Citrus Sinensis ID: 016456

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESALRAHSSSIRGSRRQAKIAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTRTSGGETNNQSSTPSVTPDCN
cccccccccccccccccccccccccccccHHcccccccccEEEEEEEEccccccccccEEEEEccEEEEEEcccccEEEEEEEcccEEEEEEcccccccccEEEEEEcccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEccccccccHHHHHHHHcccccEEEccccccccccccEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccccccHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEcHHEEEEEHHHcccEEEEEEEHHcHEEEEEcccccEcccEEEEEEcccccccccccccccccEEEEEEcHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHcccccHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
mngyaganarrrasldkqgptvvhqkpgplqtIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMkviipigdideiRRSQHAFINPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESALRAHSSSIRGSRRQAKIAeetvtkpeklqpfikEEVLVGIyndvfpctaEQFFTLLfsddstftNEYRAArkdtnlvmgqwhaadeydgqVREITFRslcnspmcppdtamteyqhavlspdkkIFVFETVqqahdvpfgsyfEIHCRWHLEtisensstidIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTrtsggetnnqsstpsvtpdcn
mngyaganarrrasldkqgptvvhqkpgPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKaesalrahsssirgsrrqakiaeetvtkpeklqpfIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSkiktgavneyKKEVELMLETARSYIktrtsggetnnqsstpsvtpdcn
MngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHkmleaekkekaesalraHSSSIRGSRRQAKIAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTRTSGGETNNQSSTPSVTPDCN
****************************PLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYH******************************************QPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSY************************
****************************PLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESALRAH************IAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHA*****GQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLET****************************
**********************VHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAE*************************AEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKT*********************
*NG*AGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHG*PPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYH*****************************************LQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTR********************
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MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIRGSRRQAKIAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTRTSGGETNNQSSTPSVTPDCN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
O42976 764 Uncharacterized membrane yes no 0.313 0.159 0.309 3e-13
Q9ZVT91020 C2 and GRAM domain-contai no no 0.696 0.265 0.214 1e-10
Q5R8N8446 GRAM domain-containing pr yes no 0.236 0.206 0.299 1e-09
Q96HH9432 GRAM domain-containing pr yes no 0.236 0.212 0.299 2e-09
Q5FVG8445 GRAM domain-containing pr no no 0.236 0.206 0.308 2e-09
Q3V3G7320 GRAM domain-containing pr yes no 0.257 0.312 0.295 2e-09
Q9FGS81027 C2 and GRAM domain-contai no no 0.676 0.256 0.214 5e-09
Q6PEM6445 GRAM domain-containing pr no no 0.236 0.206 0.289 5e-09
Q8IUY3354 GRAM domain-containing pr no no 0.257 0.282 0.295 1e-08
P43560 674 Uncharacterized protein Y yes no 0.221 0.127 0.318 3e-07
>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 33/155 (21%)

Query: 1   MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DELVEHSYSCALERSFLYHG 58
           ++GYA AN++R     +               IF +LP  D L++  Y CAL+R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 59  RMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPL 118
           RMY+S  HICF+S++F     ++IP+ +I  + +   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 119 GSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKML 153
                  RY FASF +R+   + +  I KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 Back     alignment and function description
>sp|Q5R8N8|GRAM3_PONAB GRAM domain-containing protein 3 OS=Pongo abelii GN=GRAMD3 PE=2 SV=1 Back     alignment and function description
>sp|Q96HH9|GRAM3_HUMAN GRAM domain-containing protein 3 OS=Homo sapiens GN=GRAMD3 PE=1 SV=1 Back     alignment and function description
>sp|Q5FVG8|GRAM3_RAT GRAM domain-containing protein 3 OS=Rattus norvegicus GN=Gramd3 PE=2 SV=1 Back     alignment and function description
>sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus musculus GN=Gramd2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1 Back     alignment and function description
>sp|Q6PEM6|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1 SV=2 Back     alignment and function description
>sp|Q8IUY3|GRAM2_HUMAN GRAM domain-containing protein 2 OS=Homo sapiens GN=GRAMD2 PE=2 SV=2 Back     alignment and function description
>sp|P43560|YFE2_YEAST Uncharacterized protein YFL042C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL042C PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
224121784 590 predicted protein [Populus trichocarpa] 0.994 0.655 0.819 0.0
359478193 588 PREDICTED: C2 and GRAM domain-containing 0.982 0.649 0.804 0.0
356519666 585 PREDICTED: C2 and GRAM domain-containing 0.989 0.658 0.797 0.0
356500100 584 PREDICTED: C2 and GRAM domain-containing 0.982 0.654 0.796 0.0
357475565 582 GRAM domain-containing protein [Medicago 0.989 0.661 0.779 0.0
22331873 594 C2 domain and GRAM domain-containing pro 0.940 0.616 0.769 1e-175
449468844 598 PREDICTED: C2 and GRAM domain-containing 0.984 0.640 0.731 1e-171
449484724 598 PREDICTED: LOW QUALITY PROTEIN: C2 and G 0.984 0.640 0.731 1e-171
297820804 586 C2 domain-containing protein [Arabidopsi 0.897 0.595 0.772 1e-167
6996302 604 putative protein [Arabidopsis thaliana] 0.940 0.605 0.719 1e-162
>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/388 (81%), Positives = 343/388 (88%), Gaps = 1/388 (0%)

Query: 1   MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRM 60
           +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE+VEHSYSCALERSFLYHGRM
Sbjct: 201 VNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHSYSCALERSFLYHGRM 260

Query: 61  YVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGS 120
           YVSAW+ICFHSNVFSKQMKV+IP GDIDEIRRSQHAFINPA+TIILRMGAGGHGVPPLGS
Sbjct: 261 YVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTIILRMGAGGHGVPPLGS 320

Query: 121 PDGRVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESALRAHSSSIRGSRRQAK 180
           PDGRVRYKFASFWNRNHALR LQR AKNY  MLEAEKKE+AESALRAHSSSIR   RQA 
Sbjct: 321 PDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESALRAHSSSIRSGTRQAN 380

Query: 181 IAEETVTKPEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNL 240
           I E+ V K  KLQ FIKEEVLVGIYND+FPCTAEQFF +   D STF NEYR+ RKD+NL
Sbjct: 381 IPEDVVQKAGKLQAFIKEEVLVGIYNDLFPCTAEQFFNICLKDGSTFINEYRSVRKDSNL 440

Query: 241 VMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHD 300
           VMGQWHAADEYDGQVREITFRSLCNSPMCPPDTA+TE+QH VLSPDKK  VFETVQQ HD
Sbjct: 441 VMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSPDKKKLVFETVQQPHD 500

Query: 301 VPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLE 360
           VPFGSYFEIHCRW LET  ENS  +DIK GAHFKKWCVMQSKI++GA+NEYKKEV+LMLE
Sbjct: 501 VPFGSYFEIHCRWSLETNGENSCAMDIKAGAHFKKWCVMQSKIRSGAINEYKKEVDLMLE 560

Query: 361 TARSYIKTRTSGGETNNQ-SSTPSVTPD 387
            AR+  K+  S GET ++ SS+P +T D
Sbjct: 561 MARASAKSHMSSGETTDKSSSSPIITQD 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max] Back     alignment and taxonomy information
>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max] Back     alignment and taxonomy information
>gi|357475565|ref|XP_003608068.1| GRAM domain-containing protein [Medicago truncatula] gi|355509123|gb|AES90265.1| GRAM domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|6996302|emb|CAB75463.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2097578594 AT3G59660 "AT3G59660" [Arabido 0.961 0.629 0.708 4.8e-149
DICTYBASE|DDB_G0267942 898 DDB_G0267942 "GRAM domain-cont 0.457 0.198 0.256 2.2e-22
RGD|1305443 733 Gramd1b "GRAM domain containin 0.511 0.271 0.227 1.4e-15
TAIR|locus:2205625 598 VAD1 "VASCULAR ASSOCIATED DEAT 0.275 0.178 0.333 2.5e-15
UNIPROTKB|Q3KR37 738 GRAMD1B "GRAM domain-containin 0.514 0.271 0.216 5.2e-15
MGI|MGI:1925037 738 Gramd1b "GRAM domain containin 0.511 0.269 0.222 5.2e-15
UNIPROTKB|Q8IYS0 662 GRAMD1C "GRAM domain-containin 0.390 0.229 0.268 2.6e-14
WB|WBGene00022593 616 ZC328.3 [Caenorhabditis elegan 0.215 0.136 0.326 5.5e-14
POMBASE|SPBC20F10.07 764 SPBC20F10.07 "GRAM domain prot 0.262 0.133 0.341 8.5e-13
MGI|MGI:105490 722 Gramd1a "GRAM domain containin 0.215 0.116 0.344 1.4e-10
TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
 Identities = 267/377 (70%), Positives = 304/377 (80%)

Query:    14 SLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNV 73
             +LD+QGPT+VHQKPGPLQTIF+LLPDE+VEHSYSCALERSFLYHGRMYVSAWHICFHSNV
Sbjct:   215 TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNV 274

Query:    74 FSKQMKVIIPIGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFW 133
             FSKQMKV++P+GDIDEIRRSQHA INPAITIILRMGAGGHGVPPLG+PDGRVRYKFASFW
Sbjct:   275 FSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMGAGGHGVPPLGTPDGRVRYKFASFW 334

Query:   134 NRNHALRQLQRIAKNYHXXXXXXXXXXXXXXXXXHSSSIRGSRR-QAKIAEETVTKPEKL 192
             NRNH L+ LQR   NYH                 HSSS++G  + Q K  E+T   P K 
Sbjct:   335 NRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHSSSVKGGGKVQVKAPEDTAAVPVKF 394

Query:   193 QPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAADEYD 252
             Q FIKEEVLV IYNDVF  T EQ   +L +DDST+TNEYR+ARKD NL +  WH A+EYD
Sbjct:   395 QAFIKEEVLVNIYNDVFASTPEQVLNVLLADDSTYTNEYRSARKDKNLNIEPWHTAEEYD 454

Query:   253 GQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCR 312
             GQVREI FRS+CNSPMCPPDTA+TE+QH VLSPDKK+ VFETVQQ HDVPFGSYFE+HCR
Sbjct:   455 GQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPDKKVLVFETVQQPHDVPFGSYFEVHCR 514

Query:   313 WHLETISENSSTIDIKVGAHFKKWCVMQSKIKTGAVNEYKKEVELMLETARSYIKTRTSG 372
             W LE   E SS IDI+VG HFKKWC+MQSKIK GA++EYKKEVE+MLE A SY+K+ +S 
Sbjct:   515 WRLEAKDETSSVIDIRVGVHFKKWCLMQSKIKAGAIDEYKKEVEVMLEVALSYLKSHSSS 574

Query:   373 GETNN--QSSTPSVTPD 387
                 +  +S+  S TP+
Sbjct:   575 SSHGDIDKSALSSPTPE 591
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1925037 Gramd1b "GRAM domain containing 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00022593 ZC328.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPBC20F10.07 SPBC20F10.07 "GRAM domain protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:105490 Gramd1a "GRAM domain containing 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
cd13219161 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta 2e-78
cd13220111 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr 5e-25
smart0056860 smart00568, GRAM, domain in glucosyltransferases, 4e-18
pfam0289360 pfam02893, GRAM, GRAM domain 9e-13
cd13216117 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 8e-08
cd13217100 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and 6e-06
cd1057094 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran 2e-05
cd13349135 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe 3e-05
cd13351125 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami 2e-04
>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information 
 Score =  238 bits (610), Expect = 2e-78
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 6/162 (3%)

Query: 9   ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDELVEHSYSCALERSFLYHGRMYVSAWHIC 68
           ++    + K+      QK    Q +F L P+E + + ++CAL+R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 69  FHSNVFSKQMKVIIPIGDIDEIRRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 123
           F+SN+F  + K      DI+EI+ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 124 RVRYKFASFWNRNHALRQLQRIAKNYHKMLEAEKKEKAESAL 165
           R+++ F SF + NHA R +  + KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>gnl|CDD|217271 pfam02893, GRAM, GRAM domain Back     alignment and domain information
>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
KOG1032 590 consensus Uncharacterized conserved protein, conta 100.0
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 99.73
smart0056861 GRAM domain in glucosyltransferases, myotubularins 99.64
KOG1032590 consensus Uncharacterized conserved protein, conta 99.12
KOG4347 671 consensus GTPase-activating protein VRP [General f 98.21
PF1447096 bPH_3: Bacterial PH domain 97.64
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 97.53
PF10698159 DUF2505: Protein of unknown function (DUF2505); In 95.55
cd01201108 Neurobeachin Neurobeachin Pleckstrin homology-like 95.29
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 94.05
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 92.44
cd08871222 START_STARD10-like Lipid-binding START domain of m 91.3
PF01852206 START: START domain; InterPro: IPR002913 START (St 90.92
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 89.88
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 88.98
cd00177193 START Lipid-binding START domain of mammalian STAR 88.83
smart00234206 START in StAR and phosphatidylcholine transfer pro 88.76
cd08905209 START_STARD1-like Cholesterol-binding START domain 88.18
cd08870209 START_STARD2_7-like Lipid-binding START domain of 86.7
cd08904204 START_STARD6-like Lipid-binding START domain of ma 86.63
cd08907205 START_STARD8-like C-terminal lipid-binding START d 86.55
PF06115118 DUF956: Domain of unknown function (DUF956); Inter 85.93
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 84.25
smart0068355 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, 83.9
PF0856779 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom 83.42
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 82.91
PF00407151 Bet_v_1: Pathogenesis-related protein Bet v I fami 81.41
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 81.21
KOG4471 717 consensus Phosphatidylinositol 3-phosphate 3-phosp 80.66
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-37  Score=320.48  Aligned_cols=319  Identities=22%  Similarity=0.345  Sum_probs=238.5

Q ss_pred             ccccccccc--cccCCCeeeEEEEeeeeeccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeeccccccc-CcE
Q 016456           26 KPGPLQTIF--NLLPDELVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFIN-PAI  102 (389)
Q Consensus        26 ~~~~f~~lF--~lp~~E~Ll~~f~C~l~~~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~~-~~i  102 (389)
                      ...+|...+  ++|++|.|+.+|+|+|+|.+++|||||+++.||||||+++||+++++||+.+|+.|+|.++++++ ++|
T Consensus       105 ~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i  184 (590)
T KOG1032|consen  105 AGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAI  184 (590)
T ss_pred             cchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcce
Confidence            344455555  38899999999999999999999999999999999999999999999999999999999999875 589


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHHHhhhh-hhhhhhhhhcccccCCC-CCcCCccccc
Q 016456          103 TIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRIAKNYHKML-EAEKKEKAESALRAHSS-SIRGSRRQAK  180 (389)
Q Consensus       103 ~I~~~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~~~~~~~~~~l-~~e~~~~~~s~l~~~ss-~~~gs~~~~~  180 (389)
                      .|.+                ++.+|+|++|.+||.+|.++..+.+.....- .........+....+.. +..++.  ++
T Consensus       185 ~i~t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~--~~  246 (590)
T KOG1032|consen  185 EITT----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNV--DN  246 (590)
T ss_pred             EEec----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccccc--cc
Confidence            8884                2458999999999999997755443321100 00000000000000000 000000  00


Q ss_pred             ccccc-----CCC------CCCCCCCccccccccccceEeecCHHHHHhHhcCCCCchHHHHHHHcCCcceEecccccCC
Q 016456          181 IAEET-----VTK------PEKLQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSTFTNEYRAARKDTNLVMGQWHAAD  249 (389)
Q Consensus       181 ~~e~~-----~~~------~~~~~~~~~e~~~~~v~~~~~~~s~~~lf~llF~d~s~f~~~~~~~~~~~di~~~~W~~~~  249 (389)
                      .+.++     .+.      ......... ...-++.+..+++++..+|.++|+| ..|+..+++.++..++...+|....
T Consensus       247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~-~~~~v~~~~~~s~~~~~~~~~lf~d-~~~~~~~l~~~~~~~vs~~~~~~~~  324 (590)
T KOG1032|consen  247 SQSPSALQNSFDSPKEEELEHDFSCSLS-RLFGVLGRLPFSAPIGAFFSLLFGD-NTFFFFFLEDQDEIQVSPIPWKGPR  324 (590)
T ss_pred             CCCccccccccCCCcccccccccccccc-ccccccccccccccccccceeeccC-cceeeeccccccccccccccccCCC
Confidence            00000     000      000111111 1123677889999999999999994 5577788999999999999999865


Q ss_pred             CCCCeEEEEEEEEecCCCCCCCceeEeEEEEEEEcCCCCeEEEEEEeecCCCCCCCeEEEEEEEEEEecCCCceEEEEEE
Q 016456          250 EYDGQVREITFRSLCNSPMCPPDTAMTEYQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHCRWHLETISENSSTIDIKV  329 (389)
Q Consensus       250 ~~~~~~R~ity~~~l~~~lgpk~t~~~e~Q~~~~~~d~~~~vv~~~~~~~dVPygd~F~v~~r~~it~~~~~~c~l~V~~  329 (389)
                      . +...|.++|+.++..++|||++.|..+|.+.+..-..|+.|...+.+++|||++.|.|.+||+|+|.+++.|++.+++
T Consensus       325 ~-~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~  403 (590)
T KOG1032|consen  325 S-GILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVST  403 (590)
T ss_pred             c-cceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeeccee
Confidence            4 678999999999999999999999999999876555679999999999999999999999999999999999999999


Q ss_pred             eEEEeeeccchhhhhhch--HHHHHHHHHHHHHHHHhh
Q 016456          330 GAHFKKWCVMQSKIKTGA--VNEYKKEVELMLETARSY  365 (389)
Q Consensus       330 ~V~f~K~t~~K~~Ie~~~--~~~~k~~~~~~l~~~~k~  365 (389)
                      +|.|.+++|.+.+++.++  .+.+-+.++.++..+++.
T Consensus       404 ~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~  441 (590)
T KOG1032|consen  404 SVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEEL  441 (590)
T ss_pred             EEEeccCchhhccccccccchhhHHHHHHHHHhccHHH
Confidence            999999999999998866  555666666666644433

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria Back     alignment and domain information
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>smart00683 DM16 Repeats in sea squirt COS41 Back     alignment and domain information
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 74/497 (14%), Positives = 140/497 (28%), Gaps = 168/497 (33%)

Query: 22  VVHQKPGPLQT--IFNLL---PDELVEHSYSCALER--SFLYHG------------RMYV 62
           ++  K     T  +F  L    +E+V+      L     FL               RMY+
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 63  SAWHICFHSN-VFSKQMKVIIPIGDIDEIRRS--QHAFINPAITIILRMGAGGHG----- 114
                 ++ N VF+K   V        ++R++  +   + PA  +++  G  G G     
Sbjct: 114 EQRDRLYNDNQVFAK-YNVSRL-QPYLKLRQALLE---LRPAKNVLID-GVLGSGKTWVA 167

Query: 115 VPPLGSPDGRVRYKFASFW----NRNHA---LRQLQ----RIAKNYHKMLEAEKK----- 158
           +    S   + +  F  FW    N N     L  LQ    +I  N+    +         
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 159 EKAESALR------------------AHSSSIR----GSR-----RQAKIA--------- 182
              ++ LR                   ++ +        +     R  ++          
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 183 -------EETVTKPEKLQPFIK----------EEV---------LVGIYNDVFPCTAEQF 216
                    T+T  E     +K           EV         ++         T + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 217 FTLLFSDDSTF---------TNEYRAA-------RKDTNL---VMGQ-WHAADEYDGQ-- 254
             +     +T            EYR             ++   ++   W    + D    
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 255 VREITFRSLCNSPMCP-----PD-------TAMTEYQ-HAVL----SPDKKIFVFETVQQ 297
           V ++   SL            P            EY  H  +    +  K     + +  
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 298 AHDVPFGSYFEIHCRWHLETISENSSTIDIKVGAHFKKWCV----MQSKIK--TGAVNEY 351
             D     YF  H   HL+ I E+   + +     F+   +    ++ KI+  + A N  
Sbjct: 468 YLD----QYFYSHIGHHLKNI-EHPERMTL-----FRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 352 KKEVELM--LETARSYI 366
              +  +  L+  + YI
Sbjct: 518 GSILNTLQQLKFYKPYI 534

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 95.91
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 93.72
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 93.64
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 93.48
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 92.01
2pso_A237 STAR-related lipid transfer protein 13; alpha and 91.32
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 90.58
1pfj_A108 TFIIH basal transcription factor complex P62 subun 90.33
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 89.91
2yf0_A 512 Myotubularin-related protein 6; hydrolase; 2.65A { 89.55
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 89.43
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 88.92
1t77_A414 Lipopolysaccharide-responsive and beige-like ancho 87.71
2wql_A154 Major allergen DAU C 1; pathogenesis-related prote 87.47
3qsz_A189 STAR-related lipid transfer protein; structural ge 86.53
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
Probab=95.91  E-value=0.22  Score=41.54  Aligned_cols=71  Identities=13%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             ccCCCeeeEEEE-eeeee----ccccceEEEeecCeeeEEeccCCceeEEEEecccceeeeecccccc-cCcEEEEEe
Q 016456           36 LLPDELVEHSYS-CALER----SFLYHGRMYVSAWHICFHSNVFSKQMKVIIPIGDIDEIRRSQHAFI-NPAITIILR  107 (389)
Q Consensus        36 lp~~E~Ll~~f~-C~l~~----~~~~~Grlyit~~~lcFys~~~g~~~~~~i~~~dI~~I~k~~~~~~-~~~i~I~~~  107 (389)
                      |.++|.++.... +-|..    .-...|++|||+++|||...-- ....+.|||..|..++...+.+- .+-|.+...
T Consensus        13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l~   89 (140)
T 2hth_B           13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAGIGKSAKIVVHLH   89 (140)
T ss_dssp             CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCTTSSCCEEEEEEC
T ss_pred             cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccccccCceEEEEec
Confidence            667787775543 44542    2347899999999999976644 35678999999999999987642 234444443
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Back     alignment and structure
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 96.29
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 96.19
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 94.8
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 94.2
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 92.04
d1e09a_159 Major tree pollen allergen {Sweet cherry (Prunus a 91.33
d1xdfa1157 Plant pathogenesis-related protein PR10 {Yellow lu 91.03
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 90.42
d1fm4a_159 Major tree pollen allergen {European white birch ( 90.22
d1icxa_155 Plant pathogenesis-related protein PR10 {Yellow lu 89.33
d1txca1147 Plant pathogenesis-related protein PR10 {Jicama (P 89.3
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 86.78
d2bk0a1153 Major allergen api g 1 {Celery (Apium graveolens) 82.99
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 81.84
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0038  Score=48.34  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             eeEEEEeeeee-ccccceEEEeecCeeeEEeccCC--------------ceeEEEEecccceeeeecccccccCcEEEEE
Q 016456           42 VEHSYSCALER-SFLYHGRMYVSAWHICFHSNVFS--------------KQMKVIIPIGDIDEIRRSQHAFINPAITIIL  106 (389)
Q Consensus        42 Ll~~f~C~l~~-~~~~~Grlyit~~~lcFys~~~g--------------~~~~~~i~~~dI~~I~k~~~~~~~~~i~I~~  106 (389)
                      ++.+-.|.|.. .....|++.||+++|||...-..              ......+|++||..|-+..-..-..||+|.+
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~   82 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFM   82 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEE
Confidence            56778899985 66688999999999999874210              0123468999999999865443345999998


Q ss_pred             ecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHH
Q 016456          107 RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ  143 (389)
Q Consensus       107 ~~g~~~~~~~~~~~~~g~~~~~f~sf~~rd~~~~~l~  143 (389)
                      .              ||+ . .|-.|.+.+..-+.++
T Consensus        83 ~--------------~~~-s-~~~~F~~~~~~~~v~~  103 (110)
T d1t77a2          83 A--------------NRV-A-VMFNFPDPATVKKVVN  103 (110)
T ss_dssp             T--------------TSC-E-EEEECSSHHHHHHHHH
T ss_pred             c--------------CCc-E-EEEEeCCHHHHHHHHH
Confidence            4              453 4 4445776544444443
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure