~~~~~~----~~~t~~~l~~~i~v~La   71 (193)
T d2ce7a1           2 ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIP-----RGY-KALGYTLHLPEEDK----YLVSRNELLDKLTALLG   71 (193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------------C----CSCBHHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEec-----Ccc-CCCceeecCCcccc----ccCcHHHHHHHHHHHHH
Confidence            689999999999999999999996  6899999999     653 45677777775443    35699999999999999


Q ss_pred             HHHHHHHHhCCC-cchHhHHHHHHHHH----HHhCCC--------------------------cc---HHHHH----HHH
Q 016454          302 GIAAEALIYGEA-EGGENDENLFRSIC----VLLQPP--------------------------LS---MAQMS----NQA  343 (389)
Q Consensus       302 GrAAEeLvfGea-tGgsnDL~~ar~m~----~~lG~~--------------------------~s---~~~id----~~v  343 (389)
                      |||||+++||+. +|+++|+++++.+.    ..+|+.                          .+   ...+|    +.+
T Consensus        72 GraAE~~~~g~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll  151 (193)
T d2ce7a1          72 GRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIV  151 (193)
T ss_dssp             HHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCccCcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccccccHHHHHHHHHHHHHHH
Confidence            999999999985 68899999997653    333320                          11   12244    456


Q ss_pred             HHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH
Q 016454          344 RWAVLQSYNLLKWHKHAHLEAVKALESGSSL  374 (389)
Q Consensus       344 r~A~~rA~~LLrehr~aLe~LAeaLle~ETL  374 (389)
                      +.||.+|++||++|++.+++||++|+++|||
T Consensus       152 ~~a~~~a~~iL~~~~~~l~~la~~Lle~e~L  182 (193)
T d2ce7a1         152 TNCYERAKEIIRKYRKQLDNIVEILLEKETI  182 (193)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCee
Confidence            6799999999999999999999999999998

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=2.9e-30  Score=232.90  Aligned_cols=150  Identities=19%  Similarity=0.240  Sum_probs=113.5

Q ss_pred             CChhhhHHHHHHHHhHHHHHHHhC--CCcceEEecchhhhhcCccccccceecchhhhhhhhccCCCHHHHHHHHHHHch
Q 016454          224 YWPPYKRRILVHEAGHLLIAYLMG--CPIRGVILDPIVAMQMGIQGQAGTQFWDEKMNNELAEGRLSGTAFDRYSMVLFA  301 (389)
Q Consensus       224 ls~~ekrRIAyHEAGHALVAyLLg--~PV~kvTIiP~~a~rrG~~gagGt~f~~p~~e~~l~~g~lT~~~L~~~i~VlLA  301 (389)
                      +||++|+||||||||||+||++++  +||.+|||+|     +|. +.+++.+.+++ +    ....|++++.+.++|+||
T Consensus         2 ls~~ek~~vA~HEAGHAvva~~l~~~~~v~~vtI~p-----rg~-~~g~~~~~~~~-~----~~~~t~~~l~~~i~v~Lg   70 (202)
T d2di4a1           2 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIP-----RGM-ALGVTQQLPIE-D----KHIYDKKDLYNKILVLLG   70 (202)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC---------------------------CCCCBHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEec-----CCc-cccccccCccc-c----cchhhHHHHHHHHHHHHh
Confidence            689999999999999999999998  6899999999     773 45555555443 2    245799999999999999


Q ss_pred             HHHHHHHHhCC---CcchHhHHHHHHHH----HHHhCCC------------------------cc---HHHHH----HHH
Q 016454          302 GIAAEALIYGE---AEGGENDENLFRSI----CVLLQPP------------------------LS---MAQMS----NQA  343 (389)
Q Consensus       302 GrAAEeLvfGe---atGgsnDL~~ar~m----~~~lG~~------------------------~s---~~~id----~~v  343 (389)
                      |||||+++||+   ++|+++|+++++.+    +..+|+.                        +|   ..++|    +.+
T Consensus        71 GraAE~i~~g~~~~~~g~~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll  150 (202)
T d2di4a1          71 GRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRII  150 (202)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHH
T ss_pred             hhhcceeeecCcccccCccchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccccchhhHHHHHHHHHHHHH
Confidence            99999999996   57889999999754    4444420                        12   23344    446


Q ss_pred             HHHHHHHHHHHHHcHHHHHHHHHHHHhcCcH--HHHHHHHHHh
Q 016454          344 RWAVLQSYNLLKWHKHAHLEAVKALESGSSL--SVVIRRIEEA  384 (389)
Q Consensus       344 r~A~~rA~~LLrehr~aLe~LAeaLle~ETL--~~Ci~~IE~a  384 (389)
                      +++|.+|++||++|++.+++||++|+++|||  +++.++|++.
T Consensus       151 ~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~~  193 (202)
T d2di4a1         151 TEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  193 (202)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHHHC
Confidence            7799999999999999999999999999998  6677888875

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=0.18  Score=40.23  Aligned_cols=16  Identities=38%  Similarity=0.482  Sum_probs=13.5

Q ss_pred             hhhhHHHHHHHHhHHH
Q 016454          226 PPYKRRILVHEAGHLL  241 (389)
Q Consensus       226 ~~ekrRIAyHEAGHAL  241 (389)
                      ..+...|+.||.||||
T Consensus       103 ~~~~~~v~~HEiGHaL  118 (157)
T d1hfca_         103 EYNLHRVAAHELGHSL  118 (157)
T ss_dssp             SCBHHHHHHHHHHHHH
T ss_pred             cchhhhhHhhhhhhhc
Confidence            4566789999999986

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.2  Score=39.94  Aligned_cols=18  Identities=33%  Similarity=0.124  Sum_probs=14.6

Q ss_pred             ChhhhHHHHHHHHhHHHH
Q 016454          225 WPPYKRRILVHEAGHLLI  242 (389)
Q Consensus       225 s~~ekrRIAyHEAGHALV  242 (389)
                      +..+...|+.||.||||=
T Consensus       113 ~~~~~~~v~~HEiGHaLG  130 (169)
T d1rm8a_         113 DGNDLFLVAVHELGHALG  130 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             Ccchhhhhhhhhhhhhhc
Confidence            346678999999999973

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=0.28  Score=39.89  Aligned_cols=17  Identities=29%  Similarity=0.071  Sum_probs=13.7

Q ss_pred             hhhhHHHHHHHHhHHHH
Q 016454          226 PPYKRRILVHEAGHLLI  242 (389)
Q Consensus       226 ~~ekrRIAyHEAGHALV  242 (389)
                      ..+...|+.||.||||=
T Consensus       111 ~~~~~~v~~HEiGHaLG  127 (166)
T d1mmqa_         111 GINFLYAATHELGHSLG  127 (166)
T ss_dssp             SEEHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhhccccC
Confidence            45667899999999973

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.36  E-value=0.32  Score=39.36  Aligned_cols=17  Identities=29%  Similarity=0.127  Sum_probs=13.8

Q ss_pred             hhhhHHHHHHHHhHHHH
Q 016454          226 PPYKRRILVHEAGHLLI  242 (389)
Q Consensus       226 ~~ekrRIAyHEAGHALV  242 (389)
                      ..+...|+.||.||||=
T Consensus       109 ~~~~~~v~~HEiGHaLG  125 (163)
T d1i76a_         109 NYNLFLVAAHEFGHSLG  125 (163)
T ss_dssp             SCBHHHHHHHHHHHHHT
T ss_pred             cchheeehhhhhhhhhc
Confidence            44567899999999974