Citrus Sinensis ID: 016457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MEMEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRSPKTHKKNRHNPY
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEccccccEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEEccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEccccccEEEEEEccccEEEEccccccccccEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccccccEEcccccEEEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEcccccccccccccEEEEEEEccccccccccccccEEEEEcccccEEEEEccccccEEcccccccEEEEccEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEHcccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEccccccccccccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
memeaeesqsqpksqscdnvnsikrfglknsiqtnfgddyvfeivpkndwSLMAVSLSTNVVKlyspvtgqysgeckghsstvnqisfsgpstphvlhscssdgtirawdtrsfhevwsvtagsqeifcfsfggstDYLLAAGCGSQIQFWDWRNKKQVACleeshvedvtqvhfvpnnqnkvvSASVDGLictfdtggdindddLLESVINVGtsvgkvgffgetnkHLWCLTHIetlsiwdwkdgqnvasfenarslasdswtlddvdyfvdchypgegenlwviggtgagtvgyfpvnyggaatigppeavlvgGHTAVvrsvlpmpsvqgrpaqshgifgwtggedgrlccwlsddsseiNRSWISnamvmrspkthkknrhnpy
Flexible Loop (DISEMBL)
memeaeesqsqpksqscdnVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSwisnamvmrspkthkknrhnpy
Low Complexity Region (SEG)
MEMEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRSPKTHKKNRHNPY
Disordered region (IsUnstruct)
*********************SIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK*****************HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS*******************************
Disordered Region (DISOPRED)
**********************IKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD******************************
Disordered Region (DISEMBL)
*****************DNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRS************
Disordered Region (DISPRO)
*EMEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRSPKTHKKNR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRSPKTHKKNRHNPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q54QU5	359	WD repeat-containing prot	yes	no	0.843	0.913	0.323	4e-37
Q5FVP5	386	WD repeat-containing prot	yes	no	0.758	0.764	0.296	4e-23
Q96FK6	387	WD repeat-containing prot	yes	no	0.740	0.744	0.285	1e-22
Q5RBZ3	387	WD repeat-containing prot	yes	no	0.740	0.744	0.285	2e-22
Q9D0R9	386	WD repeat-containing prot	yes	no	0.722	0.727	0.287	4e-22
Q3ZBK1	386	WD repeat-containing prot	yes	no	0.817	0.823	0.284	5e-22
Q2KIG2	334	WD repeat-containing prot	no	no	0.622	0.724	0.224	1e-11
Q498M4	334	WD repeat-containing prot	no	no	0.622	0.724	0.224	1e-11
P61965	334	WD repeat-containing prot	no	no	0.622	0.724	0.224	1e-11
P61964	334	WD repeat-containing prot	no	no	0.622	0.724	0.224	1e-11

>sp|Q54QU5|WDR89_DICDI WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 171/359 (47%), Gaps = 31/359 (8%)

Query: 36  FGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH 95
            GDD  + +      +L+A + S  ++K+Y            GH   +N+  F      +
Sbjct: 23  IGDDTCYVLDLSVTPNLLAAAGSNYLIKIYDRSNNTILNVLSGHKDAINETKF--IENTN 80

Query: 96  VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWR 154
            L SCSSD T++ WDT++     S T   Q EIF     G    +LA G GS +  ++  
Sbjct: 81  TLLSCSSDKTVKIWDTKTGQ--CSQTINQQGEIFSIDLNGD---ILAMGVGSMVVLYNLS 135

Query: 155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG 214
            KK +   + SH EDVT+V F P ++NK+VS SVDGLIC +D     +DDD +  VIN  
Sbjct: 136 TKKMIRKFDCSHTEDVTRVRFHPIDKNKLVSCSVDGLICMYDL-EQADDDDAIVHVINAE 194

Query: 215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF-ENARSLASDSWTLDDVDYFV 273
            S+G +GFFG   ++L+ L+H E L+ WD   G  +  +  + RS  SD +   +++YF+
Sbjct: 195 DSIGNIGFFGSAYQYLYTLSHTERLATWDLTTGLKIKHYGADLRSTLSDRYKF-EINYFI 253

Query: 274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQ 333
            C Y      L + GG   GT   F V       I   E V    HT V+R+V       
Sbjct: 254 SCIYDNASNQLILFGGDFNGTGHVFLVTPDEVIQISKLENV----HTDVIRNVF------ 303

Query: 334 GRPAQSHGIFGWTGGEDGRLCCWLSDDS----SEINRSWISNAM---VMRSPKTHKKNR 385
               +S  I   T  ED ++  W ++ S     +IN    SN M    ++S KT   N+
Sbjct: 304 WDKFKSELI---TSSEDSKIGFWTNNPSITNILKINNDTSSNKMKDDKLKSKKTSPYNK 359

Dictyostelium discoideum (taxid: 44689)

>sp|Q5FVP5|WDR89_RAT WD repeat-containing protein 89 OS=Rattus norvegicus GN=Wdr89 PE=2 SV=1

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 144/334 (43%), Gaps = 39/334 (11%)

Query: 43  EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS 102
           + VP     L+AV  S   +++Y   T     E  G    +N + F+       ++S S+
Sbjct: 33  KTVPAEKGGLVAVLCSNGSIRIYDKETLNLLREFSGSPGLLNGVRFANSCDN--VYSAST 90

Query: 103 DGTIRAWDTRSFHEV-WSVTAGSQEIFCFSFG-GSTDYLLAAGC-----GSQIQFWDWRN 155
           DGT++ WD R   E    +  G       SF     D+++ AG       + + FWD R 
Sbjct: 91  DGTVKCWDARLASEKPAQLFKGYPSNIFISFDVNCKDHIICAGAEKVEDDALLVFWDARF 150

Query: 156 KKQ-------VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE 208
             Q       +    E+H +D+TQV F P+N N VVS S DGL+  FD   D N++D L 
Sbjct: 151 TSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDLSVD-NEEDALV 209

Query: 209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL-ASDSWTLD 267
           +  N  +SV  +G+ G   K ++C+TH E    WD     ++ + E    L   D   + 
Sbjct: 210 ATCNSVSSVSCIGWCGRDYKQIYCMTHDEGFCWWDL---NHLDTDEPITCLNIQDVRDVT 266

Query: 268 DV-----DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV 322
           DV     DY +   Y    + L+VIGGT  G +        G + +      L GGH A 
Sbjct: 267 DVKEGHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGLSHV----TSLQGGHAAT 322

Query: 323 VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
           VRS     S              TGGED +L  W
Sbjct: 323 VRSFCWTVSEDSL---------LTGGEDAQLLLW 347

Rattus norvegicus (taxid: 10116)

>sp|Q96FK6|WDR89_HUMAN WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=1 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 142/326 (43%), Gaps = 38/326 (11%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           +L+AV  S   +++Y         E  G+   +N + F+       ++S  +DGT++ WD
Sbjct: 41  NLVAVLCSNGSIRIYDKERLNVLREFSGYPGLLNGVRFANSCDS--VYSACTDGTVKCWD 98

Query: 111 TRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWR--------N 155
            R   E  V         IF        D+++ AG       + + FWD R         
Sbjct: 99  ARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDALLVFWDARMNSQNLSTT 158

Query: 156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT 215
           K  +    E+H +DVTQV F P+N N VVS S DGL+  FD   D N++D L +  N  +
Sbjct: 159 KDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINID-NEEDALVTTCNSIS 217

Query: 216 SVGKVGFFGETNKHLWCLTHIETLSIWDWK-----DGQNVASFENARSLASDSWTLDDVD 270
           SV  +G+ G+  K ++C+TH E    WD       +     + ++ R +   +   D +D
Sbjct: 218 SVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVV--NMKEDALD 275

Query: 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP 330
           Y +   Y  + + L VIGGT  G +     +  G   +      L GGH A VRS     
Sbjct: 276 YLIGGLYHEKTDTLHVIGGTNKGRIHLMNCSMSGLTHVTS----LQGGHAATVRSFC--- 328

Query: 331 SVQGRPAQSHGIFGWTGGEDGRLCCW 356
                  Q   +   TGGED +L  W
Sbjct: 329 ----WNVQDDSLL--TGGEDAQLLLW 348

Homo sapiens (taxid: 9606)

>sp|Q5RBZ3|WDR89_PONAB WD repeat-containing protein 89 OS=Pongo abelii GN=WDR89 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 142/326 (43%), Gaps = 38/326 (11%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           +L+AV  S   +++Y         E  G+   +N + F+       ++S  +DGT++ WD
Sbjct: 41  NLVAVLCSNGSIRIYDKERLSVLREFSGYPGLLNGVRFANSCDS--VYSACTDGTVKCWD 98

Query: 111 TRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQ----- 158
            R   E  V         IF        D+++ AG       + + FWD R   Q     
Sbjct: 99  ARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDALLVFWDARMNSQDLSTT 158

Query: 159 ---VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT 215
              +    E+H +DVTQV F P+N N VVS S DGL+  FD   D N++D L +  N  +
Sbjct: 159 KDPLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINID-NEEDALVTTCNSIS 217

Query: 216 SVGKVGFFGETNKHLWCLTHIETLSIWDWK-----DGQNVASFENARSLASDSWTLDDVD 270
           SV  +G+ G+  K ++C+TH E    WD       +     + ++ R +   +   D +D
Sbjct: 218 SVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVV--NMKEDALD 275

Query: 271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP 330
           Y +   Y  + + L VIGGT  G +     +  G   +      L GGH A VRS     
Sbjct: 276 YLIGGLYHEKTDTLHVIGGTNKGRIHLMNCSVSGLTHVTS----LQGGHAATVRSFC--- 328

Query: 331 SVQGRPAQSHGIFGWTGGEDGRLCCW 356
                  Q   +   TGGED +L  W
Sbjct: 329 ----WNVQDDSLL--TGGEDAQLLLW 348

Pongo abelii (taxid: 9601)

>sp|Q9D0R9|WDR89_MOUSE WD repeat-containing protein 89 OS=Mus musculus GN=Wdr89 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 142/330 (43%), Gaps = 49/330 (14%)

Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
           L+AV  S   +++Y   T     E  G    ++ +SF+       ++S S+DGT++ WD 
Sbjct: 42  LVAVLCSNGSIRIYDKETLHLLREFGGSPGLLSGVSFANSCDS--VYSASTDGTVKCWDA 99

Query: 112 RSFHEV-WSVTAGSQEIFCFSFG-GSTDYLLAAGC-----GSQIQFWDWRNKKQ------ 158
           R   E    +  G       SF     D+++ AG       + + FWD R   Q      
Sbjct: 100 RGASEKPVQLFKGYPSCSFISFDVNCKDHVICAGAEKVDEDALLVFWDARFTSQDLSTRD 159

Query: 159 -VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217
            +    E+H +D+TQV F P+N N VVS S DGL+  FD   D  ++D L +  N  +SV
Sbjct: 160 PLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSAD-KEEDALVATCNSVSSV 218

Query: 218 GKVGFFGETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTLD-DVDYFVD 274
             +G+ G+  K ++C+TH E    WD    D     +  N + +   +   D  +DY + 
Sbjct: 219 SCIGWCGKDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREITDVKDGHLDYLIG 278

Query: 275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG 334
             Y  + + L+VIGGT  G +        G   +      L GGH A VRS         
Sbjct: 279 GLYHEKMDRLFVIGGTNTGKIHLLSCTSAGLTHV----TSLHGGHAATVRS--------- 325

Query: 335 RPAQSHGIFGW--------TGGEDGRLCCW 356
                   F W        TGGED +L  W
Sbjct: 326 --------FCWNVSEDSLLTGGEDAQLLLW 347

Mus musculus (taxid: 10090)

>sp|Q3ZBK1|WDR89_BOVIN WD repeat-containing protein 89 OS=Bos taurus GN=WDR89 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 155/358 (43%), Gaps = 40/358 (11%)

Query: 19  NVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG 78
           N+N +KR           G D   + V     SL+AV  S   ++++         E +G
Sbjct: 10  NLNIVKRSSETKEPTYLLGID-TSKTVQTEKGSLVAVLCSNGSIRIHDKERLNVIREFRG 68

Query: 79  HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR--SFHEVWSVTAGSQEIFCFSFGGST 136
           +   +N + F+  S   V  SC+ DGT++ WD R  S   V         IF      S 
Sbjct: 69  YPG-LNGVKFAN-SHDSVYSSCT-DGTVKCWDARLASGKPVQLFKGYPSNIFISFDISSN 125

Query: 137 DYLLAAGC-----GSQIQFWDWR--------NKKQVACLEESHVEDVTQVHFVPNNQNKV 183
           D+++ AG       + + FWD R         K+ +    E+H +D+TQV F P+N N V
Sbjct: 126 DHVICAGTEKVDDDALLVFWDARINSQDLSTTKEPLGAYSETHSDDITQVRFHPSNPNMV 185

Query: 184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD 243
           VS S DGL+  FD   D N+DD L +  N  +SV  +G+ G+  K ++C+TH E    WD
Sbjct: 186 VSGSTDGLVNVFDISAD-NEDDALVTTCNSVSSVSFIGWSGKDYKQIYCMTHDEGFCWWD 244

Query: 244 WK-----DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298
                  +     +  + R + +    +  +DY +   Y  + + L+V+GGT  G +   
Sbjct: 245 LNHLDTDEPITCLNVPDVREVINVKEGI--LDYLIGGLYHEKTDKLFVVGGTNTGIIRIM 302

Query: 299 PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
                G   +      L GGH A VRS            Q   +   TGGED +L  W
Sbjct: 303 NCMTSGLVHVTS----LQGGHAATVRSFC-------WNMQDDSLL--TGGEDAQLLLW 347

Bos taurus (taxid: 9913)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)

Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 9   ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 67  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)

Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 9   ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 67  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)

Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 9   ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 67  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)

Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 9   ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 67  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
225437332	388	PREDICTED: WD repeat-containing protein	0.982	0.984	0.741	1e-168
147768839	383	hypothetical protein VITISV_023641 [Viti	0.974	0.989	0.739	1e-167
255564130	389	WD-repeat protein, putative [Ricinus com	0.940	0.940	0.75	1e-164
224068328	378	predicted protein [Populus trichocarpa]	0.961	0.989	0.746	1e-163
356505570	389	PREDICTED: WD repeat-containing protein	0.969	0.969	0.721	1e-161
255637437	389	unknown [Glycine max]	0.969	0.969	0.710	1e-159
363806754	389	uncharacterized protein LOC100794786 [Gl	0.969	0.969	0.697	1e-156
224128502	372	predicted protein [Populus trichocarpa]	0.953	0.997	0.739	1e-154
357511281	378	WD repeat-containing protein-like protei	0.966	0.994	0.676	1e-151
388510634	378	unknown [Medicago truncatula]	0.966	0.994	0.676	1e-151

>gi|225437332|ref|XP_002264804.1| PREDICTED: WD repeat-containing protein 89 homolog [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/390 (74%), Positives = 328/390 (84%), Gaps = 8/390 (2%)

Query: 2   EMEA-EESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTN 60
           EM+A EE + QP      N NS+KRF LKNSIQTNFGDDYVF+IV ++DW+ MAVSLSTN
Sbjct: 5   EMDAMEEEEPQP------NPNSLKRFALKNSIQTNFGDDYVFQIVARDDWTAMAVSLSTN 58

Query: 61  VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
            VKLYSPVTGQY GEC+GHS+T+N ISFSGP   H+LHSCSSDGTIRAWDTR+F++V  +
Sbjct: 59  AVKLYSPVTGQYLGECRGHSTTINHISFSGPGNSHILHSCSSDGTIRAWDTRTFNQVLCI 118

Query: 121 TAGS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +AGS QE+F FS GG  DYLLAAGC SQI FWDWRNKKQVACLE+SHV+DVTQVHFVP++
Sbjct: 119 SAGSSQEVFSFSIGGLGDYLLAAGCKSQILFWDWRNKKQVACLEDSHVDDVTQVHFVPSD 178

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
           +NK+VSASVDGLICTFDT GDINDDD LESVINV TS+GKVGF G+T + LWCLTHIETL
Sbjct: 179 KNKLVSASVDGLICTFDTVGDINDDDHLESVINVDTSIGKVGFLGDTYQKLWCLTHIETL 238

Query: 240 SIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP 299
           S+WDWK+ +  A+F++ARSLASDSWTLD V+YFVDCHY G+ + LWVIGGT AGT+GYFP
Sbjct: 239 SVWDWKEARIEANFQDARSLASDSWTLDRVNYFVDCHYSGDDQRLWVIGGTNAGTLGYFP 298

Query: 300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD 359
           VNY G   IGPPEAVL GGHT VVRSVLPM S Q   AQS GIFGWTGGEDGRLCCW SD
Sbjct: 299 VNYQGMGAIGPPEAVLEGGHTGVVRSVLPMSSKQIGTAQSQGIFGWTGGEDGRLCCWFSD 358

Query: 360 DSSEINRSWISNAMVMRSPKTHKKNRHNPY 389
            S E NRSWIS+  VM+SP+T KKNRH PY
Sbjct: 359 GSPETNRSWISSEFVMKSPRTCKKNRHLPY 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768839|emb|CAN75889.1| hypothetical protein VITISV_023641 [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/388 (73%), Positives = 324/388 (83%), Gaps = 9/388 (2%)

Query: 3   MEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVV 62
           ME EE Q  P        NS+KRF LKNSIQTNFGDDYVF+IV ++DW+ MAVSLSTN V
Sbjct: 4   MEEEEPQPNP--------NSLKRFALKNSIQTNFGDDYVFQIVARDDWTAMAVSLSTNAV 55

Query: 63  KLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA 122
           KLYSPVTGQY GEC+GHS+T+N ISFSGP   H+LHSCSSDGTIRAWDTR+F++V  ++A
Sbjct: 56  KLYSPVTGQYLGECRGHSTTINHISFSGPGNSHILHSCSSDGTIRAWDTRTFNQVLCISA 115

Query: 123 GS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
           GS QE+F FS GG  DYLLAAGC SQI FWDWRNKKQVACLE+SHV+DVTQVHFVP+++N
Sbjct: 116 GSSQEVFSFSIGGLGDYLLAAGCKSQILFWDWRNKKQVACLEDSHVDDVTQVHFVPSDKN 175

Query: 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI 241
           K+VSASVDGLICTFDT GDINDDD LESVINV TS+GKVGF G+T + LWCLTHIETLS+
Sbjct: 176 KLVSASVDGLICTFDTVGDINDDDHLESVINVDTSIGKVGFLGDTYQKLWCLTHIETLSV 235

Query: 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301
           WDWK+ +  A+F++ARSLASDSWTLD V+YFVDCHY G+ + LWVIGGT AGT+GYFPVN
Sbjct: 236 WDWKEARIEANFQDARSLASDSWTLDRVNYFVDCHYSGDDQRLWVIGGTNAGTLGYFPVN 295

Query: 302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361
           Y G   IGPPEAVL GGHT VVRSVLPM S Q   AQS GIFGWTGGEDGRLCCW SD S
Sbjct: 296 YQGMGAIGPPEAVLEGGHTGVVRSVLPMSSKQIGTAQSQGIFGWTGGEDGRLCCWFSDGS 355

Query: 362 SEINRSWISNAMVMRSPKTHKKNRHNPY 389
            E NRSWIS+  VM+SP+T KKNRH PY
Sbjct: 356 PETNRSWISSEFVMKSPRTCKKNRHLPY 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564130|ref|XP_002523062.1| WD-repeat protein, putative [Ricinus communis] gi|223537624|gb|EEF39247.1| WD-repeat protein, putative [Ricinus communis]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/368 (75%), Positives = 316/368 (85%), Gaps = 2/368 (0%)

Query: 24  KRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTV 83
           KRFGLK+  QTNFGDDYVF+IVPK D S MAVSLST  VKLYSP+TGQY GECKGHS T+
Sbjct: 22  KRFGLKSCFQTNFGDDYVFQIVPKADCSTMAVSLSTYAVKLYSPLTGQYQGECKGHSDTI 81

Query: 84  NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAA 142
           NQI+FS  S+PHVLHSCSSDGT+RAWDTR+F +V  +TA  SQEIF FSFGGSTD LLAA
Sbjct: 82  NQIAFSASSSPHVLHSCSSDGTMRAWDTRTFRQVSCITAAASQEIFSFSFGGSTDNLLAA 141

Query: 143 GCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN 202
           G  SQI FWDWRNKKQVACLEESH +DVTQVHFVP + NK++SASVDGL+C FDT GDIN
Sbjct: 142 GSKSQILFWDWRNKKQVACLEESHTDDVTQVHFVPGHGNKLLSASVDGLMCIFDTNGDIN 201

Query: 203 DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD 262
           DDD LESVINVGTSVGKVGFFGE  + LWCLTHIE+LSIWDW+D +N A+ + ARS+AS 
Sbjct: 202 DDDHLESVINVGTSVGKVGFFGENYQKLWCLTHIESLSIWDWEDARNEANLQEARSMASK 261

Query: 263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY-GGAATIGPPEAVLVGGHTA 321
           +W LD +DYFVDCHYPGEGE+LWVIGGT AG +GYFPVNY GGAA IG PEA+L GGH+ 
Sbjct: 262 NWALDQIDYFVDCHYPGEGESLWVIGGTNAGALGYFPVNYRGGAAAIGSPEAILEGGHSG 321

Query: 322 VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAMVMRSPKTH 381
           VVRS+LP+ S++G PAQS GIFGWTGGEDGRLCCWLSD+S+ I+RSW+S+A+ MRS  + 
Sbjct: 322 VVRSILPLSSLKGGPAQSQGIFGWTGGEDGRLCCWLSDNSARIDRSWMSSALAMRSSTSR 381

Query: 382 KKNRHNPY 389
           KKNRH+PY
Sbjct: 382 KKNRHHPY 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068328|ref|XP_002302707.1| predicted protein [Populus trichocarpa] gi|222844433|gb|EEE81980.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/391 (74%), Positives = 322/391 (82%), Gaps = 17/391 (4%)

Query: 3   MEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVV 62
           ME EE    PKS         K+ GLKNSIQTNFG+DYVF+IVPK+DWS MAVSLST  V
Sbjct: 1   MEVEE----PKS---------KKLGLKNSIQTNFGNDYVFQIVPKDDWSSMAVSLSTKAV 47

Query: 63  KLYSPVTGQYSGECKGHSSTVNQISFSGPST---PHVLHSCSSDGTIRAWDTRSFHEVWS 119
           KLYSP TGQ+ GECKGHS T+NQISFS  S+   PHVLHSCSSDGTIRAWDTR+F +V  
Sbjct: 48  KLYSPETGQFQGECKGHSDTINQISFSVSSSSSSPHVLHSCSSDGTIRAWDTRTFQQVSC 107

Query: 120 VTAGS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN 178
           ++AGS QEIF FSFGGS D LLAAG  SQI FWDWRN KQVACLEESH EDVTQVHFVP+
Sbjct: 108 ISAGSYQEIFSFSFGGSNDNLLAAGAKSQILFWDWRNGKQVACLEESHTEDVTQVHFVPD 167

Query: 179 NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET 238
           N+NK++SASVDGL+C F+T GDINDDD LESVINVGTS+GKVGFFGET K LWCLTHIE+
Sbjct: 168 NRNKLLSASVDGLMCIFNTDGDINDDDHLESVINVGTSIGKVGFFGETYKKLWCLTHIES 227

Query: 239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298
           LSIWDWKD +N A+   ARSLASDSWTLD VDYFVDCHYPGEGE+LWVIGGT AG +GYF
Sbjct: 228 LSIWDWKDARNEANLLEARSLASDSWTLDHVDYFVDCHYPGEGESLWVIGGTNAGALGYF 287

Query: 299 PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358
           PVNY G   IG PEA+L GGHT VVRSVLP+ S +G  AQS  IFGWTGGEDGRLCCWLS
Sbjct: 288 PVNYRGVGAIGSPEAILGGGHTGVVRSVLPVSSKKGGLAQSQSIFGWTGGEDGRLCCWLS 347

Query: 359 DDSSEINRSWISNAMVMRSPKTHKKNRHNPY 389
           DDS+EINRSWIS+A+VM+  K  KK RHNPY
Sbjct: 348 DDSTEINRSWISSALVMKPSKARKKKRHNPY 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505570|ref|XP_003521563.1| PREDICTED: WD repeat-containing protein 89 homolog [Glycine max]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/380 (72%), Positives = 314/380 (82%), Gaps = 3/380 (0%)

Query: 13  KSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY 72
           + Q   N N++KRFGLKNSIQTNFGDDYVF+IVPK DWS MAVSLSTN VKLYSPV GQY
Sbjct: 10  EDQPSPNSNNVKRFGLKNSIQTNFGDDYVFQIVPKEDWSAMAVSLSTNAVKLYSPVAGQY 69

Query: 73  SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFS 131
            GE KGHS TVNQISFSGPS PH+L SCSSDGTIRAWD R+F +V S+ AG SQE+F F 
Sbjct: 70  FGEFKGHSETVNQISFSGPSNPHILCSCSSDGTIRAWDARTFQQVSSINAGPSQEVFSFC 129

Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
            GG++  L+AAGC SQ+ FWDWRN KQVACL +SHV+DVTQVHFVPN + K++SASVDGL
Sbjct: 130 MGGTSGNLVAAGCKSQVLFWDWRNMKQVACLVDSHVDDVTQVHFVPNERGKLISASVDGL 189

Query: 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251
           ICTFDT GDINDDD LESVIN+GTS+ KVG FGET + LWCLTHIETL IW+WKDG N  
Sbjct: 190 ICTFDTTGDINDDDHLESVINMGTSIAKVGIFGETFQKLWCLTHIETLGIWNWKDGSNEG 249

Query: 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPP 311
           +F +AR+LAS+SW LD VDYF+DCHY  E E LWVIGGT AGT+GYFPVNY G ATIG  
Sbjct: 250 NFLDARTLASESWNLDHVDYFIDCHYSREAEKLWVIGGTNAGTMGYFPVNYKGVATIGAA 309

Query: 312 EAVLVGGHTAVVRSVLPMPSVQGRPAQ--SHGIFGWTGGEDGRLCCWLSDDSSEINRSWI 369
           EA+L GGHT+V+RSVLPM ++   P    S GIFGWTGGEDGRLCCWLSDDSSE N+SWI
Sbjct: 310 EAILEGGHTSVIRSVLPMSTIPSGPTNSPSQGIFGWTGGEDGRLCCWLSDDSSESNQSWI 369

Query: 370 SNAMVMRSPKTHKKNRHNPY 389
           S+ + M++ +THKKNRH+PY
Sbjct: 370 SSTLTMKAERTHKKNRHHPY 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637437|gb|ACU19046.1| unknown [Glycine max]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/380 (71%), Positives = 310/380 (81%), Gaps = 3/380 (0%)

Query: 13  KSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY 72
           + Q   N N++KRFGLKNSIQTNFGDDYVF+IVPK DWS MAVSLSTN VKLYSPV GQY
Sbjct: 10  EDQPSPNSNNVKRFGLKNSIQTNFGDDYVFQIVPKEDWSAMAVSLSTNAVKLYSPVAGQY 69

Query: 73  SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFS 131
            GE KGHS TVNQISFSGPS PH+L SCSSDGTIRAWD R+F +V S+ AG SQE+F F 
Sbjct: 70  FGEFKGHSETVNQISFSGPSNPHILCSCSSDGTIRAWDARTFQQVSSINAGPSQEVFSFC 129

Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
            GG++  L+AAGC SQ+ FWDWRN KQVACL +SHV+DVTQVHFVPN + K++SASVDGL
Sbjct: 130 MGGTSGNLVAAGCKSQVLFWDWRNMKQVACLVDSHVDDVTQVHFVPNERGKLISASVDGL 189

Query: 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251
           ICTFDT GDIN+DD LESVIN+GTS+ KVG FGET + LWCLTHIETL IW+WKDG N  
Sbjct: 190 ICTFDTTGDINEDDHLESVINMGTSIAKVGIFGETFQKLWCLTHIETLGIWNWKDGSNEG 249

Query: 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPP 311
            F +AR+LAS+SW LD VDYF+DCHY  E E LWVIGGT  GT+GYFPVNY G ATIG  
Sbjct: 250 DFLDARTLASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYKGVATIGAA 309

Query: 312 EAVLVGGHTAVVRSVLPMPSVQGRPAQ--SHGIFGWTGGEDGRLCCWLSDDSSEINRSWI 369
           EA+  GGHT+V+RSVLPM ++   P    S GIFGWTGGEDGRLCCWLSDDS E N+SWI
Sbjct: 310 EAIFEGGHTSVIRSVLPMSTIPSGPTNSPSQGIFGWTGGEDGRLCCWLSDDSFESNQSWI 369

Query: 370 SNAMVMRSPKTHKKNRHNPY 389
           S+ + M++ +THKKNRH+PY
Sbjct: 370 SSTLTMKAERTHKKNRHHPY 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806754|ref|NP_001242532.1| uncharacterized protein LOC100794786 [Glycine max] gi|255648395|gb|ACU24648.1| unknown [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/380 (69%), Positives = 307/380 (80%), Gaps = 3/380 (0%)

Query: 13  KSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY 72
           + Q   N + +KRFGLKNSIQTNFGDDYVF+IVP +DWS MAVSLSTN VKLYSPV GQY
Sbjct: 10  EEQPSPNASDVKRFGLKNSIQTNFGDDYVFQIVPNDDWSAMAVSLSTNAVKLYSPVAGQY 69

Query: 73  SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFS 131
            GECKGHS T+NQI FSGP  PHVL SCSSDGTIRAWD R+F +V S+ AG SQE+F F 
Sbjct: 70  YGECKGHSETINQILFSGPPNPHVLCSCSSDGTIRAWDIRTFQQVSSINAGPSQEVFSFC 129

Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
            GG+   L+AAGC SQI FWDWRN KQVACLE+SHV+DVTQVHFVPN Q K++SASVDGL
Sbjct: 130 IGGTGGNLVAAGCKSQILFWDWRNMKQVACLEDSHVDDVTQVHFVPNEQGKLISASVDGL 189

Query: 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251
           ICTFD  GDINDDD LESVIN+GTS+ KVG FGE  + LWCLTHIETL IW+WKDG+N  
Sbjct: 190 ICTFDATGDINDDDHLESVINMGTSIAKVGIFGENYQKLWCLTHIETLGIWNWKDGRNEG 249

Query: 252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPP 311
           +F +AR++AS+SW LD VDYF+DCHY  E E LWVIGGT  GT+GYFPVNY G ATIG  
Sbjct: 250 NFSDARTIASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYEGVATIGAA 309

Query: 312 EAVLVGGHTAVVRSVLPMPSVQGRP--AQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWI 369
           EA+L GGH +V+RSVLPM ++   P  + S GIFGW+GGEDGRLCCWLSDDSSE N+ WI
Sbjct: 310 EAILEGGHASVIRSVLPMSTIPSGPTNSPSQGIFGWSGGEDGRLCCWLSDDSSESNQPWI 369

Query: 370 SNAMVMRSPKTHKKNRHNPY 389
           S+ + M+  +T KK+RH+PY
Sbjct: 370 SSTLTMKPERTCKKHRHHPY 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128502|ref|XP_002320348.1| predicted protein [Populus trichocarpa] gi|222861121|gb|EEE98663.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/388 (73%), Positives = 326/388 (84%), Gaps = 17/388 (4%)

Query: 3   MEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVV 62
           ME EE    PKS         K+FGLKNSIQTNFG+DYVF+IVPK+DWS +AVSLST  V
Sbjct: 1   MEIEE----PKS---------KKFGLKNSIQTNFGNDYVFQIVPKDDWSSVAVSLSTKAV 47

Query: 63  KLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA 122
           KLYSPVTGQ+ GECKGHS T+NQI+FS  S+PH+LHSCSSDGTIRAWDTR+F +V  + +
Sbjct: 48  KLYSPVTGQFQGECKGHSDTINQIAFSVSSSPHLLHSCSSDGTIRAWDTRNFQQVSCIDS 107

Query: 123 GS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
           GS QEIF FSFGGS D LLAAG  SQ+ FWDWRN KQVACLEESH+EDVTQVHFVP+N+N
Sbjct: 108 GSSQEIFSFSFGGSNDNLLAAGAKSQVLFWDWRNGKQVACLEESHIEDVTQVHFVPDNRN 167

Query: 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI 241
           K++SASVDGL+C F+T GDINDDD LESVINVGTS+GKVGFFGET + LWCLTHIE+LSI
Sbjct: 168 KLLSASVDGLMCIFNTDGDINDDDDLESVINVGTSIGKVGFFGETYQKLWCLTHIESLSI 227

Query: 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301
           WDWKD +N A+F  ARSLASDSWTLD VDYFVDCHYPGEG++LW+IGGT AG +GYFPVN
Sbjct: 228 WDWKDSRNEANFLEARSLASDSWTLDHVDYFVDCHYPGEGDSLWLIGGTNAGALGYFPVN 287

Query: 302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361
           + G   IG PEA+L GGHT VVRSVLPM S++G PAQS GIFGWTGGEDGRLCCWLSDDS
Sbjct: 288 HKG---IGSPEAILGGGHTGVVRSVLPMSSMKGGPAQSRGIFGWTGGEDGRLCCWLSDDS 344

Query: 362 SEINRSWISNAMVMRSPKTHKKNRHNPY 389
           + INRSWIS+A+V +SPK  KK R  PY
Sbjct: 345 TGINRSWISSALVKKSPKARKKKRRTPY 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511281|ref|XP_003625929.1| WD repeat-containing protein-like protein [Medicago truncatula] gi|355500944|gb|AES82147.1| WD repeat-containing protein-like protein [Medicago truncatula]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/389 (67%), Positives = 310/389 (79%), Gaps = 13/389 (3%)

Query: 3   MEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVV 62
           M+ EE +  P        N++KRFGLKNSIQTNFGDDYVF+I+PK+DWS MAVSLSTN V
Sbjct: 1   MDVEEQRPFPIP------NNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAV 54

Query: 63  KLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA 122
           KLYSPV GQY GECKGH++T+NQI FSG S P++L SCSSDGTIR WDTR+F +V  + A
Sbjct: 55  KLYSPVMGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINA 114

Query: 123 G-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
           G SQEIF FS GG +  L+AAGC SQ+  WDWRN KQ+ACLE+SHV+DVTQVHF+P  + 
Sbjct: 115 GPSQEIFSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERG 174

Query: 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI 241
           K++SASVDGL+C FDT GDINDDD LESVINVGTS+ KVGFFGE+ + LWCLTHIETL I
Sbjct: 175 KLISASVDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLGI 234

Query: 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301
           WDWK+G+N  +F + R+LAS+SW LD VDYFVDCHY  E E LW+IGGT AGT+G+FPVN
Sbjct: 235 WDWKEGRNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLWLIGGTNAGTLGFFPVN 294

Query: 302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361
           Y    TIG  EA+L GGHT VVRSVLPM  V      S GIFGWTGGEDGRLCCWLSDD 
Sbjct: 295 YSETTTIGGAEAILEGGHTDVVRSVLPMSRV-----HSSGIFGWTGGEDGRLCCWLSDDD 349

Query: 362 S-EINRSWISNAMVMRSPKTHKKNRHNPY 389
           S + N+SWIS+++VM+  +T KKNRH+PY
Sbjct: 350 SPQKNQSWISSSLVMKPERTCKKNRHHPY 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510634|gb|AFK43383.1| unknown [Medicago truncatula]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/389 (67%), Positives = 310/389 (79%), Gaps = 13/389 (3%)

Query: 3   MEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVV 62
           M+ EE +  P        N++KRFGLKNSIQTNFGDDYVF+I+PK+DWS MAVSLSTN V
Sbjct: 1   MDVEEQRPFPIP------NNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAV 54

Query: 63  KLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA 122
           KLYSPV GQY GECKGH++T+NQI FSG S P++L SCSSDGTIR WDTR+F +V  + A
Sbjct: 55  KLYSPVMGQYYGECKGHTATINQILFSGHSNPNILGSCSSDGTIRTWDTRTFQQVSIINA 114

Query: 123 G-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
           G SQEIF FS GG +  L+AAGC SQ+  WDWRN KQ+ACLE+SHV+DVTQVHF+P  + 
Sbjct: 115 GPSQEIFSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERG 174

Query: 182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI 241
           K++SASVDGL+C FDT GDINDDD LESVINVGTS+ KVGFFGE+ + LWCLTHIETL I
Sbjct: 175 KLISASVDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLGI 234

Query: 242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN 301
           WDWK+G+N  +F + R+LAS+SW LD VDYFVDCHY  E E LW+IGGT AGT+G+FPVN
Sbjct: 235 WDWKEGRNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLWLIGGTNAGTLGFFPVN 294

Query: 302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS 361
           Y    TIG  EA+L GGHT VVRSVLPM  V      S GIFGWTGGEDGRLCCWLSDD 
Sbjct: 295 YSETTTIGGAEAILEGGHTDVVRSVLPMSRV-----HSSGIFGWTGGEDGRLCCWLSDDD 349

Query: 362 S-EINRSWISNAMVMRSPKTHKKNRHNPY 389
           S + N+SWIS+++VM+  +T KKNRH+PY
Sbjct: 350 SPQKNQSWISSSLVMKPERTCKKNRHHPY 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2043393	392	AT2G47790 "AT2G47790" [Arabido	0.982	0.974	0.691	5.7e-146
DICTYBASE|DDB_G0283635	359	wdr89 "WD40 repeat-containing	0.881	0.955	0.328	2.1e-38
MGI|MGI:1919588	386	Wdr89 "WD repeat domain 89" [M	0.742	0.748	0.298	4e-26
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.622	0.724	0.232	8.3e-15
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.622	0.724	0.228	1.9e-14
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.622	0.724	0.228	1.9e-14
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.622	0.724	0.228	1.9e-14
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.622	0.724	0.228	1.9e-14
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.622	0.724	0.224	6e-14
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.508	0.642	0.235	1.9e-13

TAIR|locus:2043393 AT2G47790 "AT2G47790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 271/392 (69%), Positives = 311/392 (79%)

Query:     2 EMEAEESQSQPKSQSCDNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNV 61
             EME E  Q++  S S    N +K+FGLKNSIQTNFG DYVF+IVPK DW+ +AVSLSTN 
Sbjct:     7 EMEVEV-QNRQLSDSSPAQN-VKKFGLKNSIQTNFGSDYVFQIVPKIDWTAIAVSLSTNT 64

Query:    62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPS--TPHVLHSCSSDGTIRAWDTRSFHEVWS 119
             VKLYSPVTGQY GECKGHS TVNQI+FS  S  +PHVLHSCSSDGTIR+WDTRSF +V  
Sbjct:    65 VKLYSPVTGQYYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSR 124

Query:   120 VTAGS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN 178
             +  G+ QEIF FS+GG+ D LLA GC  Q+  WDWRN KQVACLEESH++DVTQVHFVPN
Sbjct:   125 IDTGNDQEIFSFSYGGAADNLLAGGCKEQVLLWDWRNSKQVACLEESHMDDVTQVHFVPN 184

Query:   179 NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET 238
               NK++SASVDGLIC F+T GDINDDD LESVINVGTS+GK+GF G+  K LWCLTHIET
Sbjct:   185 KPNKLLSASVDGLICLFNTEGDINDDDHLESVINVGTSIGKIGFLGDGYKKLWCLTHIET 244

Query:   239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF 298
             LSIW+W+DG    + E AR LASDSWT D+VDYFVDCH PG GE+LWVIGGT AGTVGYF
Sbjct:   245 LSIWNWEDGSCEVNLEKARELASDSWTQDNVDYFVDCHCPG-GEDLWVIGGTCAGTVGYF 303

Query:   299 PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS 358
             PVNY    +IG  EA+L GGH  VVRSVL MP   G  A   G+FGWTGGEDGRLCCW S
Sbjct:   304 PVNYKQPGSIGTAEAILGGGHIDVVRSVLQMPGEYGGAA---GLFGWTGGEDGRLCCWKS 360

Query:   359 D-DSSEINRSWISNAMVMRSPKTHKKNRHNPY 389
             D D++EINRSW S+ +V++ P+  KKNRH+PY
Sbjct:   361 DEDATEINRSWTSSELVVKPPRNRKKNRHSPY 392

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

DICTYBASE|DDB_G0283635 wdr89 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 126/383 (32%), Positives = 182/383 (47%)

Query:    18 DNVNSIKRFGLKNSI---QTNFGDD--YVFEI-VPKNDWSLMAVSLSTNVVKLYSPVTGQ 71
             D + S   F   NSI     + GDD  YV ++ V  N   L+A + S  ++K+Y      
Sbjct:     2 DQLISQLNFKSHNSIIHSVDSIGDDTCYVLDLSVTPN---LLAAAGSNYLIKIYDRSNNT 58

Query:    72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCF 130
                   GH   +N+  F      + L SCSSD T++ WDT++     S T   Q EIF  
Sbjct:    59 ILNVLSGHKDAINETKFI--ENTNTLLSCSSDKTVKIWDTKTGQ--CSQTINQQGEIFSI 114

Query:   131 SFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG 190
                G    +LA G GS +  ++   KK +   + SH EDVT+V F P ++NK+VS SVDG
Sbjct:   115 DLNGD---ILAMGVGSMVVLYNLSTKKMIRKFDCSHTEDVTRVRFHPIDKNKLVSCSVDG 171

Query:   191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV 250
             LIC +D     +DDD +  VIN   S+G +GFFG   ++L+ L+H E L+ WD   G  +
Sbjct:   172 LICMYDLE-QADDDDAIVHVINAEDSIGNIGFFGSAYQYLYTLSHTERLATWDLTTGLKI 230

Query:   251 ASF-ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIG 309
               +  + RS  SD +  + ++YF+ C Y      L + GG   GT   F V       I 
Sbjct:   231 KHYGADLRSTLSDRYKFE-INYFISCIYDNASNQLILFGGDFNGTGHVFLVTPDEVIQIS 289

Query:   310 PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS----EIN 365
               E V    HT V+R+V           +S  I   T  ED ++  W ++ S     +IN
Sbjct:   290 KLENV----HTDVIRNVF------WDKFKSELI---TSSEDSKIGFWTNNPSITNILKIN 336

Query:   366 RSWISNAMV---MRSPKTHKKNR 385
                 SN M    ++S KT   N+
Sbjct:   337 NDTSSNKMKDDKLKSKKTSPYNK 359

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919588 Wdr89 "WD repeat domain 89" [Mus musculus (taxid:10090)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 96/322 (29%), Positives = 142/322 (44%)

Query:    52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
             L+AV  S   +++Y   T     E  G    ++ +SF+  S   V +S S+DGT++ WD 
Sbjct:    42 LVAVLCSNGSIRIYDKETLHLLREFGGSPGLLSGVSFAN-SCDSV-YSASTDGTVKCWDA 99

Query:   112 RSFHEV-WSVTAGSQEIFCFSFG-GSTDYLLAAGC-----GSQIQFWDWRNKKQ------ 158
             R   E    +  G       SF     D+++ AG       + + FWD R   Q      
Sbjct:   100 RGASEKPVQLFKGYPSCSFISFDVNCKDHVICAGAEKVDEDALLVFWDARFTSQDLSTRD 159

Query:   159 -VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217
              +    E+H +D+TQV F P+N N VVS S DGL+  FD   D  ++D L +  N  +SV
Sbjct:   160 PLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSAD-KEEDALVATCNSVSSV 218

Query:   218 GKVGFFGETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTLDD-VDYFVD 274
               +G+ G+  K ++C+TH E    WD    D     +  N + +   +   D  +DY + 
Sbjct:   219 SCIGWCGKDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVREITDVKDGHLDYLIG 278

Query:   275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG 334
               Y  + + L+VIGGT  G +        G   +      L GGH A VRS     S   
Sbjct:   279 GLYHEKMDRLFVIGGTNTGKIHLLSCTSAGLTHV----TSLHGGHAATVRSFCWNVSEDS 334

Query:   335 RPAQSHGIFGWTGGEDGRLCCW 356
                        TGGED +L  W
Sbjct:   335 L---------LTGGEDAQLLLW 347

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 209 (78.6 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 59/254 (23%), Positives = 122/254 (48%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA ++QS P S +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEASKTQSTPSSSNNQSKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 58/254 (22%), Positives = 120/254 (47%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA  +Q  P S +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 58/254 (22%), Positives = 120/254 (47%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA  +Q  P S +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 58/254 (22%), Positives = 120/254 (47%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA  +Q  P S +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 58/254 (22%), Positives = 120/254 (47%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA  +Q  P S +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 57/254 (22%), Positives = 120/254 (47%)

Query:     2 EMEAEESQSQPKSQSCDNVNS-IK-RFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
             E EA  +Q  P + +  +  + +K  + LK ++  +       +  P  +W  +A S + 
Sbjct:     9 ETEAARAQPAPSAAATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66

Query:    60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct:    67 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124

Query:   120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct:   125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHF-NRD 182

Query:   180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
              + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct:   183 GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238

Query:   240 SIWDWKDGQNVASF 253
              +WD+  G+ + ++
Sbjct:   239 KLWDYSKGKCLKTY 252

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 49/208 (23%), Positives = 101/208 (48%)

Query:    46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
             P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct:    29 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 84

Query:   106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
             ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct:    85 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-A 143

Query:   166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
             H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct:   144 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSP 198

Query:   226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
               K++   T   TL +WD+  G+ + ++
Sbjct:   199 NGKYILAATLDNTLKLWDYSKGKCLKTY 226

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54QU5	WDR89_DICDI	No assigned EC number	0.3231	0.8431	0.9136	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	6e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 54  AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
           A S     +KL+   TG+      GH+  VN ++FS      +  S SSDGTI+ WD  +
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLST 208

Query: 114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQV 173
              + ++      +   +F      L +      I+ WD R  + V  L   H   VT +
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSL 267

Query: 174 HFVPNNQNKVVSASVDGLI 192
            + P+ + ++ S S DG I
Sbjct: 268 AWSPDGK-RLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 39  DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLH 98
            YV  +    D  +++ S     +K++   TG+     +GH+  VN ++FS   T   + 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVA 151

Query: 99  SCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158
           S S DGTI+ WD R+   V ++T  + E+   +F    + LL++     I+ WD    K 
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
           +  L   H   V  V F P+    + S S DG I  +D 
Sbjct: 212 LGTL-RGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 48  NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107
            D  L+A       +K++   TG+     KGH+  V  ++ S   T   L S SSD TIR
Sbjct: 19  PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLASGSSDKTIR 76

Query: 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV 167
            WD  +   V ++T  +  +   +F      L ++     I+ WD    K +  L   H 
Sbjct: 77  LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHT 135

Query: 168 EDVTQVHFVPNNQNKVVSASVDGLI 192
           + V  V F P+    V S+S DG I
Sbjct: 136 DWVNSVAFSPDGT-FVASSSQDGTI 159

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 5/247 (2%)

Query: 21  NSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS 80
           +      L  +++ +          P         S     +KL+   TG+      GH+
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG-SSLDGTIKLWDLRTGKPLSTLAGHT 198

Query: 81  STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLL 140
             V+ ++FS P    ++ S SSDGTIR WD  +   + S  +G  +    SF      L 
Sbjct: 199 DPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 141 AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD 200
           +      I+ WD R+   +      H   V  V F P+    + S S DG +  +D   +
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDL--E 314

Query: 201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLA 260
                   ++      V  + F  + +  +   +   T+ +WD + G+ + + E   ++ 
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 261 SDSWTLD 267
           S S++ D
Sbjct: 375 SVSFSPD 381

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 73  SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF 132
               KGH+  V  ++FS P    +  + S DGTI+ WD  +   + ++   +  +   + 
Sbjct: 2   RRTLKGHTGGVTCVAFS-PDGKLLA-TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 133 GGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
                YL +      I+ WD    + V  L   H   V+ V F P+ +  + S+S D  I
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGR-ILSSSSRDKTI 117

Query: 193 CTFDT 197
             +D 
Sbjct: 118 KVWDV 122

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 38  DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97
              V  +    D   +  S S   +KL+   TG+  G  +GH + VN ++FS     ++L
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234

Query: 98  HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152
            S S DGTIR WD R+   V +++  +  +   ++      L +      I+ WD
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           S +A S    VV+++     Q   E K H   V  I +S  + P +L S S DG+++ W 
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS-ADPTLLASGSDDGSVKLWS 604

Query: 111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-QIQFWDWRNKKQVACLEESHVED 169
                 + ++   +  I C  F   +   LA G    ++ ++D RN K   C    H + 
Sbjct: 605 INQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFD---TGGDINDDDL--------LESVINVGTSVG 218
           V+ V FV  + + +VS+S D  +  +D   +   IN+  L        +++ + +  S G
Sbjct: 664 VSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721

Query: 219 KVGFFGETNK 228
            +    ETN+
Sbjct: 722 YIATGSETNE 731

Length = 793

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 7/185 (3%)

Query: 18  DNVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK 77
           DN ++      K   ++  G       +     S   + L   +      +    S   +
Sbjct: 3   DNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE--IFCFSFGGS 135
           GH  ++  I+FS      +L S SSDGTI+ WD  +  ++     G  +  +   +    
Sbjct: 63  GHEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 136 TDYLLAAGCGS---QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
               +     S    ++ WD     ++    E H E VT + F P+ +     +S+DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 193 CTFDT 197
             +D 
Sbjct: 181 KLWDL 185

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 70  GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           G+     KGH+  V  ++FS P    +  S S DGT+R WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFS-PDGNLLA-SGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           +G+     KGH+  V  ++FS       L S S DGTI+ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFS--PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 7/165 (4%)

Query: 14  SQSCDNVNSIKRFGLKNSIQTNFGDDYVFEI----VPKNDWSLMAVSLSTNVVKLYSPVT 69
           S S D    +        + +     +   +       +   L++       ++L+   T
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Query: 70  GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC 129
           G+     +GHS+ V  +SFS      V+ S S+DGT+R WD  +   + ++   +  +  
Sbjct: 361 GKPLKTLEGHSN-VLSVSFSPDGR--VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417

Query: 130 FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH 174
             F      L +    + I+ WD +   +            ++  
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSS 462

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG1188	376	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG4227	609	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.91
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.9
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG1310	758	consensus WD40 repeat protein [General function pr	99.88
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.68
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.65
KOG4547	541	consensus WD40 repeat-containing protein [General	99.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.51
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.45
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
KOG2314	698	consensus Translation initiation factor 3, subunit	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.41
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.39
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.37
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.36
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.33
COG4946	668	Uncharacterized protein related to the periplasmic	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.27
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.26
KOG2695	425	consensus WD40 repeat protein [General function pr	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.22
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.15
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.12
KOG2695	425	consensus WD40 repeat protein [General function pr	99.11
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.09
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.06
COG4946	668	Uncharacterized protein related to the periplasmic	99.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.0
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.85
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.69
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.62
PRK02888	635	nitrous-oxide reductase; Validated	98.59
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.55
KOG3621	726	consensus WD40 repeat-containing protein [General	98.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.51
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
PRK02888	635	nitrous-oxide reductase; Validated	98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.36
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.27
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.26
COG3391	381	Uncharacterized conserved protein [Function unknow	98.24
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.23
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.1
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.02
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.99
COG3391	381	Uncharacterized conserved protein [Function unknow	97.98
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
KOG2444	238	consensus WD40 repeat protein [General function pr	97.93
KOG2444	238	consensus WD40 repeat protein [General function pr	97.92
KOG2395	644	consensus Protein involved in vacuole import and d	97.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.8
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.73
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.67
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.63
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
KOG2395	644	consensus Protein involved in vacuole import and d	97.61
PRK13616	591	lipoprotein LpqB; Provisional	97.45
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.39
PRK13616	591	lipoprotein LpqB; Provisional	97.37
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.34
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.33
PRK10115	686	protease 2; Provisional	97.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.28
PHA02713	557	hypothetical protein; Provisional	97.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.21
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.17
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.16
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.14
PHA02713	557	hypothetical protein; Provisional	97.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.02
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.93
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.47
PHA03098	534	kelch-like protein; Provisional	96.39
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.36
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.32
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.16
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.11
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.09
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.98
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.92
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.91
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.89
PHA02790	480	Kelch-like protein; Provisional	95.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.81
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.71
KOG2247	615	consensus WD40 repeat-containing protein [General	95.71
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.64
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.64
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.61
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.52
COG5167	776	VID27 Protein involved in vacuole import and degra	95.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.37
PHA03098	534	kelch-like protein; Provisional	95.34
KOG2247	615	consensus WD40 repeat-containing protein [General	95.28
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.24
PRK13684	334	Ycf48-like protein; Provisional	95.09
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.99
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.95
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.63
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.61
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.43
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.38
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.13
PRK10115	686	protease 2; Provisional	94.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.91
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.87
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.67
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.65
PHA02790	480	Kelch-like protein; Provisional	93.28
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.1
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.03
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.95
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.83
COG5167	776	VID27 Protein involved in vacuole import and degra	92.76
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.34
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.2
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.09
COG5276	370	Uncharacterized conserved protein [Function unknow	91.43
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.42
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.3
PRK13684	334	Ycf48-like protein; Provisional	91.09
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.86
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.39
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.15
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.95
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.71
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.55
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.47
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.34
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.06
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.33
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.06
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.89
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.86
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.76
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	86.31
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	85.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.18
COG4590	733	ABC-type uncharacterized transport system, permeas	85.15
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.72
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.63
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.44
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.36
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.11
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.01
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.84
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	83.79
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.89
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.75
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	82.35
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	81.88
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.3
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	81.15
COG4590	733	ABC-type uncharacterized transport system, permeas	80.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	80.42

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-56  Score=356.42  Aligned_cols=310  Identities=19%  Similarity=0.312  Sum_probs=281.3

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-eeecCCCCcEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-GECKGHSSTVNQIS   87 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~   87 (389)
                      ...++++.|.++|+||+.  .+..+.++ ...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.+|...|++++
T Consensus       128 ~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~La  207 (480)
T KOG0271|consen  128 SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALA  207 (480)
T ss_pred             ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEe
Confidence            367899999999999986  57777888 999999999999999999999999999999998654 67899999999999


Q ss_pred             EeCCC---CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           88 FSGPS---TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        88 ~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      |.|-.   ...+|++++.||.|+|||+..+.++..+.+|..+|+|+.|- ..+.+++++.|++|++|+...|.....++ 
T Consensus       208 wep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lk-  285 (480)
T KOG0271|consen  208 WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELK-  285 (480)
T ss_pred             ecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhc-
Confidence            98732   11589999999999999999999999999999999999997 56788888889999999999999999999 


Q ss_pred             cccCCeeEEEEe-----------cCCC------------------------CeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457          165 SHVEDVTQVHFV-----------PNNQ------------------------NKVVSASVDGLICTFDTGGDINDDDLLES  209 (389)
Q Consensus       165 ~~~~~v~~~~~~-----------~~~~------------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  209 (389)
                      +|...|+.|+.+           |.+.                        ..+++|+.|.++.+|+..   ...+++..
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~r  362 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITR  362 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhh
Confidence            999999999877           2222                        259999999999999987   34567888


Q ss_pred             eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          210 VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      +.+|+.-|+.+.|+ |++.++++++.|++|++||.++|+.+.+|.+            |...|..++|+.|.+  +|++|
T Consensus       363 mtgHq~lVn~V~fS-Pd~r~IASaSFDkSVkLW~g~tGk~lasfRG------------Hv~~VYqvawsaDsR--LlVS~  427 (480)
T KOG0271|consen  363 MTGHQALVNHVSFS-PDGRYIASASFDKSVKLWDGRTGKFLASFRG------------HVAAVYQVAWSADSR--LLVSG  427 (480)
T ss_pred             hhchhhheeeEEEC-CCccEEEEeecccceeeeeCCCcchhhhhhh------------ccceeEEEEeccCcc--EEEEc
Confidence            99999999999999 8999999999999999999999999999998            779999999999998  89999


Q ss_pred             cCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457          290 TGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       290 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~  357 (389)
                      +.|.++++|++.+.++      ...++ ||.++|.++         .|+|||+.+++|+.|..+++|.
T Consensus       428 SkDsTLKvw~V~tkKl------~~DLp-Gh~DEVf~v---------DwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTKKL------KQDLP-GHADEVFAV---------DWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceEEEEEeeeeee------cccCC-CCCceEEEE---------EecCCCceeecCCCceEEEeec
Confidence            9999999999999887      55665 999999999         9999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-53  Score=335.80  Aligned_cols=292  Identities=18%  Similarity=0.238  Sum_probs=262.4

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      +...+.| .++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+||+  +.||+|+.||+|++|
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg--k~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG--KKIASGSKDGSIRLW  184 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc--chhhccccCCeEEEe
Confidence            4445667 8999999999999999999999999999999999999999999999999999999  799999999999999


Q ss_pred             EccCCeEE-EEEEcCCCCeEEEEEeC-----CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          110 DTRSFHEV-WSVTAGSQEIFCFSFGG-----STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       110 d~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      |..+++++ ..+.+|...|++++|.|     ...++++++.||.|+|||+..+.++..+. +|..+|+|+.|-.+|  +|
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g--li  261 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG--LI  261 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc--eE
Confidence            99988765 67999999999999976     45678888889999999999999999999 999999999998775  99


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec-----------------------------------CCCc
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG-----------------------------------ETNK  228 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------------------------~~~~  228 (389)
                      ++|+.|++|++|+...+    ...+.+.+|...|+.++.+.                                   ..++
T Consensus       262 ySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             EecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            99999999999999844    57788889999999888761                                   1234


Q ss_pred             EEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457          229 HLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT  307 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~  307 (389)
                      .|++|+.|.++.+|+.... +++....+            |..-|+.+.|+||+.  ||++++.|..|++|+..+++.  
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtg------------Hq~lVn~V~fSPd~r--~IASaSFDkSVkLW~g~tGk~--  401 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTG------------HQALVNHVSFSPDGR--YIASASFDKSVKLWDGRTGKF--  401 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhc------------hhhheeeEEECCCcc--EEEEeecccceeeeeCCCcch--
Confidence            6999999999999997544 46666665            779999999999999  999999999999999999987  


Q ss_pred             cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                          +..+. ||-.+|..+         +||.|.++|+||+.|.++++|++...
T Consensus       402 ----lasfR-GHv~~VYqv---------awsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  402 ----LASFR-GHVAAVYQV---------AWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             ----hhhhh-hccceeEEE---------EeccCccEEEEcCCCceEEEEEeeee
Confidence                77775 999999999         99999999999999999999999865

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-52  Score=338.54  Aligned_cols=284  Identities=18%  Similarity=0.219  Sum_probs=266.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ..+|..+.|+.|++.|++|+.+|.+++|+..+...+.++.+|...|.++.|+|..+...++||+.||++++|++.+..++
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l  254 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL  254 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence            78899999999999999999999999999999999999999999999999999843369999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      ..+.+|...|..++|+|+|.+|.+++.|.+-++||++++..+.... +|...|.+++|+|+|. ++++|+.|..-+|||+
T Consensus       255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDL  332 (459)
T ss_pred             hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccchhheeec
Confidence            9999999999999999999999999999999999999998888777 9999999999999996 9999999999999999


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY  277 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (389)
                      |++    ..+..+.+|..+|.+|+|+ |+|..|++|+.|++++|||++..+.+.++..            |..-|+.++|
T Consensus       333 Rtg----r~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA------------H~nlVS~Vk~  395 (459)
T KOG0272|consen  333 RTG----RCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPA------------HSNLVSQVKY  395 (459)
T ss_pred             ccC----cEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceeccc------------ccchhhheEe
Confidence            976    5678888999999999999 8899999999999999999999999888887            7799999999


Q ss_pred             cCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457          278 PGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~  357 (389)
                      +|+... +|++++.|++++||.-.+.+.      +..+. ||++.|.++         .+++|+++++|++.|.++++|.
T Consensus       396 ~p~~g~-fL~TasyD~t~kiWs~~~~~~------~ksLa-GHe~kV~s~---------Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 SPQEGY-FLVTASYDNTVKIWSTRTWSP------LKSLA-GHEGKVISL---------DISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCCe-EEEEcccCcceeeecCCCccc------chhhc-CCccceEEE---------EeccCCceEEEeccCceeeecc
Confidence            994332 899999999999999998766      77776 999999999         9999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-47  Score=295.76  Aligned_cols=289  Identities=16%  Similarity=0.213  Sum_probs=265.9

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      .++++| ...|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.+  +++|+|+.|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEEe
Confidence            377888 8999999999999999999999999999999988888888888999999999999  7999999999999999


Q ss_pred             ccCC------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          111 TRSF------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       111 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      +.+.      ...+.+.+|.+.+.|+.|. ++.+|++++.|.++.+||+++++.+..+. +|.+.|.++.+.|...+.++
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEE
Confidence            9865      4556789999999999998 58899999999999999999999999999 99999999999995447999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      +|+-|+..++||+|.+    .....+.+|++.|+++.|+ |+|.-+++|+.|++.++||++..+.+..|....       
T Consensus       204 Sg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-------  271 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDS-------  271 (343)
T ss_pred             ecccccceeeeeccCc----ceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCc-------
Confidence            9999999999999944    7889999999999999999 788999999999999999999999998888544       


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                         ...+|++++|+..|+  +|++|..|.++.+||.-.++.      +..+. ||+..|.++         ..+|||.-+
T Consensus       272 ---~~~gitSv~FS~SGR--lLfagy~d~~c~vWDtlk~e~------vg~L~-GHeNRvScl---------~~s~DG~av  330 (343)
T KOG0286|consen  272 ---IICGITSVAFSKSGR--LLFAGYDDFTCNVWDTLKGER------VGVLA-GHENRVSCL---------GVSPDGMAV  330 (343)
T ss_pred             ---ccCCceeEEEccccc--EEEeeecCCceeEeeccccce------EEEee-ccCCeeEEE---------EECCCCcEE
Confidence               447899999999999  899999999999999988776      56666 999999999         999999999


Q ss_pred             EEecCCCeEEEEe
Q 016457          345 WTGGEDGRLCCWL  357 (389)
Q Consensus       345 ~s~~~dg~v~iW~  357 (389)
                      +||+.|..||||.
T Consensus       331 ~TgSWDs~lriW~  343 (343)
T KOG0286|consen  331 ATGSWDSTLRIWA  343 (343)
T ss_pred             EecchhHheeecC
Confidence            9999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-48  Score=313.59  Aligned_cols=268  Identities=18%  Similarity=0.229  Sum_probs=252.0

Q ss_pred             CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCC--CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKND--WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      +....+|++-+|.+++|+..  +.+.++.+ .+.|.++.|+|.  +..+|+|+.||++++|++++..++..+.+|...|.
T Consensus       186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs  265 (459)
T KOG0272|consen  186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS  265 (459)
T ss_pred             CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence            34467899999999999987  46778888 999999999997  56899999999999999998899999999999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      .++|+|+|  ++|+|++.|.+-++||++++..+...++|...|.+++|+|+|..+++||.|..-+|||+|++.++..+. 
T Consensus       266 ~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-  342 (459)
T KOG0272|consen  266 RVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-  342 (459)
T ss_pred             eeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-
Confidence            99999999  899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      +|..+|.+|+|+|+| +.|+||+.|++++|||++..    ..+..+.+|..-|..|.|.|..|.+|++++.|++++||..
T Consensus       343 gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             ccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            899999999999999 59999999999999999943    4588888999999999999778999999999999999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      .+..+++++.+            |++.|.++.++++++  ++++++.|.++++|.
T Consensus       418 ~~~~~~ksLaG------------He~kV~s~Dis~d~~--~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  418 RTWSPLKSLAG------------HEGKVISLDISPDSQ--AIATSSFDRTIKLWR  458 (459)
T ss_pred             CCcccchhhcC------------CccceEEEEeccCCc--eEEEeccCceeeecc
Confidence            99999999998            889999999999999  999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6e-45  Score=274.97  Aligned_cols=288  Identities=16%  Similarity=0.207  Sum_probs=253.5

Q ss_pred             CCccccCCCCeEEEEec--Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEE
Q 016457           12 PKSQSCDNVNSIKRFGL--KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQI   86 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i   86 (389)
                      ...++++.|.+||+|..  +.+.+++++ ++.|+.+...|+++.||+++ .-.|++||+.+++  ++.++.+|++.|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            37889999999999997  468999999 99999999999999999998 5679999998874  688999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      .|..++  +.+++|++||+++|||++...+.+.++. .++|+++..+|+...|+++..+|.|++||+++......+....
T Consensus        90 gF~~dg--rWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   90 GFQCDG--RWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             EEeecC--eEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            999999  7999999999999999999777766664 6999999999999999999999999999999887776666455


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC--CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI--NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      ..+|.++...|+|. +++.+...|.+++|++-+..  .+..++.++..|...+..+.++ |++++|++++.|.+++||+.
T Consensus       167 ~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEec
Confidence            67899999999996 99999999999999998643  2355677788999999999999 88999999999999999999


Q ss_pred             CCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceee
Q 016457          245 KDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVV  323 (389)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  323 (389)
                      .+. +....+.+            |...+++++||.||+  ||++|+.|+.+++|++..++.      +.... +|-...
T Consensus       245 ~~~~kle~~l~g------------h~rWvWdc~FS~dg~--YlvTassd~~~rlW~~~~~k~------v~qy~-gh~K~~  303 (311)
T KOG0315|consen  245 DDFFKLELVLTG------------HQRWVWDCAFSADGE--YLVTASSDHTARLWDLSAGKE------VRQYQ-GHHKAA  303 (311)
T ss_pred             CCceeeEEEeec------------CCceEEeeeeccCcc--EEEecCCCCceeecccccCce------eeecC-Cccccc
Confidence            987 55556665            668999999999999  999999999999999999886      45554 777665


Q ss_pred             eec
Q 016457          324 RSV  326 (389)
Q Consensus       324 ~~~  326 (389)
                      .++
T Consensus       304 vc~  306 (311)
T KOG0315|consen  304 VCV  306 (311)
T ss_pred             EEE
Confidence            555

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-44  Score=276.24  Aligned_cols=296  Identities=19%  Similarity=0.246  Sum_probs=246.4

Q ss_pred             eeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCC-----CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           33 QTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPV-----TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .++.+ ++.|..++..+.+ ..+++++.|.++.+|++.     .|.+++.+.||...|..+..++++  ++.++++.|++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence            45666 8999999998874 688999999999999874     467889999999999999999999  79999999999


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC--CCCeE
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN--NQNKV  183 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l  183 (389)
                      +++||+.+++..+.|.+|...|.+++|++++.++++++.|.+|++|++............+...|+|+.|+|+  .+ .|
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p-~I  165 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP-II  165 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc-EE
Confidence            9999999999999999999999999999999999999999999999987554443333234789999999999  55 99


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++++.|++|++||+++    .+....+.+|...++.++++ |+|.++++|+.||.+.+||++.++.+..+.         
T Consensus       166 vs~s~DktvKvWnl~~----~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~---------  231 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRN----CQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------  231 (315)
T ss_pred             EEccCCceEEEEccCC----cchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc---------
Confidence            9999999999999994    35566778899999999999 899999999999999999999999988876         


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec-cCCCcccCCCCCCCce
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQSHGI  342 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~~~~  342 (389)
                          |...|.+++|+|+.-  +|+.+ .+..|+|||++++..      +..+...-.++  +. ......+.++|++||+
T Consensus       232 ----a~~~v~sl~fspnry--wL~~a-t~~sIkIwdl~~~~~------v~~l~~d~~g~--s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  232 ----AFDIVNSLCFSPNRY--WLCAA-TATSIKIWDLESKAV------VEELKLDGIGP--SSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             ----CCCeEeeEEecCCce--eEeec-cCCceEEEeccchhh------hhhcccccccc--ccccCCcEEEEEEEcCCCc
Confidence                668999999999754  55555 455699999999876      33332111111  11 1122223449999999


Q ss_pred             eEEEecCCCeEEEEeccC
Q 016457          343 FGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~~  360 (389)
                      .|++|-.|+.|++|.+..
T Consensus       297 tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEeeecCCcEEEEEeec
Confidence            999999999999998753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.4e-44  Score=270.27  Aligned_cols=272  Identities=17%  Similarity=0.262  Sum_probs=236.6

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEcCCCCeE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTAGSQEIF  128 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~  128 (389)
                      -+|++++.|.+|++|...+|.+..+++...+.|+.+...|++  ..|++++.- .||+||++++.  ++.+|.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk--~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK--KDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc--chhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence            489999999999999999999999999778899999999999  688887754 69999999764  6899999999999


Q ss_pred             EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce
Q 016457          129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (389)
                      ++.|..++..+++++.||+++|||+|...+.+.+.  |..+|+++..+|+.. .|++|..+|.|++||+....    ...
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~----c~~  160 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENS----CTH  160 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCc----ccc
Confidence            99999999999999999999999999977777775  889999999999985 99999999999999999542    222


Q ss_pred             ee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce------eEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          209 SV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN------VASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       209 ~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      .+ .....+|.++... +++.+++.+...|..++|++-+...      +..|+.            |...+..+.+||++
T Consensus       161 ~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a------------h~~~il~C~lSPd~  227 (311)
T KOG0315|consen  161 ELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA------------HNGHILRCLLSPDV  227 (311)
T ss_pred             ccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheec------------ccceEEEEEECCCC
Confidence            22 2344688999998 8899999999999999999876533      333443            78999999999999


Q ss_pred             CeEEEEEecCCceEEEEEeccC-CccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYG-GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      +  ||++++.|.+++||+.++. +.      ...+. +|...+.+.         +||.||+||+||+.|+.+++|++..
T Consensus       228 k--~lat~ssdktv~iwn~~~~~kl------e~~l~-gh~rWvWdc---------~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  228 K--YLATCSSDKTVKIWNTDDFFKL------ELVLT-GHQRWVWDC---------AFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             c--EEEeecCCceEEEEecCCceee------EEEee-cCCceEEee---------eeccCccEEEecCCCCceeeccccc
Confidence            9  9999999999999999987 32      34454 999999999         9999999999999999999999987


Q ss_pred             Ccc
Q 016457          361 SSE  363 (389)
Q Consensus       361 ~~~  363 (389)
                      ..+
T Consensus       290 ~k~  292 (311)
T KOG0315|consen  290 GKE  292 (311)
T ss_pred             Cce
Confidence            753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-43  Score=274.41  Aligned_cols=292  Identities=18%  Similarity=0.225  Sum_probs=257.1

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC-CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV-TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      .++..+.+ .+.|+.+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+++  ..|++++.|.+|+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--SHILSCGTDKTVR  115 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--CEEEEecCCceEE
Confidence            35556667 9999999999999999999999999999964 345667888999999999999999  7999999999999


Q ss_pred             EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      .||+++|+.++.+++|..-|+++.-+.-+..|+++++ |+++++||+|+...++++.  .+.+++++.|...+. .+.+|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~sg  192 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVISG  192 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-ceeec
Confidence            9999999999999999999999997766777777666 8999999999999999886  677899999999995 99999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----ceeEEeecccccccC
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----QNVASFENARSLASD  262 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~  262 (389)
                      +-|+.|++||++.    ......+.+|..+|+.+..+ +++.++++-+.|.++++||++..    +++..+.++...   
T Consensus       193 gIdn~ikvWd~r~----~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---  264 (338)
T KOG0265|consen  193 GIDNDIKVWDLRK----NDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---  264 (338)
T ss_pred             cccCceeeecccc----CcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhh---
Confidence            9999999999984    35678888999999999999 78899999999999999999753    457777764311   


Q ss_pred             CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                           .+.....++|+|++.  ++.+|+.|..+++||......      +..++ ||.+.|.++         .|+|...
T Consensus       265 -----feknlL~cswsp~~~--~i~ags~dr~vyvwd~~~r~~------lyklp-Gh~gsvn~~---------~Fhp~e~  321 (338)
T KOG0265|consen  265 -----FEKNLLKCSWSPNGT--KITAGSADRFVYVWDTTSRRI------LYKLP-GHYGSVNEV---------DFHPTEP  321 (338)
T ss_pred             -----hhhhcceeeccCCCC--ccccccccceEEEeecccccE------EEEcC-CcceeEEEe---------eecCCCc
Confidence                 235677899999999  889999999999999998776      67776 999999999         9999999


Q ss_pred             eEEEecCCCeEEEEe
Q 016457          343 FGWTGGEDGRLCCWL  357 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~  357 (389)
                      +|.+++.|.+|++=.
T Consensus       322 iils~~sdk~i~lge  336 (338)
T KOG0265|consen  322 IILSCSSDKTIYLGE  336 (338)
T ss_pred             EEEEeccCceeEeec
Confidence            999999999998743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.9e-45  Score=294.93  Aligned_cols=286  Identities=17%  Similarity=0.243  Sum_probs=258.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .-.|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+|.++.|++++  ..++||+.+|.|++|+.. ...+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g--~wmiSgD~gG~iKyWqpn-mnnV  172 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG--TWMISGDKGGMIKYWQPN-MNNV  172 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC--CEEEEcCCCceEEecccc-hhhh
Confidence            6789999999999999999999999999986666666778999999999999999  799999999999999976 4455


Q ss_pred             EEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          118 WSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       118 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      +.++.| ...|++++|+|++..+++++.||+|+|||....+.-..+. +|.-.|.+++|+|... ++++|+.|..|++||
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg-LiasgskDnlVKlWD  250 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG-LIASGSKDNLVKLWD  250 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-eeEEccCCceeEeec
Confidence            556666 4899999999999999999999999999999988888888 9999999999999986 999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      .+++    .++..+..|...|..+.|. +++++|++++.|..+++||+++.+.+..+.+            |...++++.
T Consensus       251 prSg----~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~------------Hkkdv~~~~  313 (464)
T KOG0284|consen  251 PRSG----SCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRG------------HKKDVTSLT  313 (464)
T ss_pred             CCCc----chhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhc------------chhhheeec
Confidence            9966    6788889999999999999 6779999999999999999998888888887            669999999


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      |+|-... ++.+|+.||.|..|.+...+      ++..++.+|...|.++         +|+|-|.+|++|+.|.++++|
T Consensus       314 WhP~~~~-lftsgg~Dgsvvh~~v~~~~------p~~~i~~AHd~~iwsl---------~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  314 WHPLNES-LFTSGGSDGSVVHWVVGLEE------PLGEIPPAHDGEIWSL---------AYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             ccccccc-ceeeccCCCceEEEeccccc------cccCCCcccccceeee---------eccccceeEeecCCCcceeee
Confidence            9998765 57899999999999998433      3677778999999999         999999999999999999999


Q ss_pred             eccCC
Q 016457          357 LSDDS  361 (389)
Q Consensus       357 ~~~~~  361 (389)
                      .-.-+
T Consensus       378 ~r~rp  382 (464)
T KOG0284|consen  378 TRNRP  382 (464)
T ss_pred             ccCCC
Confidence            87755

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.8e-43  Score=286.60  Aligned_cols=306  Identities=14%  Similarity=0.180  Sum_probs=270.1

Q ss_pred             CccccCCCCeEEEEecCc------eeeeee-----------cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee
Q 016457           13 KSQSCDNVNSIKRFGLKN------SIQTNF-----------GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE   75 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~------~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~   75 (389)
                      ..|+++.+...++|++..      ....++           .+..|++++|+.+|.+||+|+.||.++||+.. |..+.+
T Consensus       193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t  271 (524)
T KOG0273|consen  193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST  271 (524)
T ss_pred             hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence            567788888999999853      111111           15679999999999999999999999999964 888899


Q ss_pred             ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457           76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus        76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  155 (389)
                      +..|.++|.++.|+..+  ++|++++.|+++.+||..++.....+..|..+-..+.|- ++..+++++.|+.|+++.+..
T Consensus       272 l~~HkgPI~slKWnk~G--~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~  348 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKG--TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE  348 (524)
T ss_pred             hhccCCceEEEEEcCCC--CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecC
Confidence            99999999999999998  899999999999999999999999999998887889998 778899999999999999999


Q ss_pred             CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC--------CC
Q 016457          156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE--------TN  227 (389)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~  227 (389)
                      ..++.++. +|.++|.+|.|+|.+. +|++++.|++++||...    .......+..|...|..+.|+|.        .+
T Consensus       349 ~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~  422 (524)
T KOG0273|consen  349 DRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN  422 (524)
T ss_pred             CCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence            99999999 8999999999999995 99999999999999987    33567778889989999998853        35


Q ss_pred             cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457          228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT  307 (389)
Q Consensus       228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~  307 (389)
                      ..+++++.|++|++||+..+.+++.|..            |..+|.+++|+|+|.  |+++|+.||.|.+|+..+++.  
T Consensus       423 ~~l~sas~dstV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~g~--ylAsGs~dg~V~iws~~~~~l--  486 (524)
T KOG0273|consen  423 LMLASASFDSTVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPNGR--YLASGSLDGCVHIWSTKTGKL--  486 (524)
T ss_pred             ceEEEeecCCeEEEEEccCCceeEeecc------------CCCceEEEEecCCCc--EEEecCCCCeeEeccccchhe--
Confidence            6899999999999999999999999987            779999999999999  999999999999999999886  


Q ss_pred             cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                          .+..  ...+.|..+         +|+.+|.+|..+-.||.+++-++.
T Consensus       487 ----~~s~--~~~~~Ifel---------~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  487 ----VKSY--QGTGGIFEL---------CWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ----eEee--cCCCeEEEE---------EEcCCCCEEEEEecCCCceEEEec
Confidence                3443  345668888         999999999999899999998763

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.7e-44  Score=282.02  Aligned_cols=300  Identities=17%  Similarity=0.279  Sum_probs=260.6

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ..+.+.+ .+.|.|+++.|.+..|++|+.|++|+|||+.+|++..++.||-..|..+++++..  .|+++++.|+.|+-|
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH--pYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQVKCW  220 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC--ceEEEecCCCeeEEE
Confidence            4556667 8999999999999999999999999999999999999999999999999999887  799999999999999


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      |+...+.++.+.+|-+.|.|++.+|.-..|++++.|.++++||+|+...+..+. +|..+|.++.+.|.++ .+++|+.|
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvit~S~D  298 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVITGSHD  298 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceEEecCC
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999997 99999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      ++|++||++.+    +....+..|...+.+++.+ |....+++++.| .|+-|++..+..+..+.+            |.
T Consensus       299 ~tvrlWDl~ag----kt~~tlt~hkksvral~lh-P~e~~fASas~d-nik~w~~p~g~f~~nlsg------------h~  360 (460)
T KOG0285|consen  299 STVRLWDLRAG----KTMITLTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLPEGEFLQNLSG------------HN  360 (460)
T ss_pred             ceEEEeeeccC----ceeEeeecccceeeEEecC-CchhhhhccCCc-cceeccCCccchhhcccc------------cc
Confidence            99999999955    5577788899999999999 555667777666 689999999998888877            66


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                      ..+..++...|+   ++++|+.+|.|.+||.+++...+..   +.+. +    .-++....++++.+|+..|..|+||..
T Consensus       361 ~iintl~~nsD~---v~~~G~dng~~~fwdwksg~nyQ~~---~t~v-q----pGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  361 AIINTLSVNSDG---VLVSGGDNGSIMFWDWKSGHNYQRG---QTIV-Q----PGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             ceeeeeeeccCc---eEEEcCCceEEEEEecCcCcccccc---cccc-c----CCccccccceeEEeecccCceEEeccC
Confidence            889999999887   7899999999999999988652111   1111 0    011112223344489999999999999


Q ss_pred             CCeEEEEeccCCcc
Q 016457          350 DGRLCCWLSDDSSE  363 (389)
Q Consensus       350 dg~v~iW~~~~~~~  363 (389)
                      |.+|++|+-++...
T Consensus       430 dKtIk~~keDe~aT  443 (460)
T KOG0285|consen  430 DKTIKMYKEDEHAT  443 (460)
T ss_pred             CcceEEEecccccC
Confidence            99999999887733

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-44  Score=283.08  Aligned_cols=291  Identities=19%  Similarity=0.269  Sum_probs=266.7

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ...+.+.+ ..+|+.+-|+|+-..+++++.|++|++||..+|++...++||++.|.+|+|+..|  .+|++++.|-.+++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G--k~l~tcSsDl~~~L  176 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG--KYLATCSSDLSAKL  176 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc--cEEEecCCccchhh
Confidence            34445555 8899999999999999999999999999999999999999999999999999888  89999999999999


Q ss_pred             EEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          109 WDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       109 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      ||..+ .++++.+.+|...|.+++|-|.+.++++++.|.+|+.|++.++-++.++. +|...|..++.+.+|. ++++++
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGt-i~As~s  254 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGT-IIASCS  254 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCee-EEEecC
Confidence            99986 67788889999999999999999999999999999999999999999999 9999999999999995 999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC--------------CCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE--------------TNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      .|.+|++|-+.++    .+...+..|+.+|.+++|.|.              .++++.+++.|++|++||+.++.++.++
T Consensus       255 ~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL  330 (406)
T KOG0295|consen  255 NDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL  330 (406)
T ss_pred             CCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence            9999999999854    455667778889999988642              2369999999999999999999999999


Q ss_pred             ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCccc
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQ  333 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  333 (389)
                      .+            |...|.+++|+|.|+  ||+++..|+++++||+.++++      ...++ .|...|+++       
T Consensus       331 ~g------------hdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~~c------mk~~~-ah~hfvt~l-------  382 (406)
T KOG0295|consen  331 VG------------HDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNLQC------MKTLE-AHEHFVTSL-------  382 (406)
T ss_pred             ec------------ccceeeeeEEcCCCe--EEEEEecCCcEEEEEecccee------eeccC-CCcceeEEE-------
Confidence            98            779999999999999  999999999999999999887      67776 999999999       


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEec
Q 016457          334 GRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       334 ~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                        .|..+..|++||+-|.++++|..
T Consensus       383 --Dfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  383 --DFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --ecCCCCceEEeccccceeeeeec
Confidence              89988899999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-42  Score=266.32  Aligned_cols=265  Identities=18%  Similarity=0.249  Sum_probs=235.8

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc------eeeeeecCCCCcE
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG------QYSGECKGHSSTV   83 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~------~~~~~~~~~~~~v   83 (389)
                      ..-+++.||.+.+||.-  +..+.+.- ...|..++|+|.|+++|+|+-|+...||++.+.      +....+.+|++-+
T Consensus        69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl  148 (343)
T KOG0286|consen   69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYL  148 (343)
T ss_pred             eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcccee
Confidence            45678999999999974  34444544 789999999999999999999999999999854      4456789999999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      .|+.|.+++   .|+|++.|.+..+||+++++.+..|.+|.+.|.+++++| +.+.+++++.|+..++||+|.+..+++|
T Consensus       149 ScC~f~dD~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  149 SCCRFLDDN---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             EEEEEcCCC---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            999999866   899999999999999999999999999999999999999 7888999999999999999999999999


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      . +|...|+++.|.|+|. -|++|+.|+++++||+|...  ...+..-.....+|++++|+ ..|++|++|..|..+.+|
T Consensus       226 ~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vW  300 (343)
T KOG0286|consen  226 E-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVW  300 (343)
T ss_pred             c-ccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEe
Confidence            9 9999999999999995 99999999999999999542  11122222344689999999 889999999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      |.-.++.+..+.+            |+..|.++..+|||-  .+++|+.|..++||.
T Consensus       301 Dtlk~e~vg~L~G------------HeNRvScl~~s~DG~--av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  301 DTLKGERVGVLAG------------HENRVSCLGVSPDGM--AVATGSWDSTLRIWA  343 (343)
T ss_pred             eccccceEEEeec------------cCCeeEEEEECCCCc--EEEecchhHheeecC
Confidence            9999999988887            779999999999998  889999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-41  Score=256.84  Aligned_cols=293  Identities=21%  Similarity=0.314  Sum_probs=245.8

Q ss_pred             eeeeec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCc---eeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           32 IQTNFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTG---QYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~---~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      ++.+.+ .+.|..++|+|- |..||+++.|+.|+||+...+   .+...+ .+|+..|.+++|+|.+  ++|++|+.|.+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--~~La~aSFD~t   84 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--RYLASASFDAT   84 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--cEEEEeeccce
Confidence            455666 788999999998 889999999999999998743   333333 4699999999999999  79999999999


Q ss_pred             EEEEEccC--CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC---ceeeeeeecccCCeeEEEEecCCC
Q 016457          106 IRAWDTRS--FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK---KQVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       106 i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      +.||.-..  .+++.++++|...|.|++|+++|++|++++.|+.|-||.+...   ++...++ +|...|..+.|+|...
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED  163 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc
Confidence            99998654  4788999999999999999999999999999999999998744   4567777 8999999999999986


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccc
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLA  260 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  260 (389)
                       +|++++.|++|++|+-.. .....+...+.+|...|.+++|. +.|..|++++.|++++||-..+     .+..     
T Consensus       164 -lL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~-----~~~~-----  230 (312)
T KOG0645|consen  164 -LLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYT-----DLSG-----  230 (312)
T ss_pred             -eeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeecc-----Ccch-----
Confidence             999999999999998874 33567788889999999999999 7788999999999999998652     1221     


Q ss_pred             cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                            .|...+..+.|. ++   .|++++.|+.|++|.............+......|...|+++         .|+|.
T Consensus       231 ------~~sr~~Y~v~W~-~~---~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV---------~w~p~  291 (312)
T KOG0645|consen  231 ------MHSRALYDVPWD-NG---VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV---------QWNPK  291 (312)
T ss_pred             ------hcccceEeeeec-cc---ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE---------EEcCC
Confidence                  166889999998 44   789999999999998775432222233444556899999999         88884


Q ss_pred             -ceeEEEecCCCeEEEEecc
Q 016457          341 -GIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       341 -~~~l~s~~~dg~v~iW~~~  359 (389)
                       ..+|++||+||.|++|.+.
T Consensus       292 ~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCceeecCCCceEEEEEec
Confidence             6789999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-41  Score=256.67  Aligned_cols=272  Identities=17%  Similarity=0.269  Sum_probs=230.4

Q ss_pred             CccccCCCCeEEEEecC-------ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           13 KSQSCDNVNSIKRFGLK-------NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~-------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      ..-+++.|.++.+|++.       .+++.+.| ...|..++.++||++.++++.|+++++||+.+|+..+.|.+|...|.
T Consensus        30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl  109 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL  109 (315)
T ss_pred             eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE
Confidence            45578899999999974       46788888 88999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC--CCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCceee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--SQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  160 (389)
                      +++|++++  ..+++|+.|.+|++||+.. .+..++..+  .+-|+|+.|+|+  +..+++++.|++|++||+++.+...
T Consensus       110 sva~s~dn--~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  110 SVAFSTDN--RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             EEEecCCC--ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence            99999999  7999999999999999864 455555544  688999999998  6788889999999999999999999


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      .+. +|.+.++.++++|+|. ++++|+.||.+.+||++.++    . .....+...|.+++|+ |+. +.++...+..|+
T Consensus       187 ~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k----~-lysl~a~~~v~sl~fs-pnr-ywL~~at~~sIk  257 (315)
T KOG0279|consen  187 TFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK----N-LYSLEAFDIVNSLCFS-PNR-YWLCAATATSIK  257 (315)
T ss_pred             ccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc----e-eEeccCCCeEeeEEec-CCc-eeEeeccCCceE
Confidence            998 9999999999999995 99999999999999999543    3 4556688899999999 543 555555666799


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      |||+.++.++..+.....-.+   .........+++|+++|+  .|++|-.|+.|++|.+.
T Consensus       258 Iwdl~~~~~v~~l~~d~~g~s---~~~~~~~clslaws~dG~--tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  258 IWDLESKAVVEELKLDGIGPS---SKAGDPICLSLAWSADGQ--TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeccchhhhhhccccccccc---cccCCcEEEEEEEcCCCc--EEEeeecCCcEEEEEee
Confidence            999999988877653211100   001235678899999999  78999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-41  Score=252.43  Aligned_cols=286  Identities=18%  Similarity=0.279  Sum_probs=248.7

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ...+.+ .++|+++.|+-||++.++++.|.+|++|++..|.+++++.+|...|..++.+.++  ..+++|+.|..+.+||
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn--skf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN--SKFASCGGDKAVQVWD   87 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc--cccccCCCCceEEEEE
Confidence            445566 8999999999999999999999999999999999999999999999999999888  6999999999999999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      +.+|+.++.+.+|...|+.+.|+.....+++++.|.++++||.++.  ++++.+. .....|.++....   ..|++|+.
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~---heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE---HEIVAGSV  163 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEecc---cEEEeecc
Confidence            9999999999999999999999977778888888999999999864  6788887 6778899999876   48999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD  268 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  268 (389)
                      ||+++.||++.+.      ........+|+++.|+ ++++..++++.|+++++.|-.+|+.++.+.+++          .
T Consensus       164 DGtvRtydiR~G~------l~sDy~g~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk----------n  226 (307)
T KOG0316|consen  164 DGTVRTYDIRKGT------LSSDYFGHPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK----------N  226 (307)
T ss_pred             CCcEEEEEeecce------eehhhcCCcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcccc----------c
Confidence            9999999999552      2223356799999999 889999999999999999999999999999976          4


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee-eeeccCCCcccCCCCCCCceeEEEe
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV-VRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ..+-.+++++....  .+++|++||.|++||+....+      +..+. .|... |.++         ++.|.-.-++++
T Consensus       227 ~eykldc~l~qsdt--hV~sgSEDG~Vy~wdLvd~~~------~sk~~-~~~~v~v~dl---------~~hp~~~~f~~A  288 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDT--HVFSGSEDGKVYFWDLVDETQ------ISKLS-VVSTVIVTDL---------SCHPTMDDFITA  288 (307)
T ss_pred             ceeeeeeeecccce--eEEeccCCceEEEEEecccee------eeeec-cCCceeEEee---------ecccCccceeEe
Confidence            56777888888777  889999999999999998776      56665 55554 8888         788877777877


Q ss_pred             cCCCeEEEEecc
Q 016457          348 GEDGRLCCWLSD  359 (389)
Q Consensus       348 ~~dg~v~iW~~~  359 (389)
                      + ++.+.+|.-.
T Consensus       289 ~-~~~~~~~~~~  299 (307)
T KOG0316|consen  289 T-GHGDLFWYQE  299 (307)
T ss_pred             c-CCceeceeeh
Confidence            7 5667777543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.8e-40  Score=271.83  Aligned_cols=316  Identities=17%  Similarity=0.226  Sum_probs=260.1

Q ss_pred             CccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec---CCCCcEEEE
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK---GHSSTVNQI   86 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i   86 (389)
                      +.+|+++|++|-+|+-..  --.++.. ..-|+|+.|+|||.++|+++.||+|.+||-.+|+.+..+.   +|.+.|.++
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal  241 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL  241 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence            788999999999998431  1122233 6789999999999999999999999999999999999987   899999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC---CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS---QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      +|+||+  ..++|++.|.+++|||+.+.+++.++....   ..-..+-|  ++..|++.+.+|.|.+++.....++..+.
T Consensus       242 sWsPDs--~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qkd~lItVSl~G~in~ln~~d~~~~~~i~  317 (603)
T KOG0318|consen  242 SWSPDS--TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QKDHLITVSLSGTINYLNPSDPSVLKVIS  317 (603)
T ss_pred             EECCCC--ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eCCeEEEEEcCcEEEEecccCCChhheec
Confidence            999999  799999999999999999999999988652   33344556  47899999999999999999999888888


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC-------cc--------------------ceee------
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD-------DL--------------------LESV------  210 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~--------------------~~~~------  210 (389)
                       +|...|+++..+|++. .|++|+.||.|.-||..++....       ..                    ++.+      
T Consensus       318 -GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  318 -GHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             -ccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence             9999999999999995 99999999999999987543110       00                    0000      


Q ss_pred             ------------------------------------e--------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          211 ------------------------------------I--------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       211 ------------------------------------~--------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                                                          .        ...-...+++++ +++..+++|+.|+.|++|.+..
T Consensus       396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g  474 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSG  474 (603)
T ss_pred             ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecC
Confidence                                                0        000123556777 7888999999999999999987


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      ...........          |..+++.++|+||+.  ||++|...+.+.+||+.+.+.      ......-|+..|.++
T Consensus       475 ~~l~ee~~~~~----------h~a~iT~vaySpd~~--yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  475 DELKEEAKLLE----------HRAAITDVAYSPDGA--YLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCV  536 (603)
T ss_pred             Ccccceeeeec----------ccCCceEEEECCCCc--EEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEE
Confidence            65443322222          779999999999999  999999999999999998875      122222599999999


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                               +|+|+.+++|||+.|-.|.||+++.+.
T Consensus       537 ---------aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  537 ---------AWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ---------EeCCCceEEEeccccceEEEEEccChh
Confidence                     999999999999999999999999773

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-40  Score=294.23  Aligned_cols=288  Identities=23%  Similarity=0.339  Sum_probs=252.9

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc-cCC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT-RSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~-~~~  114 (389)
                      ...|.++.|+++|+.+++++.++.+++|+..+++  ....+.+|...|.+++|+|++  .++++++.|++|+|||+ ..+
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~--~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG--SYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC--cEEEEecCCceEEEeeccCCC
Confidence            6789999999999999999999999999998777  777788999999999999999  79999999999999999 556


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      ..++++++|...|++++|+|.++.+++++.|++|++||+++++++..+. +|...|++++|++++. +|++++.|+.|++
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~-~l~s~s~d~~i~v  314 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGN-LLVSASYDGTIRV  314 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCC-EEEEcCCCccEEE
Confidence            8999999999999999999999888889999999999999999999999 9999999999999995 9999999999999


Q ss_pred             EecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          195 FDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      ||+.++...  +...+..+..  ++..+.|+ +++.++++++.|+.+++||+..+.....+.++...         ...+
T Consensus       315 wd~~~~~~~--~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~---------~~~~  382 (456)
T KOG0266|consen  315 WDLETGSKL--CLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL---------VRCI  382 (456)
T ss_pred             EECCCCcee--eeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCc---------ceeE
Confidence            999976421  2334444443  58999999 88999999999999999999999999998875310         0244


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-ceeeeeccCCCcccCCCCCCCceeEEEec--C
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-TAVVRSVLPMPSVQGRPAQSHGIFGWTGG--E  349 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~~~l~s~~--~  349 (389)
                      .+...++.+.  ++++|+.|+.|++|++.++..      +..+. +| ...+..+         ++++...++++++  .
T Consensus       383 ~~~~~~~~~~--~i~sg~~d~~v~~~~~~s~~~------~~~l~-~h~~~~~~~~---------~~~~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  383 FSPTLSTGGK--LIYSGSEDGSVYVWDSSSGGI------LQRLE-GHSKAAVSDL---------SSHPTENLIASSSFEG  444 (456)
T ss_pred             ecccccCCCC--eEEEEeCCceEEEEeCCccch------hhhhc-CCCCCceecc---------ccCCCcCeeeecCcCC
Confidence            4556677788  999999999999999998766      56665 89 7888888         9999999999998  7


Q ss_pred             CCeEEEEecc
Q 016457          350 DGRLCCWLSD  359 (389)
Q Consensus       350 dg~v~iW~~~  359 (389)
                      |+.+++|..+
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            9999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6e-42  Score=281.61  Aligned_cols=291  Identities=18%  Similarity=0.214  Sum_probs=250.4

Q ss_pred             Cceeeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           29 KNSIQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        29 ~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      +..+.++.+ ...|.++.|.| .+.+|++++.|+.|+||++.. ++++.++.+|..+|.+++|++.+  ..++|++.|+.
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~  281 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRF  281 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC--Ceeeeeeccee
Confidence            345677778 89999999999 889999999999999999876 89999999999999999999999  79999999999


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      |++||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+. .|-+.|..+.|-+++. .++
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~-rFi  358 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGR-RFI  358 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCc-eEe
Confidence            99999999999999987 4789999999998 667778889999999999999999998 8999999999999996 999


Q ss_pred             EEeCCCcEEEEecCCCCCCCcccee-eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc---eeEEeecccccc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLES-VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ---NVASFENARSLA  260 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~  260 (389)
                      +.+.|+.++||+.+.+.    .+.. .........++..+ |++.++++-+.|+.|.+|.+...-   ..+.|.++.   
T Consensus       359 ssSDdks~riWe~~~~v----~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~---  430 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPV----PIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS---  430 (503)
T ss_pred             eeccCccEEEEEcCCCc----cchhhcchhhccCcceecC-CCCCeehhhccCceEEEEecccccccCHhhhhccee---
Confidence            99999999999999543    1211 12233456678888 788899999999999999976432   234455654   


Q ss_pred             cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                             -.++-..+.|||||.  +|++|+.||.+.+||..+.++      +..+. +|.+++..+         .|.|.
T Consensus       431 -------vaGys~~v~fSpDG~--~l~SGdsdG~v~~wdwkt~kl------~~~lk-ah~~~ci~v---------~wHP~  485 (503)
T KOG0282|consen  431 -------VAGYSCQVDFSPDGR--TLCSGDSDGKVNFWDWKTTKL------VSKLK-AHDQPCIGV---------DWHPV  485 (503)
T ss_pred             -------ccCceeeEEEcCCCC--eEEeecCCccEEEeechhhhh------hhccc-cCCcceEEE---------EecCC
Confidence                   347788999999999  999999999999999999877      56665 999999999         66665


Q ss_pred             c-eeEEEecCCCeEEEEe
Q 016457          341 G-IFGWTGGEDGRLCCWL  357 (389)
Q Consensus       341 ~-~~l~s~~~dg~v~iW~  357 (389)
                      . ..+||||.||.|++|+
T Consensus       486 e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  486 EPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CcceeEecccCceeEecC
Confidence            4 3589999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-40  Score=273.46  Aligned_cols=287  Identities=19%  Similarity=0.290  Sum_probs=253.0

Q ss_pred             cCcceEEEeecCCCC-eEEEEecCCeEEEEeCCC--ce--eeeeec----------CCCCcEEEEEEeCCCCCCEEEEEe
Q 016457           37 GDDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVT--GQ--YSGECK----------GHSSTVNQISFSGPSTPHVLHSCS  101 (389)
Q Consensus        37 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~--~~--~~~~~~----------~~~~~v~~i~~~~~~~~~~l~s~~  101 (389)
                      +..+|.+.+|+|-.. .+++|+.+-..++|++..  ..  ....++          .....|++++|+.+|  ..||+|+
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G--~~LatG~  254 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG--TLLATGS  254 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--CeEEEee
Confidence            478899999999776 899999999999999863  11  111111          134679999999999  7999999


Q ss_pred             cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457          102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      .||.++||+. .|..+.++..|+++|.++.|+..+.+|++++-|+++.+||..+++..+.+. .|..+-..+.|-.+.  
T Consensus       255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~--  330 (524)
T KOG0273|consen  255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSND--  330 (524)
T ss_pred             cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecCc--
Confidence            9999999996 578888999999999999999999999999999999999999999999998 787777889998775  


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS  261 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  261 (389)
                      .|++++.|+.|+++.+.    ...+...+.+|..+|.++.|. +.+.+|++++.|++++||+.......+.+..      
T Consensus       331 ~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~------  399 (524)
T KOG0273|consen  331 EFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVHDLQA------  399 (524)
T ss_pred             eEeecCCCceEEEEEec----CCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchhhhhh------
Confidence            79999999999999998    457888999999999999999 7889999999999999999998888888887      


Q ss_pred             CCccCCCCCceeeecccCCCC-------eEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457          262 DSWTLDDVDYFVDCHYPGEGE-------NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~-------~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  334 (389)
                            |+..|..+.|+|.|.       ++.+++++.|++|++||+..+..      +..+. .|+.+|.++        
T Consensus       400 ------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~------i~~f~-kH~~pVysv--------  458 (524)
T KOG0273|consen  400 ------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP------IHTLM-KHQEPVYSV--------  458 (524)
T ss_pred             ------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce------eEeec-cCCCceEEE--------
Confidence                  778999999999763       34689999999999999999876      78886 899999999        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                       +|||+|+|||+|+.||.|.+|++....
T Consensus       459 -afS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  459 -AFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             -EecCCCcEEEecCCCCeeEeccccchh
Confidence             999999999999999999999998773

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.8e-40  Score=261.95  Aligned_cols=295  Identities=16%  Similarity=0.225  Sum_probs=252.1

Q ss_pred             Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           29 KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        29 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      ...+.++.. .+.|++++.+|+.+++++|+.|..-.||++.+|+....+.+|++.|+++.|+.++  .+||||+.+|.|+
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~  131 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVL  131 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEE
Confidence            455667776 9999999999999999999999999999999999999999999999999999999  8999999999999


Q ss_pred             EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      ||+..++.....+......+.-+.|+|....|++++.||.+.+|.+.++...+.+. +|..++++=.|.|+|+ .++++.
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGK-r~~tgy  209 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGK-RILTGY  209 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCc-eEEEEe
Confidence            99999999999887667889999999999999999999999999999988888888 9999999999999997 999999


Q ss_pred             CCCcEEEEecCCCCCCCccc---------------------------------------eeee--------ccCCceeeE
Q 016457          188 VDGLICTFDTGGDINDDDLL---------------------------------------ESVI--------NVGTSVGKV  220 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~---------------------------------------~~~~--------~~~~~i~~~  220 (389)
                      .||+|++||+.++.+....-                                       ....        .+...+.++
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            99999999999764211000                                       0000        011112222


Q ss_pred             EEec--CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          221 GFFG--ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       221 ~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      .+.|  ..-.+.++|+-||+|.|||+...+..+.+.             |+..|+.+.|-+ ..  +|++++.+|.|+.|
T Consensus       290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-------------he~~V~~l~w~~-t~--~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-------------HEDGVTKLKWLN-TD--YLLTACANGKVRQW  353 (399)
T ss_pred             hhcccccccchhhcccccceEEEEecccchhheecc-------------CCCceEEEEEcC-cc--hheeeccCceEEee
Confidence            2221  223467899999999999998887777765             779999999999 55  88999999999999


Q ss_pred             EeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          299 PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      |.+++++      +..+. ||...|.++         +++|++++++|+|.|++.+|+++.
T Consensus       354 DaRtG~l------~~~y~-GH~~~Il~f---------~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  354 DARTGQL------KFTYT-GHQMGILDF---------ALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eccccce------EEEEe-cCchheeEE---------EEcCCCcEEEEecCCCeEEEEecC
Confidence            9999987      56665 999999999         999999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-41  Score=293.98  Aligned_cols=284  Identities=19%  Similarity=0.240  Sum_probs=249.1

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      +..++.. ...++|..|++|+.+||.|..|..|++|.+... .++.+++ .      .+..     .+=+.+.|-.+.+.
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~------~~l~-----~~d~~sad~~~~~~  436 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-A------SDLS-----NIDTESADVDVDML  436 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-h------hhhc-----cccccccchhhhhc
Confidence            4556666 888999999999999999999999999998754 3333332 1      1211     22233445457778


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      |........++.+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..+. +|..+|..+.|+|.| .+||+++.|
T Consensus       437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~G-yYFatas~D  514 (707)
T KOG0263|consen  437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRG-YYFATASHD  514 (707)
T ss_pred             cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCc-eEEEecCCC
Confidence            888877888899999999999999999999999999999999999999999998 999999999999999 699999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      ++-++|....    ..+.+.+.+|-+.|.++.|+ |+..++++|+.|.++++||..+|..++.|.+            |.
T Consensus       515 ~tArLWs~d~----~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G------------H~  577 (707)
T KOG0263|consen  515 QTARLWSTDH----NKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTG------------HK  577 (707)
T ss_pred             ceeeeeeccc----CCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecC------------CC
Confidence            9999999983    46788888999999999999 7889999999999999999999999999988            77


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                      .+|.+++|+|+|.  ||++|+.||.|.+||+.++..      +..+. +|++.|.++         .||.||..||+||.
T Consensus       578 ~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~------v~~l~-~Ht~ti~Sl---------sFS~dg~vLasgg~  639 (707)
T KOG0263|consen  578 GPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSL------VKQLK-GHTGTIYSL---------SFSRDGNVLASGGA  639 (707)
T ss_pred             CceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcc------hhhhh-cccCceeEE---------EEecCCCEEEecCC
Confidence            9999999999999  999999999999999999876      66665 999999999         99999999999999


Q ss_pred             CCeEEEEeccCCccc
Q 016457          350 DGRLCCWLSDDSSEI  364 (389)
Q Consensus       350 dg~v~iW~~~~~~~~  364 (389)
                      |.+|++||+....+.
T Consensus       640 DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  640 DNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCeEEEEEchhhccc
Confidence            999999999876443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.5e-39  Score=274.27  Aligned_cols=285  Identities=24%  Similarity=0.343  Sum_probs=250.6

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      ++.+ .+.|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|++  +++++++.||.|++|++.
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEEcC
Confidence            3445 7889999999999999999999999999999888888888999999999999998  799999999999999999


Q ss_pred             CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      +++.+..+..|...+.++.|+|++..+++++.++.|.+||+++++....+. .|...+.++.|+|++. ++++++.++.|
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~~~~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQDGTI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence            988888999988899999999886666666669999999999888888887 7899999999999974 88888779999


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      ++||++++    .....+..+...+.++.|+ +++..+++++.++.|++||+..++.+..+..            |...+
T Consensus       160 ~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~------------~~~~i  222 (289)
T cd00200         160 KLWDLRTG----KCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG------------HENGV  222 (289)
T ss_pred             EEEEcccc----ccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhh------------cCCce
Confidence            99999843    3455566778899999999 6777888888899999999998888877754            55789


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCe
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR  352 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  352 (389)
                      .++.|+|++.  ++++++.||.|++|++.+++.      +..+. +|...|.++         +|++++.+|++++.||.
T Consensus       223 ~~~~~~~~~~--~~~~~~~~~~i~i~~~~~~~~------~~~~~-~~~~~i~~~---------~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         223 NSVAFSPDGY--LLASGSEDGTIRVWDLRTGEC------VQTLS-GHTNSVTSL---------AWSPDGKRLASGSADGT  284 (289)
T ss_pred             EEEEEcCCCc--EEEEEcCCCcEEEEEcCCcee------EEEcc-ccCCcEEEE---------EECCCCCEEEEecCCCe
Confidence            9999999976  788888899999999987665      55665 888899999         99999999999999999


Q ss_pred             EEEEe
Q 016457          353 LCCWL  357 (389)
Q Consensus       353 v~iW~  357 (389)
                      |++|+
T Consensus       285 i~iw~  289 (289)
T cd00200         285 IRIWD  289 (289)
T ss_pred             EEecC
Confidence            99996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7e-40  Score=282.38  Aligned_cols=316  Identities=17%  Similarity=0.188  Sum_probs=266.7

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCC--eEEEEecCCeEEEEeCCCcee-eeeecCCCCcEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWS--LMAVSLSTNVVKLYSPVTGQY-SGECKGHSSTVNQ   85 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~   85 (389)
                      ...|+++.|+.+++||+.  .+...++| ++.|.++.|+|+-.  .|++|..|+++++||+.+... +..+..|.+.|++
T Consensus       118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            457899999999999996  57888999 99999999999764  589999999999999986554 7888899999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCC---------------------------------------------------
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------------------------------------------------  114 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------------------------------------------------  114 (389)
                      ++|.+++  ..+++++.|..+.+||+.+.                                                   
T Consensus       198 L~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~  275 (775)
T KOG0319|consen  198 LAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYK  275 (775)
T ss_pred             eeeccCC--ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhh
Confidence            9999998  68888888888888886432                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 016457          115 --------------------------------------------------------------------------------  114 (389)
Q Consensus       115 --------------------------------------------------------------------------------  114 (389)
                                                                                                      
T Consensus       276 ~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~  355 (775)
T KOG0319|consen  276 QRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT  355 (775)
T ss_pred             hccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence                                                                                            


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      .....+.+|...|.++.....+..+++++.|.++++|.++++.    ++.... +|...|.+++++..+..+|++++.|+
T Consensus       356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~  434 (775)
T KOG0319|consen  356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDC  434 (775)
T ss_pred             CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCc
Confidence            0011345677778888844366678888889999999885432    345555 89999999999988888999999999


Q ss_pred             cEEEEecCCCCCCCccc-----eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          191 LICTFDTGGDINDDDLL-----ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      ++++|++...++...++     .....|...|++++++ |+..++++|+.|++.+||++.+.....++.+          
T Consensus       435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le~~~l~~vLsG----------  503 (775)
T KOG0319|consen  435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLEQLRLLGVLSG----------  503 (775)
T ss_pred             eEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeecccCceEEEEeeC----------
Confidence            99999998532222111     1234688999999999 7778999999999999999999999999998          


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW  345 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~  345 (389)
                        |...++++.|+|..+  .++++|.|++|+||.+.+..+      +.++. ||+..|..+         .|-.+|+.|+
T Consensus       504 --H~RGvw~V~Fs~~dq--~laT~SgD~TvKIW~is~fSC------lkT~e-GH~~aVlra---------~F~~~~~qli  563 (775)
T KOG0319|consen  504 --HTRGVWCVSFSKNDQ--LLATCSGDKTVKIWSISTFSC------LKTFE-GHTSAVLRA---------SFIRNGKQLI  563 (775)
T ss_pred             --CccceEEEEeccccc--eeEeccCCceEEEEEecccee------eeeec-CccceeEee---------eeeeCCcEEE
Confidence              669999999999998  889999999999999999887      88887 999999999         9999999999


Q ss_pred             EecCCCeEEEEeccCC
Q 016457          346 TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       346 s~~~dg~v~iW~~~~~  361 (389)
                      ||+.||-|++|++...
T Consensus       564 S~~adGliKlWnikt~  579 (775)
T KOG0319|consen  564 SAGADGLIKLWNIKTN  579 (775)
T ss_pred             eccCCCcEEEEeccch
Confidence            9999999999999976

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-39  Score=278.23  Aligned_cols=311  Identities=15%  Similarity=0.261  Sum_probs=259.9

Q ss_pred             CCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecC-CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           19 NVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ..|...+|.+.  ..++.+.- ...|..++|+..|..||.|+.. |++-||+.+....+...++|...+++++++|||  
T Consensus       285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg--  362 (893)
T KOG0291|consen  285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG--  362 (893)
T ss_pred             cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC--
Confidence            44666677765  46666666 7899999999999999999874 799999999999999999999999999999999  


Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      +++++|+.||.|+|||..++-+..+|..|.+.|+.+.|+..++.+++++.||+|+.||+...+..+++..+..-...|++
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva  442 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA  442 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999998855666788999


Q ss_pred             EecCCCCeEEEEeCCCc-EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-eeEE
Q 016457          175 FVPNNQNKVVSASVDGL-ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-NVAS  252 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~  252 (389)
                      ..|.|. ++.+|+.|.. |.+|++.++    +.+..+.+|+++|.+++|+ +.+..|++++.|.+|++||+-... .+.+
T Consensus       443 vD~sGe-lV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  443 VDPSGE-LVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             EcCCCC-EEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEeeccCceeee
Confidence            999996 8888887764 999999977    5677788999999999999 788899999999999999986542 3334


Q ss_pred             eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc---------CC-CeEEEec---cc
Q 016457          253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI---------GP-PEAVLVG---GH  319 (389)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~---------~~-~~~~~~~---~h  319 (389)
                      +.             +...+..++|.|+|+  -|+.++.||.|.+||...+.+...         ++ ....+..   ..
T Consensus       517 l~-------------i~sdvl~vsfrPdG~--elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  517 LE-------------IRSDVLAVSFRPDGK--ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             Ee-------------eccceeEEEEcCCCC--eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            43             447799999999999  568888999999999987654100         00 0000000   01


Q ss_pred             ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          320 TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       320 ~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ....+.+         +||+||.+|++||....|++|++.+.
T Consensus       582 ~K~Ftti---------~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  582 GKTFTTI---------CYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             CCceEEE---------EEcCCCCEEEecCCcccEEEEECchh
Confidence            1334444         99999999999999999999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-40  Score=266.86  Aligned_cols=291  Identities=15%  Similarity=0.233  Sum_probs=247.6

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      .+.. .+.|.-+.|+++|++||+++.|.+..+|.+...   +..+++.+|..+|..+.|+||.  ++|++++.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd--ryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD--RYLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC--CeEEecCchHheeec
Confidence            3444 889999999999999999999999999987543   5578889999999999999999  799999999999999


Q ss_pred             EccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          110 DTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       110 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      |+.+|.....+... ...+.+++|.|++..+++|+.|+.|..||+. +..+...+.-....|.+++..++|+ .+++.+.
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk-~vl~v~~  374 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK-YVLLVTV  374 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-EEEEEec
Confidence            99999998877643 6789999999999999999999999999986 4445444422335699999999997 8888889


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD  268 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  268 (389)
                      |..|++|+..+..     -+.....+.+|++.+.+ .+++++++.-.+..+++||++..+.+..+.+++          .
T Consensus       375 d~~i~l~~~e~~~-----dr~lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk----------q  438 (519)
T KOG0293|consen  375 DKKIRLYNREARV-----DRGLISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK----------Q  438 (519)
T ss_pred             ccceeeechhhhh-----hhccccccCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhccc----------c
Confidence            9999999998432     12244567799999999 889999999999999999999999999999876          5


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEe
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTG  347 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~  347 (389)
                      ...+..-+|--..+. ++++|++|+.|+||+..++++      +..+. ||...|++|         +|+|... ++|||
T Consensus       439 ~~fiIrSCFgg~~~~-fiaSGSED~kvyIWhr~sgkl------l~~Ls-GHs~~vNcV---------swNP~~p~m~ASa  501 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDK-FIASGSEDSKVYIWHRISGKL------LAVLS-GHSKTVNCV---------SWNPADPEMFASA  501 (519)
T ss_pred             cceEEEeccCCCCcc-eEEecCCCceEEEEEccCCce------eEeec-CCcceeeEE---------ecCCCCHHHhhcc
Confidence            577888888765433 899999999999999999877      78886 999999999         7877654 58999


Q ss_pred             cCCCeEEEEeccCC
Q 016457          348 GEDGRLCCWLSDDS  361 (389)
Q Consensus       348 ~~dg~v~iW~~~~~  361 (389)
                      |+||+||||.....
T Consensus       502 sDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  502 SDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCCeEEEecCCcc
Confidence            99999999988753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-40  Score=268.81  Aligned_cols=267  Identities=17%  Similarity=0.203  Sum_probs=235.2

Q ss_pred             CccccCCCCeEEEEecCcee-eee-ec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEE
Q 016457           13 KSQSCDNVNSIKRFGLKNSI-QTN-FG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISF   88 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~~-~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~   88 (389)
                      ..-+++..|...+|+..... .++ +. +++|+++.|++++..+++|..+|.|++|+..- +.++.+++ |...|.+++|
T Consensus       110 RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlaf  188 (464)
T KOG0284|consen  110 RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAF  188 (464)
T ss_pred             eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheecc
Confidence            45578888999999974321 122 22 89999999999999999999999999999764 44555555 5599999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +|+.  ..+++++.||+|+|||....+....+.+|.-.|.+++|+|..+.++++|.|..|++||.++++++.++. .|+.
T Consensus       189 SpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKn  265 (464)
T KOG0284|consen  189 SPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKN  265 (464)
T ss_pred             CCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccc
Confidence            9988  699999999999999999999989999999999999999999999999999999999999999999998 8999


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      .|..+.|+|++ ++|++++.|..+++||+++    .+.+..+.+|...++++.|+|-...+|.+|+.||.|..|.+...+
T Consensus       266 tVl~~~f~~n~-N~Llt~skD~~~kv~DiR~----mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  266 TVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT----MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             eEEEEEEcCCC-CeeEEccCCceEEEEehhH----hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence            99999999999 6999999999999999993    356778889999999999998888999999999999999987555


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++..+...           |...|++++|+|-|.  +|++|+.|.++++|.-.
T Consensus       341 p~~~i~~A-----------Hd~~iwsl~~hPlGh--il~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  341 PLGEIPPA-----------HDGEIWSLAYHPLGH--ILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccCCCcc-----------cccceeeeeccccce--eEeecCCCcceeeeccC
Confidence            55554432           889999999999998  89999999999999654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.9e-40  Score=262.40  Aligned_cols=278  Identities=17%  Similarity=0.260  Sum_probs=238.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|+|+.+..  ..+++|..|++|+|||.++.+++..+.||++.|.|+.|.  .  ..+++|+.|.+|++||+++++++
T Consensus       197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~--rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--E--RVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             CCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--c--eEEEecCCCceEEEEeccCCchh
Confidence            67899999854  579999999999999999999999999999999999996  3  59999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      .++-.|...|..+.|+  ++++++++.|.+|.+||+.+...   ...+. +|...|+.+.|+..   ++++++.|.+|++
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd~k---yIVsASgDRTikv  344 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---YIVSASGDRTIKV  344 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccccc---eEEEecCCceEEE
Confidence            9999999999999995  78999999999999999987643   34455 89999999999763   9999999999999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      |++.+.    ..++.+.+|...|.++.+.   +.++++|+.|.+|++||+..|.+++.+.+            |++-|.+
T Consensus       345 W~~st~----efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeG------------HEeLvRc  405 (499)
T KOG0281|consen  345 WSTSTC----EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG------------HEELVRC  405 (499)
T ss_pred             Eeccce----eeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhc------------hHHhhhh
Confidence            999965    6788888999999888874   67999999999999999999999999998            7789999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCcccc--C-CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI--G-PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      +.|..  +  -|++|+.||+|+|||+..+.....  + -++..+. .|++.|..+         .|  |...+++++.|.
T Consensus       406 iRFd~--k--rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrL---------QF--D~fqIvsssHdd  469 (499)
T KOG0281|consen  406 IRFDN--K--RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRL---------QF--DEFQIISSSHDD  469 (499)
T ss_pred             eeecC--c--eeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEEE---------ee--cceEEEeccCCC
Confidence            99975  3  579999999999999987754110  0 1233333 577777777         33  445679999999


Q ss_pred             eEEEEeccCCc
Q 016457          352 RLCCWLSDDSS  362 (389)
Q Consensus       352 ~v~iW~~~~~~  362 (389)
                      +|.+||+.+..
T Consensus       470 tILiWdFl~~~  480 (499)
T KOG0281|consen  470 TILIWDFLNGP  480 (499)
T ss_pred             eEEEEEcCCCC
Confidence            99999998763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-37  Score=295.76  Aligned_cols=307  Identities=13%  Similarity=0.155  Sum_probs=242.4

Q ss_pred             CCeEEEEecCceee--e-----eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----e----eeeeecCCCCcE
Q 016457           20 VNSIKRFGLKNSIQ--T-----NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----Q----YSGECKGHSSTV   83 (389)
Q Consensus        20 ~~~i~~w~~~~~~~--~-----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~----~~~~~~~~~~~v   83 (389)
                      +|..++|+......  .     +.. .+.|.+++|+|++++||+|+.|+.|+||+....    .    +...+. +...|
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            45577777653211  1     222 678999999999999999999999999997532    1    122233 35679


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      .+++|++... .+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++..|++++.|+.|++||++++..+..+
T Consensus       536 ~~l~~~~~~~-~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIK-SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCC-CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            9999988542 6999999999999999999999999999999999999997 5677888888999999999999888888


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      .  +...+.++.|++.....|++|+.||.|++||++...   ..+..+.+|...|..+.|.  ++.+|++++.|++|++|
T Consensus       615 ~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiW  687 (793)
T PLN00181        615 K--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLW  687 (793)
T ss_pred             e--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEE
Confidence            7  446799999965433599999999999999998532   2455667899999999996  45689999999999999


Q ss_pred             EcCCC------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc-----CCC
Q 016457          243 DWKDG------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI-----GPP  311 (389)
Q Consensus       243 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-----~~~  311 (389)
                      |+..+      ..+..+.+            |...+..++|+++++  +|++|+.||.|++|+.........     ...
T Consensus       688 d~~~~~~~~~~~~l~~~~g------------h~~~i~~v~~s~~~~--~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        688 DLSMSISGINETPLHSFMG------------HTNVKNFVGLSVSDG--YIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             eCCCCccccCCcceEEEcC------------CCCCeeEEEEcCCCC--EEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            99743      45666665            668889999999998  999999999999999765432000     000


Q ss_pred             eEE-EecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          312 EAV-LVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       312 ~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      +.. ....|...|.++         +|++++.+|++|+.||.|++|++
T Consensus       754 ~~~~~~~~~~~~V~~v---------~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLEVDDASQFISSV---------CWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccccCCCCcEEEEE---------EEcCCCCeEEEecCCCcEEEEec
Confidence            000 012355678888         99999999999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-39  Score=277.77  Aligned_cols=307  Identities=17%  Similarity=0.240  Sum_probs=263.1

Q ss_pred             cccCCCCeEEEEecC--ceeeeeec-CcceEEEeec-CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457           15 QSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPK-NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .....++++.++|..  +..+.+.| ++.|.+|.|- |+.++||+++..+.+++|+..+..+. .+.||++.|.++....
T Consensus       297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~  375 (775)
T KOG0319|consen  297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS  375 (775)
T ss_pred             EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc
Confidence            345567888999665  46677788 9999999975 67789999999999999998876555 7899999999999554


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCce-----ee
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQ-----VA  160 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-----~~  160 (389)
                      .|  .+|+||+.|+++++|.++++    -++....+|...|.+++++..+.. +++++.|+++++|++...+.     +.
T Consensus       376 ~g--~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~  453 (775)
T KOG0319|consen  376 SG--DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL  453 (775)
T ss_pred             cC--cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence            66  69999999999999988443    345667889999999999865544 55566699999999986221     11


Q ss_pred             ----eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC
Q 016457          161 ----CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       161 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (389)
                          +. ..|...|+|++++|+++ +++||+.|.+.+||++.    .......+.+|...|.++.|+ +..+.+++++.|
T Consensus       454 ~~~~t~-~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD  526 (775)
T KOG0319|consen  454 TCRYTE-RAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGD  526 (775)
T ss_pred             hhhHHH-HhhcccccceEecCCCc-eEEecccccceeeeccc----CceEEEEeeCCccceEEEEec-cccceeEeccCC
Confidence                12 37999999999999996 99999999999999999    346677889999999999999 677899999999


Q ss_pred             CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457          237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      ++|+||.+.++.++++|.+            |...|..+.|-.+|.  .|++++.||.|++|++.++.+      +..+.
T Consensus       527 ~TvKIW~is~fSClkT~eG------------H~~aVlra~F~~~~~--qliS~~adGliKlWnikt~eC------~~tlD  586 (775)
T KOG0319|consen  527 KTVKIWSISTFSCLKTFEG------------HTSAVLRASFIRNGK--QLISAGADGLIKLWNIKTNEC------EMTLD  586 (775)
T ss_pred             ceEEEEEeccceeeeeecC------------ccceeEeeeeeeCCc--EEEeccCCCcEEEEeccchhh------hhhhh
Confidence            9999999999999999998            779999999999999  789999999999999999887      67775


Q ss_pred             cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       +|.+.|+++         +.++...+++||+.||.|.+|.=.+.
T Consensus       587 -~H~DrvWaL---------~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  587 -AHNDRVWAL---------SVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             -hccceeEEE---------eecCccceeEecCCCeEEEEeecCcH
Confidence             999999999         88999999999999999999986554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.9e-39  Score=271.48  Aligned_cols=279  Identities=20%  Similarity=0.222  Sum_probs=245.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .+.|.++.|+|....++++-.+|.|.|||.++...++.+.....+|.+..|-+..  +.+++|+.|..|++|+..+++.+
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVfnynt~ekV   90 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVFNYNTGEKV   90 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc--ceEEEecCCceEEEEecccceee
Confidence            7889999999999999999999999999999999999999999999999999888  79999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      ..|..|.+.|.|++.+|..+++++++.|-.|++||.+.. .+.+++. +|...|.+++|+|.+.+.+++++-|++|++|.
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs  169 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWS  169 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence            999999999999999999999999999999999999865 5667777 99999999999999999999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      +.    ...+..++.+|...|+++.+.+. +..+|++|+.|.+|+|||..+..|++++.+            |...|..+
T Consensus       170 lg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG------------Ht~Nvs~v  233 (794)
T KOG0276|consen  170 LG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG------------HTNNVSFV  233 (794)
T ss_pred             cC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc------------ccccceEE
Confidence            98    44677888899999999999842 345999999999999999999999999998            77999999


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      .|+|.-.  ++++|++||+++||+..+.++      ...+. -.-+.|.++         +-.+.+..++.|.+.|.|
T Consensus       234 ~fhp~lp--iiisgsEDGTvriWhs~Ty~l------E~tLn-~gleRvW~I---------~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  234 FFHPELP--IIISGSEDGTVRIWNSKTYKL------EKTLN-YGLERVWCI---------AAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             EecCCCc--EEEEecCCccEEEecCcceeh------hhhhh-cCCceEEEE---------eecCCCCeEEEeccCCcE
Confidence            9999888  899999999999999988765      22222 334667777         333333444555544444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=268.60  Aligned_cols=287  Identities=14%  Similarity=0.179  Sum_probs=253.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-CeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-GTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~  116 (389)
                      ...|++.+|++.-+.|++|-..|...+|.+....+++.+.-...+|..++|+..|  +.|+.|+.. |.+-||+..+...
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG--DWiA~g~~klgQLlVweWqsEsY  342 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG--DWIAFGCSKLGQLLVWEWQSESY  342 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC--CEEEEcCCccceEEEEEeeccce
Confidence            4789999999999999999999999999999999999998878899999999888  799988765 8999999999999


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      +...++|-..+++++++|++..+++|+.||.|++||..++-+..++. .|...|+.+.|+..+. .+++++-||+|+.||
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWD  420 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEeee
Confidence            99999999999999999999999999999999999999999999999 8999999999999994 999999999999999


Q ss_pred             cCCCCCCCccceeeecc-CCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          197 TGGDINDDDLLESVINV-GTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      +...    ...+.+... .....+++.. +.|.++++|+.|. .|.+|++.+|+.+-.+.+            |+++|.+
T Consensus       421 lkRY----rNfRTft~P~p~QfscvavD-~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG------------HEgPVs~  483 (893)
T KOG0291|consen  421 LKRY----RNFRTFTSPEPIQFSCVAVD-PSGELVCAGAQDSFEIFVWSVQTGQLLDILSG------------HEGPVSG  483 (893)
T ss_pred             eccc----ceeeeecCCCceeeeEEEEc-CCCCEEEeeccceEEEEEEEeecCeeeehhcC------------CCCccee
Confidence            9843    334444322 2345677777 6788888998887 899999999999999998            8899999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      ++|+|.++  .|++|+.|.+|++|++-....     .+..+  .+...|..+         +|+|||+-|++++.||.|.
T Consensus       484 l~f~~~~~--~LaS~SWDkTVRiW~if~s~~-----~vEtl--~i~sdvl~v---------sfrPdG~elaVaTldgqIt  545 (893)
T KOG0291|consen  484 LSFSPDGS--LLASGSWDKTVRIWDIFSSSG-----TVETL--EIRSDVLAV---------SFRPDGKELAVATLDGQIT  545 (893)
T ss_pred             eEEccccC--eEEeccccceEEEEEeeccCc-----eeeeE--eeccceeEE---------EEcCCCCeEEEEEecceEE
Confidence            99999999  899999999999999976532     02344  366778888         9999999999999999999


Q ss_pred             EEeccCCcc
Q 016457          355 CWLSDDSSE  363 (389)
Q Consensus       355 iW~~~~~~~  363 (389)
                      +||++...+
T Consensus       546 f~d~~~~~q  554 (893)
T KOG0291|consen  546 FFDIKEAVQ  554 (893)
T ss_pred             EEEhhhcee
Confidence            999998733

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-39  Score=255.22  Aligned_cols=267  Identities=21%  Similarity=0.244  Sum_probs=244.2

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQIS   87 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~   87 (389)
                      +..++++.|++|++||..  +....++| .++|.+++|+..|++|++++.|-.+++||.++ .++++.+.+|...|.+++
T Consensus       121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~  200 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVF  200 (406)
T ss_pred             eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEE
Confidence            456788899999999985  57778888 78899999999999999999999999999986 567788889999999999


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      |-|.+  +++++++.|.+|+.|++.++.++.++.+|..-|..++.+.++..+++++.|.+|++|-+.++++...+. .|.
T Consensus       201 f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hE  277 (406)
T KOG0295|consen  201 FLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHE  277 (406)
T ss_pred             EEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccc
Confidence            99999  899999999999999999999999999999999999999777777777779999999999999988888 899


Q ss_pred             CCeeEEEEecCC--------------CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          168 EDVTQVHFVPNN--------------QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       168 ~~v~~~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      .+|.|++|-|..              ..++.+++.|++|++||+.++    .++..+.+|...|..++|+ |.|++|+++
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~-p~Gkyi~Sc  352 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFS-PGGKYILSC  352 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEc-CCCeEEEEE
Confidence            999999998752              138999999999999999966    6888999999999999999 889999999


Q ss_pred             ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      ..|+++++||++++++.+.+..            |+.-++++.|+.+..  |+++|+-|..+++|.-
T Consensus       353 aDDktlrvwdl~~~~cmk~~~a------------h~hfvt~lDfh~~~p--~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  353 ADDKTLRVWDLKNLQCMKTLEA------------HEHFVTSLDFHKTAP--YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecCCcEEEEEeccceeeeccCC------------CcceeEEEecCCCCc--eEEeccccceeeeeec
Confidence            9999999999999999999986            778999999999888  9999999999999964

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.2e-37  Score=256.33  Aligned_cols=333  Identities=17%  Similarity=0.209  Sum_probs=264.9

Q ss_pred             CccccCCCCeEEEEecCceee----eeec-CcceEEEeecCCCCeEEEEec--CCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           13 KSQSCDNVNSIKRFGLKNSIQ----TNFG-DDYVFEIVPKNDWSLMAVSLS--TNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~~~----~~~~-~~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      ..|++...|.||+|+..+.-.    +++. .++|..++|+.|+++|++.+.  ++..+++-.++|..+..+.||...|++
T Consensus        73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins  152 (603)
T KOG0318|consen   73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS  152 (603)
T ss_pred             EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence            577888889999999864222    2233 889999999999998888775  223444444478889999999999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--  163 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  163 (389)
                      +.|-|.. |-.++||+.|++|.+|+-.-.+...+++.|..-|.|+.|+|++..+++++.||+|.+||-.+++.+..+.  
T Consensus       153 ~~~KpsR-PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~  231 (603)
T KOG0318|consen  153 VDFKPSR-PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS  231 (603)
T ss_pred             eeccCCC-ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC
Confidence            9999876 4789999999999999977778888889999999999999999999999999999999999999998886  


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC---------------------------------------CC
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---------------------------------------DD  204 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------------------------------~~  204 (389)
                      .+|.+.|.+++|+|++. .+++++.|.+++|||..+...                                       ..
T Consensus       232 ~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence            47999999999999996 999999999999999975420                                       11


Q ss_pred             ccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE-----------eeccc----------------
Q 016457          205 DLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS-----------FENAR----------------  257 (389)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~~~~~----------------  257 (389)
                      ..+..+.+|...|+++..+ +++++|++++.||.|.-|+..++..-+.           +....                
T Consensus       311 ~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~  389 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI  389 (603)
T ss_pred             ChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence            2445567888999999999 7779999999999999999876532211           10000                


Q ss_pred             -------------ccccCC-----------------------------ccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          258 -------------SLASDS-----------------------------WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       258 -------------~~~~~~-----------------------------~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                                   .+..+.                             ...+-.-...+++++|+++  .++.|+.||.|
T Consensus       390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~--~vaVGG~Dgkv  467 (603)
T KOG0318|consen  390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS--EVAVGGQDGKV  467 (603)
T ss_pred             ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC--EEEEecccceE
Confidence                         000000                             0000122346788999999  88999999999


Q ss_pred             EEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCccc
Q 016457          296 GYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEI  364 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~  364 (389)
                      +||.+.....    .....+. .|..+|+++         +||||+.|||+|...+.|-+|++......
T Consensus       468 hvysl~g~~l----~ee~~~~-~h~a~iT~v---------aySpd~~yla~~Da~rkvv~yd~~s~~~~  522 (603)
T KOG0318|consen  468 HVYSLSGDEL----KEEAKLL-EHRAAITDV---------AYSPDGAYLAAGDASRKVVLYDVASREVK  522 (603)
T ss_pred             EEEEecCCcc----cceeeee-cccCCceEE---------EECCCCcEEEEeccCCcEEEEEcccCcee
Confidence            9999988664    1123333 799999999         99999999999999999999999987553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-39  Score=254.37  Aligned_cols=284  Identities=21%  Similarity=0.296  Sum_probs=252.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee--------cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC--------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ++.+-|..|+|||++|++|+.||.|.+||..+|+..+.+        .-+..+|.|+.|+.+.  ..|++|+.||.|++|
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIKVW  290 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEEEE
Confidence            778889999999999999999999999999999766543        3478899999999998  799999999999999


Q ss_pred             EccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          110 DTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       110 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      .+.+|.+++.|. .|...|+|+.|+.++..+++++.|.++++.-+++|+++..+. +|.+.|+...|.++| +.+++++.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG-~~iisaSs  368 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG-HHIISASS  368 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC-CeEEEecC
Confidence            999999999997 789999999999999999999999999999999999999999 999999999999999 49999999


Q ss_pred             CCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          189 DGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      ||+|++|+..+.    .++..+.  +...+|.++...|.+...++++...++++|-++. |+.++++...+.        
T Consensus       369 DgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR--------  435 (508)
T KOG0275|consen  369 DGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR--------  435 (508)
T ss_pred             CccEEEecCcch----hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc--------
Confidence            999999999965    3343333  3456889999998888899999999999999985 788888875542        


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEE
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWT  346 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s  346 (389)
                       ..+...+++.+|.|.  |+.+.++|+.++.|.+.++++      ...+. .|...|..+         +-+|..+.||+
T Consensus       436 -EgGdFi~~~lSpkGe--wiYcigED~vlYCF~~~sG~L------E~tl~-VhEkdvIGl---------~HHPHqNllAs  496 (508)
T KOG0275|consen  436 -EGGDFINAILSPKGE--WIYCIGEDGVLYCFSVLSGKL------ERTLP-VHEKDVIGL---------THHPHQNLLAS  496 (508)
T ss_pred             -cCCceEEEEecCCCc--EEEEEccCcEEEEEEeecCce------eeeee-ccccccccc---------ccCcccchhhh
Confidence             346778889999999  999999999999999999887      45565 888888888         77888888899


Q ss_pred             ecCCCeEEEEe
Q 016457          347 GGEDGRLCCWL  357 (389)
Q Consensus       347 ~~~dg~v~iW~  357 (389)
                      -++||.+++|+
T Consensus       497 YsEDgllKLWk  507 (508)
T KOG0275|consen  497 YSEDGLLKLWK  507 (508)
T ss_pred             hcccchhhhcC
Confidence            99999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=233.94  Aligned_cols=252  Identities=15%  Similarity=0.237  Sum_probs=223.9

Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFW  151 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  151 (389)
                      ....+..+.++|.++.|+-+|  ++.++++.|.+|++|++..+.+++++.+|..+|..++.+.++..++++|.|..|.+|
T Consensus         9 r~~~l~~~qgaV~avryN~dG--nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDG--NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCC--CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            345677899999999999999  799999999999999999999999999999999999999899999999999999999


Q ss_pred             ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE
Q 016457          152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW  231 (389)
Q Consensus       152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  231 (389)
                      |+.+++.++.+. +|...|+.++|+.+.. .+++|+.|..+++||.++.  ..++++.+......|.++...   +..++
T Consensus        87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~v~---~heIv  159 (307)
T KOG0316|consen   87 DVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSIDVA---EHEIV  159 (307)
T ss_pred             EcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEEec---ccEEE
Confidence            999999999999 9999999999999985 9999999999999999965  456666666777889999886   34799


Q ss_pred             EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCC
Q 016457          232 CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPP  311 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~  311 (389)
                      +|+.||+++.||++.|+....+.+              .+|++++|+++++  .+++++.|+++++.|-+++++      
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g--------------~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGkl------  217 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFG--------------HPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKL------  217 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcC--------------CcceeEEecCCCC--EEEEeeccceeeecccchhHH------
Confidence            999999999999999988877766              7899999999999  889999999999999999987      


Q ss_pred             eEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          312 EAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       312 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                      +.... ||...-..+       .++++.....+++|++||.|.+|++.+..
T Consensus       218 L~sYk-Ghkn~eykl-------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  218 LKSYK-GHKNMEYKL-------DCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             HHHhc-ccccceeee-------eeeecccceeEEeccCCceEEEEEeccce
Confidence            56665 887544444       11677777889999999999999998773

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-37  Score=234.82  Aligned_cols=292  Identities=16%  Similarity=0.188  Sum_probs=244.4

Q ss_pred             eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      ++| ..+++.+.|+.+|.+|.+++.|.++.+|-..+|+.+.++.||++.|+++....+.  ..+++|+.|.++++||+.+
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc--ceeeeccccceeEEEEcCC
Confidence            445 7889999999999999999999999999988999999999999999999998877  7999999999999999999


Q ss_pred             CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECc-------CCceeeeeeecccCCeeEEEEecCCCC
Q 016457          114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWR-------NKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      |+++.+++. ..+|..+.|++.++.++++..     .+.|.++|++       ..++...+. .+.+.++.+.|.|.++ 
T Consensus        84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~-  160 (327)
T KOG0643|consen   84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGE-  160 (327)
T ss_pred             CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCC-
Confidence            999999997 589999999988888877765     4789999998       445677777 6789999999999996 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS  261 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  261 (389)
                      .|++|..||.|.+||++++.   ..+.....|...|+.++++ ++..++++++.|.+-++||..+.+++++|..      
T Consensus       161 ~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------  230 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------  230 (327)
T ss_pred             EEEEecCCCcEEEEEcccCc---eeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeee------
Confidence            99999999999999999764   4455566788999999999 7889999999999999999999999999984      


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEEecCCce--EEEEEeccCCcc------ccCCCeEEEecccceeeeeccCCCccc
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT--VGYFPVNYGGAA------TIGPPEAVLVGGHTAVVRSVLPMPSVQ  333 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~--i~i~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~  333 (389)
                             ..++++.+++|..+  +++.|+....  |.--+.+.++..      ...+.+..+. +|-++|+++       
T Consensus       231 -------e~PvN~aaisP~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk-GHFGPINsv-------  293 (327)
T KOG0643|consen  231 -------ERPVNTAAISPLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK-GHFGPINSV-------  293 (327)
T ss_pred             -------cccccceecccccc--eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc-ccccCccee-------
Confidence                   47899999999877  5555443221  211122222110      0111234554 999999999       


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          334 GRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       334 ~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                        +|+|+|+-.+|||+||.||+..++.
T Consensus       294 --AfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  294 --AFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             --EECCCCcccccCCCCceEEEEEecc
Confidence              9999999999999999999997764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.6e-39  Score=254.76  Aligned_cols=308  Identities=18%  Similarity=0.276  Sum_probs=251.7

Q ss_pred             eeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           34 TNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      .+.| .++|.|++=+|.. ..+|+|+.||.|+|||+.+.++...+.+|.+.|..|++.. +   .+++++.|++|+.|.+
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-c---ceEEecCCcceeeeec
Confidence            4556 8999999999987 7899999999999999999999999999999999999986 3   6899999999999998


Q ss_pred             cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      .- .+++++.+ +..+..+.-+..+..++++|  ..|.|||.....++.++. -....|.++.|+|...++|++++.|+.
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             cC-Ccceeeec-cccccccccccccccccccC--ceeeecccccCCccceee-cCCCceeEEecCCCcchheeeeccCCc
Confidence            74 57777776 57888888775556666665  489999999999999998 456779999999999889999999999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCC
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      |.+||++...+..+.+     ....-+.++|+| +...+++++.|..++.||++.. .++..+.+            |..
T Consensus       212 IvLyD~R~~~Pl~KVi-----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~d------------hvs  273 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVI-----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKD------------HVS  273 (433)
T ss_pred             eEEEecccCCccceee-----eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcc------------cce
Confidence            9999999654322222     234567899995 7778999999999999999875 34555555            889


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc---eeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT---AVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      .|.++.|+|.|+  -+++||.|.+|+||.+..+.-       ..+.  |+   ..|.+|         .||.|.+|++||
T Consensus       274 AV~dVdfsptG~--EfvsgsyDksIRIf~~~~~~S-------RdiY--htkRMq~V~~V---------k~S~Dskyi~SG  333 (433)
T KOG0268|consen  274 AVMDVDFSPTGQ--EFVSGSYDKSIRIFPVNHGHS-------RDIY--HTKRMQHVFCV---------KYSMDSKYIISG  333 (433)
T ss_pred             eEEEeccCCCcc--hhccccccceEEEeecCCCcc-------hhhh--hHhhhheeeEE---------EEeccccEEEec
Confidence            999999999999  559999999999999987654       2222  33   466777         999999999999


Q ss_pred             cCCCeEEEEeccCC--------cccchhhhhhHHhhcCc-----ccccccCCCC
Q 016457          348 GEDGRLCCWLSDDS--------SEINRSWISNAMVMRSP-----KTHKKNRHNP  388 (389)
Q Consensus       348 ~~dg~v~iW~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  388 (389)
                      |+|+.||+|+..++        .|.....+.+.+..+++     +++-++|+.|
T Consensus       334 Sdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lP  387 (433)
T KOG0268|consen  334 SDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLP  387 (433)
T ss_pred             CCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCC
Confidence            99999999999877        44455556667766663     5666777776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-36  Score=231.85  Aligned_cols=268  Identities=15%  Similarity=0.186  Sum_probs=220.2

Q ss_pred             CccccCCCCeEEEEecCc-----eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCcE
Q 016457           13 KSQSCDNVNSIKRFGLKN-----SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSSTV   83 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-----~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v   83 (389)
                      ..|||+.|..|++|+...     +...+..  +..|++++|+|.|++||+|+.|.++.||.-..+  +++..+.||...|
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEV  108 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEV  108 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccce
Confidence            479999999999999873     3333333  789999999999999999999999999986544  6788999999999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCc
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKK  157 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~  157 (389)
                      .+++|+++|  .+||+++.|+.|-||.+..+   ++...++.|...|..+.|+|....|++++.|++|++|+-.   .-.
T Consensus       109 K~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~  186 (312)
T KOG0645|consen  109 KCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE  186 (312)
T ss_pred             eEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence            999999999  79999999999999998743   5778899999999999999999999999999999999866   336


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                      +++++. +|...|.+++|++.|. .|++++.|++++||-..+.      +  ...|...+..++|.   ...|++++.|+
T Consensus       187 c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~------~--~~~~sr~~Y~v~W~---~~~IaS~ggD~  253 (312)
T KOG0645|consen  187 CVQTLD-GHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD------L--SGMHSRALYDVPWD---NGVIASGGGDD  253 (312)
T ss_pred             EEEEec-CccceEEEEEecCCCc-eEEEecCCcceEeeeeccC------c--chhcccceEeeeec---ccceEeccCCC
Confidence            788898 8999999999999995 9999999999999987632      1  12366788999997   33899999999


Q ss_pred             cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      .|++|.-...-.-..+......     ...|...|+++.|.|.... .|++|+.||.|++|.+.
T Consensus       254 ~i~lf~~s~~~d~p~~~l~~~~-----~~aHe~dVNsV~w~p~~~~-~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  254 AIRLFKESDSPDEPSWNLLAKK-----EGAHEVDVNSVQWNPKVSN-RLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEEEecCCCCCchHHHHHhh-----hcccccccceEEEcCCCCC-ceeecCCCceEEEEEec
Confidence            9999986532111111100000     0118889999999995333 68999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.4e-38  Score=238.71  Aligned_cols=283  Identities=17%  Similarity=0.238  Sum_probs=249.0

Q ss_pred             CcceEEEeecC---CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKN---DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      ..+|..++|+|   +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|+....+.+.  ...++++.|-+-++||.-+|
T Consensus        14 trpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--~~aasaaadftakvw~a~tg   91 (334)
T KOG0278|consen   14 TRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--TRAASAAADFTAKVWDAVTG   91 (334)
T ss_pred             CcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--hhhhhhcccchhhhhhhhhh
Confidence            78899999975   88899999999999999999999999999999999999998777  68899999999999999999


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      ..+.+|+ |+..|..++|+.+.++|++++.+..+++||++..+ +...+. +|.+.|..+.|..... .|++++.|++|+
T Consensus        92 delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~iLSSadd~tVR  168 (334)
T KOG0278|consen   92 DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CILSSADDKTVR  168 (334)
T ss_pred             hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eEEeeccCCceE
Confidence            9999987 67999999999999999999999999999998754 566777 8999999999998885 899999999999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      +||.+++.     .......+.+|+++.++ +++.+ ++....+.|.+||..+...++.+..             ...|.
T Consensus       169 LWD~rTgt-----~v~sL~~~s~VtSlEvs-~dG~i-lTia~gssV~Fwdaksf~~lKs~k~-------------P~nV~  228 (334)
T KOG0278|consen  169 LWDHRTGT-----EVQSLEFNSPVTSLEVS-QDGRI-LTIAYGSSVKFWDAKSFGLLKSYKM-------------PCNVE  228 (334)
T ss_pred             EEEeccCc-----EEEEEecCCCCcceeec-cCCCE-EEEecCceeEEeccccccceeeccC-------------ccccc
Confidence            99999764     33344467899999999 67764 5555678899999999999988874             36788


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      +..++|+..  ++++|++|+.++.||..++..      +.....+|-++|.+|         .|+|||...++||+||+|
T Consensus       229 SASL~P~k~--~fVaGged~~~~kfDy~TgeE------i~~~nkgh~gpVhcV---------rFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  229 SASLHPKKE--FFVAGGEDFKVYKFDYNTGEE------IGSYNKGHFGPVHCV---------RFSPDGELYASGSEDGTI  291 (334)
T ss_pred             cccccCCCc--eEEecCcceEEEEEeccCCce------eeecccCCCCceEEE---------EECCCCceeeccCCCceE
Confidence            889999887  789999999999999999886      444446999999999         999999999999999999


Q ss_pred             EEEeccCCc
Q 016457          354 CCWLSDDSS  362 (389)
Q Consensus       354 ~iW~~~~~~  362 (389)
                      |+|......
T Consensus       292 rlWQt~~~~  300 (334)
T KOG0278|consen  292 RLWQTTPGK  300 (334)
T ss_pred             EEEEecCCC
Confidence            999998763

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.5e-37  Score=244.02  Aligned_cols=273  Identities=18%  Similarity=0.245  Sum_probs=239.4

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      -.++++.|++|++||+.  +...++.| ...|..+++++-..++++++.|+.|+.||++..+.+..+.||-..|.|++.+
T Consensus       165 wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh  244 (460)
T KOG0285|consen  165 WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH  244 (460)
T ss_pred             eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc
Confidence            46899999999999985  56667777 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      |.-  +.|++|+.|.++++||+++...+..+.+|..+|..+.+.|.++.+++++.|++|++||++.++.+.++. .|...
T Consensus       245 PTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkks  321 (460)
T KOG0285|consen  245 PTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKS  321 (460)
T ss_pred             ccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccce
Confidence            988  799999999999999999999999999999999999999999999999999999999999999999998 89999


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      +.+++.+|.. +.|++++.| .|+-|++..+    ..+..+.+|..-|.+++.+ .+ .++++|+.+|.|.+||.+++-.
T Consensus       322 vral~lhP~e-~~fASas~d-nik~w~~p~g----~f~~nlsgh~~iintl~~n-sD-~v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  322 VRALCLHPKE-NLFASASPD-NIKQWKLPEG----EFLQNLSGHNAIINTLSVN-SD-GVLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             eeEEecCCch-hhhhccCCc-cceeccCCcc----chhhccccccceeeeeeec-cC-ceEEEcCCceEEEEEecCcCcc
Confidence            9999999998 589999877 5899999844    4566677888999999987 33 4899999999999999999876


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .+.........    ....+..|...+|...|.  -|++|..|.+|++|.-+.
T Consensus       394 yQ~~~t~vqpG----Sl~sEagI~as~fDktg~--rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  394 YQRGQTIVQPG----SLESEAGIFASCFDKTGS--RLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccccccCC----ccccccceeEEeecccCc--eEEeccCCcceEEEeccc
Confidence            65543221111    112457789999999888  679999999999997654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7e-37  Score=237.46  Aligned_cols=271  Identities=16%  Similarity=0.223  Sum_probs=239.3

Q ss_pred             CCCCccccCCCCeEEEEecC---ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLK---NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      +-+..||++.|..|.+|+.-   +..-.+.+ .++|..+.|.+|++.|++++.|.+|+.||+++|+....+++|.+.|++
T Consensus        58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs  137 (338)
T KOG0265|consen   58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNS  137 (338)
T ss_pred             CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeee
Confidence            55678999999999999964   34556667 999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +.-+.-+ +.++.|++.|+++++||+++...++++.. +.+++++.|...+..+++++-|+.|++||++.+.....+. +
T Consensus       138 ~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-G  214 (338)
T KOG0265|consen  138 LDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-G  214 (338)
T ss_pred             cCccccC-CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEee-c
Confidence            9855444 36888999999999999999999888865 5789999999899999999999999999999999999999 9


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC----CceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG----TSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      |.++|+.|..+|+|. .+++-+.|.++++||++.......++..+.++.    .....++|+ +++..+.+++.|..+++
T Consensus       215 h~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws-p~~~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  215 HADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS-PNGTKITAGSADRFVYV  292 (338)
T ss_pred             ccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc-CCCCccccccccceEEE
Confidence            999999999999996 999999999999999996554445455555543    345677898 78889999999999999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ||......+..+.+            |...|..+.|+|...  +|.+++.|.+|++=+
T Consensus       293 wd~~~r~~lyklpG------------h~gsvn~~~Fhp~e~--iils~~sdk~i~lge  336 (338)
T KOG0265|consen  293 WDTTSRRILYKLPG------------HYGSVNEVDFHPTEP--IILSCSSDKTIYLGE  336 (338)
T ss_pred             eecccccEEEEcCC------------cceeEEEeeecCCCc--EEEEeccCceeEeec
Confidence            99998889999988            779999999999988  899999999998743

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.5e-37  Score=268.15  Aligned_cols=260  Identities=18%  Similarity=0.249  Sum_probs=226.9

Q ss_pred             CccccCCCCeEEEEecCc-eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457           13 KSQSCDNVNSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      ..|-+-.|..|++|.+.. .++.+++...         ...+=+.+.|-.+.+.|........++.+|.++|....|+|+
T Consensus       392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~---------l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd  462 (707)
T KOG0263|consen  392 MLACGFVDSSVRVWSLTPKKLKKLKDASD---------LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD  462 (707)
T ss_pred             hhhccccccEEEEEecchhhhccccchhh---------hccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence            455666778888888763 3344433111         112223444555777777777777789999999999999999


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                      .  ++|++++.|+++|+|.+.+..++-.+++|..+|+.+.|+|.|-++++++.|++-++|......+++.+. +|...|.
T Consensus       463 ~--rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~  539 (707)
T KOG0263|consen  463 R--RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVD  539 (707)
T ss_pred             c--cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccc
Confidence            9  799999999999999999999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      |+.|+|+. +++++|+.|.+|++||..++    ..++.+.+|..+|.+++|+ ++|.+|++|+.|+.|.+||+.+++.+.
T Consensus       540 cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I~iWDl~~~~~v~  613 (707)
T KOG0263|consen  540 CVSFHPNS-NYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLIKIWDLANGSLVK  613 (707)
T ss_pred             eEEECCcc-cccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEc-CCCceEeecccCCcEEEEEcCCCcchh
Confidence            99999999 59999999999999999976    4688889999999999999 799999999999999999999999999


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      .+.+            |.+.|.++.|+.+|.  .|++|+.|.+|++||+....
T Consensus       614 ~l~~------------Ht~ti~SlsFS~dg~--vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  614 QLKG------------HTGTIYSLSFSRDGN--VLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             hhhc------------ccCceeEEEEecCCC--EEEecCCCCeEEEEEchhhc
Confidence            9988            779999999999999  99999999999999987543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-37  Score=262.18  Aligned_cols=255  Identities=16%  Similarity=0.212  Sum_probs=237.6

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDW  153 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  153 (389)
                      .++..++..|.++.|+|..  ..++++-.+|.|.|||.++...++.+....-+|.+..|-+..+.+++|+.|..|++|+.
T Consensus         7 rk~~~rSdRVKsVd~HPte--Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTE--PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCC--ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            4455689999999999998  79999999999999999999999999998999999999989999999999999999999


Q ss_pred             cCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      .+++.+.++. +|.+.|+|++.+|..+ ++++++.|-.|++||...   ...+...+.+|...|.+++|+|.+.+.++++
T Consensus        85 nt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   85 NTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             ccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            9999999999 9999999999999998 999999999999999994   4567788899999999999999999999999


Q ss_pred             ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE
Q 016457          234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~  313 (389)
                      +-|++|++|.+.+..+..++.+            |...|.++.|-+-|++.||++|+.|.+|+|||..+..+      ++
T Consensus       160 sLDrTVKVWslgs~~~nfTl~g------------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C------V~  221 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEG------------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC------VQ  221 (794)
T ss_pred             eccccEEEEEcCCCCCceeeec------------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHH------HH
Confidence            9999999999999999999997            77999999999999888999999999999999999887      78


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~  363 (389)
                      ++. ||...|..+         .|+|.-..++|||+||+||||+..+-..
T Consensus       222 TLe-GHt~Nvs~v---------~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  222 TLE-GHTNNVSFV---------FFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             Hhh-cccccceEE---------EecCCCcEEEEecCCccEEEecCcceeh
Confidence            886 999999999         8888888999999999999999876633

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-37  Score=232.27  Aligned_cols=283  Identities=14%  Similarity=0.158  Sum_probs=230.6

Q ss_pred             EEEeecCC-CCeEEEEec-------CCeEEEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           42 FEIVPKND-WSLMAVSLS-------TNVVKLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        42 ~~~~~~~~-~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      .++.|+|- .++||++..       .|++.|.++...+-+..+.  .-.+.+..++|+++.. +.+++++.||++++||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE-NQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc-ceEEEEecCceEEEecc
Confidence            47888883 234444432       6899999986544443332  2567899999999876 78999999999999996


Q ss_pred             cC-CeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          112 RS-FHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       112 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      .. ..++..++.|+.+|.++.|++..+. +++++-|++|++||...++.+.++. +|...|...+|+|..++++++++.|
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCC
Confidence            53 4688999999999999999986655 4455559999999999999999999 9999999999999999999999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDD  268 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (389)
                      +.+++||++..    .....+..|...+.++.|+.-+...|++|+.|+.|+.||+++.+ ++..+.+            |
T Consensus       170 ~~l~lwdvr~~----gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g------------h  233 (311)
T KOG0277|consen  170 GTLRLWDVRSP----GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG------------H  233 (311)
T ss_pred             ceEEEEEecCC----CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC------------C
Confidence            99999999943    33344788999999999998888899999999999999998764 4555655            7


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC-CceeEEEe
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS-HGIFGWTG  347 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~-~~~~l~s~  347 (389)
                      .-.|..++|||.... +|++++.|-+++|||...+.-     .+.+. .-|++.|..+         .||+ +..++|++
T Consensus       234 ~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds-----~~e~~-~~HtEFv~g~---------Dws~~~~~~vAs~  297 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDS-----AIETV-DHHTEFVCGL---------DWSLFDPGQVAST  297 (311)
T ss_pred             ceEEEEEecCcchhh-HhhhccccceEEecccccchh-----hhhhh-hccceEEecc---------ccccccCceeeec
Confidence            799999999998655 689999999999999986543     12233 3789999999         6664 46678999


Q ss_pred             cCCCeEEEEec
Q 016457          348 GEDGRLCCWLS  358 (389)
Q Consensus       348 ~~dg~v~iW~~  358 (389)
                      +.|+.++||+.
T Consensus       298 gWDe~l~Vw~p  308 (311)
T KOG0277|consen  298 GWDELLYVWNP  308 (311)
T ss_pred             ccccceeeecc
Confidence            99999999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=240.37  Aligned_cols=327  Identities=37%  Similarity=0.631  Sum_probs=255.6

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE--cCC-CCe
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT--AGS-QEI  127 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-~~v  127 (389)
                      ..+|++.++|.|++||..+++.+..++++...++.++|....+++.+.+|+.||+|++||+++......+.  .+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            57899999999999999999999999999999999999876556899999999999999999876554443  332 467


Q ss_pred             EEEEEeCCCCeEEEeec-----CCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC
Q 016457          128 FCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (389)
                      .|++.+ ....++++|.     +-.|.+||+|..+. +..+.+.|...|+++.|+|..+++|++|+.||.|.+||+... 
T Consensus       121 ~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d-  198 (376)
T KOG1188|consen  121 ICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD-  198 (376)
T ss_pred             eEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC-
Confidence            788876 3455555554     67899999998776 788877999999999999999999999999999999999855 


Q ss_pred             CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          202 NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ++...+.....+...|..+.|..+..+.+.+.+...+..+|+++.+.....+......+...|......++...-. |.+
T Consensus       199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~  277 (376)
T KOG1188|consen  199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGD  277 (376)
T ss_pred             cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCC
Confidence            4566777788899999999999776678999999999999999998876665543322222232223345555433 434


Q ss_pred             CeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..++++.|+.-+...++-+.........+++..+..+|...|+++         .|...+.+++|||+||.|.+|+.++.
T Consensus       278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i---------~~~~~~~~l~TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI---------LFDVKNDVLYTGGEDGLLQAWKVEDA  348 (376)
T ss_pred             cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH---------hhhcccceeeccCCCceEEEEecCCc
Confidence            444555665567777776654333333455677776788999999         78888889999999999999999888


Q ss_pred             cccchhhhhhHHhhcCcccccccCCCCC
Q 016457          362 SEINRSWISNAMVMRSPKTHKKNRHNPY  389 (389)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (389)
                      .+....+-+.....+..+.+|+.++.||
T Consensus       349 ~e~~~s~~esl~i~ke~r~Rk~~~~~~y  376 (376)
T KOG1188|consen  349 TEINFSWTESLKIVKEPRNRKKNHHSPY  376 (376)
T ss_pred             cccccccccccccccCccchhhccCCCC
Confidence            8888877666666677777777778888

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.1e-36  Score=238.24  Aligned_cols=290  Identities=18%  Similarity=0.259  Sum_probs=236.8

Q ss_pred             ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC-CCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS-TPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~i  108 (389)
                      ++...+.+++.|.++...  ++.|++|+.||.+++||.. |+....+.+|.++|.+++|...+ ....|++++.|.++++
T Consensus        97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen   97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            345555557888888777  5799999999999999965 89999999999999988886544 1135999999999999


Q ss_pred             EEccCCeE----EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-------------------------Ccee
Q 016457          109 WDTRSFHE----VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-------------------------KKQV  159 (389)
Q Consensus       109 wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------------------~~~~  159 (389)
                      |.++.+..    +..-++|+..|.++...+++..+++++.|..|++|+..+                         +.++
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            99886643    334458999999999999999999999999999999321                         2345


Q ss_pred             eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      .++. +|..+|.++.|++.  ..+++++.|.+|+.||+.++.     .......+..+.++.++ +...+|++|+.|..|
T Consensus       254 vtl~-GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ksl~~i~~~-~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  254 VTLE-GHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKSLNCISYS-PLSKLLASGSSDRHI  324 (423)
T ss_pred             EEec-ccccceeeEEEcCC--CceEeecccceEEEEEeeccc-----ceeeeecCcceeEeecc-cccceeeecCCCCce
Confidence            5666 99999999999995  389999999999999999764     33333456788999999 578899999999999


Q ss_pred             EEEEcCCCc---eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457          240 SIWDWKDGQ---NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       240 ~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      ++||.+++.   ..++|.+            |...|.++.|+|.... .|++|+.|+++++||+++.+-     ++..+.
T Consensus       325 rl~DPR~~~gs~v~~s~~g------------H~nwVssvkwsp~~~~-~~~S~S~D~t~klWDvRS~k~-----plydI~  386 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIG------------HKNWVSSVKWSPTNEF-QLVSGSYDNTVKLWDVRSTKA-----PLYDIA  386 (423)
T ss_pred             eecCCCCCCCceeEEeeec------------chhhhhheecCCCCce-EEEEEecCCeEEEEEeccCCC-----cceeec
Confidence            999998763   3455666            7799999999998764 589999999999999998662     478886


Q ss_pred             cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                       +|.+.|.++         .|+ ++.+|+|||.|.+|++++-..
T Consensus       387 -~h~DKvl~v---------dW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  387 -GHNDKVLSV---------DWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             -cCCceEEEE---------ecc-CCceEEeccCcceEEEecccc
Confidence             999999999         443 234579999999999997543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.2e-36  Score=265.26  Aligned_cols=266  Identities=20%  Similarity=0.293  Sum_probs=230.4

Q ss_pred             CccccCCCCeEEEEecC--c--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeC-CCceeeeeecCCCCcEEEE
Q 016457           13 KSQSCDNVNSIKRFGLK--N--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSP-VTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~~~v~~i   86 (389)
                      ..++++.++.+++|+..  +  ..+.+.+ ...|++++|+|+++++++++.|++|+|||+ ..+..++++.+|...|+++
T Consensus       173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~  252 (456)
T KOG0266|consen  173 ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV  252 (456)
T ss_pred             eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence            46778899999999983  2  3445555 889999999999999999999999999999 5568999999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--eeeeeee
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEE  164 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~  164 (389)
                      +|+|.+  +++++|+.|++|+|||+++++++..+.+|...|++++|++++..+++++.|+.|++||+.++.  ++..+. 
T Consensus       253 ~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-  329 (456)
T KOG0266|consen  253 AFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-  329 (456)
T ss_pred             EecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-
Confidence            999999  799999999999999999999999999999999999999999999999889999999999998  456666 


Q ss_pred             cccC--CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc---eeeEEEecCCCcEEEEEecCCcE
Q 016457          165 SHVE--DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS---VGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       165 ~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      .+..  +++++.|+|++. ++++++.|+.+++||++.+    ........|...   +.+...+ ..+.++++++.|+.|
T Consensus       330 ~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLS-TGGKLIYSGSEDGSV  403 (456)
T ss_pred             CCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCC----cceeeecccCCcceeEeccccc-CCCCeEEEEeCCceE
Confidence            4444  599999999996 9999999999999999954    445555556553   3333344 678999999999999


Q ss_pred             EEEEcCCCceeEEeecccccccCCccCCC-CCceeeecccCCCCeEEEEEec--CCceEEEEEec
Q 016457          240 SIWDWKDGQNVASFENARSLASDSWTLDD-VDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVN  301 (389)
Q Consensus       240 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~  301 (389)
                      ++||+.++..+..+.+            | ...+..+.++|..+  ++++++  .|+.+++|...
T Consensus       404 ~~~~~~s~~~~~~l~~------------h~~~~~~~~~~~~~~~--~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  404 YVWDSSSGGILQRLEG------------HSKAAVSDLSSHPTEN--LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEeCCccchhhhhcC------------CCCCceeccccCCCcC--eeeecCcCCCceEEEecCC
Confidence            9999999888888887            5 58889999999988  778887  78999999754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-36  Score=264.70  Aligned_cols=288  Identities=15%  Similarity=0.240  Sum_probs=246.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|..++|+|....++++-..|.|++||..-+.++..|..|.++|..++|+|..  .+++||+.|-.|++|+..+.+++
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC--CeEEecCCccEEEEEecccceeh
Confidence            6788999999999999999999999999999999999999999999999999999  79999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      .++.+|-+.|..+.|++.-+.+++++.|.+|+||+..+++++..+. +|...|.|..|+|... +++++|-|.+|++||+
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDI  164 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccceEEEEee
Confidence            9999999999999999999999999999999999999999999999 9999999999999885 9999999999999999


Q ss_pred             CCCCCC------------------------Cc-cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--e
Q 016457          198 GGDIND------------------------DD-LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--V  250 (389)
Q Consensus       198 ~~~~~~------------------------~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~  250 (389)
                      ..-.+.                        .. ....+.+|...|+-++|+ |.-.++++|+.|..|++|.+...+.  +
T Consensus       165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEv  243 (1202)
T KOG0292|consen  165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEV  243 (1202)
T ss_pred             cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccccceee
Confidence            732110                        00 112345788999999999 5567999999999999999875432  2


Q ss_pred             EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCC
Q 016457          251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP  330 (389)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  330 (389)
                      -+..+            |...|.++.|+|..+  +|++.++|++|+|||+.....      ++.+... .+.-+.+    
T Consensus       244 Dtcrg------------H~nnVssvlfhp~q~--lIlSnsEDksirVwDm~kRt~------v~tfrre-ndRFW~l----  298 (1202)
T KOG0292|consen  244 DTCRG------------HYNNVSSVLFHPHQD--LILSNSEDKSIRVWDMTKRTS------VQTFRRE-NDRFWIL----  298 (1202)
T ss_pred             hhhhc------------ccCCcceEEecCccc--eeEecCCCccEEEEecccccc------eeeeecc-CCeEEEE----
Confidence            33333            889999999999888  899999999999999997665      6666533 3455666    


Q ss_pred             cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          331 SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       331 ~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                           +-+|..+++++| .|+-+.+|+++..
T Consensus       299 -----aahP~lNLfAAg-HDsGm~VFkleRE  323 (1202)
T KOG0292|consen  299 -----AAHPELNLFAAG-HDSGMIVFKLERE  323 (1202)
T ss_pred             -----EecCCcceeeee-cCCceEEEEEccc
Confidence                 556666665554 5777788888843

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-34  Score=224.81  Aligned_cols=292  Identities=18%  Similarity=0.230  Sum_probs=243.4

Q ss_pred             eeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec--CCeEEEE
Q 016457           33 QTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS--DGTIRAW  109 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~iw  109 (389)
                      +.+.. .+.|+++.|+++|..+++++.|.+++|||..+++.+.++..+.-.+..++|....  ..++.++.  |.+||.-
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--ceEEEccCCCCCceEEE
Confidence            34444 7889999999999999999999999999999999999998888889999998776  46666655  8899999


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      ++.+.+.++.|.+|...|++++.+|-++.+++++.|++|++||+|..++...+.   ...-...+|.|+|- ++|++...
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GL-ifA~~~~~  161 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGL-IFALANGS  161 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCc-EEEEecCC
Confidence            999999999999999999999999999999999999999999999887776665   23334679999994 88888877


Q ss_pred             CcEEEEecCCCCCCCccceeee---ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          190 GLICTFDTGGDINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      ..|++||+|.-..  .+...+.   ......+.+.|+ ++|++++.++..+.+++.|.-+|..+.++......       
T Consensus       162 ~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~-------  231 (311)
T KOG1446|consen  162 ELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA-------  231 (311)
T ss_pred             CeEEEEEecccCC--CCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC-------
Confidence            7999999996422  2222222   345678999999 89999999999999999999999999888875411       


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEE
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWT  346 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s  346 (389)
                        ..--.+.+|+||++  ++++|+.||+|.+|+++++..      +..+...+..++.++         .|+|.-.+++|
T Consensus       232 --~~~~~~a~ftPds~--Fvl~gs~dg~i~vw~~~tg~~------v~~~~~~~~~~~~~~---------~fnP~~~mf~s  292 (311)
T KOG1446|consen  232 --GNLPLSATFTPDSK--FVLSGSDDGTIHVWNLETGKK------VAVLRGPNGGPVSCV---------RFNPRYAMFVS  292 (311)
T ss_pred             --CCcceeEEECCCCc--EEEEecCCCcEEEEEcCCCcE------eeEecCCCCCCcccc---------ccCCceeeeee
Confidence              11226789999999  999999999999999999876      566663378888999         89999888888


Q ss_pred             ecCCCeEEEEeccCC
Q 016457          347 GGEDGRLCCWLSDDS  361 (389)
Q Consensus       347 ~~~dg~v~iW~~~~~  361 (389)
                      ++  ..+-+|-.+..
T Consensus       293 a~--s~l~fw~p~~~  305 (311)
T KOG1446|consen  293 AS--SNLVFWLPDED  305 (311)
T ss_pred             cC--ceEEEEecccc
Confidence            76  57889977643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-36  Score=227.55  Aligned_cols=264  Identities=17%  Similarity=0.246  Sum_probs=223.7

Q ss_pred             CCCeEEEEecC--ceeeeeec---CcceEEEeecCCC-CeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEEEeCC
Q 016457           19 NVNSIKRFGLK--NSIQTNFG---DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~---~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      ..|.+.+.+..  ..+.....   .+.++.++|++.. +.+++++.||+++|||... .+++..++.|...|.++.|++.
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence            45788888874  33444333   8999999999865 6788888899999999643 4688999999999999999987


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCCceeeeeeecccCCe
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      .. +.+++++.|++|++|+...++.+.++.+|...|...+|+|....+++ ++.|+.+++||++.......+. .|...+
T Consensus       116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Ei  193 (311)
T KOG0277|consen  116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEI  193 (311)
T ss_pred             cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-ecccee
Confidence            65 67888899999999999999999999999999999999998766555 5559999999999765555576 899999


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc-e
Q 016457          171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ-N  249 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~  249 (389)
                      .|+.|+.-++++++||+.|+.|+.||++.   ...++..+.+|+-.|..+.|+|....+|++++.|-+++|||...+. .
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            99999998888999999999999999994   4467888899999999999998888899999999999999988543 3


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      +.++..            |...+..+.|++.... ++++.+.|+.++||+-
T Consensus       271 ~e~~~~------------HtEFv~g~Dws~~~~~-~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 IETVDH------------HTEFVCGLDWSLFDPG-QVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhc------------cceEEeccccccccCc-eeeecccccceeeecc
Confidence            444443            7899999999997444 7899999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-37  Score=245.31  Aligned_cols=267  Identities=18%  Similarity=0.220  Sum_probs=225.0

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ...++..|++|++||.+  .+.+.+.| .+.|.|+.|..  +.|++|++|.+|++||+++|+++.++-+|.+.|..+.|+
T Consensus       209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~  286 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS  286 (499)
T ss_pred             hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence            45678899999999987  57788888 99999999954  599999999999999999999999999999999999998


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCe---EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                       ++   ++++++.|.++.+||+....   +.+.+.+|...|+.+.|+  ++++++++.|.+|++|++.+.+.+.++. +|
T Consensus       287 -ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gH  359 (499)
T KOG0281|consen  287 -NG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GH  359 (499)
T ss_pred             -CC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cc
Confidence             44   99999999999999998654   335677899999999995  6699999999999999999999999998 99


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ...|-|+.+.  + .++++|+.|.+|++||+..+    .+++.+.+|+.-|.++.|.   .+.+++|+.||+|++||+..
T Consensus       360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             cccceehhcc--C-eEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeec---CceeeeccccceEEEEeccc
Confidence            9999999886  4 39999999999999999965    6788889999999999996   35799999999999999987


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +...+.....--   ..-..+|.+.|..+.|..-    -|++++.|.+|.|||+..+..
T Consensus       430 aldpra~~~~~C---l~~lv~hsgRVFrLQFD~f----qIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  430 ALDPRAPASTLC---LRTLVEHSGRVFRLQFDEF----QIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ccCCcccccchH---HHhhhhccceeEEEeecce----EEEeccCCCeEEEEEcCCCCc
Confidence            643321110000   0001127789999999762    578999999999999987653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.8e-35  Score=235.49  Aligned_cols=265  Identities=15%  Similarity=0.239  Sum_probs=230.2

Q ss_pred             cccCCCCeEEEEecC-ceeeeeec-CcceEEEeecCCC---CeEEEEecCCeEEEEeCCCcee----eeeecCCCCcEEE
Q 016457           15 QSCDNVNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDW---SLMAVSLSTNVVKLYSPVTGQY----SGECKGHSSTVNQ   85 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~   85 (389)
                      -+++.||.+++|+.. +...++.| .++|.+++|.-.+   ..|++++.|.++++|.++.++.    +...+||...|-+
T Consensus       119 ltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s  198 (423)
T KOG0313|consen  119 LTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS  198 (423)
T ss_pred             EEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence            467899999999985 67888888 8999988875433   3599999999999999887643    3444699999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccC-------------------------CeEEEEEEcCCCCeEEEEEeCCCCeEE
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRS-------------------------FHEVWSVTAGSQEIFCFSFGGSTDYLL  140 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~  140 (389)
                      +...+++  ..+++|+.|.+|.||+..+                         +.++.++.+|..+|.++.|++ ...++
T Consensus       199 Vsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y  275 (423)
T KOG0313|consen  199 VSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY  275 (423)
T ss_pred             EEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence            9999999  7999999999999999321                         146778899999999999994 78899


Q ss_pred             EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          141 AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       141 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                      +++.|.+|+.||+.++..+.++.  ....++|+..+|... +|++|+.|..+++||.|++. ......++.+|...|.++
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             eecccceEEEEEeecccceeeee--cCcceeEeecccccc-eeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhhe
Confidence            99999999999999999999887  678899999999885 99999999999999999763 445567788999999999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      .|+|.+...|++++.|+++++||+++.+ ++..+.+            |.+.|.++.|+..+   +|++|+.|.+|+|+.
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~------------h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG------------HNDKVLSVDWNEGG---LIVSGGADNKLRIFK  416 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc------------CCceEEEEeccCCc---eEEeccCcceEEEec
Confidence            9998888899999999999999999887 8888887            77999999999743   789999999999996


Q ss_pred             ec
Q 016457          300 VN  301 (389)
Q Consensus       300 ~~  301 (389)
                      -.
T Consensus       417 ~~  418 (423)
T KOG0313|consen  417 GS  418 (423)
T ss_pred             cc
Confidence            54

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-35  Score=253.35  Aligned_cols=313  Identities=19%  Similarity=0.238  Sum_probs=261.6

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      +-.|-+-.||.|++|+..  ....++.| ..+|+++.|+..|..|++|+.|+.|.+||+-...-+..+.||.+.|+..-|
T Consensus        78 l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F  157 (888)
T KOG0306|consen   78 LLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF  157 (888)
T ss_pred             ceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence            345778889999999997  67778888 999999999999999999999999999999877778889999999998888


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCC------------------------------------------------------
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSF------------------------------------------------------  114 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------------------------------------  114 (389)
                      ....  .++++.+.|+.|++||+.+.                                                      
T Consensus       158 ~~~~--~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~  235 (888)
T KOG0306|consen  158 LNGD--SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKL  235 (888)
T ss_pred             cCCC--eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeec
Confidence            8755  68888999999999988754                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 016457          115 --------------------------------------------------------------------------------  114 (389)
Q Consensus       115 --------------------------------------------------------------------------------  114 (389)
                                                                                                      
T Consensus       236 ~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~  315 (888)
T KOG0306|consen  236 RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLE  315 (888)
T ss_pred             cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------e-----------------------------EEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457          115 -------------------H-----------------------------EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus       115 -------------------~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                                         .                             ....+.+|...|.+++++ +++.++.++..+
T Consensus       316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS-~d~~~~~Sga~~  394 (888)
T KOG0306|consen  316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS-SDSILLASGAGE  394 (888)
T ss_pred             heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee-cCceeeeecCCC
Confidence                               0                             002234567788899998 666677777789


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      .|++|+..+.++++++.   ...+.+..|-|.+. ++++|...|.+.+||+.+.    ..+..+..|.+.|.+++.+ |+
T Consensus       395 SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~-pD  465 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTIT---CGYILASKFVPGDR-YIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLS-PD  465 (888)
T ss_pred             cEEEEEccCcceeEEec---cccEEEEEecCCCc-eEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeec-CC
Confidence            99999999999999997   23789999999885 9999999999999999954    5567777899999999999 78


Q ss_pred             CcEEEEEecCCcEEEEEcCC-----CceeE--EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          227 NKHLWCLTHIETLSIWDWKD-----GQNVA--SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      +..+++++.|.+|++||..-     +...+  .+...+.       .+-++.|.++.+||||+  ||+.+--|.+++||-
T Consensus       466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt-------Lel~ddvL~v~~Spdgk--~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT-------LELEDDVLCVSVSPDGK--LLAVSLLDNTVKVYF  536 (888)
T ss_pred             CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE-------EeccccEEEEEEcCCCc--EEEEEeccCeEEEEE
Confidence            88999999999999999641     11111  1111111       11457899999999999  999999999999999


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +++.+.      ...++ ||.-||.++         ..|||++.++|||.|.+|++|-++-+
T Consensus       537 lDtlKF------flsLY-GHkLPV~sm---------DIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  537 LDTLKF------FLSLY-GHKLPVLSM---------DISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             ecceee------eeeec-ccccceeEE---------eccCCcCeEEeccCCCceEEeccccc
Confidence            999876      56777 999999999         99999999999999999999999865

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=252.81  Aligned_cols=280  Identities=18%  Similarity=0.232  Sum_probs=245.5

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  120 (389)
                      .+=+.|+. .+.||+|. ...|++|+..+++.......+...|+++.|+++|  .+|++|..+|.|.|||..+.+.+..+
T Consensus       180 ~nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G--~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG--SHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             hhHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCC--CEEEEeecCCeEEEEehhhccccccc
Confidence            33466774 45788876 5689999999998766666568999999999999  79999999999999999999999999


Q ss_pred             Ec-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee-eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          121 TA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       121 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .+ |...|-+++|+  +..+.+++.++.|..+|++..+.... +. +|...|..+.|++++. ++++|+.|+.+.|||..
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCC
Confidence            99 89999999996  66777777899999999998876655 65 8999999999999995 99999999999999996


Q ss_pred             CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          199 GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                          ...+...+..|...|.+++|+|....+||+|+.  |+.|++||..+++.+..+..             ...|.++.
T Consensus       332 ----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~  394 (484)
T KOG0305|consen  332 ----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI  394 (484)
T ss_pred             ----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-------------CCceeeEE
Confidence                446788889999999999999888889998764  88999999999999888774             37899999


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      |++..+++...-|..+..|.||+..+.+.      +..+. +|...|..+         ++||||..+++|+.|.++++|
T Consensus       395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~------~~~l~-gH~~RVl~l---------a~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  395 WSKKYKELLSTHGYSENQITLWKYPSMKL------VAELL-GHTSRVLYL---------ALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             EcCCCCEEEEecCCCCCcEEEEeccccce------eeeec-CCcceeEEE---------EECCCCCEEEEecccCcEEec
Confidence            99999887666777889999999998765      56665 999999999         999999999999999999999


Q ss_pred             eccCC
Q 016457          357 LSDDS  361 (389)
Q Consensus       357 ~~~~~  361 (389)
                      ++-+.
T Consensus       459 ~~f~~  463 (484)
T KOG0305|consen  459 NLFDE  463 (484)
T ss_pred             cccCC
Confidence            99875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-35  Score=254.48  Aligned_cols=281  Identities=16%  Similarity=0.195  Sum_probs=252.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|.+++++.+...+++|+ .+.|+||+..+.+++.++..  +.+.+..|.|.+  .++++|...|.+.+||+.+...+
T Consensus       373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd--~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  373 RSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGD--RYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             hhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCC--ceEEEeccCCceEEEEeehhhhh
Confidence            78899999999988888776 78899999999999999874  489999999988  79999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-----Cc--ee------eeeeecccCCeeEEEEecCCCCeEE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-----KK--QV------ACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~--~~------~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      .+++.|.+.|++++.+|++..+++++.|.+|++||..-     +.  .+      .++.  -...|.|+.++|+++ +|+
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~ddvL~v~~Spdgk-~La  524 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDDVLCVSVSPDGK-LLA  524 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe--ccccEEEEEEcCCCc-EEE
Confidence            99999999999999999999999999999999999752     11  11      2222  457899999999997 999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      ++--|++|++|-+.+    .+....+.+|.-||.++..+ ++++++++|+.|..|++|-+.-|.|-+++..         
T Consensus       525 VsLLdnTVkVyflDt----lKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fA---------  590 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDT----LKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---------  590 (888)
T ss_pred             EEeccCeEEEEEecc----eeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhhhhc---------
Confidence            999999999999994    36677889999999999999 8889999999999999999999999999987         


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                         |.+.|.++.|-|...  ++++++.|+.|+-||-...+.      ++.+. +|...|+++         +.+|+|.|+
T Consensus       591 ---HdDSvm~V~F~P~~~--~FFt~gKD~kvKqWDg~kFe~------iq~L~-~H~~ev~cL---------av~~~G~~v  649 (888)
T KOG0306|consen  591 ---HDDSVMSVQFLPKTH--LFFTCGKDGKVKQWDGEKFEE------IQKLD-GHHSEVWCL---------AVSPNGSFV  649 (888)
T ss_pred             ---ccCceeEEEEcccce--eEEEecCcceEEeechhhhhh------heeec-cchheeeee---------EEcCCCCeE
Confidence               779999999999776  778999999999999988776      67786 999999999         999999999


Q ss_pred             EEecCCCeEEEEeccCC
Q 016457          345 WTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~~  361 (389)
                      +|+|.|.+||+|.-.+.
T Consensus       650 vs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  650 VSSSHDKSIRLWERTDE  666 (888)
T ss_pred             EeccCCceeEeeeccCc
Confidence            99999999999998874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=229.62  Aligned_cols=268  Identities=16%  Similarity=0.170  Sum_probs=231.3

Q ss_pred             CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      ..+-.+|++.|..-.+|++.  .....+.+ ++.|+++.|+.||.+||+|..+|.|+||...++.....+...-+.|.-+
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl  154 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL  154 (399)
T ss_pred             CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence            55667899999999999986  45566666 9999999999999999999999999999999998888887677788889


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-  165 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-  165 (389)
                      .|+|.+  ..|+.|+.||.+-.|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++||+.+++++..+... 
T Consensus       155 ~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e  232 (399)
T KOG0296|consen  155 KWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE  232 (399)
T ss_pred             Eecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence            999988  79999999999999999998889999999999999999999999999999999999999999877665410 


Q ss_pred             -------------------------------------------------ccCCeeEEE---EecCCCCeEEEEeCCCcEE
Q 016457          166 -------------------------------------------------HVEDVTQVH---FVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       166 -------------------------------------------------~~~~v~~~~---~~~~~~~~l~~~~~d~~i~  193 (389)
                                                                       +...+.|+.   ++..-+ +.|+|+-||+|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~  311 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIA  311 (399)
T ss_pred             cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhcccccceEE
Confidence                                                             011111222   222233 788899999999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      |||+...     .++....|+.+|..+.|. + ..+|++++.+|.|+.||.++|+++..+.+            |...|.
T Consensus       312 iyD~a~~-----~~R~~c~he~~V~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G------------H~~~Il  372 (399)
T KOG0296|consen  312 IYDLAAS-----TLRHICEHEDGVTKLKWL-N-TDYLLTACANGKVRQWDARTGQLKFTYTG------------HQMGIL  372 (399)
T ss_pred             EEecccc-----hhheeccCCCceEEEEEc-C-cchheeeccCceEEeeeccccceEEEEec------------Cchhee
Confidence            9999853     367777899999999998 4 57999999999999999999999999998            779999


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEec
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +++++|+.+  +++++|.|+..+||++.
T Consensus       373 ~f~ls~~~~--~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  373 DFALSPQKR--LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcCCCc--EEEEecCCCeEEEEecC
Confidence            999999998  88999999999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.3e-36  Score=248.89  Aligned_cols=269  Identities=16%  Similarity=0.188  Sum_probs=235.6

Q ss_pred             CccccCCCCeEEEEec---Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           13 KSQSCDNVNSIKRFGL---KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...+++.|+.|++|++   +.+++++.+ ..+|.+++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|
T Consensus       229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf  307 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKF  307 (503)
T ss_pred             EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeec
Confidence            3568999999999997   468999999 9999999999999999999999999999999999999987 4567899999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +|++. +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+.+.++++++.|+.++||+.+...++..+...+.-
T Consensus       308 ~pd~~-n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h  386 (503)
T KOG0282|consen  308 HPDNQ-NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH  386 (503)
T ss_pred             CCCCC-cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhc
Confidence            99984 79999999999999999999999999999999999999999999999999999999999988877666544556


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC--CceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG--TSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .+.|+..+|+++ ++++-+.|+.|.+|.+.... .......+.+|.  +.-..+.|+ +++.+|++|..||.+.+||.++
T Consensus       387 smP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  387 TMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             cCcceecCCCCC-eehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeechh
Confidence            688999999996 99999999999999977321 122233344553  445678899 8899999999999999999999


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      -+.+..+..            |...+..+.|+|.... -+|+++.||.|++|+
T Consensus       464 ~kl~~~lka------------h~~~ci~v~wHP~e~S-kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  464 TKLVSKLKA------------HDQPCIGVDWHPVEPS-KVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhcccc------------CCcceEEEEecCCCcc-eeEecccCceeEecC
Confidence            999998887            7799999999998654 579999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.8e-34  Score=240.71  Aligned_cols=265  Identities=23%  Similarity=0.381  Sum_probs=230.4

Q ss_pred             CCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...++++.++.|++|+...  ....+.. ...+..+.|+|+++.|++++.+|.|++|++.+++.+..+..|...|.++.|
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~  101 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF  101 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE
Confidence            4566778899999999863  4445555 778889999999999999999999999999988888888899999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      ++++  .++++++.|+.|.+||+.+++....+..|...+.+++|+|++..+++++.++.|++||+++++.+..+. .|..
T Consensus       102 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~  178 (289)
T cd00200         102 SPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTG  178 (289)
T ss_pred             cCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCcc
Confidence            9987  688888889999999999999999999888899999999886666666669999999999988888888 7888


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      .+.++.|+|++. .+++++.++.|++||++++    ..+..+..+...+.++.|+ +++.++++++.++.|++|++.+++
T Consensus       179 ~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         179 EVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             ccceEEECCCcC-EEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEc-CCCcEEEEEcCCCcEEEEEcCCce
Confidence            999999999995 8888888999999999853    3344444677899999999 557788888889999999999888


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ....+..            |...+.+++|+++++  +|++++.||.|++|+
T Consensus       253 ~~~~~~~------------~~~~i~~~~~~~~~~--~l~~~~~d~~i~iw~  289 (289)
T cd00200         253 CVQTLSG------------HTNSVTSLAWSPDGK--RLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEccc------------cCCcEEEEEECCCCC--EEEEecCCCeEEecC
Confidence            8888775            668899999999988  889999999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.2e-35  Score=229.48  Aligned_cols=289  Identities=18%  Similarity=0.223  Sum_probs=234.3

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC------------c------eeeeeecCCCCcEEEEEEeCCCCCCEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------------G------QYSGECKGHSSTVNQISFSGPSTPHVLHS   99 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s   99 (389)
                      +.++.+.+|+|||.++|+|+.|..|+|.|++.            |      -.+.++..|.+.|+++.|+|..  ..|++
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre--~ILiS  189 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE--TILIS  189 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh--heEEe
Confidence            88999999999999999999999999999861            1      2355677899999999999998  79999


Q ss_pred             EecCCeEEEEEccCCeEE---EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEE
Q 016457          100 CSSDGTIRAWDTRSFHEV---WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVH  174 (389)
Q Consensus       100 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~  174 (389)
                      |+.|++|++||+......   +.|+. ..+|.++.|+|.|.+++++..-..+++||+++.++...-.  ..|.+.|+++.
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~  268 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR  268 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence            999999999998754332   23332 5799999999999999999999999999999987754432  36889999999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-cc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS  252 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  252 (389)
                      +++.+. +.++++.||.|++||--++    .++..+. .| +..|.+..|. .+++++++++.|..+++|.+.+++++..
T Consensus       269 Ys~t~~-lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  269 YSSTGS-LYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ecCCcc-EEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeecCCceEEE
Confidence            999995 9999999999999998744    4555543 24 3578888898 8999999999999999999999999999


Q ss_pred             eecccccccCCccCCCCCceeeecccCCCCeEEEEEecC-CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCc
Q 016457          253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPS  331 (389)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  331 (389)
                      +.+.....       ....-+...|+...+  |++.-.+ .+.+.-||.++...      +..+..+|.+.++.+     
T Consensus       343 YtGAg~tg-------rq~~rtqAvFNhtEd--yVl~pDEas~slcsWdaRtadr------~~l~slgHn~a~R~i-----  402 (430)
T KOG0640|consen  343 YTGAGTTG-------RQKHRTQAVFNHTED--YVLFPDEASNSLCSWDARTADR------VALLSLGHNGAVRWI-----  402 (430)
T ss_pred             EecCCccc-------chhhhhhhhhcCccc--eEEccccccCceeeccccchhh------hhhcccCCCCCceEE-----
Confidence            98742111       112234456777666  6555433 46799999998765      445556999999999     


Q ss_pred             ccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          332 VQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       332 ~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                          .-||.+.-+++||.|-..|+|--.
T Consensus       403 ----~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  403 ----VHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ----EeCCCCCceeeecccceeeeeeec
Confidence                777888888999999999999643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-33  Score=268.93  Aligned_cols=278  Identities=18%  Similarity=0.246  Sum_probs=225.7

Q ss_pred             CccccCCCCeEEEEecCc----------eeeeeecCcceEEEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecCCCC
Q 016457           13 KSQSCDNVNSIKRFGLKN----------SIQTNFGDDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS   81 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~----------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~   81 (389)
                      ..++++.|+.|++|+...          +...+.+...|.+++|++. +.+|++++.||+|++||+.+++.+..+.+|.+
T Consensus       497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~  576 (793)
T PLN00181        497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK  576 (793)
T ss_pred             EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC
Confidence            477899999999999742          1222333677899999874 68999999999999999999999999999999


Q ss_pred             cEEEEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCc-e
Q 016457           82 TVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKK-Q  158 (389)
Q Consensus        82 ~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~  158 (389)
                      .|++++|+| ++  .+|++|+.|++|++||++++..+..+..+ ..+.++.|++ ++..+++++.||.|++||+++.+ .
T Consensus       577 ~V~~l~~~p~~~--~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~  653 (793)
T PLN00181        577 RVWSIDYSSADP--TLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP  653 (793)
T ss_pred             CEEEEEEcCCCC--CEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            999999997 55  69999999999999999999998888865 6899999964 57778888889999999998765 4


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CCccceeeeccCCceeeEEEecCCCcEEEEEecC
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (389)
                      +..+. +|...|.++.|. ++ ..|++++.|+.|++||++....  ....+..+.+|...+..++|+ +++.+|++|+.|
T Consensus       654 ~~~~~-~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s-~~~~~lasgs~D  729 (793)
T PLN00181        654 LCTMI-GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS-VSDGYIATGSET  729 (793)
T ss_pred             ceEec-CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc-CCCCEEEEEeCC
Confidence            56666 899999999997 45 4899999999999999984321  124566777888899999999 677899999999


Q ss_pred             CcEEEEEcCCCceeEEeecc--cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          237 ETLSIWDWKDGQNVASFENA--RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       237 ~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      +.|++|+......+..+...  ...... ....+...|.+++|+|++.  +|++|+.||.|+||++
T Consensus       730 ~~v~iw~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~V~~v~ws~~~~--~lva~~~dG~I~i~~~  792 (793)
T PLN00181        730 NEVFVYHKAFPMPVLSYKFKTIDPVSGL-EVDDASQFISSVCWRGQSS--TLVAANSTGNIKILEM  792 (793)
T ss_pred             CEEEEEECCCCCceEEEecccCCccccc-ccCCCCcEEEEEEEcCCCC--eEEEecCCCcEEEEec
Confidence            99999998776555443211  100000 0112557799999999998  8899999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-34  Score=254.00  Aligned_cols=272  Identities=18%  Similarity=0.196  Sum_probs=236.8

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      |-.-++-..|.|++||..  .++..+.. +++|..++|+|++.++++|++|-.|++|+..+.+++.++.||-+-|..+.|
T Consensus        22 PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~F  101 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFF  101 (1202)
T ss_pred             CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeec
Confidence            334456678999999974  67777777 999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-----------
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-----------  157 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------  157 (389)
                      ++.-  ..|+|++.|.+|+||+..+++++..+.+|...|-|..|+|....+++++-|.+|++||+..-+           
T Consensus       102 Hhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~  179 (1202)
T KOG0292|consen  102 HHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLED  179 (1202)
T ss_pred             cCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchh
Confidence            9987  799999999999999999999999999999999999999999999999999999999985210           


Q ss_pred             -----------------eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          158 -----------------QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       158 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                                       .++.+.++|...|+-++|+|.-+ +|++|+.|+.|++|.+...  ....+....+|...|.++
T Consensus       180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssv  256 (1202)
T KOG0292|consen  180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSV  256 (1202)
T ss_pred             hhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc--cceeehhhhcccCCcceE
Confidence                             12222248999999999999998 9999999999999999832  223456677899999999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      -|+ +..+++++.+.|++|++||+...+.+++|..            ..+..+.++.+|..+  ++++| .|+-+.+|.+
T Consensus       257 lfh-p~q~lIlSnsEDksirVwDm~kRt~v~tfrr------------endRFW~laahP~lN--LfAAg-HDsGm~VFkl  320 (1202)
T KOG0292|consen  257 LFH-PHQDLILSNSEDKSIRVWDMTKRTSVQTFRR------------ENDRFWILAAHPELN--LFAAG-HDSGMIVFKL  320 (1202)
T ss_pred             Eec-CccceeEecCCCccEEEEecccccceeeeec------------cCCeEEEEEecCCcc--eeeee-cCCceEEEEE
Confidence            999 6778999999999999999999999999975            347899999999987  55555 7777889988


Q ss_pred             ccCC
Q 016457          301 NYGG  304 (389)
Q Consensus       301 ~~~~  304 (389)
                      +..+
T Consensus       321 eREr  324 (1202)
T KOG0292|consen  321 ERER  324 (1202)
T ss_pred             cccC
Confidence            7543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.9e-34  Score=218.76  Aligned_cols=284  Identities=14%  Similarity=0.133  Sum_probs=245.6

Q ss_pred             eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee--ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE--CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      +++ ...|.+++|+.+|..|++|+.|+++.+|+++..+....  .++|.+.|-.++|.|... +++++++.|.+|++||+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEEEe
Confidence            344 67899999999999999999999999999987755543  468999999999999875 89999999999999999


Q ss_pred             cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      +++++...+... ..-.-+.|+|+++++++++.|..|.+.|.++.+.+...+  ....+..+.|+.++ ++++.....|.
T Consensus        95 r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~n-d~Fflt~GlG~  170 (313)
T KOG1407|consen   95 RSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSN-DLFFLTNGLGC  170 (313)
T ss_pred             ccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCC-CEEEEecCCce
Confidence            999999988875 444568899999999999999999999999998887775  56778899999766 47777777899


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      |.|....    ..+++..+..|.....++.|+ |+|+++++|+.|-.+.+||+...-+++.+..            +.-+
T Consensus       171 v~ILsyp----sLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isR------------ldwp  233 (313)
T KOG1407|consen  171 VEILSYP----SLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISR------------LDWP  233 (313)
T ss_pred             EEEEecc----ccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeecc------------ccCc
Confidence            9999887    457888899999999999999 8899999999999999999999888888886            5589


Q ss_pred             eeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC-
Q 016457          272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED-  350 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d-  350 (389)
                      |..+.|+.+|+  +||+|++|-.|-|=++++|..      +.+++  +.++...|         +|+|...+||-+++| 
T Consensus       234 VRTlSFS~dg~--~lASaSEDh~IDIA~vetGd~------~~eI~--~~~~t~tV---------AWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  234 VRTLSFSHDGR--MLASASEDHFIDIAEVETGDR------VWEIP--CEGPTFTV---------AWHPKRPLLAYACDDK  294 (313)
T ss_pred             eEEEEeccCcc--eeeccCccceEEeEecccCCe------EEEee--ccCCceeE---------EecCCCceeeEEecCC
Confidence            99999999999  999999999999999999876      66665  78888899         888888888877644 


Q ss_pred             --------CeEEEEecc
Q 016457          351 --------GRLCCWLSD  359 (389)
Q Consensus       351 --------g~v~iW~~~  359 (389)
                              |.|+++-+.
T Consensus       295 ~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  295 DGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CCccccccceeEEecCC
Confidence                    566666543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=8.7e-36  Score=240.80  Aligned_cols=282  Identities=16%  Similarity=0.240  Sum_probs=241.3

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..++|+++.|.+++  ..+++++.|+.+++|++.+.+
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~--~~~iAas~d~~~r~Wnvd~~r  252 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN--KHVIAASNDKNLRLWNVDSLR  252 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC--ceEEeecCCCceeeeeccchh
Confidence            7889999999998899999999999999987665  677888888999999999998  799999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEE
Q 016457          116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF  195 (389)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~  195 (389)
                      ...++.+|.+.|+++.|......+++++.|.+|++||+....+..++.  ..+.+..|..++   ..+++|..|+.|++|
T Consensus       253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~---~~~~SgH~DkkvRfw  327 (459)
T KOG0288|consen  253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI---SDVISGHFDKKVRFW  327 (459)
T ss_pred             hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc---eeeeecccccceEEE
Confidence            999999999999999998666668888889999999999988888776  456677777763   489999999999999


Q ss_pred             ecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457          196 DTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       196 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      |.++.    .+..... ..+.|+++..+ .++..|++++.|.++.+.|+++.+..+.|......        .....+.+
T Consensus       328 D~Rs~----~~~~sv~-~gg~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--------~asDwtrv  393 (459)
T KOG0288|consen  328 DIRSA----DKTRSVP-LGGRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--------CASDWTRV  393 (459)
T ss_pred             eccCC----ceeeEee-cCcceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccc--------ccccccee
Confidence            99954    3344444 44599999999 78888999999999999999999888887643211        22447889


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-eeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      .|||++.  |+++|+.||.|+||++.++++      ...+...+.. .|+++         +|+|.|.+|++++.++.++
T Consensus       394 vfSpd~~--YvaAGS~dgsv~iW~v~tgKl------E~~l~~s~s~~aI~s~---------~W~~sG~~Llsadk~~~v~  456 (459)
T KOG0288|consen  394 VFSPDGS--YVAAGSADGSVYIWSVFTGKL------EKVLSLSTSNAAITSL---------SWNPSGSGLLSADKQKAVT  456 (459)
T ss_pred             EECCCCc--eeeeccCCCcEEEEEccCceE------EEEeccCCCCcceEEE---------EEcCCCchhhcccCCcceE
Confidence            9999999  999999999999999999887      4555544444 68888         9999999999999999999


Q ss_pred             EEe
Q 016457          355 CWL  357 (389)
Q Consensus       355 iW~  357 (389)
                      +|.
T Consensus       457 lW~  459 (459)
T KOG0288|consen  457 LWT  459 (459)
T ss_pred             ecC
Confidence            994

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-35  Score=255.98  Aligned_cols=246  Identities=17%  Similarity=0.313  Sum_probs=202.9

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--------------------------------c---------------
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--------------------------------G---------------   70 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--------------------------------~---------------   70 (389)
                      .++|.+|.|++||++||+|+.|+.|+||.+..                                .               
T Consensus       267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            88999999999999999999999999998644                                0               


Q ss_pred             -------------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-
Q 016457           71 -------------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-  136 (389)
Q Consensus        71 -------------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  136 (389)
                                   +++..|.||.+.|.+|.|+.++   +|++++.|.+|++|++...++++.|. |...|+|++|+|.+ 
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence                         1123457899999999999776   99999999999999999999999988 78999999999954 


Q ss_pred             CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee----ec
Q 016457          137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV----IN  212 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~  212 (389)
                      +++++|+-||.|+||++...+.+.-..  -..-|++++|.|+|+ ..++|+.+|.+++|+....+.........    ..
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            566667779999999998777665554  458899999999996 99999999999999998542111110000    11


Q ss_pred             cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA  292 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d  292 (389)
                      ....|+.+.|.|.+...+++.+.|..|+|||.++.+.+..|.+.+          ....-....|+.||+  +|+++++|
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----------n~~SQ~~Asfs~Dgk--~IVs~seD  567 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----------NTSSQISASFSSDGK--HIVSASED  567 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc----------cCCcceeeeEccCCC--EEEEeecC
Confidence            123799999997777789999999999999999999999998765          334456778999999  99999999


Q ss_pred             ceEEEEEecc
Q 016457          293 GTVGYFPVNY  302 (389)
Q Consensus       293 g~i~i~~~~~  302 (389)
                      ..|++|+...
T Consensus       568 s~VYiW~~~~  577 (712)
T KOG0283|consen  568 SWVYIWKNDS  577 (712)
T ss_pred             ceEEEEeCCC
Confidence            9999999743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=6.8e-34  Score=231.32  Aligned_cols=286  Identities=15%  Similarity=0.165  Sum_probs=250.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...+.++...|....+++|+.|..+.++|...++.+..+.||...|+.+.|+|+.  ..+++++.|..|+||........
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccCc
Confidence            5678888888887899999999999999999999999999999999999999998  79999999999999999888888


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      .....|..+|+.+..+|.+.++++++.|+...+.|++++..+..... ...-.+++.+|+||| .+|.+|..|+.|+|||
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWD  375 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEE
Confidence            88889999999999999999999999999999999999998877762 123458999999999 5999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      +.+.    .....+.+|.++|..++|+ .+|-+|++++.|+.|++||++..+..+++...           ....+.++.
T Consensus       376 lks~----~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~-----------~~~~v~s~~  439 (506)
T KOG0289|consen  376 LKSQ----TNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLD-----------EKKEVNSLS  439 (506)
T ss_pred             cCCc----cccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeecc-----------ccccceeEE
Confidence            9943    4677888999999999999 89999999999999999999988877777642           224689999


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      |.+.|.  ||+.++.|=.|++++-.+.+.    ..+..+. .|.+..+++         .|....++++++|.|..++++
T Consensus       440 fD~SGt--~L~~~g~~l~Vy~~~k~~k~W----~~~~~~~-~~sg~st~v---------~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  440 FDQSGT--YLGIAGSDLQVYICKKKTKSW----TEIKELA-DHSGLSTGV---------RFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EcCCCC--eEEeecceeEEEEEecccccc----eeeehhh-hccccccee---------eecccceEEeeccchhheEEe
Confidence            999999  888888887777776555442    3345554 677888888         899999999999999999998


Q ss_pred             ec
Q 016457          357 LS  358 (389)
Q Consensus       357 ~~  358 (389)
                      .+
T Consensus       504 a~  505 (506)
T KOG0289|consen  504 AL  505 (506)
T ss_pred             ec
Confidence            65

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=250.65  Aligned_cols=279  Identities=18%  Similarity=0.247  Sum_probs=240.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee-ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...+.+..|.  ..++++++.+.+|++|+..++..+.. +.+|.+.|.++++..-+  .+|++|+.|.++++||..++++
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~--~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG--DKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC--CEEEEEecCCcEEeEecCCCcE
Confidence            6778888888  45899999999999999999988888 99999999999998644  7999999999999999999999


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      ..++.+|.+.|.++...  ...+++++.|.+|++|++.++..+..+. +|..+|.++..+  + .++++|+.|++|++||
T Consensus       284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--E-PLLVSGSYDGTVKVWD  357 (537)
T ss_pred             EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--C-CEEEEEecCceEEEEE
Confidence            99999999999999974  5566667789999999999999999998 799999999998  4 4999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeee
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      ..+    .+++..+.+|...|.++.+. .. ..+++|+.|++|++||+++. +++.++.+            |...+..+
T Consensus       358 ~~~----~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~------------h~~~v~~l  419 (537)
T KOG0274|consen  358 PRT----GKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG------------HTSLVSSL  419 (537)
T ss_pred             hhh----ceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCchhhhhhhhcC------------Cccccccc
Confidence            994    47889999999999999886 32 78999999999999999999 89999987            55666555


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEE
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCC  355 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~i  355 (389)
                      .+.  ++  +|++++.|+.|++||..+++.      +..+...|...|..+         ++.  ...+++++.||.+++
T Consensus       420 ~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~------~~~~~~~~~~~v~~l---------~~~--~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  420 LLR--DN--FLVSSSADGTIKLWDAEEGEC------LRTLEGRHVGGVSAL---------ALG--KEEILCSSDDGSVKL  478 (537)
T ss_pred             ccc--cc--eeEeccccccEEEeecccCce------eeeeccCCcccEEEe---------ecC--cceEEEEecCCeeEE
Confidence            554  35  889999999999999999887      677762266788888         333  345688889999999


Q ss_pred             EeccCCcccc
Q 016457          356 WLSDDSSEIN  365 (389)
Q Consensus       356 W~~~~~~~~~  365 (389)
                      ||+.......
T Consensus       479 ~dl~~~~~~~  488 (537)
T KOG0274|consen  479 WDLRSGTLIR  488 (537)
T ss_pred             EecccCchhh
Confidence            9999875444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-34  Score=252.36  Aligned_cols=258  Identities=16%  Similarity=0.198  Sum_probs=208.9

Q ss_pred             eeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC--------------------------------C------
Q 016457           74 GECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--------------------------------F------  114 (389)
Q Consensus        74 ~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------  114 (389)
                      +.+. +|.+.|+++.|+++|  +|||+||.|+.|+||.+..                                .      
T Consensus       260 Qe~~~ah~gaIw~mKFS~DG--KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDG--KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eccccccCCcEEEEEeCCCC--ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            3455 799999999999999  8999999999999998765                                0      


Q ss_pred             ----------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeE
Q 016457          115 ----------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ  172 (389)
Q Consensus       115 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  172 (389)
                                            ++++.|.+|...|..+.|+ .+++||+++.|.+|++|++...+++..|.  |...|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEE
Confidence                                  4556678899999999999 78899999999999999999999999997  9999999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS  252 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  252 (389)
                      ++|+|.+.++|++|+-|+.|+||++..     ..+........-|++++|. |+|+..++|+.+|.+++|+....+....
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d-----~~Vv~W~Dl~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISD-----KKVVDWNDLRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCc-----CeeEeehhhhhhheeEEec-cCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            999999888999999999999999983     3355566667899999999 6799999999999999999998776655


Q ss_pred             eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcc
Q 016457          253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSV  332 (389)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  332 (389)
                      +.-.....   ....|. .|+.+.|.|.... -|+..+.|..|+|||.....+      +..+. |+...-.       +
T Consensus       489 ~~I~~~~~---Kk~~~~-rITG~Q~~p~~~~-~vLVTSnDSrIRI~d~~~~~l------v~KfK-G~~n~~S-------Q  549 (712)
T KOG0283|consen  489 FHIRLHNK---KKKQGK-RITGLQFFPGDPD-EVLVTSNDSRIRIYDGRDKDL------VHKFK-GFRNTSS-------Q  549 (712)
T ss_pred             eeEeeccC---ccccCc-eeeeeEecCCCCC-eEEEecCCCceEEEeccchhh------hhhhc-ccccCCc-------c
Confidence            44221000   011133 7999999986543 245566899999999977665      55555 3331111       1


Q ss_pred             cCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          333 QGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       333 ~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.+.|+.||++|+++++|..|++|+.+..
T Consensus       550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  550 ISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             eeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            22379999999999999999999998655

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-34  Score=235.61  Aligned_cols=297  Identities=17%  Similarity=0.206  Sum_probs=242.1

Q ss_pred             eEEEEecCceeeeeecCcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE
Q 016457           22 SIKRFGLKNSIQTNFGDDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        22 ~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~  100 (389)
                      .++.|+-.+........+.|.+++|+|... -+|+.+ .-.+.||+..+....+.+......|.++.|..||  .+|+.|
T Consensus        10 e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG--~LlaaG   86 (487)
T KOG0310|consen   10 EIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG--RLLAAG   86 (487)
T ss_pred             cchhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCC--eEEEcc
Confidence            355676544444444478999999999653 345444 4679999998888888787788999999999999  799999


Q ss_pred             ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC
Q 016457          101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  179 (389)
                      +..|.|+|||..+...++.++.|..++..+.|+|.++.+++.++ |+.+++||+.+......+. +|++.|.|.+|+|..
T Consensus        87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~  165 (487)
T KOG0310|consen   87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPAN  165 (487)
T ss_pred             CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCC
Confidence            99999999998777788899999999999999999988887766 7889999999888755777 999999999999998


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce-eEEeecccc
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN-VASFENARS  258 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~  258 (389)
                      +.++++|+.||.|++||+++.    ........|+.+|..+.+. +.+..+++++. +.+++||+.+|.. +.....   
T Consensus       166 ~hivvtGsYDg~vrl~DtR~~----~~~v~elnhg~pVe~vl~l-psgs~iasAgG-n~vkVWDl~~G~qll~~~~~---  236 (487)
T KOG0310|consen  166 DHIVVTGSYDGKVRLWDTRSL----TSRVVELNHGCPVESVLAL-PSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN---  236 (487)
T ss_pred             CeEEEecCCCceEEEEEeccC----CceeEEecCCCceeeEEEc-CCCCEEEEcCC-CeEEEEEecCCceehhhhhc---
Confidence            789999999999999999953    2344456799999999999 66677777655 5899999986644 434433   


Q ss_pred             cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCC
Q 016457          259 LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ  338 (389)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s  338 (389)
                               |...|+++++..++.  -|++|+-|+.+++||+.+.+.      +..+  .-.++|.++         +.+
T Consensus       237 ---------H~KtVTcL~l~s~~~--rLlS~sLD~~VKVfd~t~~Kv------v~s~--~~~~pvLsi---------avs  288 (487)
T KOG0310|consen  237 ---------HNKTVTCLRLASDST--RLLSGSLDRHVKVFDTTNYKV------VHSW--KYPGPVLSI---------AVS  288 (487)
T ss_pred             ---------ccceEEEEEeecCCc--eEeecccccceEEEEccceEE------EEee--ecccceeeE---------Eec
Confidence                     779999999999998  679999999999999877554      2222  245778888         999


Q ss_pred             CCceeEEEecCCCeEEEEecc
Q 016457          339 SHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       339 ~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      |+++.++.|..||.+.+=+..
T Consensus       289 ~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  289 PDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             CCCceEEEecccceeeeehhh
Confidence            999999999999998776444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-34  Score=231.34  Aligned_cols=267  Identities=13%  Similarity=0.131  Sum_probs=230.5

Q ss_pred             CccccCCCCeEEEEecC-----ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEE
Q 016457           13 KSQSCDNVNSIKRFGLK-----NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQ   85 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~-----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~   85 (389)
                      ..||++.|.+..+|.+.     +..+++.+ ..+|..+.|+||.++|++++.+..+.+||+.+|.....+. +|...+.+
T Consensus       238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~s  317 (519)
T KOG0293|consen  238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSS  317 (519)
T ss_pred             eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcce
Confidence            68999999999999974     34667777 8999999999999999999999999999999999888775 35688999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      ++|.||+  ..+++|+.|+++..||++ |..+...++- ...|.+++..++|.++++.+.|..|++++.++...+..+. 
T Consensus       318 c~W~pDg--~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-  393 (519)
T KOG0293|consen  318 CAWCPDG--FRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-  393 (519)
T ss_pred             eEEccCC--ceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-
Confidence            9999999  799999999999999986 5555555554 3569999999999999999999999999998876665554 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                       ...+|+++..+.+++ ++++--.+..+.+||+.    +...+.++.+|..  .+..-+|-..+..++++|+.|+.|+||
T Consensus       394 -e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW  467 (519)
T KOG0293|consen  394 -EEQPITSFSISKDGK-LALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW  467 (519)
T ss_pred             -ccCceeEEEEcCCCc-EEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence             567899999999996 88888889999999999    4466777777753  455666765667899999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      +..+++++..+.+            |...|.+++|+|.... ++|+++.||+|+||....
T Consensus       468 hr~sgkll~~LsG------------Hs~~vNcVswNP~~p~-m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  468 HRISGKLLAVLSG------------HSKTVNCVSWNPADPE-MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EccCCceeEeecC------------CcceeeEEecCCCCHH-HhhccCCCCeEEEecCCc
Confidence            9999999999998            7799999999998876 579999999999997764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=231.83  Aligned_cols=261  Identities=17%  Similarity=0.205  Sum_probs=223.8

Q ss_pred             CeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457           21 NSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL   97 (389)
Q Consensus        21 ~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l   97 (389)
                      -.+.+|+..  ...+++.- ++.|.++.|..||++||+|...|.|+|||..+...+..+.+|+.+|..+.|+|.+. ..+
T Consensus        48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~-t~l  126 (487)
T KOG0310|consen   48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN-TML  126 (487)
T ss_pred             cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC-eEE
Confidence            456777765  34444555 88999999999999999999999999999877778889999999999999999885 789


Q ss_pred             EEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCC-ceeeeeeecccCCeeEEEE
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHF  175 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~  175 (389)
                      ++|+.|+.+++||+.+......+.+|++.|.|.+|+|..+.+++ ||.||.|++||++.. ..+.++.  |..+|..+.+
T Consensus       127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~  204 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLA  204 (487)
T ss_pred             EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEE
Confidence            99999999999999999887789999999999999998776554 555999999999987 6777776  9999999999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      -|.|. ++++++ ...|++||+.++.   +.+.....|...|+++.+. .++..|++++-|+.+++||+.+.+.++.+. 
T Consensus       205 lpsgs-~iasAg-Gn~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~-s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-  277 (487)
T KOG0310|consen  205 LPSGS-LIASAG-GNSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLA-SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-  277 (487)
T ss_pred             cCCCC-EEEEcC-CCeEEEEEecCCc---eehhhhhcccceEEEEEee-cCCceEeecccccceEEEEccceEEEEeee-
Confidence            99995 888887 5689999999654   3445555699999999999 677999999999999999999889888887 


Q ss_pred             ccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          256 ARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                                  ..++|.+++.+|+++  .++.|..||.+.+=+....+.
T Consensus       278 ------------~~~pvLsiavs~dd~--t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  278 ------------YPGPVLSIAVSPDDQ--TVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             ------------cccceeeEEecCCCc--eEEEecccceeeeehhhcccC
Confidence                        448999999999998  779999999888875555443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-33  Score=218.63  Aligned_cols=295  Identities=16%  Similarity=0.214  Sum_probs=249.4

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      .++.+.| .+.|..++-......+.+++.|.+.+||.+++|.++..+.||.+.|++|+|++.+  .++++++.|++-.||
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIW  217 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHH
Confidence            4455666 8999999988877899999999999999999999999999999999999999988  799999999999999


Q ss_pred             Ec------cCC----------------------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457          110 DT------RSF----------------------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ  149 (389)
Q Consensus       110 d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  149 (389)
                      ..      ...                                  .++..+.+|...|.+..|...+..+++++.|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            72      110                                  35667888999999999998899999999999999


Q ss_pred             EEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE
Q 016457          150 FWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       150 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (389)
                      +||+++++++..+. +|....+.++-+|..+ ++++++.|.+.++||++.   ....+..+.+|...|+++.|. . +..
T Consensus       298 lwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~-~-dd~  370 (481)
T KOG0300|consen  298 LWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFN-T-DDR  370 (481)
T ss_pred             eeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchh---hcceeeeecccccceeEEEEe-c-CCc
Confidence            99999999999999 9999999999999986 999999999999999992   345677788999999999997 3 347


Q ss_pred             EEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc
Q 016457          230 LWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI  308 (389)
Q Consensus       230 l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~  308 (389)
                      +++|+.|.+|++||+++.+ ++.++.             ...++..++.+..+.  +|+.--.+..|++||+...++..+
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIR-------------tdS~~NRvavs~g~~--iIAiPhDNRqvRlfDlnG~RlaRl  435 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIR-------------TDSPANRVAVSKGHP--IIAIPHDNRQVRLFDLNGNRLARL  435 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeee-------------cCCccceeEeecCCc--eEEeccCCceEEEEecCCCccccC
Confidence            9999999999999998764 555555             337788889888776  788888889999999998776222


Q ss_pred             CCCeEEEecccceeeeeccCCCcccCCCCCCCc--eeEEEecCCCeEEEEeccCC
Q 016457          309 GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHG--IFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       309 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~--~~l~s~~~dg~v~iW~~~~~  361 (389)
                         -..-..+|...|.|+         +|..+.  .-|+++|.|..+.-|+++.+
T Consensus       436 ---PrtsRqgHrRMV~c~---------AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  436 ---PRTSRQGHRRMVTCC---------AWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ---Ccccccccceeeeee---------eccccCcccccccccccceeeeeEeccc
Confidence               223335899999999         444332  23789999999999999764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.7e-31  Score=236.97  Aligned_cols=259  Identities=14%  Similarity=0.213  Sum_probs=191.6

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCc----------eee---eeecCCCCcEEEEEEeC-CCCCCEEEEEecCCe
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----------QYS---GECKGHSSTVNQISFSG-PSTPHVLHSCSSDGT  105 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----------~~~---~~~~~~~~~v~~i~~~~-~~~~~~l~s~~~dg~  105 (389)
                      .|.....++++..+++++.+.....|+...+          +..   ..+.+|.+.|.+++|+| ++  ++|++|+.|++
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~--~~LaSgS~Dgt   99 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP--QKLFTASEDGT   99 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC--CEEEEEeCCCE
Confidence            3444555666555566665666666654332          211   24678999999999999 66  69999999999


Q ss_pred             EEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457          106 IRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       106 i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  177 (389)
                      |++||+.++       .++..+.+|...|.+++|+|.+ +.|++++.|+.|++||+++++.+..+. .|...|.+++|+|
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~sp  178 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNL  178 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEEC
Confidence            999999764       3567889999999999999976 577888889999999999999888887 8999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc-eeeEEEecCCCcEEEEEe----cCCcEEEEEcCCCce-eE
Q 016457          178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS-VGKVGFFGETNKHLWCLT----HIETLSIWDWKDGQN-VA  251 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~  251 (389)
                      ++. +|++++.|+.|++||++++    ..+..+..|... +..+.|. +++..+++++    .|+.|++||+++... +.
T Consensus       179 dG~-lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        179 DGS-LLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             CCC-EEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            995 9999999999999999964    345566667654 3467787 4445555543    478999999987643 33


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      .....           +...+....|+++++  +|++|+ .||.|++||+.+++.      +......+..++..+
T Consensus       253 ~~~~d-----------~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~------~~~~~~~s~~~~~g~  309 (493)
T PTZ00421        253 TVDLD-----------QSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERL------TFCSSYSSVEPHKGL  309 (493)
T ss_pred             EeccC-----------CCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCce------EEEeeccCCCCCcce
Confidence            22211           224556677899988  666665 599999999998765      333332344555666

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-32  Score=211.46  Aligned_cols=278  Identities=17%  Similarity=0.179  Sum_probs=220.5

Q ss_pred             CcceEEEeecC-CCCeEEEEecCCeEEEEeCCC-ceee-eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT-GQYS-GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      .+.|.+++||| ...+++.|+.|++||+|+++. |..+ +....|.++|.+++|+.++  ..+++|+.|+.+++||+.++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccCC
Confidence            78899999999 456777888999999999986 4433 3445699999999999999  79999999999999999998


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCC--eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                       .+..+..|..+|.++.|-+...  .|++++.|.+|++||+|...++.++.  -.+.+.++..-.  + +++++..++.|
T Consensus       105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~--p-m~vVata~r~i  178 (347)
T KOG0647|consen  105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLY--P-MAVVATAERHI  178 (347)
T ss_pred             -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccC--c-eeEEEecCCcE
Confidence             5567888999999999986555  56777779999999999999999987  567777776643  3 88889999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCC
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      .+|+++.+..+.+.+..  ...-.+++++.. .+.+..+.|+-+|.+.|..+..+  +.-.+|..|+......   +..-
T Consensus       179 ~vynL~n~~te~k~~~S--pLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~---~~VY  252 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIES--PLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN---DDVY  252 (347)
T ss_pred             EEEEcCCCcchhhhhcC--cccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC---CceE
Confidence            99999865433332222  244568899888 56666799999999999999876  4445666666432210   1235


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      .|.+++|+|.-.  .|++.+.||++.+||-+....      +...+ .|..+|++.         +|+.+|.++|-+
T Consensus       253 aVNsi~FhP~hg--tlvTaGsDGtf~FWDkdar~k------Lk~s~-~~~qpItcc---------~fn~~G~ifaYA  311 (347)
T KOG0647|consen  253 AVNSIAFHPVHG--TLVTAGSDGTFSFWDKDARTK------LKTSE-THPQPITCC---------SFNRNGSIFAYA  311 (347)
T ss_pred             EecceEeecccc--eEEEecCCceEEEecchhhhh------hhccC-cCCCcccee---------EecCCCCEEEEE
Confidence            788999999877  789999999999999887654      45554 788999999         899999887665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-32  Score=234.52  Aligned_cols=260  Identities=18%  Similarity=0.257  Sum_probs=225.8

Q ss_pred             CCeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCC
Q 016457           20 VNSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPH   95 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~   95 (389)
                      ...|.+|+... .+..+..  .+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.  .  .
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~--~  271 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S--S  271 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C--c
Confidence            35789999753 3344433  78999999999999999999999999999999999999988 99999999998  3  4


Q ss_pred             EEEEEecCCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++.+++++|.|+.+.|||....+++..+. .|...|..++
T Consensus       272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~a  350 (484)
T KOG0305|consen  272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALA  350 (484)
T ss_pred             eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEee
Confidence            899999999999999998766555 88899999999999999999999999999999998888999998 8999999999


Q ss_pred             EecCCCCeEEEEe--CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCCCceeE
Q 016457          175 FVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKDGQNVA  251 (389)
Q Consensus       175 ~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~  251 (389)
                      |+|-.+++||+|+  .|+.|++||..++.     ..........|.++.|++...+++.+. ..++.|.||+..+.+.+.
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~  425 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA  425 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCc-----EecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence            9999888999975  59999999999663     333345678999999996555555443 346799999999988888


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .+.+            |...|..++++|||.  .+++|+.|.++++|++-..
T Consensus       426 ~l~g------------H~~RVl~la~SPdg~--~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  426 ELLG------------HTSRVLYLALSPDGE--TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eecC------------CcceeEEEEECCCCC--EEEEecccCcEEeccccCC
Confidence            8887            779999999999999  8899999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4e-32  Score=241.13  Aligned_cols=263  Identities=18%  Similarity=0.270  Sum_probs=232.4

Q ss_pred             CccccCCCCeEEEEecCc--eeee-eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQT-NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...+.+.+++|++|+..+  .+.. +.| .+.|.++++..-+.+|++|+.|.++++||..+|++...+.+|.+.|.++..
T Consensus       220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~  299 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI  299 (537)
T ss_pred             eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence            345788899999999864  4444 777 999999999987789999999999999999999999999999999999988


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      .+    .++++|+.|.+|++|++.++..+..+.+|..+|.++..+  ++.+++++.|++|++||+.+++++.++. +|..
T Consensus       300 ~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~  372 (537)
T KOG0274|consen  300 DP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTG  372 (537)
T ss_pred             cC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcc
Confidence            64    478999999999999999999999999999999999996  8899999999999999999999999999 8999


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      .|.++.+.+.  +.+++|+.|+.|++||+++..   +++..+..|...+..+.+.   +++|++++.|++|++||..+++
T Consensus       373 ~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  373 RVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             eEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCc
Confidence            9999988876  389999999999999999542   6777788888888777764   4689999999999999999999


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +++.+.+.           |...+..+++.  ..  .+++++.||.+++||+.+++.
T Consensus       445 ~~~~~~~~-----------~~~~v~~l~~~--~~--~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  445 CLRTLEGR-----------HVGGVSALALG--KE--EILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             eeeeeccC-----------CcccEEEeecC--cc--eEEEEecCCeeEEEecccCch
Confidence            99999873           33677777776  22  678888999999999999876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.4e-34  Score=222.77  Aligned_cols=269  Identities=14%  Similarity=0.161  Sum_probs=233.3

Q ss_pred             CCCCCccccCCCCeEEEEecCc--ee--------eeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec
Q 016457            9 QSQPKSQSCDNVNSIKRFGLKN--SI--------QTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK   77 (389)
Q Consensus         9 ~~~~~~~s~~~~~~i~~w~~~~--~~--------~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~   77 (389)
                      ++....++++-||.|.+||..+  .-        ..+.- +++|.|+.|+.|...||+|+.||.|++|.+.+|+++..|.
T Consensus       223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            3444678899999999999631  11        11222 8899999999999999999999999999999999999997


Q ss_pred             -CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457           78 -GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus        78 -~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  156 (389)
                       +|+..|+|+.|+.++  ..+++++.|.++++.-+.+|+++..+++|.+.|+...|.++|..++++++||+|++|+.++.
T Consensus       303 rAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  303 RAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             hhhccCeeEEEEccCc--chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence             799999999999999  69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeee-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEE
Q 016457          157 KQVACLEE-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       157 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~  232 (389)
                      +++.+++. +...+|.++-.-|.++..++++...++|+|.++...     .++.+..   ..+...+.+.+ |.|.++++
T Consensus       381 eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~~lS-pkGewiYc  454 (508)
T KOG0275|consen  381 ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINAILS-PKGEWIYC  454 (508)
T ss_pred             hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEEEec-CCCcEEEE
Confidence            99998873 344578999999988879999999999999999842     2333322   23345556677 78899999


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      .+.|+.++.|...+|+..+++..            |+..+..++-+|..+  .|++-++||.+++|.
T Consensus       455 igED~vlYCF~~~sG~LE~tl~V------------hEkdvIGl~HHPHqN--llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  455 IGEDGVLYCFSVLSGKLERTLPV------------HEKDVIGLTHHPHQN--LLASYSEDGLLKLWK  507 (508)
T ss_pred             EccCcEEEEEEeecCceeeeeec------------ccccccccccCcccc--hhhhhcccchhhhcC
Confidence            99999999999999999999887            778899999999888  889999999999994

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1e-33  Score=214.58  Aligned_cols=264  Identities=16%  Similarity=0.237  Sum_probs=226.2

Q ss_pred             ccCCCCe--EEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           16 SCDNVNS--IKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        16 s~~~~~~--i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      +++.|+.  +|-=+.+.-+-++.+ +++|.+..++.+..+.|+++.|-+-++||.-+|..+.++. |...|.+++|+.+.
T Consensus        34 sa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds  112 (334)
T KOG0278|consen   34 SASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS  112 (334)
T ss_pred             EeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc
Confidence            3444443  333345567889999 9999999999999899999999999999999999999997 89999999999998


Q ss_pred             CCCEEEEEecCCeEEEEEccCCe-EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFH-EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                        ++|++|+.++.+||||++..+ +...+.+|.+.|..+.|...+..+++++.|++|++||.+++..++++.  ...+|+
T Consensus       113 --~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~Vt  188 (334)
T KOG0278|consen  113 --NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVT  188 (334)
T ss_pred             --hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCc
Confidence              799999999999999998654 567789999999999999888999999999999999999999999997  788999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      ++.++++|.  +++-...+.|.+||..+.    ..+. ....+..|.+..++ |+...+++|+.|..++.||..++..+.
T Consensus       189 SlEvs~dG~--ilTia~gssV~Fwdaksf----~~lK-s~k~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  189 SLEVSQDGR--ILTIAYGSSVKFWDAKSF----GLLK-SYKMPCNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             ceeeccCCC--EEEEecCceeEEeccccc----ccee-eccCcccccccccc-CCCceEEecCcceEEEEEeccCCceee
Confidence            999999985  556666788999999853    2333 33455678888998 566899999999999999999999888


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+..           +|.++|.++.|+|+|.  .-++|++||+|++|....++.
T Consensus       261 ~~nk-----------gh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  261 SYNK-----------GHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eccc-----------CCCCceEEEEECCCCc--eeeccCCCceEEEEEecCCCc
Confidence            8622           2889999999999998  779999999999999887665

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.1e-31  Score=233.97  Aligned_cols=229  Identities=15%  Similarity=0.246  Sum_probs=179.5

Q ss_pred             EecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--------EEEEEEcCCCCe
Q 016457           56 SLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--------EVWSVTAGSQEI  127 (389)
Q Consensus        56 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v  127 (389)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+.. .+|++|+.|++|+|||+.++.        ++..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            55678999999887778888999999999999999732 699999999999999997542        345678899999


Q ss_pred             EEEEEeCCCCeEE-EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc
Q 016457          128 FCFSFGGSTDYLL-AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL  206 (389)
Q Consensus       128 ~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (389)
                      .+++|+|.+..++ +++.|+.|++||+++++.+..+.  |...|.+++|+|+|. +|++++.|+.|++||++++    ..
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg----~~  201 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ----EI  201 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC----cE
Confidence            9999999888765 66779999999999998877775  667899999999995 9999999999999999964    34


Q ss_pred             ceeeeccCCceeeEE-----EecCCCcEEEEEecCC----cEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeec
Q 016457          207 LESVINVGTSVGKVG-----FFGETNKHLWCLTHIE----TLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       207 ~~~~~~~~~~i~~~~-----~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      +..+..|.+.+....     |+ +++.+|++++.++    +|+|||+++ .+++..+....          +...+....
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~----------~~~~L~p~~  270 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN----------ASAPLIPHY  270 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC----------CccceEEee
Confidence            566677876654333     33 5667888887764    799999985 45565543211          223333333


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ..+++.  ++++|+.|+.|++|++..+..
T Consensus       271 D~~tg~--l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        271 DESTGL--IYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             eCCCCC--EEEEEECCCeEEEEEccCCcE
Confidence            344455  788999999999999987643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9e-32  Score=220.59  Aligned_cols=298  Identities=14%  Similarity=0.176  Sum_probs=243.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee----ee-------------e-cCCCCcEEEEEEeCCCCCCEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS----GE-------------C-KGHSSTVNQISFSGPSTPHVLHS   99 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~----~~-------------~-~~~~~~v~~i~~~~~~~~~~l~s   99 (389)
                      .-+|.+++++|++++.++++.+++|.-|++.+|+..    ..             - .+|...+.+++.++++  .+|++
T Consensus       142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg--kylat  219 (479)
T KOG0299|consen  142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG--KYLAT  219 (479)
T ss_pred             cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC--cEEEe
Confidence            788999999999999999999999999999887632    11             1 2688899999999999  79999


Q ss_pred             EecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCC
Q 016457          100 CSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       100 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  179 (389)
                      |+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++. +|++.|..|.....+
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~re  298 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRE  298 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhccc
Confidence            9999999999999999999999999999999999778889999999999999999999999998 999999999988887


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL  259 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  259 (389)
                      + .+-+|+.|+++++|++..     .....+.++.+.+.+++|.  +...+++|+.+|.|.+|++...+++.+......+
T Consensus       299 R-~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  299 R-CVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             c-eEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            5 677777999999999962     2344556778899999997  4468999999999999999999998887643322


Q ss_pred             ccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC
Q 016457          260 ASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS  339 (389)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~  339 (389)
                      ....-...+..+|++++..|..+  ++++|+.+|.|++|.+..+--  .-.++..+.  -.+.|+++         +|++
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sd--L~asGS~~G~vrLW~i~~g~r--~i~~l~~ls--~~GfVNsl---------~f~~  435 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSD--LLASGSWSGCVRLWKIEDGLR--AINLLYSLS--LVGFVNSL---------AFSN  435 (479)
T ss_pred             cCCccccccccceeeeEecccCc--eEEecCCCCceEEEEecCCcc--ccceeeecc--cccEEEEE---------EEcc
Confidence            22111112335899999999888  899999999999999988721  001233332  45788888         8999


Q ss_pred             CceeEEE-ecCCCeEEEEeccCC
Q 016457          340 HGIFGWT-GGEDGRLCCWLSDDS  361 (389)
Q Consensus       340 ~~~~l~s-~~~dg~v~iW~~~~~  361 (389)
                      +|++|++ .|....+--|-....
T Consensus       436 sgk~ivagiGkEhRlGRW~~~k~  458 (479)
T KOG0299|consen  436 SGKRIVAGIGKEHRLGRWWCLKS  458 (479)
T ss_pred             CCCEEEEecccccccceeeEeec
Confidence            9995555 466666766766544

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.2e-30  Score=232.61  Aligned_cols=247  Identities=9%  Similarity=0.120  Sum_probs=191.0

Q ss_pred             ccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCce--------eeeeecCCCCcE
Q 016457           16 SCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQ--------YSGECKGHSSTV   83 (389)
Q Consensus        16 s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v   83 (389)
                      .++.++.|++|+...  .+..+.+ .+.|.+++|+|+ +.+||+|+.|++|+|||+.++.        ++..+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            456678899998753  5566677 889999999997 7899999999999999997642        334678899999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      .+++|+|++. .+|++++.|++|+|||+++++.+..+. +...|.+++|+|++..+++++.|+.|++||+++++.+.++.
T Consensus       129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        129 SIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999999873 456899999999999999998887776 45789999999999999888889999999999999998887


Q ss_pred             ecccCCeeEE-----EEecCCCCeEEEEeCCC----cEEEEecCCCCCCCccceeeeccCCcee--eEEEecCCCcEEEE
Q 016457          164 ESHVEDVTQV-----HFVPNNQNKVVSASVDG----LICTFDTGGDINDDDLLESVINVGTSVG--KVGFFGETNKHLWC  232 (389)
Q Consensus       164 ~~~~~~v~~~-----~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~  232 (389)
                       +|.+.+.+.     .|++++. +|++++.|+    .|++||++...   .++... .+.....  .-.+.++++.++++
T Consensus       207 -gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~-~ld~~~~~L~p~~D~~tg~l~ls  280 (568)
T PTZ00420        207 -IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTT---SALVTM-SIDNASAPLIPHYDESTGLIYLI  280 (568)
T ss_pred             -cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCC---CceEEE-EecCCccceEEeeeCCCCCEEEE
Confidence             888765433     3457775 888877664    79999999421   233322 2222222  22444567889999


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      |+.|+.|++|++..+. +..+....          +..+..+++|.|..
T Consensus       281 GkGD~tIr~~e~~~~~-~~~l~~~~----------s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        281 GKGDGNCRYYQHSLGS-IRKVNEYK----------SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EECCCeEEEEEccCCc-EEeecccc----------cCCCccceEEcccc
Confidence            9999999999998763 33343322          55778889999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=223.09  Aligned_cols=295  Identities=15%  Similarity=0.163  Sum_probs=221.7

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      .+.+ ...|.++++.|.|..|++|+.|.+|++||+....    ..+.+ ......|+++.|++.+  ..|++.+.....+
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~~iLvvsg~aqak  239 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--DQILVVSGSAQAK  239 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--CeEEEEecCccee
Confidence            4555 8899999999999999999999999999987432    12222 2244579999999999  6777777788899


Q ss_pred             EEEccCCeEEEE------------EEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCc-eeeeee----ecccCC
Q 016457          108 AWDTRSFHEVWS------------VTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKK-QVACLE----ESHVED  169 (389)
Q Consensus       108 iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~----~~~~~~  169 (389)
                      |+|-...+.+..            -++|...++|.+|+|... .+++++.||++++||+...+ .++.+.    .+..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            999654333322            246788999999999754 57778889999999998653 333333    133457


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      ++.++|+++++ +||+|+.||.|.+|+.++.. .......-..|..  .|++|.|+ .+|++|++-+.|+++++||+++.
T Consensus       320 ~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  320 VTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ceeeecCCCcc-hhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeecccc
Confidence            89999999996 99999999999999986432 1122223344555  89999999 89999999999999999999976


Q ss_pred             -ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC------CceEEEEEeccCCccccCCCeEEEecccc
Q 016457          248 -QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                       +++....+..          ...+-+.++|||+.+  +|++|+.      .|.+.+||..+.+.      ++.+. -..
T Consensus       397 kkpL~~~tgL~----------t~~~~tdc~FSPd~k--li~TGtS~~~~~~~g~L~f~d~~t~d~------v~ki~-i~~  457 (641)
T KOG0772|consen  397 KKPLNVRTGLP----------TPFPGTDCCFSPDDK--LILTGTSAPNGMTAGTLFFFDRMTLDT------VYKID-IST  457 (641)
T ss_pred             ccchhhhcCCC----------ccCCCCccccCCCce--EEEecccccCCCCCceEEEEeccceee------EEEec-CCC
Confidence             4555555433          335678899999988  8888864      47899999888765      56665 345


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE-eccCC
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW-LSDDS  361 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW-~~~~~  361 (389)
                      ..|..+         .|+|.-+.|+.|+.||.+++| +...+
T Consensus       458 aSvv~~---------~WhpkLNQi~~gsgdG~~~vyYdp~~S  490 (641)
T KOG0772|consen  458 ASVVRC---------LWHPKLNQIFAGSGDGTAHVYYDPNES  490 (641)
T ss_pred             ceEEEE---------eecchhhheeeecCCCceEEEECcccc
Confidence            555555         788887778888889999875 44433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=231.58  Aligned_cols=312  Identities=17%  Similarity=0.206  Sum_probs=245.8

Q ss_pred             CCCeEEEEecCc------eeeeeecCcceEEEeecCC-----------CCeEEEEecCCeEEEEeCCCc---eeee----
Q 016457           19 NVNSIKRFGLKN------SIQTNFGDDYVFEIVPKND-----------WSLMAVSLSTNVVKLYSPVTG---QYSG----   74 (389)
Q Consensus        19 ~~~~i~~w~~~~------~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~iw~~~~~---~~~~----   74 (389)
                      .|..+++||+..      +...+.+...|+.+.--|.           ...+.+++.|++|++|+++.+   +..+    
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            578999999853      3333444666777664441           126889999999999998642   1110    


Q ss_pred             ------e------------------------ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC
Q 016457           75 ------E------------------------CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS  124 (389)
Q Consensus        75 ------~------------------------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  124 (389)
                            .                        .-.....+.+++.+|++  ++|++|..-|++++|++...+....+..|.
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g--qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe  501 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG--QHLASGDRGGNLRVYDLQELEYTCFMEAHE  501 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc--ceecccCccCceEEEEehhhhhhhheeccc
Confidence                  0                        01123569999999999  899999999999999999999999999999


Q ss_pred             CCeEEEEEeCC---CCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCC-CeEEEEeCCCcEEEEecCC
Q 016457          125 QEIFCFSFGGS---TDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQ-NKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       125 ~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  199 (389)
                      .+|.|+.|+-.   .+.|++++.|..|++||.... .+++++. +|...|+++.|--.|- ..+++++.|..|.+--.+.
T Consensus       502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk  580 (1080)
T KOG1408|consen  502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK  580 (1080)
T ss_pred             ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence            99999999742   345666777999999998754 5677887 8999999999987762 2789999998775432221


Q ss_pred             CCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeeccc
Q 016457          200 DIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYP  278 (389)
Q Consensus       200 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (389)
                      ...- ......-......+..++.. +..+++++++.|..|+|||+.+++..+.|++.+         +|++....+...
T Consensus       581 ~~~g~~f~r~t~t~~ktTlYDm~Vd-p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~---------~~eG~lIKv~lD  650 (1080)
T KOG1408|consen  581 ASSGRLFPRHTQTLSKTTLYDMAVD-PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR---------DHEGDLIKVILD  650 (1080)
T ss_pred             ccCceeccccccccccceEEEeeeC-CCcceEEEEecccceEEEeccccceeeeecccc---------cCCCceEEEEEC
Confidence            0000 00001111124568889998 778899999999999999999999999999865         377889999999


Q ss_pred             CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          279 GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      |.|.  ||++...|.++.++|+.+++.      +.+.. ||.+.|+.+         .|.+|.+.|++.+.||.|.+|++
T Consensus       651 PSgi--Y~atScsdktl~~~Df~sgEc------vA~m~-GHsE~VTG~---------kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  651 PSGI--YLATSCSDKTLCFVDFVSGEC------VAQMT-GHSEAVTGV---------KFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             CCcc--EEEEeecCCceEEEEeccchh------hhhhc-Ccchheeee---------eecccchhheeecCCceEEEEEC
Confidence            9988  999999999999999999887      77887 999999999         99999999999999999999999


Q ss_pred             cCC
Q 016457          359 DDS  361 (389)
Q Consensus       359 ~~~  361 (389)
                      ...
T Consensus       713 p~~  715 (1080)
T KOG1408|consen  713 PLT  715 (1080)
T ss_pred             chh
Confidence            864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=226.10  Aligned_cols=262  Identities=14%  Similarity=0.156  Sum_probs=223.8

Q ss_pred             CCccccCCCCeEEEEecC----ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK----NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      ...++++.|..|++|+..    ..+.++.| .++|+++.|.+++..+++++.|+.+++|++...+...++.+|++.|+++
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence            568899999999999984    25667777 8899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      .|....  ..+++|+.|.+|++||+....+..++.. .+.+..|..+  ...++++-.|++|++||+++..+..... . 
T Consensus       268 k~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~-  340 (459)
T KOG0288|consen  268 KFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-L-  340 (459)
T ss_pred             hhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEee-c-
Confidence            998776  4599999999999999999888877664 4667777775  4566667779999999999999999987 4 


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      .+.|+++..++++. .+++++.|.++.+.|+++..    ....+.    ......+.+.|+ |++.|+++|+.||.|+||
T Consensus       341 gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             CcceeeEeeccCCe-EEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEE
Confidence            45899999999995 88899999999999999642    222221    123458889999 888999999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      ++.++++...+....          ....|+++.|+|.|.  ++++++.++.+.+|
T Consensus       415 ~v~tgKlE~~l~~s~----------s~~aI~s~~W~~sG~--~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  415 SVFTGKLEKVLSLST----------SNAAITSLSWNPSGS--GLLSADKQKAVTLW  458 (459)
T ss_pred             EccCceEEEEeccCC----------CCcceEEEEEcCCCc--hhhcccCCcceEec
Confidence            999999998887643          223799999999999  78999999999998

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-31  Score=206.59  Aligned_cols=277  Identities=15%  Similarity=0.156  Sum_probs=223.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .+.|.++.|+|.+..|++++.||++++|++........++ |..++.+++|.++.   .+++|+.||.|+.+|+.++...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES---TIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc---eEEEeccCceEEEEEecCCcce
Confidence            6889999999999999999999999999999876666666 89999999999764   8999999999999999876654


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                       .+..|..+|.|+.+.+..+.+++++.|++|++||.+.......+.  ....|.++....   +.|++|+.+..|.+||+
T Consensus        89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g---~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSG---NRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             -eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccC---CEEEEeecCceEEEEEc
Confidence             566789999999999999999999999999999999877777765  455888888765   48999999999999999


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----ceeEEeecccccccCCccCCCCCcee
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----QNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      ++.....  .......+-.+.++++. |++.=+++++-||.|.+=.+...    +....|..|+......   ...-+|.
T Consensus       163 Rn~~~~~--q~reS~lkyqtR~v~~~-pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~---~~~yPVN  236 (323)
T KOG1036|consen  163 RNLDEPF--QRRESSLKYQTRCVALV-PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT---EIIYPVN  236 (323)
T ss_pred             ccccchh--hhccccceeEEEEEEEe-cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc---eEEEEec
Confidence            9543211  22233345678999999 47777899999999888666554    3445566555332211   1235789


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                      +++|+|--+  .++||+.||.|.+||..+.+.      +.++. .-...|..+         +|+.||..||.|+
T Consensus       237 ai~Fhp~~~--tfaTgGsDG~V~~Wd~~~rKr------l~q~~-~~~~SI~sl---------sfs~dG~~LAia~  293 (323)
T KOG1036|consen  237 AIAFHPIHG--TFATGGSDGIVNIWDLFNRKR------LKQLA-KYETSISSL---------SFSMDGSLLAIAS  293 (323)
T ss_pred             eeEeccccc--eEEecCCCceEEEccCcchhh------hhhcc-CCCCceEEE---------EeccCCCeEEEEe
Confidence            999999866  789999999999999998765      55554 445678888         9999999999987

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.6e-30  Score=230.69  Aligned_cols=268  Identities=12%  Similarity=0.137  Sum_probs=200.9

Q ss_pred             ccccCCCCeEEEEecCc--e-------------eeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCc------
Q 016457           14 SQSCDNVNSIKRFGLKN--S-------------IQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTG------   70 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--~-------------~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~------   70 (389)
                      ..+++.+.....|+...  .             ...+.+ .+.|++++|+| ++++|++|+.|++|++||+.++      
T Consensus        35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~  114 (493)
T PTZ00421         35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI  114 (493)
T ss_pred             cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc
Confidence            34555566666776421  1             112445 78899999999 8889999999999999999764      


Q ss_pred             -eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457           71 -QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ  149 (389)
Q Consensus        71 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  149 (389)
                       +++..+.+|...|.+++|+|++. ++|++++.|++|+|||+.+++.+..+..|...|.+++|+|++..+++++.|+.|+
T Consensus       115 ~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~Ir  193 (493)
T PTZ00421        115 SDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN  193 (493)
T ss_pred             CcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEE
Confidence             34667889999999999999763 5999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECcCCceeeeeeecccCC-eeEEEEecCCCCeEEEEe----CCCcEEEEecCCCCCCCccceeeecc-CCceeeEEEe
Q 016457          150 FWDWRNKKQVACLEESHVED-VTQVHFVPNNQNKVVSAS----VDGLICTFDTGGDINDDDLLESVINV-GTSVGKVGFF  223 (389)
Q Consensus       150 iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~  223 (389)
                      +||+++++.+..+. +|... +..+.|.+++. .+++++    .|+.|++||++...   ..+.....+ ...+....|+
T Consensus       194 IwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d~~~~~~~~~~d  268 (493)
T PTZ00421        194 IIDPRDGTIVSSVE-AHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLDQSSALFIPFFD  268 (493)
T ss_pred             EEECCCCcEEEEEe-cCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCC---CceeEeccCCCCceEEEEEc
Confidence            99999999988887 77764 45678888875 666544    47899999998532   222222222 2344445566


Q ss_pred             cCCCcEEEEEe-cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          224 GETNKHLWCLT-HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       224 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                       +++.+|++++ .|+.|++||+.+++.+......           +..++..++|.|.-.    +-....-..++|.+..
T Consensus       269 -~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-----------s~~~~~g~~~~pk~~----~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        269 -EDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-----------SVEPHKGLCMMPKWS----LDTRKCEIARFYALTY  332 (493)
T ss_pred             -CCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-----------CCCCCcceEeccccc----ccccceeeeEEEEecC
Confidence             7777888877 5999999999998877654431           335677788887421    1122223346666544


Q ss_pred             C
Q 016457          303 G  303 (389)
Q Consensus       303 ~  303 (389)
                      .
T Consensus       333 ~  333 (493)
T PTZ00421        333 H  333 (493)
T ss_pred             C
Confidence            3

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.8e-31  Score=240.48  Aligned_cols=288  Identities=14%  Similarity=0.145  Sum_probs=237.2

Q ss_pred             CcceEEEeecCCCCeEEEEe--cCCeEEEEeCCC------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           38 DDYVFEIVPKNDWSLMAVSL--STNVVKLYSPVT------------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ...|++++.+|||..+|+|+  .|+.++||+.+.            .+.+.....|.+.|+|+.|+|||  .+||+|+.|
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG--~~lAsGSDD   90 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG--SYLASGSDD   90 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC--CeEeeccCc
Confidence            56699999999999999999  799999998642            13345567799999999999999  799999999


Q ss_pred             CeEEEEEccC------------------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457          104 GTIRAWDTRS------------------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus       104 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +.|.||....                  .+.+..+.+|...|..++|+|++..+++++.|++|.+||.++.+.+..+. +
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-G  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-c
Confidence            9999998762                  14678899999999999999999999999999999999999999999998 9


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee------ccCCceeeEEEecCCCcEEEEEec----
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFFGETNKHLWCLTH----  235 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~----  235 (389)
                      |.+.|-.+.|.|-|+ +|++-+.|++|++|++....    ....+.      ........+.|+ |+|++|++...    
T Consensus       170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f~RlSWS-PDG~~las~nA~n~~  243 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFFLRLSWS-PDGHHLASPNAVNGG  243 (942)
T ss_pred             ccccccceEECCccC-eeeeecCCceEEEEEcccce----eeEeeccchhhCCCcceeeecccC-CCcCeecchhhccCC
Confidence            999999999999997 99999999999999976321    111111      123457889999 88999987643    


Q ss_pred             CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC--------CCe-------EEEEEecCCceEEEEEe
Q 016457          236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE--------GEN-------LWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~-------~~l~~g~~dg~i~i~~~  300 (389)
                      -..+.|.+-.+.+.-..+.+            |..++..+.|+|.        |..       ..+|+|+.|+.|.||..
T Consensus       244 ~~~~~IieR~tWk~~~~LvG------------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  244 KSTIAIIERGTWKVDKDLVG------------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             cceeEEEecCCceeeeeeec------------CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence            23788888777777777777            7799999999982        111       25789999999999988


Q ss_pred             ccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          301 NYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ...+.      +..+..--...|.++         +|+|||.-|+.+|.||+|.+..+++.
T Consensus       312 ~~~RP------l~vi~~lf~~SI~Dm---------sWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  312 ALPRP------LFVIHNLFNKSIVDM---------SWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCCCc------hhhhhhhhcCceeee---------eEcCCCCeEEEEecCCeEEEEEcchH
Confidence            65443      333332334778888         99999999999999999999999976

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-30  Score=226.40  Aligned_cols=323  Identities=12%  Similarity=0.155  Sum_probs=258.0

Q ss_pred             ccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           16 SCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        16 s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      -++.+|.+++||+.  +.+.++++ .+.|+++.-+|--..+|+|..+|+|.|+|++.++.+.+++...+.|++++|..||
T Consensus       177 vGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG  256 (910)
T KOG1539|consen  177 VGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG  256 (910)
T ss_pred             EeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence            36788999999985  68899999 9999999999999999999999999999999999999999546999999999999


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccC
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVE  168 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~  168 (389)
                      . ..+++|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|+.+++|=..++.-   +.++..+|..
T Consensus       257 ~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  257 N-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             C-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            6 688999999999999999888877766 6789999999998888888888899988885554321   2333348999


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC-----------------CC-------ccc-----------------
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN-----------------DD-------DLL-----------------  207 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------------~~-------~~~-----------------  207 (389)
                      +..|+.|.......+.+++.|++++.|++.....                 ..       .++                 
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            9999999844445899999999888877642100                 00       000                 


Q ss_pred             --------------------eeeec------cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457          208 --------------------ESVIN------VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS  261 (389)
Q Consensus       208 --------------------~~~~~------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  261 (389)
                                          .....      ....+.+++.+ ..|++.+.|+..|.|-+|++.+|....+|....    
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~----  490 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP----  490 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCc----
Confidence                                00011      12456788888 788999999999999999999998888885211    


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc----------------------------------
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT----------------------------------  307 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~----------------------------------  307 (389)
                           .|..+|++++...-++  .+++++.+|.+++||.....+..                                  
T Consensus       491 -----ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  491 -----AHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             -----cccCceeEEEecCCCc--eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence                 1779999999988777  78999999999999987665210                                  


Q ss_pred             -cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          308 -IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       308 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       ..+.+..+. ||+..|+++         +|||||++|++++.|++||+||+..+
T Consensus       564 ~t~kvvR~f~-gh~nritd~---------~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  564 VTRKVVREFW-GHGNRITDM---------TFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             hhhhhhHHhh-ccccceeee---------EeCCCCcEEEEeecCCcEEEEeccCc
Confidence             011223333 788888888         99999999999999999999999987

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-29  Score=189.55  Aligned_cols=293  Identities=13%  Similarity=0.102  Sum_probs=227.0

Q ss_pred             eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCC------c-----ee----eeeecCCCCcEEEEEEeCCCCCC
Q 016457           31 SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------G-----QY----SGECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------~-----~~----~~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      .+..+....+|.+++|+|.|.+.|+|+...+.+|.....      +     ++    .+.-+.|.+.|.|.+|+|.+  +
T Consensus        25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--e  102 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--E  102 (350)
T ss_pred             EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--C
Confidence            344455578999999999999999999999998875321      1     11    11224588999999999999  7


Q ss_pred             EEEEEecCCeEEEEEccCCeE-----EEEEEcCCCCeEEEEEeC---CCCeEEEeec--CCeEEEEECcCCceeeeeeec
Q 016457           96 VLHSCSSDGTIRAWDTRSFHE-----VWSVTAGSQEIFCFSFGG---STDYLLAAGC--GSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +|++|+.|++|++.-.+...+     -..|..|.+.|..++|-.   .+..+++++.  |..|++-|...++..+.+. +
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-g  181 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-G  181 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-C
Confidence            999999999999976653322     245778899999999963   2344555443  7788888999999999998 9


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----c---cCCceeeEEEecCCCcEEEEEecCCc
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----N---VGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      |.+-|.++-- -++ .++++|+.|.+|++||++-.    ..+..+.    .   ..+.|.+++.. |.+.+|++|-.|..
T Consensus       182 htghilalys-wn~-~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vd-psgrll~sg~~dss  254 (350)
T KOG0641|consen  182 HTGHILALYS-WNG-AMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLASGHADSS  254 (350)
T ss_pred             CcccEEEEEE-ecC-cEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEEC-CCcceeeeccCCCc
Confidence            9999988742 334 49999999999999999943    2232221    1   12578899998 78999999999999


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecc
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGG  318 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  318 (389)
                      ..+||++.++.++.|..            |...|.++.|+|...  |+++++.|..|++-|+...-...+  ++... ..
T Consensus       255 c~lydirg~r~iq~f~p------------hsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el--~~~vv-~e  317 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHP------------HSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHEL--PIMVV-AE  317 (350)
T ss_pred             eEEEEeeCCceeeeeCC------------CccceeEEEeCCCce--EEEEecccceEEEeecccchhhcC--ceEEE-Ee
Confidence            99999999999999986            779999999999777  999999999999999975422111  12222 35


Q ss_pred             cceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          319 HTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       319 h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      |...+..+         .|.|..--+++.+.|.++.+|-++
T Consensus       318 hkdk~i~~---------rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  318 HKDKAIQC---------RWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccCceEEE---------EecCccceeeeccCcceEEEeccC
Confidence            77666666         788888778999999999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-30  Score=204.02  Aligned_cols=247  Identities=16%  Similarity=0.193  Sum_probs=203.4

Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC--eEEEeecCCeEE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQ  149 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~  149 (389)
                      ++..+..|.++|++++.+  +  .++++|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-.  .|++++.||.|.
T Consensus        35 ~lF~~~aH~~sitavAVs--~--~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--G--PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             ccccccccccceeEEEec--c--eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            356678899999999995  4  6999999999999999999999999999999999999997765  899999999999


Q ss_pred             EEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE
Q 016457          150 FWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       150 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (389)
                      +|+....+.+.+++ +|...|+.++.+|.++ +.++.+.|+.++.||+-.+..     .........-..+.|+ +.|.+
T Consensus       111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~-----a~v~~L~~~at~v~w~-~~Gd~  182 (362)
T KOG0294|consen  111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRV-----AFVLNLKNKATLVSWS-PQGDH  182 (362)
T ss_pred             EEEcCCeEEeeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCcc-----ceeeccCCcceeeEEc-CCCCE
Confidence            99999999999999 9999999999999997 889999999999999986642     2222223334459999 77787


Q ss_pred             EEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccC
Q 016457          230 LWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIG  309 (389)
Q Consensus       230 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~  309 (389)
                      ++.+..+ .|-+|.+.+......+..             +..+.++.|-.. .  +|++|..|+.|.+||.+....    
T Consensus       183 F~v~~~~-~i~i~q~d~A~v~~~i~~-------------~~r~l~~~~l~~-~--~L~vG~d~~~i~~~D~ds~~~----  241 (362)
T KOG0294|consen  183 FVVSGRN-KIDIYQLDNASVFREIEN-------------PKRILCATFLDG-S--ELLVGGDNEWISLKDTDSDTP----  241 (362)
T ss_pred             EEEEecc-EEEEEecccHhHhhhhhc-------------cccceeeeecCC-c--eEEEecCCceEEEeccCCCcc----
Confidence            7777765 577999887776665553             244666666653 3  789999999999999998554    


Q ss_pred             CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          310 PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       310 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                        +..+. +|...|.++++       --.|++.||+|+|.||.|++||++-.
T Consensus       242 --~~~~~-AH~~RVK~i~~-------~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  242 --LTEFL-AHENRVKDIAS-------YTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             --ceeee-cchhheeeeEE-------EecCCceEEEEeccCceEEEEEcccc
Confidence              56665 99999999931       12577899999999999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.8e-32  Score=216.39  Aligned_cols=269  Identities=17%  Similarity=0.219  Sum_probs=226.3

Q ss_pred             cCCCCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcE
Q 016457            7 ESQSQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTV   83 (389)
Q Consensus         7 ~~~~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v   83 (389)
                      ++......|+++.||.|++||+.  +++.++.. .+.|..+++..  ..++++++|.+|+.|.++ +.++.++.+ ...+
T Consensus        75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~  150 (433)
T KOG0268|consen   75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVY  150 (433)
T ss_pred             CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccc
Confidence            44445578999999999999996  47778887 88999999987  578888889999999987 457777764 4567


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~  162 (389)
                      ..|.-+..+  ..++|+|.+  |.|||.....++.++.-....|.++.|+|....+++++ +|+.|.+||+++..++..+
T Consensus       151 ~gIdh~~~~--~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV  226 (433)
T KOG0268|consen  151 LGIDHHRKN--SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV  226 (433)
T ss_pred             ccccccccc--ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence            777766555  689998875  99999999999999998889999999999888777766 6999999999999999887


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      .  ....-+.|+|+|+. ..|++|++|..++.||++.   ...++....+|.+.|.++.|+ |.|+-+++|+.|.+|+||
T Consensus       227 i--~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  227 I--LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             e--eeccccceecCccc-cceeeccccccceehhhhh---hcccchhhcccceeEEEeccC-CCcchhccccccceEEEe
Confidence            6  45667889999966 5899999999999999993   457777888999999999999 788999999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      ..+.+.....+-.-           ....|.++.|+.|.+  |+++||.|+.|++|.....
T Consensus       300 ~~~~~~SRdiYhtk-----------RMq~V~~Vk~S~Dsk--yi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  300 PVNHGHSRDIYHTK-----------RMQHVFCVKYSMDSK--YIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             ecCCCcchhhhhHh-----------hhheeeEEEEecccc--EEEecCCCcceeeeecchh
Confidence            99887655544332           236799999999999  9999999999999986543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-32  Score=230.56  Aligned_cols=281  Identities=15%  Similarity=0.233  Sum_probs=229.0

Q ss_pred             EEeec-CCCCeEEEEecCCeEEEEeCCCc--e----eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-
Q 016457           43 EIVPK-NDWSLMAVSLSTNVVKLYSPVTG--Q----YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-  114 (389)
Q Consensus        43 ~~~~~-~~~~~l~~~~~d~~i~iw~~~~~--~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  114 (389)
                      ++..+ |.+++|++|+.||.|++|++...  +    .+..++.|.+.|++++...++  +.|++++.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCc
Confidence            34444 45578999999999999997542  1    366788899999999999888  79999999999999999877 


Q ss_pred             -eEEEEEEcCCCCeEEEEE-eCCCCeEEEeecCCeEEEEECcCC--ceeeeee--------ecccCCeeEEEEecCCCCe
Q 016457          115 -HEVWSVTAGSQEIFCFSF-GGSTDYLLAAGCGSQIQFWDWRNK--KQVACLE--------ESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       115 -~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~--------~~~~~~v~~~~~~~~~~~~  182 (389)
                       -++.++..|.+.|.|+++ -++...+++||.|+.|.+||+.++  +.+.++.        .++..+|++++.++.+ ..
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TI  185 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eE
Confidence             678889999999999999 656666777777999999999977  2232222        2678899999999999 49


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD  262 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  262 (389)
                      |++|+..+.+++||.++.    +.+..+.+|...|..+..+ ++|..+++++.||+|++||+...+++.++..       
T Consensus       186 ivsGgtek~lr~wDprt~----~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-------  253 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTC----KKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIV-------  253 (735)
T ss_pred             EEecCcccceEEeccccc----cceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEe-------
Confidence            999999999999999965    4567777999999999999 8999999999999999999999999999987       


Q ss_pred             CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                           |...++++..+|+-.  ++.+|+.||.|+.=|+.+...      ...+. ....+|..+         ..+.+..
T Consensus       254 -----H~e~VWaL~~~~sf~--~vYsG~rd~~i~~Tdl~n~~~------~tlic-k~daPv~~l---------~~~~~~~  310 (735)
T KOG0308|consen  254 -----HKEGVWALQSSPSFT--HVYSGGRDGNIYRTDLRNPAK------STLIC-KEDAPVLKL---------HLHEHDN  310 (735)
T ss_pred             -----ccCceEEEeeCCCcc--eEEecCCCCcEEecccCCchh------heEee-cCCCchhhh---------hhccccC
Confidence                 668899999999888  889999999999999988543      12222 344556666         4443333


Q ss_pred             eEEEecCCCeEEEEeccCC
Q 016457          343 FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~~~  361 (389)
                      -+.+++.|+.|+-|.....
T Consensus       311 ~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  311 SVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             CceeeeccccceecCCccc
Confidence            3366777888888887644

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=5.9e-31  Score=215.69  Aligned_cols=262  Identities=16%  Similarity=0.129  Sum_probs=207.1

Q ss_pred             eecCcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc----------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           35 NFGDDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG----------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        35 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      +.+.+.|+.+.+-|+. .++|+++..+.|.|||..+-          .+-..+.+|.+.=.+++|++... -.|++++.|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccCC
Confidence            3447889999999977 56777788999999997542          12236788998888899998765 589999999


Q ss_pred             CeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCCeEE-EeecCCeEEEEECcC--CceeeeeeecccCCeeEE
Q 016457          104 GTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTDYLL-AAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQV  173 (389)
Q Consensus       104 g~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~  173 (389)
                      ++|++||+...       .+...+.+|...|..++|++....++ +++.|+.+.|||+|+  .++..... +|...|.|+
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~  278 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV  278 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence            99999999743       34567889999999999998766555 456699999999994  45555565 899999999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          174 HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      +|+|.+.++||+|+.|++|.+||+|.   ...++..+..|...|..|.|+|.....|++++.|+.+.+||+..-...+.-
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRn---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRN---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechh---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            99999988999999999999999994   456889999999999999999888899999999999999998642221110


Q ss_pred             ec-ccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          254 EN-ARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       254 ~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .. ....+.. --.-+|...|..+.|+|+... .|++.++|+.+.||.+..
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW-~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW-TIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCe-EEEEecCCceEEEeeccc
Confidence            00 0000000 001138899999999999874 478899999999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-31  Score=225.38  Aligned_cols=324  Identities=15%  Similarity=0.194  Sum_probs=249.4

Q ss_pred             ccccCCCCeEEEEecCc--------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCc
Q 016457           14 SQSCDNVNSIKRFGLKN--------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSST   82 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~   82 (389)
                      .-|++.||.|++|+..+        .+..++. .+.|+.++...+++.|++++.|.+|++|+...+  -++.++..|.+-
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY  119 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY  119 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence            67899999999999853        2344555 899999999999999999999999999999877  567788899999


Q ss_pred             EEEEEE-eCCCCCCEEEEEecCCeEEEEEccCC--eEEEE--------EE-cCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           83 VNQISF-SGPSTPHVLHSCSSDGTIRAWDTRSF--HEVWS--------VT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        83 v~~i~~-~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--------~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      |.|+++ .++.  .++||||.|+.|.+||++++  +.+.+        +. ++...|.+++.++.+..+++|+..+.|++
T Consensus       120 Vkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  120 VKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL  197 (735)
T ss_pred             heeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence            999999 6666  79999999999999999977  22222        22 66889999999988877777788999999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      ||.++.+.+..+. +|...|.++..+++|. .+++++.||+|++||+.    .+.++..+..|...|.++..+ ++-..+
T Consensus       198 wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~-~sf~~v  270 (735)
T KOG0308|consen  198 WDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSS-PSFTHV  270 (735)
T ss_pred             eccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeC-CCcceE
Confidence            9999999999999 9999999999999995 99999999999999999    567888899999999999998 788899


Q ss_pred             EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc-cccC
Q 016457          231 WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA-ATIG  309 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~  309 (389)
                      ++|+.||.|..=|+++......+..            ...++..+..+...+.+  -+++.|+.|+-|....... ...+
T Consensus       271 YsG~rd~~i~~Tdl~n~~~~tlick------------~daPv~~l~~~~~~~~~--WvtTtds~I~rW~~~~~~~l~~s~  336 (735)
T KOG0308|consen  271 YSGGRDGNIYRTDLRNPAKSTLICK------------EDAPVLKLHLHEHDNSV--WVTTTDSSIKRWKLEPDIALSVSG  336 (735)
T ss_pred             EecCCCCcEEecccCCchhheEeec------------CCCchhhhhhccccCCc--eeeeccccceecCCccccccccCC
Confidence            9999999999999998533333322            33667777777665643  5666788999997653221 0000


Q ss_pred             CCeEEEecccceeeeec-c-C---CC---cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          310 PPEAVLVGGHTAVVRSV-L-P---MP---SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       310 ~~~~~~~~~h~~~v~~~-~-~---~~---~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .+..... .-...+.+. . |   .+   .+..++.-.|.++++|=...|.+.+||+-..
T Consensus       337 ~~~~~~T-~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~  395 (735)
T KOG0308|consen  337 DLDFFST-DSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC  395 (735)
T ss_pred             CCCcccc-cCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence            0000000 000011110 0 0   01   1112245567889999999999999999765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.1e-29  Score=197.70  Aligned_cols=256  Identities=14%  Similarity=0.224  Sum_probs=206.3

Q ss_pred             eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeE
Q 016457           71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQI  148 (389)
Q Consensus        71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i  148 (389)
                      ++.+.+......|+++.|+++|  +++++++.|.+++|||..+++.++++..++..+..++|......++.++.  |.+|
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G--~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDG--LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccCCCceeEEEecCCC--CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            3445555567889999999999  79999999999999999999999999999899999999878888888877  8999


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      +..++.+++.++.+. +|...|++|+.+|-+. .+++++.|++|++||++..    .+...+...  .-..++|. |.|-
T Consensus        83 ryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~----~cqg~l~~~--~~pi~AfD-p~GL  153 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK----KCQGLLNLS--GRPIAAFD-PEGL  153 (311)
T ss_pred             EEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC----CCceEEecC--CCcceeEC-CCCc
Confidence            999999999999999 9999999999999995 9999999999999999943    222222222  23346777 7888


Q ss_pred             EEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          229 HLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      ++|++...+.|++||++..  .+..++.-..         +.......+.|+|||+  +|+.++..+.+++.|.-+|.. 
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~-  221 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTV-  221 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcE-
Confidence            8888888889999999864  3444444321         1346788999999999  888888999999999988775 


Q ss_pred             ccCCCeEEEeccccee--eeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457          307 TIGPPEAVLVGGHTAV--VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~  363 (389)
                           +..+. ++...  +.        +.+.|+||++++++|+.||+|.+|+++.+.+
T Consensus       222 -----~~tfs-~~~~~~~~~--------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  222 -----KSTFS-GYPNAGNLP--------LSATFTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             -----eeeEe-eccCCCCcc--------eeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence                 34443 33311  11        1237999999999999999999999987743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=8.4e-31  Score=200.59  Aligned_cols=267  Identities=15%  Similarity=0.150  Sum_probs=215.5

Q ss_pred             CccccCCCCeEEEEec--Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGL--KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ..-+|+.|.++.+|-.  ++.+-++.| .++|+|++.+-+.+.+++|+.|.+++|||+++|+.+..++ ...+|..+.|+
T Consensus        24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~  102 (327)
T KOG0643|consen   24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS  102 (327)
T ss_pred             EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence            3568999999999976  468888999 9999999999999999999999999999999999999998 56789999999


Q ss_pred             CCCCCCEEEEEe-----cCCeEEEEEcc-------CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           90 GPSTPHVLHSCS-----SDGTIRAWDTR-------SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        90 ~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      +++  ++++...     ..+.|.++|++       ..++...+..+.+.++.+-|.|-+..|+++..||.|.+||+++++
T Consensus       103 ~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  103 FGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             cCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence            998  4555543     34579999998       456688888889999999999999999999999999999999986


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                      .+..-...|...|+.|.++++.. ++++++.|.+-++||.++-.     +........+|++.+++|- .+.++.++...
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~-----v~Kty~te~PvN~aaisP~-~d~VilgGGqe  253 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLE-----VLKTYTTERPVNTAAISPL-LDHVILGGGQE  253 (327)
T ss_pred             eeeechhhhccccccccccCCcc-eEEecccCccceeeecccee-----eEEEeeecccccceecccc-cceEEecCCce
Confidence            65444347999999999999995 99999999999999999532     4444557789999999954 44555554432


Q ss_pred             cE--EEEEcCCCc------------eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          238 TL--SIWDWKDGQ------------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       238 ~i--~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      ..  .-=+.+.++            .+..+.+            |-++|++++|+|+|+  ..++|++||.|++..++..
T Consensus       254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkG------------HFGPINsvAfhPdGk--sYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG------------HFGPINSVAFHPDGK--SYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             eeeeeeecccccchhhhHHHHHHHHHhccccc------------cccCcceeEECCCCc--ccccCCCCceEEEEEeccc
Confidence            22  111122222            2223333            889999999999999  6699999999999877643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=9.5e-30  Score=194.20  Aligned_cols=255  Identities=14%  Similarity=0.176  Sum_probs=219.5

Q ss_pred             CCccccCCCCeEEEEecCcee--ee--eec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           12 PKSQSCDNVNSIKRFGLKNSI--QT--NFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~~~--~~--~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      .+.++++.|+++++|++...-  ..  ..+ .+.|-.++|+|. ..+|++++.|.+|++||+..+++........+.| .
T Consensus        33 ~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~  111 (313)
T KOG1407|consen   33 TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-N  111 (313)
T ss_pred             ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-E
Confidence            367889999999999986431  11  223 678889999874 4789999999999999999999998887655555 4


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +.|+|++  ++++.++.|..|.+.|.++.+.+...+. ...+..++|+-++..++.....|.|.|.....-+++++++ +
T Consensus       112 i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-A  187 (313)
T KOG1407|consen  112 ITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-A  187 (313)
T ss_pred             EEEcCCC--CEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-c
Confidence            8899999  7999999999999999999888877765 4678889998666777777778999999999999999999 9


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      |.....||.|+|+|+ +|++|+.|..+.+||+.    +..+.+.+..+.-+|..+.|+ .++++|++++.|..|-|=+++
T Consensus       188 H~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRTlSFS-~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  188 HPSNCICIEFDPDGR-YFATGSADALVSLWDVD----ELICERCISRLDWPVRTLSFS-HDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             CCcceEEEEECCCCc-eEeeccccceeeccChh----HhhhheeeccccCceEEEEec-cCcceeeccCccceEEeEecc
Confidence            999999999999997 99999999999999999    556778888899999999999 899999999999999999999


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA  292 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d  292 (389)
                      +|..+..+.             +.++...++|+|...  +||-+..|
T Consensus       262 tGd~~~eI~-------------~~~~t~tVAWHPk~~--LLAyA~dd  293 (313)
T KOG1407|consen  262 TGDRVWEIP-------------CEGPTFTVAWHPKRP--LLAYACDD  293 (313)
T ss_pred             cCCeEEEee-------------ccCCceeEEecCCCc--eeeEEecC
Confidence            999998887             668899999999876  56554443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.3e-30  Score=216.72  Aligned_cols=267  Identities=16%  Similarity=0.214  Sum_probs=211.2

Q ss_pred             CccccCCCCeEEEEecCc------eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee----------
Q 016457           13 KSQSCDNVNSIKRFGLKN------SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG----------   74 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~----------   74 (389)
                      +..+++.|-+|++||...      ..+.+..  ...|++++|++.|..|++.+.....+|+|-...+.+.          
T Consensus       181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D  260 (641)
T KOG0772|consen  181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD  260 (641)
T ss_pred             eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhh
Confidence            567899999999999863      2333333  7789999999999988888888999999954322221          


Q ss_pred             --eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEc-----CCCCeEEEEEeCCCCeEEEeecCC
Q 016457           75 --ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTA-----GSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        75 --~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                        ..+||...++|.+|+|... +.++|++.||++||||+...+ .+..++.     ..-+++.++|+|++..+++++.||
T Consensus       261 m~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  261 MYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             hhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence              2368999999999999987 789999999999999998643 3333332     256789999999999999999999


Q ss_pred             eEEEEECcCC--ceeeeeeecccC--CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cCCceeeE
Q 016457          147 QIQFWDWRNK--KQVACLEESHVE--DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VGTSVGKV  220 (389)
Q Consensus       147 ~i~iwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~  220 (389)
                      .|.+|+.+..  .+...+..+|..  .|+||.|+++|. +|++-+.|+++++||++..   .+++....+  ...+-+.+
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~---kkpL~~~tgL~t~~~~tdc  415 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF---KKPLNVRTGLPTPFPGTDC  415 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc---ccchhhhcCCCccCCCCcc
Confidence            9999998643  344555567877  899999999995 9999999999999999943   344444333  33456789


Q ss_pred             EEecCCCcEEEEEec------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          221 GFFGETNKHLWCLTH------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      +|+ |+.+++++|+.      .+.+.+||..+...+..+..            ....|..+.|+|.-+  -|+.|+.||.
T Consensus       416 ~FS-Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i------------~~aSvv~~~WhpkLN--Qi~~gsgdG~  480 (641)
T KOG0772|consen  416 CFS-PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI------------STASVVRCLWHPKLN--QIFAGSGDGT  480 (641)
T ss_pred             ccC-CCceEEEecccccCCCCCceEEEEeccceeeEEEecC------------CCceEEEEeecchhh--heeeecCCCc
Confidence            999 67788888864      36899999999888888775            337899999999877  5678889999


Q ss_pred             EEEEE
Q 016457          295 VGYFP  299 (389)
Q Consensus       295 i~i~~  299 (389)
                      ++||=
T Consensus       481 ~~vyY  485 (641)
T KOG0772|consen  481 AHVYY  485 (641)
T ss_pred             eEEEE
Confidence            99873

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.1e-30  Score=200.79  Aligned_cols=242  Identities=16%  Similarity=0.195  Sum_probs=202.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .++|++++.+  +.++|+|+.|.+|+|||+.+...+..+..|.+.|+++.|.+..+...|++|+.||.|.+|+......+
T Consensus        43 ~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~  120 (362)
T KOG0294|consen   43 AGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL  120 (362)
T ss_pred             ccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence            7889999984  68999999999999999999999999999999999999998874458999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      .+++.|.+.|+.++.+|.+..-++.+.|+.+++||+-+++.-..+.  -...-+.+.|+|.|. +++.+..+ .|-+|.+
T Consensus       121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~  196 (362)
T KOG0294|consen  121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGD-HFVVSGRN-KIDIYQL  196 (362)
T ss_pred             eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCC-EEEEEecc-EEEEEec
Confidence            9999999999999999999999999999999999999988766665  223345599999996 77777755 6889988


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY  277 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (389)
                      .+.    . +......+..+.++.|  .++..|++|+.|+.|.+||..+..+...+..            |...|-++.+
T Consensus       197 d~A----~-v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A------------H~~RVK~i~~  257 (362)
T KOG0294|consen  197 DNA----S-VFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLA------------HENRVKDIAS  257 (362)
T ss_pred             ccH----h-Hhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeec------------chhheeeeEE
Confidence            842    1 2222222345666666  4667899999999999999999888888887            7799999885


Q ss_pred             cCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          278 PGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      -.+...-||++.+.||.|++||++...
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEccccc
Confidence            544333399999999999999998763

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=2.6e-30  Score=211.93  Aligned_cols=258  Identities=19%  Similarity=0.272  Sum_probs=211.3

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe----------EEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCe
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH----------EVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQ  147 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  147 (389)
                      |.+.|+.+.+.|... .++++.+..+.|.|||..+..          +-..+.+|...-.+++|++.. ..+++++.|+.
T Consensus       123 h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             CCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            888999999999874 788889999999999986421          223788898778889998764 56777778999


Q ss_pred             EEEEECcCCc-------eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          148 IQFWDWRNKK-------QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       148 i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                      |++||+....       +...+. +|...|..++|++...++|++++.|+.+.|||+|++  ..+......+|...+.++
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             EEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEE
Confidence            9999997542       234454 899999999999998889999999999999999973  456677778899999999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      +|+|.++.+||+|+.|++|.+||+++. ++++++.+            |...|..+.|+|+... .|++++.|+.+.|||
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~------------H~dev~~V~WSPh~et-vLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG------------HEDEVFQVEWSPHNET-VLASSGTDRRLNVWD  345 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCceeccC------------CCcceEEEEeCCCCCc-eeEecccCCcEEEEe
Confidence            999989999999999999999999985 56777776            7799999999998776 589999999999999


Q ss_pred             eccCCcc------ccCCC-eEEEecccceeeeeccCCCcccCCCCCCCcee-EEEecCCCeEEEEeccCCc
Q 016457          300 VNYGGAA------TIGPP-EAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       300 ~~~~~~~------~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~~~~  362 (389)
                      +..-...      ..+++ +..+-.||...|.++         .|+|...+ |+|.++|+.+.||+.....
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df---------sWnp~ePW~I~SvaeDN~LqIW~~s~~i  407 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF---------SWNPNEPWTIASVAEDNILQIWQMAENI  407 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccc---------cCCCCCCeEEEEecCCceEEEeeccccc
Confidence            9753321      11222 223446999999999         88888765 7888999999999998663

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=7.2e-30  Score=219.45  Aligned_cols=280  Identities=17%  Similarity=0.271  Sum_probs=229.8

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee--eeecCCCCcEEE-EEEeCCCCCCEEEEEecCCeEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS--GECKGHSSTVNQ-ISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~-i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      ...+.+ +..|..+++.+.. .+++++.||++++|+-..++.+  ..+.+|.+.|.. +++.+... ..+++|+.|.+|.
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~-~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK-GRLVVGGMDTTII   84 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC-cceEeecccceEE
Confidence            345566 7778888877655 7899999999999997655544  346778888877 88876321 4799999999999


Q ss_pred             EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      +|.+.+..++.++++|+..|.|+... ....+++++.|.++++|-.  +++...+. +|+..|.+++.-|++  .++||+
T Consensus        85 v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~--~~vTgs  158 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLKGHKSNVCSLSIG-EDGTLISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPEN--TYVTGS  158 (745)
T ss_pred             EEecCCCCchhhhhccccceeeeecC-CcCceEecccccceEEecc--hhhhcccC-CcchheeeeeecCCC--cEEecc
Confidence            99999999999999999999999977 4455899999999999974  55666677 999999999999986  799999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      .|.+|++|.-.      ..+..+.+|.+.|+.+++. ++ ..+++++.||.|++|++ +++++..+.+            
T Consensus       159 aDKtIklWk~~------~~l~tf~gHtD~VRgL~vl-~~-~~flScsNDg~Ir~w~~-~ge~l~~~~g------------  217 (745)
T KOG0301|consen  159 ADKTIKLWKGG------TLLKTFSGHTDCVRGLAVL-DD-SHFLSCSNDGSIRLWDL-DGEVLLEMHG------------  217 (745)
T ss_pred             CcceeeeccCC------chhhhhccchhheeeeEEe-cC-CCeEeecCCceEEEEec-cCceeeeeec------------
Confidence            99999999876      5688889999999999998 33 36899999999999999 7888888887            


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      |...+.++...++++  .++++++|++++||+...  .      .+.+. -....|+++         .+-++|.. ++|
T Consensus       218 htn~vYsis~~~~~~--~Ivs~gEDrtlriW~~~e--~------~q~I~-lPttsiWsa---------~~L~NgDI-vvg  276 (745)
T KOG0301|consen  218 HTNFVYSISMALSDG--LIVSTGEDRTLRIWKKDE--C------VQVIT-LPTTSIWSA---------KVLLNGDI-VVG  276 (745)
T ss_pred             cceEEEEEEecCCCC--eEEEecCCceEEEeecCc--e------EEEEe-cCccceEEE---------EEeeCCCE-EEe
Confidence            779999999777777  889999999999998873  2      34443 334467777         44455553 788


Q ss_pred             cCCCeEEEEeccCC
Q 016457          348 GEDGRLCCWLSDDS  361 (389)
Q Consensus       348 ~~dg~v~iW~~~~~  361 (389)
                      +.||.||||..+..
T Consensus       277 ~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  277 GSDGRVRVFTVDKD  290 (745)
T ss_pred             ccCceEEEEEeccc
Confidence            88999999999855

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=206.38  Aligned_cols=266  Identities=14%  Similarity=0.158  Sum_probs=227.0

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      +...+++.|..+.++|..  +.+.++.| ...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~  311 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL  311 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence            567788899899999874  57788888 889999999999999999999999999999888888888899999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +|.+  +||++++.||+..+.|++++..+......  .-.+++.+|+|+|-.+.++..|+.|+|||+.++..+..|. +|
T Consensus       312 h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-gh  388 (506)
T KOG0289|consen  312 HPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GH  388 (506)
T ss_pred             ccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CC
Confidence            9999  79999999999999999999988776652  3568999999998888888889999999999999999998 89


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      .++|..++|+.+| ++|++++.|+.|++||+|...    ....+. .....+.++.|. ..|.+|+.++.|=.|++++-.
T Consensus       389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD-~SGt~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFD-QSGTYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEc-CCCCeEEeecceeEEEEEecc
Confidence            9999999999999 699999999999999999432    222222 223479999998 889999999887777777633


Q ss_pred             --CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          246 --DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       246 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                        +..++..+..            |.+..+.+.|....+  ++++++.|..++++.+
T Consensus       463 ~k~W~~~~~~~~------------~sg~st~v~Fg~~aq--~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  463 TKSWTEIKELAD------------HSGLSTGVRFGEHAQ--YLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceeeehhhh------------cccccceeeecccce--EEeeccchhheEEeec
Confidence              3455555554            667888999998888  9999999999888764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=222.00  Aligned_cols=307  Identities=15%  Similarity=0.192  Sum_probs=251.4

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEE
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQIS   87 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~   87 (389)
                      ..|-+..+|+|.++|++  +.+.+++. .+.|++++|.-||. .+|+|+..|.+.+||++..+.+..+. .|.+.|....
T Consensus       216 VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~  295 (910)
T KOG1539|consen  216 VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT  295 (910)
T ss_pred             EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence            46678889999999986  68888888 69999999999995 66777778999999999877776655 6888888888


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCC-----------------------------------------------------
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSF-----------------------------------------------------  114 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------------------------------  114 (389)
                      |.|..  ..+++++.|+.+++|=.+++                                                     
T Consensus       296 fl~~e--pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l  373 (910)
T KOG1539|consen  296 FLPGE--PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQEL  373 (910)
T ss_pred             ecCCC--ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence            88777  68888888888887744321                                                     


Q ss_pred             ------------------------------------------------eEEEEEE-----------cC------CCCeEE
Q 016457          115 ------------------------------------------------HEVWSVT-----------AG------SQEIFC  129 (389)
Q Consensus       115 ------------------------------------------------~~~~~~~-----------~~------~~~v~~  129 (389)
                                                                      ....+++           .+      ...+++
T Consensus       374 ~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~a  453 (910)
T KOG1539|consen  374 GQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATA  453 (910)
T ss_pred             cccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEE
Confidence                                                            0000000           01      246788


Q ss_pred             EEEeCCCCeEEEeecCCeEEEEECcCCceeeee--eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457          130 FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL--EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (389)
                      ++.++.|+..+.|.+.|.|-+|++.+|-...++  ...|..+|+.++....++ .+++++.+|.+.+||.....     +
T Consensus       454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~-----l  527 (910)
T KOG1539|consen  454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV-----L  527 (910)
T ss_pred             EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc-----e
Confidence            999988999999999999999999999888887  237999999999999886 99999999999999999532     3


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      .........+..+.++ .....++++..|-.|.++|..+.+.++.|.+            |.+.|++++|||||+  ||+
T Consensus       528 ~~~l~l~~~~~~iv~h-r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~Dgr--Wli  592 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYH-RVSDLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGR--WLI  592 (910)
T ss_pred             eeeeccCCCcceeeee-ehhhhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCc--EEE
Confidence            3334456778888888 6667899999999999999999999999998            779999999999999  999


Q ss_pred             EecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC-CeEEEEecc
Q 016457          288 GGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED-GRLCCWLSD  359 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~v~iW~~~  359 (389)
                      +++.|++|++||+.++.+      +..+.  -..+...+         .|||+|.+|||...| .-|++|.-.
T Consensus       593 sasmD~tIr~wDlpt~~l------ID~~~--vd~~~~sl---------s~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  593 SASMDSTIRTWDLPTGTL------IDGLL--VDSPCTSL---------SFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EeecCCcEEEEeccCcce------eeeEe--cCCcceee---------EECCCCCEEEEEEecCceEEEEEch
Confidence            999999999999999876      44432  34667777         999999999999988 679999754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=198.87  Aligned_cols=305  Identities=11%  Similarity=0.117  Sum_probs=225.5

Q ss_pred             eEEEEecCc-------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee--eeeec--CCCCcEEEEEEe
Q 016457           22 SIKRFGLKN-------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY--SGECK--GHSSTVNQISFS   89 (389)
Q Consensus        22 ~i~~w~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~--~~~~~v~~i~~~   89 (389)
                      .++-|+.++       .+..+++ .+.|++++|+.||++||+++.|++|+||++.+...  ...++  -.-+.-+.++|.
T Consensus        62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA  141 (420)
T ss_pred             chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence            355566543       2345666 89999999999999999999999999999876321  11111  122346789999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCC---eEEE---------EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSF---HEVW---------SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      ||-+ ..+++.-...++++|.+...   ....         --+.|.-.+..+-....+.++++++.|..|.+||++ |+
T Consensus       142 pDc~-s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  142 PDCK-SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CCcc-eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence            9985 56666667778999987532   1111         111235566667776567788888889999999998 99


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC----CCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI----NDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      .+..+. .....-+..+.+|+|+ ++++++----|++|..--.+    ++-..+.++.+|.+.|..++|+ ++...+++.
T Consensus       220 ~L~~id-tnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtv  296 (420)
T KOG2096|consen  220 LLQSID-TNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTV  296 (420)
T ss_pred             eeeeec-cccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEE
Confidence            999887 6667778889999997 99999888889999975221    2334566788999999999999 788899999


Q ss_pred             ecCCcEEEEEcCCC-------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          234 THIETLSIWDWKDG-------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       234 ~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      +.||++++||+.-.       +.++......   .     ........+..+|.|+  .|+. +....|++|..++++. 
T Consensus       297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl---~-----aag~~p~RL~lsP~g~--~lA~-s~gs~l~~~~se~g~~-  364 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPL---H-----AAGSEPVRLELSPSGD--SLAV-SFGSDLKVFASEDGKD-  364 (420)
T ss_pred             ecCCcEEEeeccceEecCCCchHhhcCCcch---h-----hcCCCceEEEeCCCCc--EEEe-ecCCceEEEEcccCcc-
Confidence            99999999997521       2222221100   0     0123445899999998  4443 3556799999998776 


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                           ...++..|...|.++         +|+++|++++|+| |..+++..-
T Consensus       365 -----~~~~e~~h~~~Is~i---------s~~~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  365 -----YPELEDIHSTTISSI---------SYSSDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             -----chhHHHhhcCceeeE---------EecCCCcEEeeec-ceeeeeecC
Confidence                 566777899999999         9999999999999 788998873

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.2e-29  Score=227.21  Aligned_cols=274  Identities=15%  Similarity=0.155  Sum_probs=223.8

Q ss_pred             CCccccC--CCCeEEEEecCce--------------eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-----
Q 016457           12 PKSQSCD--NVNSIKRFGLKNS--------------IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-----   69 (389)
Q Consensus        12 ~~~~s~~--~~~~i~~w~~~~~--------------~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-----   69 (389)
                      -..||++  .|+.+++|+....              +.+... .+.|+|+.|+|||++||+|++|+.|.||....     
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~  105 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT  105 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence            3577888  8889999996421              222222 78999999999999999999999999998662     


Q ss_pred             -------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           70 -------------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        70 -------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                                   .+.+..+.+|...|.+++|+|++  .+|++++.|++|.|||..+.+.+..+++|.+.|..+.|.|-|
T Consensus       106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G  183 (942)
T KOG0973|consen  106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG  183 (942)
T ss_pred             cccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence                         13566788999999999999999  799999999999999999999999999999999999999999


Q ss_pred             CeEEEeecCCeEEEEECcCCceeeeeeec-----ccCCeeEEEEecCCCCeEEEEeC----CCcEEEEecCCCCCCCccc
Q 016457          137 DYLLAAGCGSQIQFWDWRNKKQVACLEES-----HVEDVTQVHFVPNNQNKVVSASV----DGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~  207 (389)
                      +++++-+.|++|++|++.+....+.+...     ....+..+.|+|+|. +|++...    -..+.|.+-.+    .+.-
T Consensus       184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~t----Wk~~  258 (942)
T KOG0973|consen  184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGT----WKVD  258 (942)
T ss_pred             CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCC----ceee
Confidence            99999999999999998776666665521     234578899999996 8887643    23467776653    3445


Q ss_pred             eeeeccCCceeeEEEecC-----C-------C----cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          208 ESVINVGTSVGKVGFFGE-----T-------N----KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~-----~-------~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      ..+.+|..++..+.|+|.     .       .    ..+++|+.|++|.||.....+++......           ....
T Consensus       259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-----------f~~S  327 (942)
T KOG0973|consen  259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-----------FNKS  327 (942)
T ss_pred             eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh-----------hcCc
Confidence            677899999999999851     1       1    16889999999999999877777655432           3378


Q ss_pred             eeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      |.+++|+|||-  -|+++|.||+|.++.++..++
T Consensus       328 I~DmsWspdG~--~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  328 IVDMSWSPDGF--SLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             eeeeeEcCCCC--eEEEEecCCeEEEEEcchHHh
Confidence            99999999998  678899999999999987655

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=197.88  Aligned_cols=279  Identities=17%  Similarity=0.223  Sum_probs=229.9

Q ss_pred             cCCCCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeC------CC--------
Q 016457            7 ESQSQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSP------VT--------   69 (389)
Q Consensus         7 ~~~~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~------~~--------   69 (389)
                      ...-+|...+++.|.+-++|.+.  .++.++.| .+.|++++|++.+.++++++.|++..||..      ..        
T Consensus       156 a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS  235 (481)
T KOG0300|consen  156 ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS  235 (481)
T ss_pred             hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence            34456788899999999999986  68888988 999999999999999999999999999962      10        


Q ss_pred             ----------------------c----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457           70 ----------------------G----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG  123 (389)
Q Consensus        70 ----------------------~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  123 (389)
                                            +    -++..+.+|...|.+..|...+  +.++++++|.+..+||+++++.+..+.+|
T Consensus       236 sEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVEtge~v~~LtGH  313 (481)
T KOG0300|consen  236 SEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVETGEVVNILTGH  313 (481)
T ss_pred             chhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeeccCceeccccCc
Confidence                                  0    1345678899999999999888  79999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457          124 SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN  202 (389)
Q Consensus       124 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (389)
                      ....+.++-+|....+++++.|.+.++||++.. ..+..|+ +|...|+++.|.-+.  .+++|+.|.+|++||+++.  
T Consensus       314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNM--  388 (481)
T KOG0300|consen  314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNM--  388 (481)
T ss_pred             chhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCC--ceeecCCCceEEEeeeccc--
Confidence            999999999988888888888999999999844 3456677 999999999999885  6999999999999999943  


Q ss_pred             CCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457          203 DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (389)
                       ..++. .....++++.++.+ ..+..++.--.+..|++||+... .+..+...       -..+|...|.+++|..+..
T Consensus       389 -RsplA-TIRtdS~~NRvavs-~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrt-------sRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  389 -RSPLA-TIRTDSPANRVAVS-KGHPIIAIPHDNRQVRLFDLNGN-RLARLPRT-------SRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             -cCcce-eeecCCccceeEee-cCCceEEeccCCceEEEEecCCC-ccccCCcc-------cccccceeeeeeeccccCc
Confidence             23333 33467899999998 67778888888889999999744 33333310       0113778999999988765


Q ss_pred             eEEEEEecCCceEEEEEeccC
Q 016457          283 NLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       283 ~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      -.-|++++.|..+.-|.+...
T Consensus       458 ~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccccceeeeeEeccc
Confidence            335789999999999998753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=4.2e-29  Score=214.76  Aligned_cols=258  Identities=17%  Similarity=0.223  Sum_probs=218.0

Q ss_pred             CccccCCCCeEEEEecCc----eeeeeec-CcceEE-EeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           13 KSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFE-IVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~-~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      ...+++.|+++++|+-..    ....+.+ .+-|.+ ++|-+ ++-.+++|+.|++|.+|......++..+.+|...|.+
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~  106 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS  106 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence            356788999999999742    2233444 555555 67664 5557999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +....++   .++||++|.++++|-.  +++...+++|...|++++.-|.+ .+++++.|.+|++|.-  ++.++++. +
T Consensus       107 ls~~~~~---~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-g  177 (745)
T KOG0301|consen  107 LSIGEDG---TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-G  177 (745)
T ss_pred             eecCCcC---ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-c
Confidence            9987776   5999999999999976  56667799999999999998666 8999999999999984  78899998 9


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      |.+-|+.+++-+++  .|++++.||.|+.|++..     ..+....+|...+.++... .++..++++++|++++||+..
T Consensus       178 HtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  178 HTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             chhheeeeEEecCC--CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecC
Confidence            99999999999985  699999999999999963     5688899999999999976 566789999999999999976


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                        .+.+.+.-+            ...++++.+-++|+   |++|+.||.||||.....+
T Consensus       250 --e~~q~I~lP------------ttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  250 --ECVQVITLP------------TTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             --ceEEEEecC------------ccceEEEEEeeCCC---EEEeccCceEEEEEecccc
Confidence              566666531            25899999999997   6789999999999887443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=2e-29  Score=209.30  Aligned_cols=256  Identities=14%  Similarity=0.247  Sum_probs=222.0

Q ss_pred             CCCeEEEEecCc-----eeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCcEEEEEE
Q 016457           19 NVNSIKRFGLKN-----SIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSSTVNQISF   88 (389)
Q Consensus        19 ~~~~i~~w~~~~-----~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~   88 (389)
                      ..|.|++||+.+     ++..+..   +..|+++.+.|||+.|++|+.-.++.|||+...  .....+....-...+++.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~  517 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  517 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence            458899999863     4444443   788999999999999999999999999998754  333344444456788999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +||.  ++.++++.||.|.|||+.+...++.|++|.+.+.||.++++|..|.++|-|++|+.||++++..+++..  ..+
T Consensus       518 spDa--kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~S  593 (705)
T KOG0639|consen  518 SPDA--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSS  593 (705)
T ss_pred             CCcc--ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhh
Confidence            9999  799999999999999999999999999999999999999999999999999999999999999888775  678


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      .|.++-..|++. +++.|-.++.+-+......     ....+..|++.|.++.|. ..|+++++.+.|+.+..|...-|.
T Consensus       594 QIfSLg~cP~~d-WlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa-~cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  594 QIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             hheecccCCCcc-ceeeecccCcEEEEecCCc-----cceeecccccEEEEEEec-ccCceeeecCchhhhhhccCcccc
Confidence            899999999996 9999999999998887732     244555688999999999 889999999999999999998888


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      .+....             ....|.+|.++.|++  ||++|+.|....||.+
T Consensus       667 siFqsk-------------E~SsVlsCDIS~ddk--yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  667 SIFQSK-------------ESSSVLSCDISFDDK--YIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceeecc-------------ccCcceeeeeccCce--EEEecCCCcceEEEEE
Confidence            777666             347899999999998  9999999988888876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=2.6e-29  Score=208.57  Aligned_cols=284  Identities=11%  Similarity=0.159  Sum_probs=229.3

Q ss_pred             eeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecC--CCCcEEEEEEeCCCCCCEEEEEecCCeE
Q 016457           32 IQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKG--HSSTVNQISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      +.++.+.+-|.++..+...+.+++|+ .|.|+|||+...   .++..+..  ...-|.++...|++  ..|++|+.-.++
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg--rtLivGGeastl  489 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG--RTLIVGGEASTL  489 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC--ceEEecccccee
Confidence            44555577888899999999999998 688999998642   23333332  45679999999999  799999999999


Q ss_pred             EEEEccCCeEEEEEEc--CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          107 RAWDTRSFHEVWSVTA--GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      .|||+....+....+.  ..-...+++.+|+.+..++++.||.|.|||+++...++.|+ +|.+.+.||.++++|. .|.
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGt-klW  567 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGT-KLW  567 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCc-eee
Confidence            9999987655433332  23567788999999999999999999999999999999999 9999999999999995 999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      +|+-|++|+.||++.+..    +. .....+.|.++.++ |.+++|++|-.++.+.+......+ .+.+..         
T Consensus       568 TGGlDntvRcWDlregrq----lq-qhdF~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~-kyqlhl---------  631 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQ----LQ-QHDFSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPE-KYQLHL---------  631 (705)
T ss_pred             cCCCccceeehhhhhhhh----hh-hhhhhhhheecccC-CCccceeeecccCcEEEEecCCcc-ceeecc---------
Confidence            999999999999995431    11 11235689999999 788999999999999888765433 223332         


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                         |+..|.++.|.+.|+  |+++.+.|..+..|...-+..      +.+.+  ....|.+.         .+|.|.+|+
T Consensus       632 ---heScVLSlKFa~cGk--wfvStGkDnlLnawrtPyGas------iFqsk--E~SsVlsC---------DIS~ddkyI  689 (705)
T KOG0639|consen  632 ---HESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGAS------IFQSK--ESSSVLSC---------DISFDDKYI  689 (705)
T ss_pred             ---cccEEEEEEecccCc--eeeecCchhhhhhccCccccc------eeecc--ccCcceee---------eeccCceEE
Confidence               789999999999999  999999999999998876543      34433  45677777         999999999


Q ss_pred             EEecCCCeEEEEec
Q 016457          345 WTGGEDGRLCCWLS  358 (389)
Q Consensus       345 ~s~~~dg~v~iW~~  358 (389)
                      +||+.|..-.+|.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999998888875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=202.19  Aligned_cols=249  Identities=16%  Similarity=0.238  Sum_probs=208.8

Q ss_pred             eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE----E---E-----------EcCCCCeEEEEEeC
Q 016457           73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW----S---V-----------TAGSQEIFCFSFGG  134 (389)
Q Consensus        73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~---~-----------~~~~~~v~~~~~~~  134 (389)
                      ...+..|.-+|.+++++|++  .+.++++.+++|.-|++.+++...    .   +           +.|...+.+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~--~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD--KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccc--cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            45567799999999999999  799999999999999998876331    1   0           25677899999999


Q ss_pred             CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC
Q 016457          135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG  214 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  214 (389)
                      ++.++++++.|..|.|||.++.+.++.+. +|.+.|.+++|-... +.+++++.|+.|++|++.    ....+..+.+|+
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~----~~s~vetlyGHq  286 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGT-SELYSASADRSVKVWSID----QLSYVETLYGHQ  286 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCc-cceeeeecCCceEEEehh----HhHHHHHHhCCc
Confidence            99999999999999999999999999998 999999999998766 599999999999999998    456788889999


Q ss_pred             CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      +.|.++... ..+..+.+|+.|+++++|++... ....|.+            +.+.+-+++|-.+.   .+++|+.+|.
T Consensus       287 d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~ee-sqlifrg------------~~~sidcv~~In~~---HfvsGSdnG~  349 (479)
T KOG0299|consen  287 DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEE-SQLIFRG------------GEGSIDCVAFINDE---HFVSGSDNGS  349 (479)
T ss_pred             cceeeechh-cccceEEeccccceeEEEecccc-ceeeeeC------------CCCCeeeEEEeccc---ceeeccCCce
Confidence            999999887 56677777889999999999543 3334554            55788899998765   5789999999


Q ss_pred             EEEEEeccCCccccCCCeEEEecccc-----------eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          295 VGYFPVNYGGAATIGPPEAVLVGGHT-----------AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       295 i~i~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |.+|++...+.      +......|.           ..|+++         +..|...++++|+.+|.||+|.+.+.
T Consensus       350 IaLWs~~KKkp------lf~~~~AHgv~~~~~~~~~~~Witsl---------a~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  350 IALWSLLKKKP------LFTSRLAHGVIPELDPVNGNFWITSL---------AVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EEEeeecccCc------eeEeeccccccCCccccccccceeee---------EecccCceEEecCCCCceEEEEecCC
Confidence            99999988765      444443443           256666         77788888999999999999999987

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-29  Score=188.65  Aligned_cols=249  Identities=17%  Similarity=0.240  Sum_probs=198.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      .+.|..+...-.|++||++++|++|+|+.+.+.   +++.++.||.++|..++|.....+.+|++++.||.|.||.-.++
T Consensus        11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g   90 (299)
T KOG1332|consen   11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG   90 (299)
T ss_pred             hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence            677888888889999999999999999998754   57888999999999999987433489999999999999998877


Q ss_pred             e--EEEEEEcCCCCeEEEEEeCCC--CeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecC---C------
Q 016457          115 H--EVWSVTAGSQEIFCFSFGGST--DYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPN---N------  179 (389)
Q Consensus       115 ~--~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~---~------  179 (389)
                      +  .......|...|++++|.|++  -.|+++++||.|.+.+.+..  -....+..+|.-.|++++|.|.   |      
T Consensus        91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~  170 (299)
T KOG1332|consen   91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG  170 (299)
T ss_pred             chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence            4  344566789999999998864  45666777999999998754  2233344489999999999987   3      


Q ss_pred             ----CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC---cEEEEEecCCcEEEEEcCCCce---
Q 016457          180 ----QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN---KHLWCLTHIETLSIWDWKDGQN---  249 (389)
Q Consensus       180 ----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~---  249 (389)
                          ...|++|+.|+.|+||+...+  ....-..+.+|.+.|+.++|.|..+   ..|++++.||++.||.......   
T Consensus       171 ~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  171 PAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             cccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence                136999999999999999864  2233344788999999999996543   4799999999999998762211   


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ...+..            ....+..+.|+..|+  +|+.++.|..|.+|.-..
T Consensus       249 ~tll~~------------f~~~~w~vSWS~sGn--~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  249 KTLLEE------------FPDVVWRVSWSLSGN--ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cccccc------------CCcceEEEEEecccc--EEEEecCCcEEEEEEeCC
Confidence            111111            337899999999999  889999999999997654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-29  Score=218.05  Aligned_cols=288  Identities=17%  Similarity=0.248  Sum_probs=226.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeeecC---CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGECKG---HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      .....+++.+++...|+.++ ...++||.++...    +...+..   -.-.+..+.|....+ ++|++++..|.|.+||
T Consensus        39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~-NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS-NLIATCSTNGVISVWD  116 (839)
T ss_pred             ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchh-hhheeecCCCcEEEEe
Confidence            56677888899998888888 4567888765431    1112111   112456788885443 7999999999999999


Q ss_pred             ccC---CeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          111 TRS---FHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       111 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      +..   .+.+..|..|...++++.|++....++. |+.||.|++||++..+...++. +....|+.++|+|...+.|+++
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEe
Confidence            986   5666789999999999999987766555 5559999999999999988888 7888999999999988899999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc--eeEEeecccccccCCc
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFENARSLASDSW  264 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~  264 (389)
                      .+.|.+.+||+|.   ......++..|.++|.++.|+ |++.+|++|+.|+.|+|||+.+.+  .+.++.          
T Consensus       196 ~dsG~lqlWDlRq---p~r~~~k~~AH~GpV~c~nwh-Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----------  261 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQ---PDRCEKKLTAHNGPVLCLNWH-PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----------  261 (839)
T ss_pred             cCCceEEEeeccC---chhHHHHhhcccCceEEEeec-CCCceeeecCCCccEEEEeccCCCccceeEEe----------
Confidence            9999999999993   456777888999999999999 589999999999999999998654  334444          


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEec--CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCC-CCc
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ-SHG  341 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~  341 (389)
                         ...++.++.|-|.... .|++++  .|-.|+|||+...-.     |...+. .|+..++.+         +|. .|-
T Consensus       262 ---Tiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYI-----P~~t~~-eH~~~vt~i---------~W~~~d~  322 (839)
T KOG0269|consen  262 ---TIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYI-----PYATFL-EHTDSVTGI---------AWDSGDR  322 (839)
T ss_pred             ---ecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccc-----cceeee-ccCccccce---------eccCCCc
Confidence               3378899999998763 466655  477999999997654     334554 899999999         442 344


Q ss_pred             eeEEEecCCCeEEEEeccCC
Q 016457          342 IFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       342 ~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..|.+++.||+|..-.++..
T Consensus       323 ~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  323 INLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeEeecCccHHHHhhhhcc
Confidence            56889999998877666644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1e-27  Score=186.82  Aligned_cols=249  Identities=16%  Similarity=0.182  Sum_probs=198.6

Q ss_pred             ccccCCCCeEEEEecCce---ee-eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           14 SQSCDNVNSIKRFGLKNS---IQ-TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~~---~~-~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      .+.+|-|++||+|++...   +. .... .++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..+|.++.|
T Consensus        43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~w  121 (347)
T KOG0647|consen   43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHW  121 (347)
T ss_pred             EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEE
Confidence            446788999999998642   11 1222 8999999999999999999999999999999995 4556679999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeeccc
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHV  167 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~  167 (389)
                      -+...-..|+||++|++|+.||.+...++.++... +.+.++..  ....++++..+..|.+|+++++... ..+...-+
T Consensus       122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk  198 (347)
T KOG0647|consen  122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLK  198 (347)
T ss_pred             ecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence            87663358999999999999999999999999885 78888887  4567788888999999999866432 22222344


Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---------CceeeEEEecCCCcEEEEEecCCc
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---------TSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      -.++||+..++.. ..+.|+-+|.+.|..+..+.+  ..-..+..|.         -.|++++|+| ....|++++.||+
T Consensus       199 ~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  199 WQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGT  274 (347)
T ss_pred             ceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCce
Confidence            5689999999986 679999999999999985422  2222233332         2578899994 6668999999999


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (389)
                      +.+||-.....++....            |..+|+++.|+.+|.
T Consensus       275 f~FWDkdar~kLk~s~~------------~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  275 FSFWDKDARTKLKTSET------------HPQPITCCSFNRNGS  306 (347)
T ss_pred             EEEecchhhhhhhccCc------------CCCccceeEecCCCC
Confidence            99999887777777665            679999999999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.2e-28  Score=189.23  Aligned_cols=281  Identities=12%  Similarity=0.137  Sum_probs=217.0

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  120 (389)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++|  ..|+|++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg--r~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG--RKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC--CEeeeecCCceeEEEeccCCCceeEE
Confidence            6799999999999999999999999999999888999999999999999999  79999999999999999999999999


Q ss_pred             EcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeee----ec-ccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          121 TAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE----ES-HVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       121 ~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      .. .++|+.+.|+|.+...++++- +..-.+.++..+  ++++.    .+ ....-.+..|.+.|+ ++++|...|.+.+
T Consensus       104 rf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 RF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLV  179 (405)
T ss_pred             Ec-cCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC-EEEEecCcceEEE
Confidence            87 599999999998776666554 444445554432  11111    00 111233456889895 9999999999999


Q ss_pred             EecCCCCCCCccceeeeccC-CceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-------c--eeEEeecccccccCCc
Q 016457          195 FDTGGDINDDDLLESVINVG-TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-------Q--NVASFENARSLASDSW  264 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~--~~~~~~~~~~~~~~~~  264 (389)
                      +|..+.    +++..+.... ..|..+.++ ..+.+|+..+.|..|+.|+++.-       +  +.+.+...-       
T Consensus       180 ~~a~t~----e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV-------  247 (405)
T KOG1273|consen  180 YDAETL----ECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV-------  247 (405)
T ss_pred             Eecchh----eeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH-------
Confidence            999953    4555554444 678889998 88899999999999999998631       1  112222211       


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecC-CceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCce
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                         ....-.+++|+.+|.  |+++|+. ...++||.-..|.+      +..+. |.. ....++         .|.|-..
T Consensus       248 ---Nk~~Wk~ccfs~dge--Yv~a~s~~aHaLYIWE~~~GsL------VKILh-G~kgE~l~DV---------~whp~rp  306 (405)
T KOG1273|consen  248 ---NKLQWKKCCFSGDGE--YVCAGSARAHALYIWEKSIGSL------VKILH-GTKGEELLDV---------NWHPVRP  306 (405)
T ss_pred             ---hhhhhhheeecCCcc--EEEeccccceeEEEEecCCcce------eeeec-CCchhheeec---------cccccee
Confidence               113345788999998  8777664 46799999998876      55565 554 677888         7888888


Q ss_pred             eEEEecCCCeEEEEeccCC
Q 016457          343 FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~~~  361 (389)
                      .+++- ..|.|++|.....
T Consensus       307 ~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  307 IIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeeec-cCCceEEEEeecc
Confidence            88888 5799999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.3e-28  Score=200.20  Aligned_cols=272  Identities=17%  Similarity=0.228  Sum_probs=213.8

Q ss_pred             CeEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           60 NVVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      ..+.+||+.+|....++++. ...-.++..-..   .+++++. ....|.+|.+...........-.++|.+++-+|.+.
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~---~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNN---EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhch---hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence            46999999999988888764 222222322222   3566654 445789999876554442222368899999998888


Q ss_pred             eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC-----CCCccceeeec
Q 016457          138 YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI-----NDDDLLESVIN  212 (389)
Q Consensus       138 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~  212 (389)
                      ++++++-.|.|++|.+.+|..+..+. +|...|+|+.|+.++. +|++|+.||.|.+|++..-.     ....++..+..
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~  172 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD  172 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence            88888789999999999999999997 9999999999999996 99999999999999986321     13456777888


Q ss_pred             cCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          213 VGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       213 ~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      |.-+|+.+...+. -...|++++.|.++++||+..+..+.++..             ...+.+++.+|-+.  .+..|+.
T Consensus       173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-------------p~si~av~lDpae~--~~yiGt~  237 (476)
T KOG0646|consen  173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-------------PSSIKAVALDPAER--VVYIGTE  237 (476)
T ss_pred             CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-------------CCcceeEEEccccc--EEEecCC
Confidence            9999999988632 346899999999999999999998888773             37789999999888  6789999


Q ss_pred             CceEEEEEeccCCc--c--------ccCCCeEEEecccce--eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          292 AGTVGYFPVNYGGA--A--------TIGPPEAVLVGGHTA--VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       292 dg~i~i~~~~~~~~--~--------~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      +|.|.+.++..-..  .        ..+..+..+. ||.+  .|+|+         +++-||..|++|+.||+|+|||+.
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcL---------ais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCL---------AISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEE---------EEecCccEEEeeCCCCCEEEEecc
Confidence            99999988764431  0        1122234444 8887  99999         999999999999999999999998


Q ss_pred             CC
Q 016457          360 DS  361 (389)
Q Consensus       360 ~~  361 (389)
                      ..
T Consensus       308 S~  309 (476)
T KOG0646|consen  308 SK  309 (476)
T ss_pred             hH
Confidence            65

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=4.3e-28  Score=206.75  Aligned_cols=294  Identities=17%  Similarity=0.193  Sum_probs=209.1

Q ss_pred             EEEeecCC---CCeEEEEecCCeEEEEeCCCcee------eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457           42 FEIVPKND---WSLMAVSLSTNVVKLYSPVTGQY------SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        42 ~~~~~~~~---~~~l~~~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      ++..|++.   ..+||.+..+|.|.++|....+.      +..+..|...|.++.|.|..  ..|++++.|.++++||+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge--~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE--SLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc--eeEEEccCCceeeeeeec
Confidence            44666652   35899999999999999765322      34566799999999999944  799999999999999999


Q ss_pred             CCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCce--------------------eeeee------
Q 016457          113 SFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQ--------------------VACLE------  163 (389)
Q Consensus       113 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~--------------------~~~~~------  163 (389)
                      ..+++..  +.+|...|.+++|.|.+..+++.|. ||.|.|||++-...                    ...+.      
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            9988877  8899999999999998887766555 99999999974320                    00000      


Q ss_pred             ecccCCeeE---EEEecCCCCeEEEEeC-CCcEEEEecCCCCCC----Cccceeeecc---CCceeeEEEecCCCcEEEE
Q 016457          164 ESHVEDVTQ---VHFVPNNQNKVVSASV-DGLICTFDTGGDIND----DDLLESVINV---GTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       164 ~~~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~----~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~  232 (389)
                      .++...|.+   +.+..|. +.|++++. |+.|++||++.....    ......+..+   ...+.++... ..|.+|++
T Consensus       211 kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD-ssGt~L~A  288 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD-SSGTYLFA  288 (720)
T ss_pred             ccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec-CCCCeEEE
Confidence            123334444   4444555 48888887 999999999954311    1111122222   2345566665 55788888


Q ss_pred             EecCCcEEEEEcCCCc--eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457          233 LTHIETLSIWDWKDGQ--NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP  310 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~  310 (389)
                      .+.|+.|++|++....  ++..+.+..          ....-..-..+|++.  ++++|+.|...++|.+.+.+.     
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~----------~~sf~vks~lSpd~~--~l~SgSsd~~ayiw~vs~~e~-----  351 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKL----------NSSFYVKSELSPDDC--SLLSGSSDEQAYIWVVSSPEA-----  351 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCcc----------cceeeeeeecCCCCc--eEeccCCCcceeeeeecCccC-----
Confidence            8889999999997642  333444322          112233456789998  999999999999999998765     


Q ss_pred             CeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccc
Q 016457          311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEIN  365 (389)
Q Consensus       311 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~  365 (389)
                      +...+ .||...|+++.+       +-++.+. ++++++|-.+++|++...+++.
T Consensus       352 ~~~~l-~Ght~eVt~V~w-------~pS~~t~-v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  352 PPALL-LGHTREVTTVRW-------LPSATTP-VATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             Chhhh-hCcceEEEEEee-------ccccCCC-ceeeccCcceEEEeccCchhhc
Confidence            23334 499999999921       1123333 4778999999999998776555

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=201.78  Aligned_cols=289  Identities=14%  Similarity=0.161  Sum_probs=230.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-eeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-YSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      +.+|.+|||+.+.+.||++-.+|.|.||++..+= ....+.+ ....|.+++|++.+   .|.+.+.+|.|.-||+.+++
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecccCc
Confidence            7899999999999999999999999999998752 2334444 45679999999655   89999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      +...+....+.|++++.+|.+..++.++.||.+..++...++...... ...++.+.++.|+|++. .+++|+.||.|++
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRI  180 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCceEEE
Confidence            999999889999999999999999999999988888877766543322 13568899999999994 8999999999999


Q ss_pred             EecCCCCCCCccceeeec----cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          195 FDTGGDINDDDLLESVIN----VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      ||..++.........+..    ...-|+++.|. .+ ..+++|...|+|.+||...+..++.+..            |..
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~------------h~a  246 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RD-STIASGDSAGTVTFWDSIFGTLIQSHSC------------HDA  246 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEe-ec-CcEEEecCCceEEEEcccCcchhhhhhh------------hhc
Confidence            999966422211111111    23357888887 33 3799999999999999999999988887            669


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      .|.+++..++++  .+++++.|+.|.-|...+.+....   .......|...|+++         +..++  .|++||.|
T Consensus       247 dVl~Lav~~~~d--~vfsaGvd~~ii~~~~~~~~~~wv---~~~~r~~h~hdvrs~---------av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  247 DVLALAVADNED--RVFSAGVDPKIIQYSLTTNKSEWV---INSRRDLHAHDVRSM---------AVIEN--ALISGGRD  310 (691)
T ss_pred             ceeEEEEcCCCC--eEEEccCCCceEEEEecCCcccee---eeccccCCcccceee---------eeecc--eEEeccee
Confidence            999999999988  778999999999998877643100   112224688888888         44444  67999999


Q ss_pred             CeEEEEeccC
Q 016457          351 GRLCCWLSDD  360 (389)
Q Consensus       351 g~v~iW~~~~  360 (389)
                      ..+.+=....
T Consensus       311 ~~l~i~~s~~  320 (691)
T KOG2048|consen  311 FTLAICSSRE  320 (691)
T ss_pred             eEEEEccccc
Confidence            9998876654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1.8e-26  Score=197.77  Aligned_cols=276  Identities=14%  Similarity=0.093  Sum_probs=202.7

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      +.+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++  ..+ ++++.++.|++||..+++.+..+..+ ..+..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccE
Confidence            578889999999999999999888887654 46789999998  555 67778999999999999888777665 34578


Q ss_pred             EEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccc
Q 016457          130 FSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLL  207 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~  207 (389)
                      ++|+|+++.+++++. ++.|++||+++.+.+..+.  +...+.+++|+|++. ++++++.++ .+.+||..+..    ..
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~----~~  150 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE----IV  150 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe----EE
Confidence            899999988877654 8999999999888777775  344578899999996 888877765 46778987432    22


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      ... .....+..++|+ ++++.|++ +..++.|++||+.+++.+..+........     ........++|+|+++.++ 
T Consensus       151 ~~~-~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~s~dg~~~~-  222 (300)
T TIGR03866       151 DNV-LVDQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-----PEAVQPVGIKLTKDGKTAF-  222 (300)
T ss_pred             EEE-EcCCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-----cccCCccceEECCCCCEEE-
Confidence            222 233455778998 66776654 45689999999999887776542110000     0012234688999998433 


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe-cCCCeEEEEeccCCc
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-GEDGRLCCWLSDDSS  362 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iW~~~~~~  362 (389)
                      ++.+.++.|.+||+.+++.      +..+.  +...+.++         +|+|+|++|+++ +.+|.|++||+....
T Consensus       223 ~~~~~~~~i~v~d~~~~~~------~~~~~--~~~~~~~~---------~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEV------LDYLL--VGQRVWQL---------AFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EEcCCCCeEEEEECCCCcE------EEEEE--eCCCcceE---------EECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            3344566899999987665      33333  34467777         999999999886 569999999998753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.4e-27  Score=185.69  Aligned_cols=292  Identities=15%  Similarity=0.214  Sum_probs=220.9

Q ss_pred             CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCcee------e----e-----eecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457           38 DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQY------S----G-----ECKGHSSTVNQISFSGPSTPHVLHSCS  101 (389)
Q Consensus        38 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~------~----~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~  101 (389)
                      .+.|+++...+ .|+++++|+.||.|.+||+++...      +    .     .-.+|.-.|..+.|.|-.. -.+.+++
T Consensus        43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmFtssS  121 (397)
T KOG4283|consen   43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMFTSSS  121 (397)
T ss_pred             CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-ceeeccc
Confidence            78899999987 579999999999999999975421      0    0     1145788899999999765 5899999


Q ss_pred             cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC--CeEEEee-cCCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457          102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST--DYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  178 (389)
                      .|.++++||..+.+....|+. ++.|.+-+++|-.  ..|++++ .+-.|++-|+.+|..-.++. +|...|.++.|+|.
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPS  199 (397)
T ss_pred             ccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccC
Confidence            999999999999999888887 4788888888743  3455544 48899999999999999999 99999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCC-----------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          179 NQNKVVSASVDGLICTFDTGGDI-----------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .+..|++|+.||.|++||++...           .....+..-..|.+.+..++|. .++.++++.+.|..+++|+..+|
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-ccchhhhhccCccceEEeecccC
Confidence            98889999999999999998431           0111222345678899999999 88999999999999999999887


Q ss_pred             cee-EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          248 QNV-ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       248 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      +.. ..+...-.....     | -.+. +. +.+... ++ ---.++.+.++.+-++..      +..+. +|-..|.+.
T Consensus       279 ~ntl~~~g~~~~n~~~-----~-~~~~-~~-~~~s~v-fv-~~p~~~~lall~~~sgs~------ir~l~-~h~k~i~c~  341 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTT-----S-FAVH-IQ-SMDSDV-FV-LFPNDGSLALLNLLEGSF------VRRLS-THLKRINCA  341 (397)
T ss_pred             cccccccccccccccc-----c-ceEE-Ee-ecccce-EE-EEecCCeEEEEEccCceE------EEeee-cccceeeEE
Confidence            543 222211100000     0 1111 22 222231 22 222447888888888776      55554 887788888


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                               +|.|+=+.+.+|..|+.|..|-..
T Consensus       342 ---------~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  342 ---------AYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             ---------eecCchhhhhccccCCcccccccc
Confidence                     788888888999999999999883

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.1e-28  Score=190.56  Aligned_cols=267  Identities=16%  Similarity=0.187  Sum_probs=214.9

Q ss_pred             CccccCCCCeEEEEecC--------------------ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce
Q 016457           13 KSQSCDNVNSIKRFGLK--------------------NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ   71 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~   71 (389)
                      ..|+++.|.+|++.|+.                    ..++++.. -+.|+++.|+|....|++|+.|++|++||+..-.
T Consensus       126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~s  205 (430)
T KOG0640|consen  126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTS  205 (430)
T ss_pred             EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHH
Confidence            46788899999999974                    14566666 8899999999999999999999999999987543


Q ss_pred             ee---eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE---EcCCCCeEEEEEeCCCCeEEEeecC
Q 016457           72 YS---GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV---TAGSQEIFCFSFGGSTDYLLAAGCG  145 (389)
Q Consensus        72 ~~---~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d  145 (389)
                      ..   +.++ ...+|.+|.|+|.|  ++|+.|....++++||+++.++...-   ..|.+.|+++.+++.++..++++.|
T Consensus       206 aKrA~K~~q-d~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD  282 (430)
T KOG0640|consen  206 AKRAFKVFQ-DTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD  282 (430)
T ss_pred             HHHHHHHhh-ccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence            22   2333 56789999999999  79999999999999999998876544   3468999999999999999999999


Q ss_pred             CeEEEEECcCCceeeeeeecccC-CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC-----Cceee
Q 016457          146 SQIQFWDWRNKKQVACLEESHVE-DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG-----TSVGK  219 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~i~~  219 (389)
                      |.|++||--+++++.++..+|.+ .|.+..|..+++ ++++.+.|..+++|.+.++    ..+..+.+.+     .--+.
T Consensus       283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~----R~l~~YtGAg~tgrq~~rtq  357 (430)
T KOG0640|consen  283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTG----RMLKEYTGAGTTGRQKHRTQ  357 (430)
T ss_pred             CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCC----ceEEEEecCCcccchhhhhh
Confidence            99999999999999999877765 689999999997 9999999999999999976    3444444331     11233


Q ss_pred             EEEecCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          220 VGFFGETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      ..|+ ...++++.-.. .+.+.-||.++...+..+.           .+|.+.+..+.-+|.+.  .+++++.|..+++|
T Consensus       358 AvFN-htEdyVl~pDEas~slcsWdaRtadr~~l~s-----------lgHn~a~R~i~HSP~~p--~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  358 AVFN-HTEDYVLFPDEASNSLCSWDARTADRVALLS-----------LGHNGAVRWIVHSPVEP--AFMTCSDDFRARFW  423 (430)
T ss_pred             hhhc-CccceEEccccccCceeeccccchhhhhhcc-----------cCCCCCceEEEeCCCCC--ceeeecccceeeee
Confidence            4455 45556555443 4689999999886665443           24889999999999998  67999999999999


Q ss_pred             Eec
Q 016457          299 PVN  301 (389)
Q Consensus       299 ~~~  301 (389)
                      --.
T Consensus       424 yrr  426 (430)
T KOG0640|consen  424 YRR  426 (430)
T ss_pred             eec
Confidence            543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=200.92  Aligned_cols=242  Identities=12%  Similarity=0.156  Sum_probs=206.8

Q ss_pred             CeEEEEecCceeeee-ec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457           21 NSIKRFGLKNSIQTN-FG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL   97 (389)
Q Consensus        21 ~~i~~w~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l   97 (389)
                      ..|.+|.+.++.+.. ..  ++.|.|++-+|+|.+|+.|+..|.|++|.+.+|+++..+.+|-..|+|+.|+.|+  .+|
T Consensus        61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg--s~i  138 (476)
T KOG0646|consen   61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG--SHI  138 (476)
T ss_pred             ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC--cEE
Confidence            367888886543333 22  8999999999999999999899999999999999999999999999999999999  799


Q ss_pred             EEEecCCeEEEEEcc---------CCeEEEEEEcCCCCeEEEEEeC--CCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           98 HSCSSDGTIRAWDTR---------SFHEVWSVTAGSQEIFCFSFGG--STDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +||+.||.|.+|.+.         +-++++.|..|.-+|+++...+  .+.++++++.|.++++||+..+..+.++.  .
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--f  216 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--F  216 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--c
Confidence            999999999999875         3467889999999999998764  35789999999999999999999999886  7


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC------------CCCccceeeeccCC--ceeeEEEecCCCcEEEE
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI------------NDDDLLESVINVGT--SVGKVGFFGETNKHLWC  232 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~  232 (389)
                      ...+.+++.+|.+. .+++|+.+|.|.+.++....            .....+..+.+|..  .|++++++ -++.+|++
T Consensus       217 p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlS  294 (476)
T KOG0646|consen  217 PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLS  294 (476)
T ss_pred             CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEe
Confidence            88999999999996 99999999999999886432            12234455667776  99999999 89999999


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE  280 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (389)
                      |+.||.++|||+.+.++++++...+            ++|+.+.+.|-
T Consensus       295 Gd~dg~VcvWdi~S~Q~iRtl~~~k------------gpVtnL~i~~~  330 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQCIRTLQTSK------------GPVTNLQINPL  330 (476)
T ss_pred             eCCCCCEEEEecchHHHHHHHhhhc------------cccceeEeecc
Confidence            9999999999999999998877533            67777777554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2e-27  Score=185.85  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=199.9

Q ss_pred             ccCCCCeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC
Q 016457           16 SCDNVNSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST   93 (389)
Q Consensus        16 s~~~~~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~   93 (389)
                      -.+.||++++|+...  ....+....++++++|.++. .+++|+.||.|+.+|+.+++.. .+..|..+|.||.+++.. 
T Consensus        30 vssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-  106 (323)
T KOG1036|consen   30 VSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-  106 (323)
T ss_pred             EEeccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-
Confidence            356899999999864  33334448999999999854 7889999999999999987654 445599999999999876 


Q ss_pred             CCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeE
Q 016457           94 PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQ  172 (389)
Q Consensus        94 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~  172 (389)
                       ..+++|++|++|++||.+.......+... ..|.++..  .++.|++++.+..+.+||+++.....+.. ...+-.++|
T Consensus       107 -~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~  182 (323)
T KOG1036|consen  107 -GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC  182 (323)
T ss_pred             -CeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence             69999999999999999987777676654 58999988  48899999999999999999876544332 134567999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---------CceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---------TSVGKVGFFGETNKHLWCLTHIETLSIWD  243 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~d~~i~i~d  243 (389)
                      +++.|++. =+++++-||.|.+=.+............+..|.         -+|++++|+ |-...|++|+.||.|.+||
T Consensus       183 v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh-p~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  183 VALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH-PIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             EEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec-cccceEEecCCCceEEEcc
Confidence            99999875 788999999998866663321222223333332         379999999 4567899999999999999


Q ss_pred             cCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      +.+.+.+..+..            .+..|.+++|+.+|.  .||.++.
T Consensus       261 ~~~rKrl~q~~~------------~~~SI~slsfs~dG~--~LAia~s  294 (323)
T KOG1036|consen  261 LFNRKRLKQLAK------------YETSISSLSFSMDGS--LLAIASS  294 (323)
T ss_pred             CcchhhhhhccC------------CCCceEEEEeccCCC--eEEEEec
Confidence            999998888875            347799999999999  6676643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=8.2e-28  Score=197.37  Aligned_cols=296  Identities=17%  Similarity=0.130  Sum_probs=222.4

Q ss_pred             CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      ...|++++|+|..  +++|+|...|+|-+||+.+.    .-+..+..|..+|.+|.|+|.+. ..+++.+.||+|+.-|+
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCceeeeeee
Confidence            7899999999965  58889999999999999532    23455678999999999999875 68999999999999999


Q ss_pred             cCCeE--EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          112 RSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       112 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      +....  +..+......+.++.|+..+..++.+..=|...+||++++.. ...+. .|...|++|+++|..+.+|++++.
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~  343 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASL  343 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeeccc
Confidence            86543  333333456677888987888888888878999999998765 44555 688899999999999989999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC----CCceeEEeecccccccCCc
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK----DGQNVASFENARSLASDSW  264 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~  264 (389)
                      |++.+|||+|.-.....++.....|...|.+..|+|.++. |++.+.|..|+|||..    ...+...+.....  ... 
T Consensus       344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~--t~R-  419 (498)
T KOG4328|consen  344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR--TGR-  419 (498)
T ss_pred             CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCc--ccc-
Confidence            9999999999543333346677789999999999966666 9999999999999984    2233333332110  000 


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee-
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-  343 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-  343 (389)
                         | -......|.|+..  +++.|..-..|-|||-..++.      +..+...-...|.++-        .|+|-+.. 
T Consensus       420 ---w-lT~fKA~W~P~~~--li~vg~~~r~IDv~~~~~~q~------v~el~~P~~~tI~~vn--------~~HP~~~~~  479 (498)
T KOG4328|consen  420 ---W-LTPFKAAWDPDYN--LIVVGRYPRPIDVFDGNGGQM------VCELHDPESSTIPSVN--------EFHPMRDTL  479 (498)
T ss_pred             ---c-ccchhheeCCCcc--EEEEeccCcceeEEcCCCCEE------eeeccCccccccccce--------eecccccce
Confidence               1 2345678999877  899999989999999988774      3443312223444442        67777774 


Q ss_pred             EEEecCCCeEEEEecc
Q 016457          344 GWTGGEDGRLCCWLSD  359 (389)
Q Consensus       344 l~s~~~dg~v~iW~~~  359 (389)
                      ++.++.-|.|.||--+
T Consensus       480 ~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  480 AAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eccCCccceEEEEecC
Confidence            4445577888888644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=195.89  Aligned_cols=283  Identities=9%  Similarity=0.117  Sum_probs=224.9

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .++|+++.|+|...+|++|+.|++++||.++.  ...++.+.-...+|.+.+|.|+|. ..+++++....+..||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccccc
Confidence            78899999999999999999999999998863  345566655678999999999994 489999999999999998876


Q ss_pred             EEE--EEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          116 EVW--SVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       116 ~~~--~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      ...  ...++ ...+.....+|+++.++..|..|.|.+....+++.+.+++  -.+.|..++|+.+++ .|++++.+|.|
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk-~l~~~~~~GeV  368 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSK-ELLASGGTGEV  368 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCc-EEEEEcCCceE
Confidence            543  23333 3467788899999999999999999999999999999997  678899999999996 88888889999


Q ss_pred             EEEecCCCCCCCccceeeeccCCce--eeEEEecCCCcEEEEEecCCcEEEEEcCC------CceeEEeecccccccCCc
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSV--GKVGFFGETNKHLWCLTHIETLSIWDWKD------GQNVASFENARSLASDSW  264 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~  264 (389)
                      .+||++..    .++..+.. ++.|  ++++.+ .++.+|++|+..|.|.|||..+      .+++..+..         
T Consensus       369 ~v~nl~~~----~~~~rf~D-~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---------  433 (514)
T KOG2055|consen  369 YVWNLRQN----SCLHRFVD-DGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---------  433 (514)
T ss_pred             EEEecCCc----ceEEEEee-cCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---------
Confidence            99999943    44444433 3333  456666 7788999999999999999653      345555554         


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEe--cCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCC
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGG--TGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                         -...|.++.|+++.+  +|+.+  .....+++-.+.+...      ...++  ...-+.|+|+         +|||.
T Consensus       434 ---Ltt~Itsl~Fn~d~q--iLAiaS~~~knalrLVHvPS~TV------FsNfP~~n~~vg~vtc~---------aFSP~  493 (514)
T KOG2055|consen  434 ---LTTAITSLQFNHDAQ--ILAIASRVKKNALRLVHVPSCTV------FSNFPTSNTKVGHVTCM---------AFSPN  493 (514)
T ss_pred             ---hheeeeeeeeCcchh--hhhhhhhccccceEEEeccceee------eccCCCCCCcccceEEE---------EecCC
Confidence               337899999999999  55544  4567899888877543      11111  1222567888         99999


Q ss_pred             ceeEEEecCCCeEEEEecc
Q 016457          341 GIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~~~  359 (389)
                      +.|||.|-++|.|.+|++.
T Consensus       494 sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CceEEeecCCCceeeEeec
Confidence            9999999999999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.1e-28  Score=183.60  Aligned_cols=230  Identities=17%  Similarity=0.261  Sum_probs=190.0

Q ss_pred             CccccCCCCeEEEEecC-----ceeeeeec-CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCc
Q 016457           13 KSQSCDNVNSIKRFGLK-----NSIQTNFG-DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSST   82 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~-----~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~   82 (389)
                      +.|||++|++|+++...     +++.++.| .++|..++|..  .|.+||+++.||.|.||.-++|+  ....+..|...
T Consensus        25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S  104 (299)
T KOG1332|consen   25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS  104 (299)
T ss_pred             eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc
Confidence            68999999999999985     35677888 99999999986  88999999999999999988774  34456789999


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCC---C-----------CeEEEeecC
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGS---T-----------DYLLAAGCG  145 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d  145 (389)
                      |++++|.|.+.+-.|++++.||.|.|.+.+..   ........|.-.|++++|.|.   +           .+|+++|.|
T Consensus       105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD  184 (299)
T KOG1332|consen  105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD  184 (299)
T ss_pred             ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence            99999999987789999999999999998754   223445678899999999986   3           459999999


Q ss_pred             CeEEEEECcCCc--eeeeeeecccCCeeEEEEecCC---CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          146 SQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNN---QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       146 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                      ..|+||+..+++  .-.++. +|.+.|+.++|.|.-   ...|++++.||+|.||..+... .......+......+..+
T Consensus       185 n~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll~~f~~~~w~v  262 (299)
T KOG1332|consen  185 NLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRV  262 (299)
T ss_pred             cceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-CcccccccccCCcceEEE
Confidence            999999988764  234466 899999999999974   3489999999999999988322 222222333456789999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcC
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      .|+ ..+++|++++.|+.+.+|.-.
T Consensus       263 SWS-~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  263 SWS-LSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEe-ccccEEEEecCCcEEEEEEeC
Confidence            999 789999999999999999754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=4.3e-26  Score=189.58  Aligned_cols=299  Identities=13%  Similarity=0.162  Sum_probs=230.7

Q ss_pred             CCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee---ecC-CCCcEEEEEEeC
Q 016457           18 DNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE---CKG-HSSTVNQISFSG   90 (389)
Q Consensus        18 ~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~-~~~~v~~i~~~~   90 (389)
                      +.+..+.+||..+  ....... ++.|....|+|.+.-|++....+-+..|+.+.+.+.+.   +.. ...-|.|++|.+
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e  256 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE  256 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence            3455677777653  2333333 78899999999775554444478999999988755443   333 236799999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-----------ee
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-----------QV  159 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~  159 (389)
                      ++   -+++|..+|.|.||+..+.+..+....|.+.|.+++.. .++.|++++.|..|..||-.-.+           .+
T Consensus       257 ng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  257 NG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI  332 (626)
T ss_pred             CC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccEeecCccceEEeccccccccccccCchhcCCe
Confidence            98   69999999999999999888888888999999999998 66778888889999999832100           00


Q ss_pred             ee----------------------------eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee
Q 016457          160 AC----------------------------LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       160 ~~----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      ++                            ...+|......++.+|... ++++++.|+.+++|+ .      ..+.-..
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~------~k~~wt~  404 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-D------HKLEWTK  404 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-C------CceeEEE
Confidence            11                            0125777888899999985 999999999999999 3      2244444


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      ....+..++.|+ |.+ .+++|+..|...+.|.++...+..-..             ..++..++|+|+|.  +||.|+.
T Consensus       405 ~~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-------------~~~ls~v~ysp~G~--~lAvgs~  467 (626)
T KOG2106|consen  405 IIEDPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-------------NEQLSVVRYSPDGA--FLAVGSH  467 (626)
T ss_pred             EecCceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEec-------------CCceEEEEEcCCCC--EEEEecC
Confidence            567789999999 566 999999999999999998655544332             37899999999999  9999999


Q ss_pred             CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      |+.|+||.+.....     ........|..+|+.+         .||+|++||.+-+-|-.|..|...
T Consensus       468 d~~iyiy~Vs~~g~-----~y~r~~k~~gs~ithL---------DwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  468 DNHIYIYRVSANGR-----KYSRVGKCSGSPITHL---------DWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCeEEEEEECCCCc-----EEEEeeeecCceeEEe---------eecCCCceEEeccCceEEEEEccc
Confidence            99999999986643     1222222344888888         999999999999999999999443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1.3e-26  Score=192.67  Aligned_cols=315  Identities=14%  Similarity=0.198  Sum_probs=240.4

Q ss_pred             CCccccCCCCeEEEEecCce--eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee---------------
Q 016457           12 PKSQSCDNVNSIKRFGLKNS--IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS---------------   73 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~---------------   73 (389)
                      .+.-++.++|.|.+|+.+..  .++... ++.|.+++.-.+|.+|- |+.|..|..||-. -+.+               
T Consensus       258 gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  258 GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEE
Confidence            35668889999999998642  222223 89999999999996555 9999999999831 1100               


Q ss_pred             --------------------------eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457           74 --------------------------GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI  127 (389)
Q Consensus        74 --------------------------~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  127 (389)
                                                ....+|.+....++.+|+.  +++++++.|+.+++|+  ..+++.+... ..++
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~  410 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTKII-EDPA  410 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEEEe-cCce
Confidence                                      0124688889999999998  7999999999999999  5666666655 5889


Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (389)
                      .|+.|+|.+ .++++...|...+.|.++...+..-. . ..++++++|+|+|. +||.|+.|+.|++|-+..........
T Consensus       411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             eEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEe
Confidence            999999988 88888889999999999866655554 3 88999999999995 99999999999999998543222222


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC---------ccCCCCCceeeeccc
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS---------WTLDDVDYFVDCHYP  278 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~  278 (389)
                      ..  .+..+|+.+.|+ .+++++.+-+.|-.|-.|....-+.+......   ...+         ..-.+...+..++-+
T Consensus       487 ~k--~~gs~ithLDwS-~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDv---kW~t~~c~lGF~v~g~s~~t~i~a~~rs  560 (626)
T KOG2106|consen  487 GK--CSGSPITHLDWS-SDSQFLVSNSGDYEILYWKPSECKQITSVKDV---KWATYTCTLGFEVFGGSDGTDINAVARS  560 (626)
T ss_pred             ee--ecCceeEEeeec-CCCceEEeccCceEEEEEccccCcccceecce---eeeeeEEEEEEEEecccCCchHHHhhhh
Confidence            22  244899999999 88999999999999999954433322221110   0000         001155677778888


Q ss_pred             CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          279 GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      .+.+  ++++|...|.|++|...-.+.   ..+-.++ .+|+..|.++         +|.-+...|++.+.|..|..|++
T Consensus       561 ~~~~--~lA~gdd~g~v~lf~yPc~s~---rA~~he~-~ghs~~vt~V---------~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  561 HCEK--LLASGDDFGKVHLFSYPCSSP---RAPSHEY-GGHSSHVTNV---------AFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhh--hhhccccCceEEEEccccCCC---cccceee-ccccceeEEE---------EEeeCCceEEecCCCceEEEEEe
Confidence            8888  899999999999998876554   2333455 4999999999         89888888888889999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=195.06  Aligned_cols=251  Identities=13%  Similarity=0.153  Sum_probs=198.0

Q ss_pred             CcceEEEeecCC-------CCeEEEEecCCeEEEEeCCCce---ee------------------eeecCCCCcEEEEEEe
Q 016457           38 DDYVFEIVPKND-------WSLMAVSLSTNVVKLYSPVTGQ---YS------------------GECKGHSSTVNQISFS   89 (389)
Q Consensus        38 ~~~v~~~~~~~~-------~~~l~~~~~d~~i~iw~~~~~~---~~------------------~~~~~~~~~v~~i~~~   89 (389)
                      .....|++|...       |+++|+|+.+..|.|||+.-..   +.                  ....+|+..|.++.|+
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            455577777533       5799999999999999974211   10                  1123699999999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCcee-eeeeeccc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQV-ACLEESHV  167 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~  167 (389)
                      ..-+ +.|+||+.|.+|++||+.++++..++..|...|.++.|+|.... |++|+.|++|.+.|.|..... ..+  ...
T Consensus       253 ~~~~-nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~  329 (463)
T KOG0270|consen  253 RNFR-NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFD  329 (463)
T ss_pred             cccc-eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--Eec
Confidence            8775 79999999999999999999999999999999999999987665 555666999999999953322 222  255


Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      +.|..++|+|..++.+++++.||+|+-+|+|..   .+++..+..|..+|.+++++.....++++++.|+.+++|++...
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            789999999999889999999999999999943   47889999999999999999777779999999999999998755


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .........-          .-+...+.++.|+-.. +++.|+..+.++|||+.+...
T Consensus       407 ~~~~v~~~~~----------~~~rl~c~~~~~~~a~-~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  407 SPKSVKEHSF----------KLGRLHCFALDPDVAF-TLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CCcccccccc----------cccceeecccCCCcce-EEEecCccceEEEeecccChh
Confidence            4322221110          1134566777777553 578888889999999987653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=208.72  Aligned_cols=274  Identities=16%  Similarity=0.176  Sum_probs=221.2

Q ss_pred             CCccccCCCCeEEEEecCc----ee-----------e-------------------------eeecCcceEEEeecCCCC
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SI-----------Q-------------------------TNFGDDYVFEIVPKNDWS   51 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~-----------~-------------------------~~~~~~~v~~~~~~~~~~   51 (389)
                      ....||+.|++|++|++..    .+           +                         +..+.-.+.+++.+|+|+
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq  472 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ  472 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence            3466899999999999742    11           0                         000145799999999999


Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC-CCCEEEEEecCCeEEEEEccC-CeEEEEEEcCCCCeEE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS-TPHVLHSCSSDGTIRAWDTRS-FHEVWSVTAGSQEIFC  129 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~  129 (389)
                      .||+|..-|.++||++...+....+.+|...|.|+.|+... ..++|++++.|..|.++|+.. ..++.++.+|...|++
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs  552 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS  552 (1080)
T ss_pred             eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence            99999999999999999988889999999999999998532 125899999999999999964 4577899999999999


Q ss_pred             EEEeCCC--CeEEEeecCCeEEEEECcCCceeeeee----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457          130 FSFGGST--DYLLAAGCGSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND  203 (389)
Q Consensus       130 ~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (389)
                      +.|.-.+  ..++++|.|..|.+--.+.......+.    ......++.|+..|.-+ ++++++.|+.|+|||+.+++ .
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgK-q  630 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGK-Q  630 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccc-e
Confidence            9998666  679999998887653322111111111    01235689999999996 99999999999999999764 2


Q ss_pred             CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          204 DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                      .+..+....|++....+... |.+.++++.+.|+++.++|..+++++.+..+            |...|+.+.|.+|-+ 
T Consensus       631 ~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~G------------HsE~VTG~kF~nDCk-  696 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMTG------------HSEAVTGVKFLNDCK-  696 (1080)
T ss_pred             eeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhcC------------cchheeeeeecccch-
Confidence            23333344566778888888 7899999999999999999999999999887            779999999999999 


Q ss_pred             EEEEEecCCceEEEEEecc
Q 016457          284 LWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~  302 (389)
                       .|++.+.||.|.||.+..
T Consensus       697 -HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  697 -HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -hheeecCCceEEEEECch
Confidence             889999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=214.26  Aligned_cols=244  Identities=19%  Similarity=0.267  Sum_probs=197.6

Q ss_pred             ceEEEeecC-CCCeEEEEecCCeEEEEeCCC---ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           40 YVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT---GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        40 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .+..+.|.. +.++||+++..|.|.+||+..   .+.+..|..|+..++++.|++... .+|++|+.||+|++||++..+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeeccc
Confidence            345566764 457999999999999999987   567778899999999999998764 899999999999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          116 EVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      ...++.+....|..+.|+|..+..+++. ..|.+.+||+|.. ++...+. +|.++|.|+.|+|++. +||+|+.|+.|+
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~-~lATGGRDK~vk  245 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNRE-WLATGGRDKMVK  245 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCc-eeeecCCCccEE
Confidence            9999998889999999999766655554 5799999999975 4566776 9999999999999884 999999999999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCCCc-eeEEeecccccccCCccCCCCC
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      |||+.+..   ...........++.++.|-|.....|++++.  |-.|+|||++-.- +..+|..            |..
T Consensus       246 iWd~t~~~---~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e------------H~~  310 (839)
T KOG0269|consen  246 IWDMTDSR---AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE------------HTD  310 (839)
T ss_pred             EEeccCCC---ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec------------cCc
Confidence            99999543   2233334456789999999777767777765  6699999997653 4556665            668


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .++.++|.. +....+.+++.||.|..-.++.
T Consensus       311 ~vt~i~W~~-~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  311 SVTGIAWDS-GDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             cccceeccC-CCceeeEeecCccHHHHhhhhc
Confidence            889999977 3333788999999887655543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=8e-27  Score=197.72  Aligned_cols=291  Identities=14%  Similarity=0.144  Sum_probs=222.9

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ...+.| .+.|.+++..|.|..||+|+.||+|+||.+.+|.++..+. ..+.|.||+|+|.+...+||++-.+. +.|-+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn  470 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN  470 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence            344566 8999999999999999999999999999999999999887 56789999999988633455444333 44444


Q ss_pred             ccCC-------------------------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEE
Q 016457          111 TRSF-------------------------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQF  150 (389)
Q Consensus       111 ~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i  150 (389)
                      ..-|                                     .-++..-.|...|..+.|+..|.+|++...   ...|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            3211                                     012223345788999999999999988765   467999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      +++.......-|. ...+.|.++.|+|..+ +|++++ ...|+|||+..    ...+..+......|..++.+ ++|..|
T Consensus       551 HQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~k----qelvKkL~tg~kwiS~msih-p~GDnl  622 (733)
T KOG0650|consen  551 HQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSK----QELVKKLLTGSKWISSMSIH-PNGDNL  622 (733)
T ss_pred             EecccccccCchh-hcCCceeEEEecCCCc-eEEEEe-ccceEEEehhH----HHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence            9998766655555 4567899999999997 777766 56799999983    34555666666789999999 788899


Q ss_pred             EEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC---cc
Q 016457          231 WCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG---AA  306 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~---~~  306 (389)
                      ++++.|+.+..||+.-. ++.+++..            |...+.+++|++.-.  ++++|+.||++.||.-.-..   ..
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~------------H~~avr~Va~H~ryP--Lfas~sdDgtv~Vfhg~VY~Dl~qn  688 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRL------------HEKAVRSVAFHKRYP--LFASGSDDGTVIVFHGMVYNDLLQN  688 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhh------------hhhhhhhhhhccccc--eeeeecCCCcEEEEeeeeehhhhcC
Confidence            99999999999998754 45555555            779999999999777  88999999999998432110   01


Q ss_pred             ccCCCeEEEeccccee----eeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          307 TIGPPEAVLVGGHTAV----VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      .+--|+..+. +|...    |.++         .|+|...+|+|+|.||+|++|
T Consensus       689 pliVPlK~L~-gH~~~~~~gVLd~---------~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  689 PLIVPLKRLR-GHEKTNDLGVLDT---------IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceEeeeecc-CceeecccceEee---------cccCCCceEEecCCCceEEee
Confidence            1123456665 88755    6666         899999999999999999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1.5e-25  Score=192.01  Aligned_cols=264  Identities=11%  Similarity=0.097  Sum_probs=196.7

Q ss_pred             cccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeE-EEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457           15 QSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLM-AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      .+.+.|+.|++|++.  +.+..+.+...+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus         5 ~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~   83 (300)
T TIGR03866         5 VSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN   83 (300)
T ss_pred             EEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence            467789999999975  455666655557889999999876 5667789999999999888777765443 567899999


Q ss_pred             CCCCEEE-EEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC-eEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLH-SCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-QIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +  +.++ +++.++.|++||+.+.+.+..+..+ ..+.+++|+|++..++++..++ .+.+||.++++....+.  ....
T Consensus        84 g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  158 (300)
T TIGR03866        84 G--KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQR  158 (300)
T ss_pred             C--CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCC
Confidence            8  5554 4556899999999998888777643 4578899999999988887754 57788998887766554  3345


Q ss_pred             eeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeeecc-------CCceeeEEEecCCCcEEEE-EecCCcEE
Q 016457          170 VTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVINV-------GTSVGKVGFFGETNKHLWC-LTHIETLS  240 (389)
Q Consensus       170 v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~-~~~d~~i~  240 (389)
                      ..+++|+|++. .++ ++..++.|++||+.++.    .+..+..+       ......++|+ ++++++++ .+.++.+.
T Consensus       159 ~~~~~~s~dg~-~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       159 PRFAEFTADGK-ELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVA  232 (300)
T ss_pred             ccEEEECCCCC-EEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEEC-CCCCEEEEEcCCCCeEE
Confidence            67899999996 664 55569999999999653    12221111       1123467888 66666444 45677899


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cCCceEEEEEeccCCc
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TGAGTVGYFPVNYGGA  305 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~~~~~  305 (389)
                      +||+.+++.+..+.             +...+.+++|+|+|+  +|+++ ..+|.|.+||+.+++.
T Consensus       233 v~d~~~~~~~~~~~-------------~~~~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       233 VVDAKTYEVLDYLL-------------VGQRVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EEECCCCcEEEEEE-------------eCCCcceEEECCCCC--EEEEEcCCCCeEEEEECCCCcE
Confidence            99999887776553             225688999999999  66654 5689999999999775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.3e-26  Score=199.63  Aligned_cols=319  Identities=14%  Similarity=0.191  Sum_probs=249.8

Q ss_pred             CCccccCCCCeEEEEecC--c---------------------eeee----------eec-CcceEEEeecCCCCeEEEEe
Q 016457           12 PKSQSCDNVNSIKRFGLK--N---------------------SIQT----------NFG-DDYVFEIVPKNDWSLMAVSL   57 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~---------------------~~~~----------~~~-~~~v~~~~~~~~~~~l~~~~   57 (389)
                      -..||++.|..||+|++.  .                     ....          +.| .+.|+++.|+|.+..|++++
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS  286 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS  286 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence            357899999999999862  1                     0101          125 89999999999999999999


Q ss_pred             cCCeEEEEeCCCce-------eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCe
Q 016457           58 STNVVKLYSPVTGQ-------YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEI  127 (389)
Q Consensus        58 ~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v  127 (389)
                      .|.++.+|...+..       .+....+.........|+|++  +.+++-+.-|..++|.....   .....+.+|...|
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V  364 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV  364 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC--CEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence            99999999876431       122233455678999999999  79999999999999983321   3445677899999


Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCC----ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC---
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK----KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD---  200 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---  200 (389)
                      ..++|+|.|.++++++.|.+-++|-.-..    ..+.+-+ -|...++|++|-+.. ..|++|..+..+++|+....   
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccc-cccccceeeehccCC-ceeeecccceeeeeecCcHHHHH
Confidence            99999999999999999999999864411    1233333 688899999999864 58999999999999986410   


Q ss_pred             ----------------------------------------CC-----------------------------CCccceeee
Q 016457          201 ----------------------------------------IN-----------------------------DDDLLESVI  211 (389)
Q Consensus       201 ----------------------------------------~~-----------------------------~~~~~~~~~  211 (389)
                                                              ..                             ....+.++.
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence                                                    00                             001123456


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      +|...|.+++.+ ++++++++++...     .|++|+..+....+.+..            |.-.|+.++|+|||+  ||
T Consensus       523 GHGyEv~~l~~s-~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~------------HsLTVT~l~FSpdg~--~L  587 (764)
T KOG1063|consen  523 GHGYEVYALAIS-PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG------------HSLTVTRLAFSPDGR--YL  587 (764)
T ss_pred             cCceeEEEEEec-CCCCEEeehhhhCCccceEEEEEeccchhhhheecc------------cceEEEEEEECCCCc--EE
Confidence            778889999999 7889999988754     689999998888888877            779999999999999  99


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ++.+.|.++.+|...........  .... ..|+..|.+.         .|+|++.+++|+|.|.+|++|...+.
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~--fa~~-k~HtRIIWdc---------sW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFR--FACL-KAHTRIIWDC---------SWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEeecCceEEeeeeecccchhhh--hccc-cccceEEEEc---------ccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999998654431111  1223 4899999999         99999999999999999999999876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.6e-26  Score=202.81  Aligned_cols=246  Identities=14%  Similarity=0.147  Sum_probs=202.3

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ..+-+.++|.|+|.+|++++.||.|++|+.... +.-..+.-+...|.+++-.  +  .+|++|+.+++|.+|.+.+++.
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s--~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--S--NHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--c--cceEEeeccceEEEeeCCCCCc
Confidence            566889999999999999999999999987655 3344444477888888764  3  4899999999999999998876


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      -..+....-++.+++|+.+|..+++|+.|-.|++.++........+. +|..+|.++.|+|++. +||+.+-||.|++||
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~-fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWD  166 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCC-EEEEEecCceEEEEE
Confidence            65555556789999999888899999999999999999998999998 9999999999999995 999999999999999


Q ss_pred             cCCCCCCCcc--c-eeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          197 TGGDINDDDL--L-ESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       197 ~~~~~~~~~~--~-~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      +..+......  + .... .....+..++|+ |++..+++.+.|+.|++|+..+......+....          +...+
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~----------~ss~~  235 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL----------SSSKF  235 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCCceeheeecccc----------cccce
Confidence            9965311110  0 0011 114567889999 454567777889999999999998888887643          44559


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ..+.|+|+|+  |||+++.||.|.|||+++
T Consensus       236 ~~~~wsPnG~--YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  236 SDLQWSPNGK--YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence            9999999999  999999999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-25  Score=168.07  Aligned_cols=247  Identities=15%  Similarity=0.183  Sum_probs=198.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-----eeeeecCCCCcEEEEEEeCCCC--CCEEEEEe-cCCeEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSGPST--PHVLHSCS-SDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~--~~~l~s~~-~dg~i~iw  109 (389)
                      .+.|+|.+|+|+|.+||+|+.|.+|++.-++...     .-..+.-|.+.|..++|..+.+  +.+|++++ .|..|.+-
T Consensus        89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t  168 (350)
T KOG0641|consen   89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT  168 (350)
T ss_pred             CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence            8899999999999999999999999998665322     1235677999999999975431  25777765 56788888


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-c-----ccCCeeEEEEecCCCCeE
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-S-----HVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l  183 (389)
                      |-..++..+.+.+|.+.|.++--- ++-.+++++.|.+|++||++-..++.++.. .     ..+.|.+++..|.|+ +|
T Consensus       169 dc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll  246 (350)
T KOG0641|consen  169 DCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LL  246 (350)
T ss_pred             ecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-ee
Confidence            999999999999999999887533 466666777799999999998888877652 1     235799999999997 99


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++|..|....+||++.+    ..+..+..|...|.++.|+ |...++++++.|..|++-|+. +...+.+...-.     
T Consensus       247 ~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlq-gdla~el~~~vv-----  315 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVV-----  315 (350)
T ss_pred             eeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecc-cchhhcCceEEE-----
Confidence            99999999999999965    5688888999999999999 777899999999999999986 322222211000     


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                        .+|.+.+..+.|+|+.-  -+++.+.|.++.+|-+.
T Consensus       316 --~ehkdk~i~~rwh~~d~--sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 --AEHKDKAIQCRWHPQDF--SFISSSADKTATLWALN  349 (350)
T ss_pred             --EeccCceEEEEecCccc--eeeeccCcceEEEeccC
Confidence              01778999999999765  56899999999999764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-25  Score=175.84  Aligned_cols=251  Identities=13%  Similarity=0.207  Sum_probs=194.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      .+-|+++.|.+.|+.+|+|+.|++|+|||.+..    .+....+.|.+.|..|.|.+..-++.+|+++.|+++.||.-..
T Consensus        13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~   92 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE   92 (361)
T ss_pred             cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence            677999999999999999999999999996543    4566788999999999998876668999999999999997521


Q ss_pred             ---------CeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCcee------eeee------ecccCCe
Q 016457          114 ---------FHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQV------ACLE------ESHVEDV  170 (389)
Q Consensus       114 ---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~------~~~~------~~~~~~v  170 (389)
                               -....++......|+.+.|.|.  |-.|++++.||.++||+.-..-.+      ..+.      ..+..+.
T Consensus        93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~  172 (361)
T KOG2445|consen   93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC  172 (361)
T ss_pred             cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence                     1234566667899999999985  455777777999999987543221      1111      1356678


Q ss_pred             eEEEEecCC--CCeEEEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC---cEEEEEecCCcEE
Q 016457          171 TQVHFVPNN--QNKVVSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN---KHLWCLTHIETLS  240 (389)
Q Consensus       171 ~~~~~~~~~--~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~  240 (389)
                      .|+.|+|..  +.+|+.|+.+     +.++||...........+..+.+|..+|+.++|.|.-|   .+|++++.|| |+
T Consensus       173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~  251 (361)
T KOG2445|consen  173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR  251 (361)
T ss_pred             eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence            899999753  2277777765     47899988755434455667778999999999996544   5799999999 99


Q ss_pred             EEEcCCCc--------------------eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          241 IWDWKDGQ--------------------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       241 i~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      ||.+....                    .+..+.            +|...|+.+.|+-.|.  .|++.+.||.|++|..
T Consensus       252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~------------~H~~~VWrv~wNmtGt--iLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD------------DHNGEVWRVRWNMTGT--ILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEEeeccchhhhhcccCCCCccccceEEeeecc------------CCCCceEEEEEeeeee--EEeecCCCceeeehhh
Confidence            99987321                    111222            2889999999999998  8899999999999976


Q ss_pred             ccC
Q 016457          301 NYG  303 (389)
Q Consensus       301 ~~~  303 (389)
                      .-.
T Consensus       318 ny~  320 (361)
T KOG2445|consen  318 NYN  320 (361)
T ss_pred             hhh
Confidence            543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-26  Score=192.21  Aligned_cols=280  Identities=14%  Similarity=0.193  Sum_probs=219.1

Q ss_pred             cCCCCeEEEEecCc--eeeeee---cCcceEEEeecCCCCeEEEE--ecCCeEEEEeCCCce---e--eeeecCCCCcEE
Q 016457           17 CDNVNSIKRFGLKN--SIQTNF---GDDYVFEIVPKNDWSLMAVS--LSTNVVKLYSPVTGQ---Y--SGECKGHSSTVN   84 (389)
Q Consensus        17 ~~~~~~i~~w~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~---~--~~~~~~~~~~v~   84 (389)
                      ++....+++||...  ....+.   ....++++.|+.... |+++  +.|..+++|.-. |+   .  +....+.  .-.
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd--~~~   83 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGD--NAF   83 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccc--hHH
Confidence            44556899999742  122222   255699999998764 4444  447789999743 33   1  1122222  223


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      |++.....  .++++|+..+.|+|||++...+.+.++.|.+.|+++.++-.+.+|++++..|.|.|..+.++.....+..
T Consensus        84 Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   84 CVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             HHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            33333233  5999999999999999998778888999999999999998888888888899999999999988888874


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      +....|.-+.|+|..+.+|.+++.+|.|.+||....   .........|..+...++|+|.+..+|++.+.|..|.+||.
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC---CcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            445667799999998888999999999999999853   23344456788999999999888899999999999999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR  324 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~  324 (389)
                      ...+....+.             ...+...++|+++|.  +|++|+..|.|..||++..+.     |+..+. .|...|+
T Consensus       239 ~s~~s~~~l~-------------y~~Plstvaf~~~G~--~L~aG~s~G~~i~YD~R~~k~-----Pv~v~s-ah~~sVt  297 (673)
T KOG4378|consen  239 RSQASTDRLT-------------YSHPLSTVAFSECGT--YLCAGNSKGELIAYDMRSTKA-----PVAVRS-AHDASVT  297 (673)
T ss_pred             ccccccceee-------------ecCCcceeeecCCce--EEEeecCCceEEEEecccCCC-----CceEee-eccccee
Confidence            9776666655             336789999999999  999999999999999998664     566665 8999999


Q ss_pred             ec
Q 016457          325 SV  326 (389)
Q Consensus       325 ~~  326 (389)
                      ++
T Consensus       298 ~v  299 (673)
T KOG4378|consen  298 RV  299 (673)
T ss_pred             EE
Confidence            99

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.3e-28  Score=211.27  Aligned_cols=256  Identities=18%  Similarity=0.233  Sum_probs=217.1

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCF  130 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  130 (389)
                      .+++..-..-.+++|+.+      .+..|...|.++..-..+  ..+++|+.|-.+-+|.+.....+..+.+|..+|.++
T Consensus         5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~--r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSS--RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL   76 (825)
T ss_pred             cccceeeeeeccccccch------hhhhhhhhhceeeeeccc--eeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence            344444445567788754      344688888888885555  799999999999999998888888899999999999


Q ss_pred             EEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee
Q 016457          131 SFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       131 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  210 (389)
                      .|++....+.+++.+|+|++||++..+.++++. +|...+.++.|+|-+. +++.|+.|+.+++||.+.    ..+...+
T Consensus        77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk----~Gc~~~~  150 (825)
T KOG0267|consen   77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK----KGCSHTY  150 (825)
T ss_pred             ecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc----cCceeee
Confidence            999887778888889999999999999999998 9999999999999996 889999999999999993    3566777


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                      .+|...+..+.|+ |+|.+++.++.|..++|||+..|+....|..            |+..+..+.|+|..-  ++++|+
T Consensus       151 ~s~~~vv~~l~ls-P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~------------~e~~v~sle~hp~e~--Lla~Gs  215 (825)
T KOG0267|consen  151 KSHTRVVDVLRLS-PDGRWVASGGEDNTVKIWDLTAGKLSKEFKS------------HEGKVQSLEFHPLEV--LLAPGS  215 (825)
T ss_pred             cCCcceeEEEeec-CCCceeeccCCcceeeeeccccccccccccc------------ccccccccccCchhh--hhccCC
Confidence            7788889999999 8899999999999999999999999999997            779999999999765  789999


Q ss_pred             CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          291 GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       291 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      .|+++++||+++.+.      +.... .....|.+.         +|+++++.+++|..+.
T Consensus       216 ~d~tv~f~dletfe~------I~s~~-~~~~~v~~~---------~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  216 SDRTVRFWDLETFEV------ISSGK-PETDGVRSL---------AFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeeccceeEE------eeccC-CccCCceee---------eecCCceeeecCchhh
Confidence            999999999997655      33332 335677888         9999999988886543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=3.7e-26  Score=183.35  Aligned_cols=227  Identities=19%  Similarity=0.286  Sum_probs=180.4

Q ss_pred             CCCCccccCCCCeEEEEecCc------------------eeeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCC
Q 016457           10 SQPKSQSCDNVNSIKRFGLKN------------------SIQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVT   69 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~~------------------~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~   69 (389)
                      ..+..|+.+..|.|++|++..                  ++.++.+ ...=++++|||-. ..|++|.--+.|++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            445678889999999999742                  4555556 6666789999933 3588887788999999888


Q ss_pred             cee---eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEee
Q 016457           70 GQY---SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAG  143 (389)
Q Consensus        70 ~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  143 (389)
                      |.-   ...+.+|+..|-.++|+|... ..|+||+.||+|+|||++.+   .++. .+.|.+.|+-+.|+..-..|++|+
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~  321 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGG  321 (440)
T ss_pred             CceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecC
Confidence            743   234677999999999999876 79999999999999999987   3333 488999999999997777677778


Q ss_pred             cCCeEEEEECcC---CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC------------Cccce
Q 016457          144 CGSQIQFWDWRN---KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND------------DDLLE  208 (389)
Q Consensus       144 ~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------------~~~~~  208 (389)
                      .||+++|||+|+   ++++.+++ .|..+|++|.|+|.....|++++.|..|.+||+......            .-+..
T Consensus       322 DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ  400 (440)
T KOG0302|consen  322 DDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ  400 (440)
T ss_pred             CCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence            899999999995   56788998 899999999999998889999999999999999854320            01112


Q ss_pred             eeecc--CCceeeEEEecCCCcEEEEEecCCcE
Q 016457          209 SVINV--GTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       209 ~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      -++.|  +..+..+.|++....++++.+.||.-
T Consensus       401 LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  401 LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             eEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence            23334  45688899997777789988888843

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-25  Score=182.71  Aligned_cols=281  Identities=15%  Similarity=0.178  Sum_probs=205.6

Q ss_pred             EEeecCCCCeEEEEecCC-----eEEEEeCCCceeeeeecCC----CCcEEEEEEeCC-----CCCCEEEEEecCCeEEE
Q 016457           43 EIVPKNDWSLMAVSLSTN-----VVKLYSPVTGQYSGECKGH----SSTVNQISFSGP-----STPHVLHSCSSDGTIRA  108 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~-----~~~~~l~s~~~dg~i~i  108 (389)
                      .+..-|+.++|+++-.+.     .|++|+-.....   +-.|    ...-.|++|...     +.++++|.|+.|..|.|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            455667666666664432     456666432111   1112    123356777543     23479999999999999


Q ss_pred             EEccCCe---EEEE------------------EEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecc
Q 016457          109 WDTRSFH---EVWS------------------VTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus       109 wd~~~~~---~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      ||+.-..   +..+                  -.+|+..|.+++|+..-..++++| .|.+|++||+.++++..++. .|
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~  285 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HH  285 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hc
Confidence            9986321   1111                  225777888999987666655555 49999999999999999998 89


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .+.|.++.|+|..+..|++|+.|++|.++|.|.    ...........+.|-.++|.+.....+++++.||+++-+|+++
T Consensus       286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~----~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~  361 (463)
T KOG0270|consen  286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD----PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN  361 (463)
T ss_pred             CCceeEEEecCCCceEEEeccccceEEeeeccC----ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence            999999999999988999999999999999993    2223333445678999999987888899999999999999997


Q ss_pred             C-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce---e
Q 016457          247 G-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA---V  322 (389)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~---~  322 (389)
                      . +++.++..            |.+.|.++++++.-.. ++++++.|+.|++|++.....       ... ..|..   .
T Consensus       362 ~~~~vwt~~A------------Hd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~-------~~v-~~~~~~~~r  420 (463)
T KOG0270|consen  362 PGKPVWTLKA------------HDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSP-------KSV-KEHSFKLGR  420 (463)
T ss_pred             CCCceeEEEe------------ccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCC-------ccc-ccccccccc
Confidence            6 88888887            7799999999987665 588999999999999986553       111 13332   2


Q ss_pred             eeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCC
Q 016457          323 VRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       323 v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..|.         ++.|+-. +|+.||..+.+++||+...
T Consensus       421 l~c~---------~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  421 LHCF---------ALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             eeec---------ccCCCcceEEEecCccceEEEeecccC
Confidence            2333         5555543 4678888889999998765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.3e-25  Score=191.95  Aligned_cols=322  Identities=16%  Similarity=0.173  Sum_probs=241.1

Q ss_pred             CccccCCCCeEEEEecCce----eee-----eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCC
Q 016457           13 KSQSCDNVNSIKRFGLKNS----IQT-----NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGH   79 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~----~~~-----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~   79 (389)
                      ..-+++.|.++.+|...+.    +..     .-| .......-|+|+++.+++-+..|..++|..++.   .....+.||
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH  360 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH  360 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence            4567899999999987642    111     112 455889999999999999999999999983321   344556899


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------------------------------------------
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------------------------------------------  114 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------------------------------------------  114 (389)
                      .+.|.+++|.|.|  ++|++.+.|.+-|+|-.-..                                             
T Consensus       361 ~~~V~dv~W~psG--eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk  438 (764)
T KOG1063|consen  361 VDGVKDVDWDPSG--EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK  438 (764)
T ss_pred             cccceeeeecCCC--CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence            9999999999999  79999999999888753300                                             


Q ss_pred             -----------------------------------------------------------------------------eEE
Q 016457          115 -----------------------------------------------------------------------------HEV  117 (389)
Q Consensus       115 -----------------------------------------------------------------------------~~~  117 (389)
                                                                                                   -.+
T Consensus       439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv  518 (764)
T KOG1063|consen  439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV  518 (764)
T ss_pred             HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence                                                                                         112


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      +++.+|...|.+++.+|+++.+++++.     ...|++|+..+...++.+. +|.-.|+.|+|+|+++ +|++.+.|+++
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~-~LLsvsRDRt~  596 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGR-YLLSVSRDRTV  596 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECCCCc-EEEEeecCceE
Confidence            334567788999999998888888876     3579999999888888888 9999999999999996 99999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCC
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      .+|.................|..-|.+..|+ |++.++++++.|++|++|.....  +.+..+...+          +..
T Consensus       597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~-pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~----------~~~  665 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWS-PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK----------FSL  665 (764)
T ss_pred             EeeeeecccchhhhhccccccceEEEEcccC-cccceeEEecCCceEEEEeccCchhhhhhhhchhc----------cCC
Confidence            9999864433333344467788999999999 77888999999999999998877  4444433222          668


Q ss_pred             ceeeecccCCC---CeEEEEEecCCceEEEEEeccC-CccccCC-----CeEEEecccceeeeeccCCCcccCCCCCCC-
Q 016457          271 YFVDCHYPGEG---ENLWVIGGTGAGTVGYFPVNYG-GAATIGP-----PEAVLVGGHTAVVRSVLPMPSVQGRPAQSH-  340 (389)
Q Consensus       271 ~i~~~~~~~~~---~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~-  340 (389)
                      .|+.+++.|-.   +.-.++.|-+.|.|.+|..... +....+.     .+... .+|...|+.+         .|+|. 
T Consensus       666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~aV~rl---------~w~p~~  735 (764)
T KOG1063|consen  666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT-IGPDSAVNRL---------LWRPTC  735 (764)
T ss_pred             ceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc-cChHHhhhee---------Eecccc
Confidence            89998887742   1115788999999999986521 1111110     01111 2456667776         55533 


Q ss_pred             ---------ceeEEEecCCCeEEEEecc
Q 016457          341 ---------GIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       341 ---------~~~l~s~~~dg~v~iW~~~  359 (389)
                               ...|++|++|..+|+++++
T Consensus       736 ~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  736 SDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccccccccceeEEeeecccceeEEeecc
Confidence                     3457999999999999875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=185.09  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=225.7

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceee--eeecCCC-Cc
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYS--GECKGHS-ST   82 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~-~~   82 (389)
                      |..-+++.|+++++|.+..    .++.+.- ..+|.+..|.|+|. .+++++.....+.||+.+.+..  ....++. ..
T Consensus       226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~  305 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS  305 (514)
T ss_pred             ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence            4456789999999999853    3444444 88999999999998 8999999999999999987643  3344443 45


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      +.....+|++  ++|+..+..|.|.+-...+++.+.+++. .+.|..++|+.++..|++++.+|.|.+||++...++.++
T Consensus       306 ~e~FeVShd~--~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  306 MERFEVSHDS--NFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             hheeEecCCC--CeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            7778889999  7999999999999999999999999987 589999999999999999999999999999999999888


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC--CCCccceeeeccCCceeeEEEecCCCcEEEEEec--CCc
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI--NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--IET  238 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~  238 (389)
                      .....-.-++++.++++. +||+|+..|.|.|||..+..  ...+++..+......|+++.|+ ++.++|+.++.  +..
T Consensus       383 ~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn-~d~qiLAiaS~~~kna  460 (514)
T KOG2055|consen  383 VDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN-HDAQILAIASRVKKNA  460 (514)
T ss_pred             eecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC-cchhhhhhhhhccccc
Confidence            732233346778889996 99999999999999977432  2356677777778899999999 78888887775  568


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +++-.+.+......++....         ..+.+++++|+|.+.  |++.|..+|.+.+|.+.
T Consensus       461 lrLVHvPS~TVFsNfP~~n~---------~vg~vtc~aFSP~sG--~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  461 LRLVHVPSCTVFSNFPTSNT---------KVGHVTCMAFSPNSG--YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eEEEeccceeeeccCCCCCC---------cccceEEEEecCCCc--eEEeecCCCceeeEeec
Confidence            99988887777766665321         347899999999998  99999999999999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.3e-24  Score=184.46  Aligned_cols=313  Identities=10%  Similarity=0.077  Sum_probs=236.5

Q ss_pred             ccccCCCCeEEEEecCc---eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           14 SQSCDNVNSIKRFGLKN---SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      .|-+-.+|.|.+|++..   +...+.+  +..|-+++|++.+ .|.+.+.+|.|.-||+.+++....+....+.|++++.
T Consensus        40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai  118 (691)
T KOG2048|consen   40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI  118 (691)
T ss_pred             eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence            56677899999999974   4455666  8899999999655 6777777999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---  163 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---  163 (389)
                      +|.+  ..++.|+.||.+..++...++....  +...++.|.+++|+|++..++.|+.||.|++||..++..+....   
T Consensus       119 ~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~  196 (691)
T KOG2048|consen  119 NPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL  196 (691)
T ss_pred             CCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc
Confidence            9998  7999999999888888877766543  33447899999999999999999999999999999887765222   


Q ss_pred             ----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          164 ----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       164 ----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                          ....--|.++.|-.++  .|++|...|+|.+||...+    ..+.....|...|.+++.. ++++.+++++.|+.|
T Consensus       197 d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  197 DRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKI  269 (691)
T ss_pred             cccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEc-CCCCeEEEccCCCce
Confidence                1123347788888764  8999999999999999954    5677778899999999998 778899999999999


Q ss_pred             EEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc
Q 016457          240 SIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH  319 (389)
Q Consensus       240 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h  319 (389)
                      ..|...+.+..-.....+.        .|...+.+++..++    .+++|+.|+.+.+-.....+.           ..|
T Consensus       270 i~~~~~~~~~~wv~~~~r~--------~h~hdvrs~av~~~----~l~sgG~d~~l~i~~s~~~~~-----------~~h  326 (691)
T KOG2048|consen  270 IQYSLTTNKSEWVINSRRD--------LHAHDVRSMAVIEN----ALISGGRDFTLAICSSREFKN-----------MDH  326 (691)
T ss_pred             EEEEecCCccceeeecccc--------CCcccceeeeeecc----eEEecceeeEEEEccccccCc-----------hhh
Confidence            9998876644221111111        27788999999886    689999999999987765332           123


Q ss_pred             ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCccc
Q 016457          320 TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEI  364 (389)
Q Consensus       320 ~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~  364 (389)
                      .  -...+|.....  ...+..+.++.-. +..+.+|.+......
T Consensus       327 ~--~~~~~p~~~~v--~~a~~~~L~~~w~-~h~v~lwrlGS~~~~  366 (691)
T KOG2048|consen  327 R--QKNLFPASDRV--SVAPENRLLVLWK-AHGVDLWRLGSVILQ  366 (691)
T ss_pred             h--cccccccccee--ecCccceEEEEec-cccccceeccCcccc
Confidence            3  11222222332  3334444444433 456777777766433

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.9e-28  Score=208.70  Aligned_cols=245  Identities=17%  Similarity=0.253  Sum_probs=211.7

Q ss_pred             eEEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457           22 SIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS  101 (389)
Q Consensus        22 ~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~  101 (389)
                      .+++|+..+...   +...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.|++..  .+|++|.
T Consensus        15 ~Lr~~~~~~~~~---hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E--~Llaags   89 (825)
T KOG0267|consen   15 KLRVWDTREFVA---HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE--RLLAAGS   89 (825)
T ss_pred             ccccccchhhhh---hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch--hhhcccc
Confidence            455666443211   14566677766677899999999999999988777788899999999999999988  7999999


Q ss_pred             cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457          102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      .+|+|++||+...+.++++.+|...+.++.|+|.+.+.+.++.|+.+++||++...+...+. +|...+.++.|+|+|. 
T Consensus        90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr-  167 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR-  167 (825)
T ss_pred             cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-
Confidence            99999999999999999999999999999999999999888889999999999888999998 7999999999999997 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS  261 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  261 (389)
                      +++.+++|..++|||+..+    +....+..|...+..+.|+ +..-+++.|+.|+++++||+++.+.+.....      
T Consensus       168 ~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~------  236 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFEVISSGKP------  236 (825)
T ss_pred             eeeccCCcceeeeeccccc----ccccccccccccccccccC-chhhhhccCCCCceeeeeccceeEEeeccCC------
Confidence            9999999999999999844    5667777899999999998 6667889999999999999998888777665      


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGA  292 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d  292 (389)
                            ....|.+..|+|++.  .+.+|...
T Consensus       237 ------~~~~v~~~~fn~~~~--~~~~G~q~  259 (825)
T KOG0267|consen  237 ------ETDGVRSLAFNPDGK--IVLSGEQI  259 (825)
T ss_pred             ------ccCCceeeeecCCce--eeecCchh
Confidence                  347899999999998  66777554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=179.58  Aligned_cols=254  Identities=14%  Similarity=0.171  Sum_probs=188.9

Q ss_pred             CcceEEEeecCCC--CeEEEEecCCeEEEEeCCC----------------ceeeeeecCCCCcEEEEEEeCCCCCCEEEE
Q 016457           38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVT----------------GQYSGECKGHSSTVNQISFSGPSTPHVLHS   99 (389)
Q Consensus        38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s   99 (389)
                      .+.++.+.-.+-+  .+.|+=+..|.|+||++..                .+++.++.+|...=.+++|+|-.. ..|+|
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~Lls  229 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GRLLS  229 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-ccccc
Confidence            4455555555544  4555666789999999731                246778889999999999999553 37999


Q ss_pred             EecCCeEEEEEccCCeEE---EEEEcCCCCeEEEEEeCCCCeEEEe-ecCCeEEEEECcCCc---eeeeeeecccCCeeE
Q 016457          100 CSSDGTIRAWDTRSFHEV---WSVTAGSQEIFCFSFGGSTDYLLAA-GCGSQIQFWDWRNKK---QVACLEESHVEDVTQ  172 (389)
Q Consensus       100 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~  172 (389)
                      |..-+.|++|...++.-.   ..|.+|...|..++|+|....++++ +.||+|+|||+|.+.   .+.+ + +|.+.|+.
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-Ah~sDVNV  307 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K-AHNSDVNV  307 (440)
T ss_pred             CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e-ccCCceee
Confidence            999999999999887532   3466799999999999987766555 459999999999883   2333 3 89999999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--  250 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--  250 (389)
                      |.|+...+ +|++|+.||+++|||+|..+ ...++..+..|..+|+++.|+|.+...|++++.|.+|.+||+....-.  
T Consensus       308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  308 ISWNRREP-LLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             EEccCCcc-eeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            99999987 99999999999999999654 447888999999999999999888889999999999999998632110  


Q ss_pred             ---EEeecccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          251 ---ASFENARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       251 ---~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                         ....+...++.+ .+-..-...+-.+.|+++-.. +|++.+.|| +.||
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG-~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG-LLVSTAIDG-FNVF  435 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCC-eEEEecccc-eeEE
Confidence               000000000000 000012356778899988666 577777888 4444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.4e-27  Score=212.00  Aligned_cols=272  Identities=17%  Similarity=0.259  Sum_probs=219.2

Q ss_pred             cccCCCCeEEEEecCc--------eeeeeecCcceEEEeecCCCCe----EEEEecCCeEEEEeCCC---c---eeeeee
Q 016457           15 QSCDNVNSIKRFGLKN--------SIQTNFGDDYVFEIVPKNDWSL----MAVSLSTNVVKLYSPVT---G---QYSGEC   76 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~~--------~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~iw~~~~---~---~~~~~~   76 (389)
                      ++.+.+.++.+|.+..        .+-.+......+.++|.+.|..    ||.|..||.|.+||...   +   ..+.++
T Consensus        33 ~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~  112 (1049)
T KOG0307|consen   33 ASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK  112 (1049)
T ss_pred             cccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh
Confidence            3456677777777642        1222222778899999987765    89999999999999764   2   345667


Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW  153 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~  153 (389)
                      ..|++.|..+.|++... ++|++|+.||.|.|||+...+.-.+..  ...+.|.+++|+..-.++++++. +|.+.|||+
T Consensus       113 ~~h~G~V~gLDfN~~q~-nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl  191 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQG-NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL  191 (1049)
T ss_pred             cccCCceeeeeccccCC-ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence            78999999999999884 699999999999999998754433331  13678999999977677666655 789999999


Q ss_pred             cCCceeeeeeecccC--CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          154 RNKKQVACLEESHVE--DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       154 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      |..+++..+. .+..  .+..++|+|+....+++++.|.   .|.+||+|.   ...+++.+..|...|.++.|++.|..
T Consensus       192 r~~~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---assP~k~~~~H~~GilslsWc~~D~~  267 (1049)
T KOG0307|consen  192 RKKKPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---ASSPLKILEGHQRGILSLSWCPQDPR  267 (1049)
T ss_pred             cCCCcccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc---cCCchhhhcccccceeeeccCCCCch
Confidence            9998888776 3333  4788999999988888888764   499999993   34566777899999999999988889


Q ss_pred             EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          229 HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +|++++.|+.|.+|+.++++.+..+..            ...++..+.|.|.... .+++.+.||.|.||.+.+..
T Consensus       268 lllSsgkD~~ii~wN~~tgEvl~~~p~------------~~nW~fdv~w~pr~P~-~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGEVLGELPA------------QGNWCFDVQWCPRNPS-VMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhcccCCCCeeEecCCCceEeeecCC------------CCcceeeeeecCCCcc-hhhhheeccceeeeeeecCC
Confidence            999999999999999999999999886            3488999999998764 46888999999999998765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.4e-25  Score=195.45  Aligned_cols=252  Identities=13%  Similarity=0.159  Sum_probs=206.2

Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  155 (389)
                      .+|+...+.|+|.|+|  ++|++++.||.|++|+..+. +.-.++..+...|.+++.  ...++++++.+++|.+|.+.+
T Consensus        10 yaht~G~t~i~~d~~g--efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG--EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcCCC--CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            3588899999999999  79999999999999998765 444445546788888887  466999999999999999998


Q ss_pred             CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457          156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      ++.-..+. ...-++++++++.+|. +++.|+.|-.|++.++..    ......+.+|..+|.++.|+ |++++|++.+.
T Consensus        86 ~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl~l~~~-p~~~fLAvss~  158 (933)
T KOG1274|consen   86 GEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVLQLSYD-PKGNFLAVSSC  158 (933)
T ss_pred             CCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccc----cchheeecccCCceeeeeEc-CCCCEEEEEec
Confidence            87655555 5668899999999995 999999999999999984    35677888999999999999 78899999999


Q ss_pred             CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEE
Q 016457          236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL  315 (389)
Q Consensus       236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~  315 (389)
                      ||.|++||+.++.+.+++.+...-...    .....+..++|+|++.  -++....|+.|++|+..+...      ...+
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~----~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~------~f~L  226 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEF----ILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWEL------QFKL  226 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccc----cccceeeeeeecCCCC--eEEeeccCCeEEEEccCCcee------heee
Confidence            999999999999888777654321111    0235678899999977  446666899999999988665      4444


Q ss_pred             ecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          316 VGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       316 ~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      ...+. ..+..+         .|||.|+|||+++.||.|-|||.+.
T Consensus       227 r~~~~ss~~~~~---------~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  227 RDKLSSSKFSDL---------QWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccccccceEEE---------EEcCCCcEEeeeccCCcEEEEeccc
Confidence            43333 337777         9999999999999999999999995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-24  Score=168.74  Aligned_cols=259  Identities=19%  Similarity=0.274  Sum_probs=188.2

Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEE
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQF  150 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  150 (389)
                      .+|.+-|+++.|.+.|  +.+++|+.|++|+|||.++.    .+....+.|.+.|..+.|.+.  |+.+++++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~G--RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYG--RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccC--ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            3688999999999999  79999999999999997543    466778899999999999643  566777777999999


Q ss_pred             EECcC---------CceeeeeeecccCCeeEEEEecCC-CCeEEEEeCCCcEEEEecCCCCCC--Cccceee-------e
Q 016457          151 WDWRN---------KKQVACLEESHVEDVTQVHFVPNN-QNKVVSASVDGLICTFDTGGDIND--DDLLESV-------I  211 (389)
Q Consensus       151 wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~-------~  211 (389)
                      |.-..         .....++. .....|+.+.|.|.. .-.+++++.||.++||+.-...+.  .....++       .
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            97521         12234454 567889999999963 147999999999999998633211  1111111       1


Q ss_pred             ccCCceeeEEEecC--CCcEEEEEecC-----CcEEEEEcCCCc----eeEEeecccccccCCccCCCCCceeeecccCC
Q 016457          212 NVGTSVGKVGFFGE--TNKHLWCLTHI-----ETLSIWDWKDGQ----NVASFENARSLASDSWTLDDVDYFVDCHYPGE  280 (389)
Q Consensus       212 ~~~~~i~~~~~~~~--~~~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (389)
                      .+..+..++.|++.  ...+|++|+.+     +.++||......    .+.++.+            |.++|.+++|.|+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d------------~~dpI~di~wAPn  234 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD------------HTDPIRDISWAPN  234 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC------------CCCcceeeeeccc
Confidence            34567788888742  23577777766     478888765432    2223333            8899999999998


Q ss_pred             CCe--EEEEEecCCceEEEEEeccCCc--------c-----ccC-CCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          281 GEN--LWVIGGTGAGTVGYFPVNYGGA--------A-----TIG-PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       281 ~~~--~~l~~g~~dg~i~i~~~~~~~~--------~-----~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                      -.+  -+|++++.|| |+||.+.....        .     .+. ..+..+ .+|.+.|..+         .|+-.|..|
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv---------~wNmtGtiL  303 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRV---------RWNMTGTIL  303 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEE---------EEeeeeeEE
Confidence            432  2478999999 99999984220        0     000 112233 4899999999         999999999


Q ss_pred             EEecCCCeEEEEeccCC
Q 016457          345 WTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~~  361 (389)
                      +|.|.||+||+|+.+-.
T Consensus       304 sStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKANYN  320 (361)
T ss_pred             eecCCCceeeehhhhhh
Confidence            99999999999997744

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.5e-24  Score=166.81  Aligned_cols=269  Identities=16%  Similarity=0.195  Sum_probs=205.8

Q ss_pred             ccccCCCCeEEEEecCcee---------e-----eee---c-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeee
Q 016457           14 SQSCDNVNSIKRFGLKNSI---------Q-----TNF---G-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSG   74 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~~~---------~-----~~~---~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~   74 (389)
                      --+++.||.|-+||+++..         +     .-.   + +-+|.++.|-| |...+.+++.|.++++||.++.+...
T Consensus        59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~  138 (397)
T KOG4283|consen   59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV  138 (397)
T ss_pred             EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence            4578899999999986411         0     011   1 56788888888 55688899999999999999998888


Q ss_pred             eecCCCCcEEEEEEeCCCCC-CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEE
Q 016457           75 ECKGHSSTVNQISFSGPSTP-HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWD  152 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd  152 (389)
                      .|+ ..+.|..-+++|-... -++|+|..|-.|++-|+.+|...+++.+|...|.++.|+|...+++++++ ||.|++||
T Consensus       139 ~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD  217 (397)
T KOG4283|consen  139 DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD  217 (397)
T ss_pred             Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence            887 5678888889885431 36777888889999999999999999999999999999999998777665 99999999


Q ss_pred             CcCC-ceeeee-------------eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---C
Q 016457          153 WRNK-KQVACL-------------EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---T  215 (389)
Q Consensus       153 ~~~~-~~~~~~-------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~  215 (389)
                      ++.. .+...+             ..+|.+.+..++|..++. ++++++.|..+++|+..++.+...........+   -
T Consensus       218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~  296 (397)
T KOG4283|consen  218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF  296 (397)
T ss_pred             eecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccccccccccc
Confidence            9853 122111             136888999999999996 999999999999999997754333222221111   1


Q ss_pred             ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          216 SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      .+. +. + .+...++.--.++.+.++++-.+..+..+..            |-..+.+..+-|+-+  -..+|..|+.|
T Consensus       297 ~~~-~~-~-~~s~vfv~~p~~~~lall~~~sgs~ir~l~~------------h~k~i~c~~~~~~fq--~~~tg~~d~ni  359 (397)
T KOG4283|consen  297 AVH-IQ-S-MDSDVFVLFPNDGSLALLNLLEGSFVRRLST------------HLKRINCAAYRPDFE--QCFTGDMNGNI  359 (397)
T ss_pred             eEE-Ee-e-cccceEEEEecCCeEEEEEccCceEEEeeec------------ccceeeEEeecCchh--hhhccccCCcc
Confidence            111 22 2 2333444445568999999999999998887            558899999999887  45899999999


Q ss_pred             EEEEec
Q 016457          296 GYFPVN  301 (389)
Q Consensus       296 ~i~~~~  301 (389)
                      ..|...
T Consensus       360 ~~w~p~  365 (397)
T KOG4283|consen  360 YMWSPA  365 (397)
T ss_pred             cccccc
Confidence            999774

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=187.19  Aligned_cols=273  Identities=16%  Similarity=0.159  Sum_probs=197.7

Q ss_pred             CccccCCCCeEEEEecCceeee-----ee----cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee--ecCCCC
Q 016457           13 KSQSCDNVNSIKRFGLKNSIQT-----NF----GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE--CKGHSS   81 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~~~~-----~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~   81 (389)
                      ..|-+..+|.|.++|.......     +.    +..+|..+.|-|....|++++.|.++++||++++++...  +.+|..
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~  145 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG  145 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence            4555677899999998642222     22    278999999999778899999999999999999888776  889999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---------------------------EEEEEEcCC----CCeEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH---------------------------EVWSVTAGS----QEIFCF  130 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~----~~v~~~  130 (389)
                      .|.+++|.|.+. ..|++|+.||.|.|||++-..                           .+...+.+.    +.|+.+
T Consensus       146 SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv  224 (720)
T KOG0321|consen  146 SVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV  224 (720)
T ss_pred             ccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence            999999999885 799999999999999987321                           011112222    235556


Q ss_pred             EEeCCCCeEEEeec-CCeEEEEECcCCceeeeee-------ecc---cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          131 SFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE-------ESH---VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       131 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~-------~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      .|- ++..|+++|. |+.|++||++.........       ..|   ...+.++.....|. +|++.+.|+.|+.|++.+
T Consensus       225 ~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  225 LFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccc
Confidence            665 8888998888 9999999999765432221       012   23477888888886 666666699999999995


Q ss_pred             CCCCCccceeeeccCC-c-eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-EeecccccccCCccCCCCCceeeec
Q 016457          200 DINDDDLLESVINVGT-S-VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       200 ~~~~~~~~~~~~~~~~-~-i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      ..  ..++..+.++.. . -..-..+ +++.++++|+.|...++|.+.+.+.-- .+.+            |.-.|+.++
T Consensus       303 ~s--~sP~~~~sg~~~~sf~vks~lS-pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G------------ht~eVt~V~  367 (720)
T KOG0321|consen  303 LS--ISPVAEFSGKLNSSFYVKSELS-PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG------------HTREVTTVR  367 (720)
T ss_pred             cC--cCchhhccCcccceeeeeeecC-CCCceEeccCCCcceeeeeecCccCChhhhhC------------cceEEEEEe
Confidence            42  122222222211 1 1122234 788999999999999999998765433 3333            778899999


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      |.|.... =+++++.|..++||++..+-
T Consensus       368 w~pS~~t-~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  368 WLPSATT-PVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eccccCC-CceeeccCcceEEEeccCch
Confidence            9886433 25777999999999996653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=2.4e-24  Score=170.12  Aligned_cols=300  Identities=15%  Similarity=0.168  Sum_probs=215.0

Q ss_pred             CcceEEEeecC-----CCCeEEEEecCCeEEEEeCCCc---eeeeeec--CCCCcEEEEEEeCCCC--CCEEEEEecCCe
Q 016457           38 DDYVFEIVPKN-----DWSLMAVSLSTNVVKLYSPVTG---QYSGECK--GHSSTVNQISFSGPST--PHVLHSCSSDGT  105 (389)
Q Consensus        38 ~~~v~~~~~~~-----~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~--~~~~~v~~i~~~~~~~--~~~l~s~~~dg~  105 (389)
                      +.+|..++|++     .-..+|+++ ...+.+|.....   ..++.+.  .|.+....++|+-+..  ..++|.|+.-|.
T Consensus        38 ~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   38 NKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            67899999984     224667766 567889986532   3344442  3777888899976532  258999999999


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeE-EEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCe
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYL-LAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~  182 (389)
                      |+|.|+.+++....+.+|...|+.+.++|...++ ++++.|..|++|++++..++..+-  ++|...|.++.|++++. +
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~  195 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-R  195 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-e
Confidence            9999999999999999999999999999987654 555669999999999999887765  48999999999999997 9


Q ss_pred             EEEEeCCCcEEEEecCCCCC--------------CC-------cc---ceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457          183 VVSASVDGLICTFDTGGDIN--------------DD-------DL---LESVINVGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~--------------~~-------~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      |++++.|..+++|++....-              ..       ..   ......|...|.++.|.   ++++++-+.++.
T Consensus       196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscena  272 (385)
T KOG1034|consen  196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENA  272 (385)
T ss_pred             eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCce
Confidence            99999999999999983210              00       00   01223466777888887   468999999999


Q ss_pred             EEEEEc-CCCceeEEeecccccccC--CccCCCCCce--eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE
Q 016457          239 LSIWDW-KDGQNVASFENARSLASD--SWTLDDVDYF--VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       239 i~i~d~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~i--~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~  313 (389)
                      |..|.. +-.+.++...........  .... ....+  ...+|.|-++  +|+.|...|.|++||++......    ..
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~--~la~gnq~g~v~vwdL~~~ep~~----~t  345 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQK--MLALGNQSGKVYVWDLDNNEPPK----CT  345 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHH--HHhhccCCCcEEEEECCCCCCcc----Cc
Confidence            999987 222222211110000000  0000 11233  4445566566  89999999999999999876521    12


Q ss_pred             EEe-cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          314 VLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       314 ~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      ++. ......|+..         +||.||.+|+...+|++|.-||.
T Consensus       346 tl~~s~~~~tVRQ~---------sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  346 TLTHSKSGSTVRQT---------SFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eEEeccccceeeee---------eecccCcEEEEEeCCCcEEEEEe
Confidence            222 1123567777         99999999999999999999885

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.5e-24  Score=167.49  Aligned_cols=268  Identities=18%  Similarity=0.259  Sum_probs=202.1

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeee---cCcceEEEeecCCCCeEEEEec-CCeEEEEeCCC---ceeeee-----
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNF---GDDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVT---GQYSGE-----   75 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~---~~~~~~-----   75 (389)
                      -..||++.|++|++|+++.    .-+.++   .-+..+.+.|.||-+.+++... ..++++|.+..   |.....     
T Consensus        99 K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D  178 (420)
T KOG2096|consen   99 KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID  178 (420)
T ss_pred             ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccccc
Confidence            3578999999999999863    112222   2446789999999977666655 55899997643   221111     


Q ss_pred             ----ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEE
Q 016457           76 ----CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFW  151 (389)
Q Consensus        76 ----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  151 (389)
                          -+.|.-.|..+-...++  .+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|..+++++.-..|++|
T Consensus       179 ~~~f~~kh~v~~i~iGiA~~~--k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw  255 (420)
T KOG2096|consen  179 NLEFERKHQVDIINIGIAGNA--KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW  255 (420)
T ss_pred             ccccchhcccceEEEeecCCc--eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence                12366667777776666  799999999999999998 99999998887888889999999999999999999999


Q ss_pred             ECcC---C-----ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC---CCcccee----eeccCCc
Q 016457          152 DWRN---K-----KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---DDDLLES----VINVGTS  216 (389)
Q Consensus       152 d~~~---~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~----~~~~~~~  216 (389)
                      .+--   |     ..+.++. +|...|..++|+++.. .+++.+.||++++||+.-.-.   ....+..    +....+.
T Consensus       256 E~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~  333 (420)
T KOG2096|consen  256 EPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE  333 (420)
T ss_pred             EEEeccCcchhhhhhhheec-cchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence            8642   2     2356677 9999999999999996 999999999999999873211   1111111    1122344


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      ...++++ |+++.|+++ ....|++|..++++....+...           |...|.+++|+++|+  |++++ .|..++
T Consensus       334 p~RL~ls-P~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~-----------h~~~Is~is~~~~g~--~~atc-Gdr~vr  397 (420)
T KOG2096|consen  334 PVRLELS-PSGDSLAVS-FGSDLKVFASEDGKDYPELEDI-----------HSTTISSISYSSDGK--YIATC-GDRYVR  397 (420)
T ss_pred             ceEEEeC-CCCcEEEee-cCCceEEEEcccCccchhHHHh-----------hcCceeeEEecCCCc--EEeee-cceeee
Confidence            4588999 777766554 5568999999998877777654           889999999999999  88888 467788


Q ss_pred             EEEe
Q 016457          297 YFPV  300 (389)
Q Consensus       297 i~~~  300 (389)
                      ++.-
T Consensus       398 v~~n  401 (420)
T KOG2096|consen  398 VIRN  401 (420)
T ss_pred             eecC
Confidence            8753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=1e-24  Score=181.20  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=203.0

Q ss_pred             ccccCCCCeEEEEecCce---eeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           14 SQSCDNVNSIKRFGLKNS---IQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~~---~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      .|+.+.|..|++|.....   +.....  .+.-.|++......++++|+..+.|+|||++...+.+.+++|+..|+++.+
T Consensus        50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y  129 (673)
T KOG4378|consen   50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY  129 (673)
T ss_pred             EeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence            466778888999986543   222222  445566666666689999999999999999977777888999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecc
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +...  .+||+++..|.|.|..+.++.....|... ...|.-+.|+|....+++.. .+|.|.+||+....++..+...|
T Consensus       130 N~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H  207 (673)
T KOG4378|consen  130 NNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH  207 (673)
T ss_pred             cCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence            9887  79999999999999999999888888766 45566899999888777654 58999999999888888887789


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ..+...|+|+|..+.+|++.+.|..|.+||.+...     .........+...++|. ++|.+|++|...|.|..||++.
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~l~y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDRLTYSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeeccccc-----ccceeeecCCcceeeec-CCceEEEeecCCceEEEEeccc
Confidence            99999999999988899999999999999999532     23333456789999999 8999999999999999999986


Q ss_pred             C-ceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457          247 G-QNVASFENARSLASDSWTLDDVDYFVDCHYPGE  280 (389)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (389)
                      . .++..+..            |...|++++|-+.
T Consensus       282 ~k~Pv~v~sa------------h~~sVt~vafq~s  304 (673)
T KOG4378|consen  282 TKAPVAVRSA------------HDASVTRVAFQPS  304 (673)
T ss_pred             CCCCceEeee------------cccceeEEEeeec
Confidence            5 45556655            6678999998775

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.6e-24  Score=167.15  Aligned_cols=248  Identities=17%  Similarity=0.180  Sum_probs=190.3

Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      ..|+.|++.|  .+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|..|++++.|..|.+||+..+.+++++
T Consensus        26 a~~~~Fs~~G--~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWG--DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCc--ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            7899999999  79999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCcEEEEEecC
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~d  236 (389)
                      .  ..++|....|+|...+.+++.-.+..-.+.++...      .......      .....+..|. +.|+++++|...
T Consensus       104 r--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~------~h~~Lp~d~d~dln~sas~~~fd-r~g~yIitGtsK  174 (405)
T KOG1273|consen  104 R--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP------KHSVLPKDDDGDLNSSASHGVFD-RRGKYIITGTSK  174 (405)
T ss_pred             E--ccCccceeeeccccCCeEEEEEecCCcEEEEecCC------ceeeccCCCcccccccccccccc-CCCCEEEEecCc
Confidence            7  78999999999998777777766666666666522      2221111      1112223455 789999999999


Q ss_pred             CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457          237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      |.+.++|..+.+++..+...           ....|..+.++..|+  +++.-+.|..|+.|++..-.....+   ....
T Consensus       175 Gkllv~~a~t~e~vas~rit-----------s~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~---~e~e  238 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRIT-----------SVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRD---GEVE  238 (405)
T ss_pred             ceEEEEecchheeeeeeeec-----------hheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCcc---CCcC
Confidence            99999999999999888752           126788999999999  8899999999999998732110000   0111


Q ss_pred             cccc--eeeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccCC
Q 016457          317 GGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDDS  361 (389)
Q Consensus       317 ~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~~  361 (389)
                      ..|.  ..|+.+  .-+  .++||.+|.|++.|+ .-..++||.-..+
T Consensus       239 ~~~K~qDvVNk~--~Wk--~ccfs~dgeYv~a~s~~aHaLYIWE~~~G  282 (405)
T KOG1273|consen  239 PEHKLQDVVNKL--QWK--KCCFSGDGEYVCAGSARAHALYIWEKSIG  282 (405)
T ss_pred             hhHHHHHHHhhh--hhh--heeecCCccEEEeccccceeEEEEecCCc
Confidence            1121  222222  111  238999999988876 4457999998766

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=5.7e-24  Score=165.14  Aligned_cols=278  Identities=16%  Similarity=0.164  Sum_probs=206.0

Q ss_pred             CCCCeEEEEecCc-----eeeeeec-CcceEEEeecCCC-CeEEEEecC-------CeEEEEeCCCc---------eeee
Q 016457           18 DNVNSIKRFGLKN-----SIQTNFG-DDYVFEIVPKNDW-SLMAVSLST-------NVVKLYSPVTG---------QYSG   74 (389)
Q Consensus        18 ~~~~~i~~w~~~~-----~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d-------~~i~iw~~~~~---------~~~~   74 (389)
                      -.++.|.+.++..     ..+.+.+ .+.|..++-+|-. ++|+++..+       ..+.||.+...         +++.
T Consensus        37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            3456676666642     2234455 8899999999955 566666542       25789987642         2233


Q ss_pred             eec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE-EEEEEc-----CCCCeEEEEEeC-CCCeEEEeecCC
Q 016457           75 ECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-VWSVTA-----GSQEIFCFSFGG-STDYLLAAGCGS  146 (389)
Q Consensus        75 ~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~  146 (389)
                      .+. .+-+.|.|+.|.|++  ..+++-. |..|.+|++..+.. +..+..     +....++-+|+| .+...+++..|+
T Consensus       117 ~Ldteavg~i~cvew~Pns--~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~  193 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNS--DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS  193 (370)
T ss_pred             cCCHHHhCceeeEEEcCCC--CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence            343 355689999999988  6777765 78899999987655 333332     356788889999 566777778889


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      ++..||+|+.+....+..+|...|..+.|+|+.+.+|++++.||.|++||.|.   ...++..+.+|...|.++.|+|..
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---TKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---CCccccccCCCceEEEEEEecCcc
Confidence            99999999999999998899999999999999988999999999999999994   457788889999999999999888


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeEEee---------c------ccccccCC--ccCCCCCceeeecccCCCCeEEEEEe
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVASFE---------N------ARSLASDS--WTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~------~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .+++++++.|..|.+|....-.....+.         +      ++.+..+.  ---+|++.|.+++|+.-..- .+++-
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW-iFASL  349 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW-IFASL  349 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe-eEEEe
Confidence            8999999999999999865322111111         0      00000000  01238899999999987762 35778


Q ss_pred             cCCceEEEEEecc
Q 016457          290 TGAGTVGYFPVNY  302 (389)
Q Consensus       290 ~~dg~i~i~~~~~  302 (389)
                      +.||.+.|=.+..
T Consensus       350 SYDGRviIs~V~r  362 (370)
T KOG1007|consen  350 SYDGRVIISSVPR  362 (370)
T ss_pred             ccCceEEeecCCh
Confidence            9999998876653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=4e-24  Score=182.90  Aligned_cols=143  Identities=18%  Similarity=0.192  Sum_probs=114.8

Q ss_pred             CCccccCCCCeEEEEecC-ceeee-------eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCc
Q 016457           12 PKSQSCDNVNSIKRFGLK-NSIQT-------NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST   82 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~-~~~~~-------~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~   82 (389)
                      ...|+|+.|..|++|.+. ..-+.       +-+ +-.|-++.|+|...-|...+..|+++|||+.+++.+..+.+|.+.
T Consensus        93 ~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~  172 (1012)
T KOG1445|consen   93 ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDK  172 (1012)
T ss_pred             hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchh
Confidence            357899999999999986 22222       222 667889999997655555566899999999999999999999999


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEcCCCC-eEEEEEeCCCCeEEEeecC----CeEEEEECcCC
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTAGSQE-IFCFSFGGSTDYLLAAGCG----SQIQFWDWRNK  156 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~  156 (389)
                      |.+..|+.||  .+|++++.|+.|+|||.+ .+++++..++|.+. =..+.|.-+-.+|++.|.+    ..|++||.+..
T Consensus       173 vQSa~WseDG--~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f  250 (1012)
T KOG1445|consen  173 VQSADWSEDG--KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKF  250 (1012)
T ss_pred             hhccccccCC--ceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeecccc
Confidence            9999999999  799999999999999998 46788888888432 2346676455588888874    68999998753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.93  E-value=4.9e-24  Score=183.43  Aligned_cols=280  Identities=16%  Similarity=0.214  Sum_probs=216.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|+.++|-|||..|+.+. +..+.+||.+.|..+.++++|.+.|.+++|+.+|  +.++||+.|+.|.+|+..-.-.+
T Consensus        12 ~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG--krFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG--KRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             ccchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC--ceeccCCCceeEEEeccccccee
Confidence            34789999999998888776 5679999999999999999999999999999999  79999999999999986432222


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                       . ..|.+.|.|+.|+|-...+++++- ...-+|........ ..+  ....+.+.+|..+|. +++.|-.+|+|.+-+.
T Consensus        89 -k-YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~k--ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   89 -K-YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KHK--SSSRIICCSWTNDGQ-YLALGMFNGTISIRNK  161 (1081)
T ss_pred             -e-eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hhh--hheeEEEeeecCCCc-EEEEeccCceEEeecC
Confidence             2 247899999999998888877766 56678876544332 222  356788999999996 9999999999998865


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCC----cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETN----KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      ...  +...+...-+.+++|.+++|+|..+    +.+++.....++.+|.+. |+.+..-..            -.-...
T Consensus       162 ~gE--ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~------------L~FdP~  226 (1081)
T KOG1538|consen  162 NGE--EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA------------LNFDPC  226 (1081)
T ss_pred             CCC--cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc------------CCCCch
Confidence            522  2233333445778999999996543    467788888888888765 444432111            113356


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      ++.+.++|.  |++.|+.|+.+.+|--+.-.       +.++- .....|+++         +..|++++++.|..||+|
T Consensus       227 CisYf~NGE--y~LiGGsdk~L~~fTR~Gvr-------LGTvg-~~D~WIWtV---------~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  227 CISYFTNGE--YILLGGSDKQLSLFTRDGVR-------LGTVG-EQDSWIWTV---------QAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             hheeccCCc--EEEEccCCCceEEEeecCeE-------Eeecc-ccceeEEEE---------EEccCCceEEEEEccCee
Confidence            788999999  99999999999999765433       24443 456789999         899999999999999999


Q ss_pred             EEEeccCC
Q 016457          354 CCWLSDDS  361 (389)
Q Consensus       354 ~iW~~~~~  361 (389)
                      -.|++-.+
T Consensus       288 ACyNl~fS  295 (1081)
T KOG1538|consen  288 ACYNLIFS  295 (1081)
T ss_pred             ehhhhHHh
Confidence            99998755

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.5e-25  Score=202.24  Aligned_cols=286  Identities=10%  Similarity=0.151  Sum_probs=217.3

Q ss_pred             EEeecCCCC-eEEEEec----------CCeEEEEeCCC--c----eeeeeecCCCCcEEEEEEeCCCCCC--EEEEEecC
Q 016457           43 EIVPKNDWS-LMAVSLS----------TNVVKLYSPVT--G----QYSGECKGHSSTVNQISFSGPSTPH--VLHSCSSD  103 (389)
Q Consensus        43 ~~~~~~~~~-~l~~~~~----------d~~i~iw~~~~--~----~~~~~~~~~~~~v~~i~~~~~~~~~--~l~s~~~d  103 (389)
                      .++|+|++. ++|+|..          +.++.||.+..  .    +.+..+. -....+.++|.+.++..  +|+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            567888885 5555533          34566665432  2    2333333 34678999999887411  59999999


Q ss_pred             CeEEEEEccCC------eEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCceeeee-eecccCCeeEEEE
Q 016457          104 GTIRAWDTRSF------HEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACL-EESHVEDVTQVHF  175 (389)
Q Consensus       104 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~  175 (389)
                      |.|.+||...-      ..+.+...|.+.|..+.|++..+ .|++|+.||.|.|||+.+.+.-.+. .....+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999998752      34566778999999999999887 5555666999999999986554444 2135678999999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC--CceeeEEEecCCCcEEEEEecCC---cEEEEEcCCC-ce
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG--TSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDG-QN  249 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~-~~  249 (389)
                      +..-..+|++++.+|++.|||++..    +.+..+..+.  ..+..++|+|.+...+++++.|.   .|.+||++.. ..
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence            9887779999999999999999943    3344443333  35778999987777788887765   7999999865 45


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM  329 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  329 (389)
                      ++.+.+            |...|.++.|++.+.. +|++++.|+.|.+|+.++++.      +..+. .....+..+   
T Consensus       246 ~k~~~~------------H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEv------l~~~p-~~~nW~fdv---  302 (1049)
T KOG0307|consen  246 LKILEG------------HQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEV------LGELP-AQGNWCFDV---  302 (1049)
T ss_pred             hhhhcc------------cccceeeeccCCCCch-hhhcccCCCCeeEecCCCceE------eeecC-CCCcceeee---
Confidence            566655            7799999999998855 688999999999999999887      77776 567888999   


Q ss_pred             CcccCCCCCCCce-eEEEecCCCeEEEEeccCCc
Q 016457          330 PSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       330 ~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~~  362 (389)
                            .|.|... .++.++.||.|.|+.+....
T Consensus       303 ------~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  303 ------QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------eecCCCcchhhhheeccceeeeeeecCC
Confidence                  6666655 56888999999999998763

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=160.61  Aligned_cols=277  Identities=16%  Similarity=0.163  Sum_probs=203.2

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCce------------eeeeec-CCCCcEEEEEEe-------CCCCCCEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ------------YSGECK-GHSSTVNQISFS-------GPSTPHVLH   98 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~------------~~~~~~-~~~~~v~~i~~~-------~~~~~~~l~   98 (389)
                      .-...+.|+|||..|++-+.|..+.+|++...-            ....++ .....|...+|-       |+.  .+++
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--~l~a  127 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--NLFA  127 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--ceee
Confidence            345578899999999999999999999975210            011111 134568888886       344  6899


Q ss_pred             EEecCCeEEEEEccCCeEEEEEEcC--C---CCeEEEEEeCCCCeEEEeecCCeEEEEEC-cCCcee---eeee---ecc
Q 016457           99 SCSSDGTIRAWDTRSFHEVWSVTAG--S---QEIFCFSFGGSTDYLLAAGCGSQIQFWDW-RNKKQV---ACLE---ESH  166 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~---~~~~---~~~  166 (389)
                      +.+.+.-|.+||.-+|+...++...  .   ....+++|+|++.+|+++-. ..|++||+ |.+...   .++.   .+.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence            9999999999999999998887753  2   34568999999998887654 89999999 555321   2221   134


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWK  245 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~  245 (389)
                      .+-+.|++|+|.....++.|+....+-||.-..    ..++..+.+|++.|+.+.|. ++|+.|++|+. |-.|-.||++
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----RRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCC----CCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeeh
Confidence            677999999999877899999998888887763    35677777999999999999 77888888876 5689999998


Q ss_pred             CC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee
Q 016457          246 DG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR  324 (389)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~  324 (389)
                      .- .++..+..+..         ....-.-....|+++  +|++|+.||.|++||+.....     ++..+ ..|+..|+
T Consensus       282 ~~~~pv~~L~rhv~---------~TNQRI~FDld~~~~--~LasG~tdG~V~vwdlk~~gn-----~~sv~-~~~sd~vN  344 (406)
T KOG2919|consen  282 YSRDPVYALERHVG---------DTNQRILFDLDPKGE--ILASGDTDGSVRVWDLKDLGN-----EVSVT-GNYSDTVN  344 (406)
T ss_pred             hccchhhhhhhhcc---------CccceEEEecCCCCc--eeeccCCCccEEEEecCCCCC-----ccccc-cccccccc
Confidence            64 34444544321         112223345567777  999999999999999987321     13334 37888899


Q ss_pred             eccCCCcccCCCCCCCceeEEEecC
Q 016457          325 SVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                      .+         +++|-=.++++++.
T Consensus       345 gv---------slnP~mpilatssG  360 (406)
T KOG2919|consen  345 GV---------SLNPIMPILATSSG  360 (406)
T ss_pred             ce---------ecCcccceeeeccC
Confidence            99         77777666777763

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.9e-23  Score=165.80  Aligned_cols=301  Identities=12%  Similarity=0.127  Sum_probs=220.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC------ceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT------GQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      .+.|+++.|+.++++|++|+.|..+++|+++.      .+++.... .|...|.|++|...+  ..+++|+.+++|...|
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGTVIKHD  133 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcceeEeee
Confidence            78999999999999999999999999999853      24444443 366899999998776  7999999999999999


Q ss_pred             ccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeee-ecccCCeeEEEEecCCCCeEEEE
Q 016457          111 TRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLE-ESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       111 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      +.+.+.+..+...  .+.|..+..+|.++.+++.+.++.|.+||.+... +..-+. .........+.|+|..+.+|++.
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence            9999888777643  4689999999999999999999999999998765 222221 13456788999999998899999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeecc---CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVINV---GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      +..+-+.+||.+......-......+.   ...-.++.|+ ++|..|++.-....-.+||+...++...-..+....   
T Consensus       214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G---  289 (609)
T KOG4227|consen  214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG---  289 (609)
T ss_pred             cccCCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeecccceeEeccCCCCc---
Confidence            999999999999432111011111111   2234678898 667777776666666688887655432222211100   


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc----cccC-------------CCeEEEecccceeeeec
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA----ATIG-------------PPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~~~-------------~~~~~~~~~h~~~v~~~  326 (389)
                        +-....+.+++|..+-   -+++|+.+-.|++|.+.....    ..+|             ..+..+. ||...++.|
T Consensus       290 --Y~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-GHRSv~NQV  363 (609)
T KOG4227|consen  290 --YCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-GHRSVPNQV  363 (609)
T ss_pred             --ceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe-cccccccce
Confidence              0023456778887764   378999999999998753221    1122             2334454 899999999


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                               .|+|...+|++.|-...+++|.--
T Consensus       364 ---------RF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  364 ---------RFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ---------eecCCcceEeccchhhheeccccc
Confidence                     999999999999999999999654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=4.5e-23  Score=162.96  Aligned_cols=269  Identities=16%  Similarity=0.234  Sum_probs=199.6

Q ss_pred             cCCCCeEEEEecCc-----eeeeeec---CcceEEEeecCCC----CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           17 CDNVNSIKRFGLKN-----SIQTNFG---DDYVFEIVPKNDW----SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        17 ~~~~~~i~~w~~~~-----~~~~~~~---~~~v~~~~~~~~~----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      ....+.+.+|+...     .++....   .+..+.++|+.|-    .++|+|+.-|.|+|.|+.+++....+.+|...|+
T Consensus        60 tvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sIN  139 (385)
T KOG1034|consen   60 TVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSIN  139 (385)
T ss_pred             EeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccch
Confidence            34445677776532     2222222   5667788887643    4899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE---cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC  161 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  161 (389)
                      .|.|+|... +++++++.|.+|++|++++..++..|-   +|...|.++.|++++.+++++|.|.+|++|++...+....
T Consensus       140 eik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  140 EIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             hhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            999999875 899999999999999999999998874   6899999999999999999999999999999974321100


Q ss_pred             ---------------------------eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC----------C
Q 016457          162 ---------------------------LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND----------D  204 (389)
Q Consensus       162 ---------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------~  204 (389)
                                                 -..-|...|-|+.|--   +++++-+-++.|..|..-.-.+.          .
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~  295 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESAT  295 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccce
Confidence                                       0124666677777764   38899888999999987311100          1


Q ss_pred             ccceeeeccCCceeeEEEe-cCCCcEEEEEecCCcEEEEEcCCCcee--EEeecccccccCCccCCCCCceeeecccCCC
Q 016457          205 DLLESVINVGTSVGKVGFF-GETNKHLWCLTHIETLSIWDWKDGQNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ..+..+.-....|.-+.|. .+-++.|+.|...|.+.+||++...+.  .++....          ....|...+|+.|+
T Consensus       296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~----------~~~tVRQ~sfS~dg  365 (385)
T KOG1034|consen  296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK----------SGSTVRQTSFSRDG  365 (385)
T ss_pred             eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc----------ccceeeeeeecccC
Confidence            1122222233345555443 144678999999999999999877653  1222221          33778999999999


Q ss_pred             CeEEEEEecCCceEEEEEec
Q 016457          282 ENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~  301 (389)
                      .  +|+....|++|.-||..
T Consensus       366 s--~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  366 S--ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             c--EEEEEeCCCcEEEEEee
Confidence            9  88888899999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=9.3e-23  Score=165.51  Aligned_cols=273  Identities=13%  Similarity=0.138  Sum_probs=204.7

Q ss_pred             CccccCCCCeEEEEecCc-----------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC--------C---
Q 016457           13 KSQSCDNVNSIKRFGLKN-----------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV--------T---   69 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-----------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--------~---   69 (389)
                      ..||++.|..|++|.+..           ....+.. ..+|+++.|+|+|.+||+|+++|.|.+|...        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            689999999999998741           1222333 8899999999999999999999999999765        2   


Q ss_pred             -----ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec
Q 016457           70 -----GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        70 -----~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                           ....+.+.+|.+.|..++|+|++  .++++++.|+++++||+..|+....+..|...+..++|.|.+.++++-+.
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence                 12345678899999999999999  79999999999999999999999999999999999999999999999888


Q ss_pred             CCeEEEEECcCCceeeeee------------------eccc----CCeeEEEEecCCCCeEEEEeC----CC-----cEE
Q 016457          145 GSQIQFWDWRNKKQVACLE------------------ESHV----EDVTQVHFVPNNQNKVVSASV----DG-----LIC  193 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~~~------------------~~~~----~~v~~~~~~~~~~~~l~~~~~----d~-----~i~  193 (389)
                      |...+.+.+...+.+....                  ..|.    .....++|+|+|. ++++...    .+     ..+
T Consensus       186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tY  264 (434)
T KOG1009|consen  186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSY  264 (434)
T ss_pred             CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeE
Confidence            8877777665433222111                  0111    2345688999996 8877642    22     234


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEec-----------------CCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFG-----------------ETNKHLWCLTHIETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  256 (389)
                      +|+-.   ....+...+.....+...+.++|                 |.. ++++....+.+++||.++..++......
T Consensus       265 vfsrk---~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~~svyvydtq~~~P~~~v~ni  340 (434)
T KOG1009|consen  265 VFSRK---DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATKNSVYVYDTQTLEPLAVVDNI  340 (434)
T ss_pred             eeccc---cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeecceEEEeccccccceEEEeee
Confidence            44433   23344444444445555554442                 222 3444445568999999988888776654


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                                 |-..+++++|+++|.  +++..+.||...+..++..++
T Consensus       341 -----------hy~~iTDiaws~dg~--~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  341 -----------HYSAITDIAWSDDGS--VLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             -----------eeeeecceeecCCCc--EEEEeccCCceEEEEEcchhc
Confidence                       778999999999999  889999999999988887765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=7.4e-23  Score=173.89  Aligned_cols=266  Identities=14%  Similarity=0.176  Sum_probs=208.0

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCC--eEEEEecCCeEEEEeCCCce---------e-------
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWS--LMAVSLSTNVVKLYSPVTGQ---------Y-------   72 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~---------~-------   72 (389)
                      -.++++.||+|++|.+.  .++++..-.+.|.|++|+|.++  .||++-.. .+.|.+..-|.         +       
T Consensus       414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~  492 (733)
T KOG0650|consen  414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNE  492 (733)
T ss_pred             eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCc
Confidence            57899999999999985  5777777788999999999764  55555433 35555432120         0       


Q ss_pred             ---------------------eeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeE
Q 016457           73 ---------------------SGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIF  128 (389)
Q Consensus        73 ---------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~  128 (389)
                                           +...-.|...|..+.|+..|  ++|++...+   ..|.|.++.......-|+...+.|.
T Consensus       493 ~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG--DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq  570 (733)
T KOG0650|consen  493 SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG--DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ  570 (733)
T ss_pred             cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC--ceEEEeccCCCcceEEEEecccccccCchhhcCCcee
Confidence                                 01112377889999999999  799997654   4689999987776666766678999


Q ss_pred             EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce
Q 016457          129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (389)
                      ++.|+|...+|++++. ..|++||+...+.+..+. .....|..|+.+|.|. -|+.|+.|+.++.||+.-   ..++..
T Consensus       571 ~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldl---sskPyk  644 (733)
T KOG0650|consen  571 RVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDL---SSKPYK  644 (733)
T ss_pred             EEEecCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCC-eEEEecCCCeeEEEEccc---CcchhH
Confidence            9999999999998887 899999999988888887 5677899999999996 888899999999999983   335677


Q ss_pred             eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC------C---ceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD------G---QNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      .+..|...+++++|+ ..-.++++++.||++.||.-.-      .   -+++.+.++...        ....|.++.|+|
T Consensus       645 ~lr~H~~avr~Va~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~--------~~~gVLd~~wHP  715 (733)
T KOG0650|consen  645 TLRLHEKAVRSVAFH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT--------NDLGVLDTIWHP  715 (733)
T ss_pred             Hhhhhhhhhhhhhhc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee--------cccceEeecccC
Confidence            778899999999999 6778999999999999886321      1   123445553311        224589999999


Q ss_pred             CCCeEEEEEecCCceEEEE
Q 016457          280 EGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       280 ~~~~~~l~~g~~dg~i~i~  298 (389)
                      ...  ||++++.||+|++|
T Consensus       716 ~qp--WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQP--WLFSAGADGTIRLF  732 (733)
T ss_pred             CCc--eEEecCCCceEEee
Confidence            888  99999999999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=2.1e-22  Score=163.48  Aligned_cols=291  Identities=15%  Similarity=0.172  Sum_probs=209.4

Q ss_pred             CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCce---------eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           38 DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQ---------YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        38 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      ..+|..+.|.+... .||+|+.|..|+||-++.++         .+..+..|...|+++.|+|++  ++|+||+.+|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--elLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--ELLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--CeeeecCCCceEE
Confidence            67899999998775 99999999999999876432         344567899999999999999  7999999999999


Q ss_pred             EEEcc--------C--------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCee
Q 016457          108 AWDTR--------S--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus       108 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                      +|...        +        ......+.+|...|..++|+|++..+++++.|..+++||+..+.....+. .|...+.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvq  169 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQ  169 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccc
Confidence            99765        2        12345677889999999999999999999999999999999999999998 8999999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC----------------ccceeee---ccCCceeeEEEecCCCcEEEE
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDD----------------DLLESVI---NVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~---~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      .++|.|.++ ++++-+.|...+.+++.......                ....++.   ....-...++|+ |+|.+|++
T Consensus       170 gvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT-PdG~llvt  247 (434)
T KOG1009|consen  170 GVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT-PDGSLLVT  247 (434)
T ss_pred             eeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC-CCCcEEEc
Confidence            999999996 99999989877777766321000                0000110   011234567788 77777776


Q ss_pred             Eec----CC-----cEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCC----------------CCeEEE
Q 016457          233 LTH----IE-----TLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGE----------------GENLWV  286 (389)
Q Consensus       233 ~~~----d~-----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~l  286 (389)
                      .+.    .+     ..++|+-... ++...+....            .+...+.|+|-                .-++.+
T Consensus       248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~------------k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK------------KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             ccceeeeCCceeeceeEeeccccccCceeecCCCC------------cceEEEEeeeeEEEeccccccccccccccceEE
Confidence            543    11     2334432211 1222222211            22222332220                012233


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.+ ....|+|||.++...      +.....-|-..|+++         +|++||.+|+..|.||...+-.++..
T Consensus       316 aiA-t~~svyvydtq~~~P------~~~v~nihy~~iTDi---------aws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  316 AIA-TKNSVYVYDTQTLEP------LAVVDNIHYSAITDI---------AWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EEe-ecceEEEeccccccc------eEEEeeeeeeeecce---------eecCCCcEEEEeccCCceEEEEEcch
Confidence            444 345699999987554      666666788999999         99999999999999999888777665

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.6e-22  Score=166.53  Aligned_cols=269  Identities=11%  Similarity=0.104  Sum_probs=198.7

Q ss_pred             CCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCeEEEEEeCCC-CeEEE
Q 016457           67 PVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGST-DYLLA  141 (389)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~  141 (389)
                      +.+-.....++.+...|++++|+|....+++++|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.+ ..+++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            333344455667889999999999875468999999999999999532    3356677889999999999965 56788


Q ss_pred             eecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457          142 AGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       142 ~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                      ++.||+|++-|++...  .+..+. .....+..+.|+.+.+ .++.+..=|.+.+||++++..   ....+.-|...|.+
T Consensus       253 sSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s---~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS---EYENLRLHKKKITS  327 (498)
T ss_pred             eccCceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc---cchhhhhhhcccce
Confidence            8889999999998764  344443 2455678889998887 666666666999999997653   23444457779999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEE--eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS--FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      ++++|-...+|++++.|++.+|||++.......  +...          .|...|.+..|||.+.  -|++.+.|..|+|
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~----------~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv  395 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL----------PHRRSVNSAYFSPSGG--TLLTTCQDNEIRV  395 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCCcceecc----------cccceeeeeEEcCCCC--ceEeeccCCceEE
Confidence            999988888999999999999999986433322  2221          2889999999999998  4788889999999


Q ss_pred             EEeccCCccccCCCeEEEecccc--eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          298 FPVNYGGAATIGPPEAVLVGGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ||..--  .....++..+...+.  ..++-       +-++|.|+..++++|-.-..|-|++-...
T Consensus       396 ~dss~~--sa~~~p~~~I~Hn~~t~RwlT~-------fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  396 FDSSCI--SAKDEPLGTIPHNNRTGRWLTP-------FKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eecccc--cccCCccceeeccCcccccccc-------hhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            998511  011223445542221  11222       22379999999999998888999987755

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.91  E-value=4.4e-22  Score=175.99  Aligned_cols=272  Identities=15%  Similarity=0.140  Sum_probs=202.4

Q ss_pred             CeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE--EE----EEEcCCCCeEEEEE
Q 016457           60 NVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE--VW----SVTAGSQEIFCFSF  132 (389)
Q Consensus        60 ~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~  132 (389)
                      +.+.||++... .+...+. -...|.+++|+|... .+++.|..+|.|.+||++.+..  ..    ....|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999865 4444444 567899999999874 7999999999999999987654  22    22346889999999


Q ss_pred             eCCCCe--EEEeecCCeEEEEECcCCce-eeeee----e------cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          133 GGSTDY--LLAAGCGSQIQFWDWRNKKQ-VACLE----E------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       133 ~~~~~~--l~~~~~d~~i~iwd~~~~~~-~~~~~----~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      ..+...  +++++.||.|..|+++.-.. ...+.    .      .....++++.|.+..++.|+.|+.+|.|..-+...
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            765444  99999999999999875432 11110    0      12245899999999999999999999988744432


Q ss_pred             CCCCC----ccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC-CCceeEEeecccccccCCccCCCCCceee
Q 016457          200 DINDD----DLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK-DGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       200 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      .....    +.......|.++|..+.++|-..+.+++++ |.+++||... ...++..+..            +...+++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~------------~~~~v~~  446 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS------------SPDYVTD  446 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh------------ccceeee
Confidence            22222    345566678899999999966555666665 9999999987 5566666665            5578999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      ++|||.... .++++..||.|.+||+.....    .|+.... -+....+.+         .|++.|+.|+.|...|.+.
T Consensus       447 vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~----~Pv~s~~-~~~~~l~~~---------~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  447 VAWSPTRPA-VFATVDGDGNLDIWDLLQDDE----EPVLSQK-VCSPALTRV---------RWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             eEEcCcCce-EEEEEcCCCceehhhhhcccc----CCccccc-cccccccee---------ecCCCCcEEEEecCCCcEE
Confidence            999997654 578899999999999987654    2223332 223344444         7888899999999999999


Q ss_pred             EEeccCC
Q 016457          355 CWLSDDS  361 (389)
Q Consensus       355 iW~~~~~  361 (389)
                      +|++...
T Consensus       512 ~~~l~~~  518 (555)
T KOG1587|consen  512 ILKLSES  518 (555)
T ss_pred             EEEcCch
Confidence            9999866

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.5e-21  Score=176.19  Aligned_cols=301  Identities=13%  Similarity=0.133  Sum_probs=218.5

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC---CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc----
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH---SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR----  112 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~----  112 (389)
                      .-..+.|+|-...++++...-.|++||.+.++.+..|..+   ...|+.+.+-...+..++++|+.||.|+||+--    
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            4567788998889999988889999999999888777543   456999998765544689999999999999743    


Q ss_pred             -CCeEEEEEEc---C----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          113 -SFHEVWSVTA---G----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       113 -~~~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                       ..+.+..+.+   +    .+.=.-+.|....++|+++|.-..|+|||......+..+..+....++++.-+..+.++++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence             2233333221   1    1111346788888999999988999999999888888777455666788776655557999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD  262 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  262 (389)
                      +|..||.|++||.|... ....+.....|...  |..+.+.+..-..|++|+.+|.|++||++.......+....     
T Consensus      1226 AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~----- 1299 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA----- 1299 (1387)
T ss_pred             EeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-----
Confidence            99999999999999543 33456666777766  99999984333469999999999999999752222221110     


Q ss_pred             CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                      .|.  ..+..+++..+++..  .+|+|+. +.|+||++...++..+... ..+.....+.+.++         +|+|...
T Consensus      1300 ~~~--yGs~lTal~VH~hap--iiAsGs~-q~ikIy~~~G~~l~~~k~n-~~F~~q~~gs~scL---------~FHP~~~ 1364 (1387)
T KOG1517|consen 1300 HWE--YGSALTALTVHEHAP--IIASGSA-QLIKIYSLSGEQLNIIKYN-PGFMGQRIGSVSCL---------AFHPHRL 1364 (1387)
T ss_pred             ccc--cCccceeeeeccCCC--eeeecCc-ceEEEEecChhhhcccccC-cccccCcCCCccee---------eecchhH
Confidence            011  113588999999888  8899988 9999999987765222110 11111112344555         9999999


Q ss_pred             eEEEecCCCeEEEEeccCC
Q 016457          343 FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~~~  361 (389)
                      .||.|..|.+|.||..+.+
T Consensus      1365 llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hhhhccCCceEEEeecCCc
Confidence            9999999999999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.3e-19  Score=163.17  Aligned_cols=302  Identities=25%  Similarity=0.365  Sum_probs=232.1

Q ss_pred             CCCCeEEEEecCc---eeeeeec-CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           18 DNVNSIKRFGLKN---SIQTNFG-DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        18 ~~~~~i~~w~~~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      ..++.+.+|+...   ....+.. ...|.+++|+|++..+++++. ++.+++|++..+..+..+.+|...|.+++|+|++
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  210 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG  210 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence            3388999999864   4445555 788999999999998888885 9999999999888888999999999999999888


Q ss_pred             CCC-EEEEEecCCeEEEEEccCCeEEE-EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCC
Q 016457           93 TPH-VLHSCSSDGTIRAWDTRSFHEVW-SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVED  169 (389)
Q Consensus        93 ~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~  169 (389)
                        . .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+++++.|+.+++||++.... +..+. .|...
T Consensus       211 --~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~  286 (466)
T COG2319         211 --GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS-GHSSS  286 (466)
T ss_pred             --ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe-cCCcc
Confidence              4 55555999999999988788877 688886664 338998887888888899999999987665 44443 78899


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCC
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKD  246 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  246 (389)
                      +.++.|+|++. .+++++.|+.+.+||..+..    .....  ..|...+..+.+ .+++..++.+ ..|+.+.+|+...
T Consensus       287 v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         287 VLSVAFSPDGK-LLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             EEEEEECCCCC-EEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCC
Confidence            99999999775 77778889889999888542    22222  356667899999 5553455555 6788999999987


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      .........             ...+..+.+.+ . ......+..++.+.+|+......      ..... .+...+...
T Consensus       361 ~~~~~~~~~-------------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~  418 (466)
T COG2319         361 GKPLKTLEG-------------HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL------LRNLD-GHTSRVTSL  418 (466)
T ss_pred             CceeEEecC-------------CceEEEEEECC-C-CCEEEEecCCCceEEEecccCee------eeecc-CCCCcEEEE
Confidence            762222221             12277888888 5 33334488999999999998765      22222 221455666


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                               .+++++.++++++.++.+++|++..
T Consensus       419 ---------~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         419 ---------DFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ---------EECCCCcEEEEecCCCcEEEEeccC
Confidence                     7889999999999999999999987

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.1e-22  Score=171.85  Aligned_cols=257  Identities=16%  Similarity=0.236  Sum_probs=193.0

Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC--------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      ++..|.+.|..++|.|..  ..|++++.||+|.+|++..        -+++.+|.+|.++|.|+++.+++..++++|.||
T Consensus       289 tl~s~~d~ir~l~~~~se--p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSE--PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCC--CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            566799999999999988  6999999999999999932        367899999999999999999999999999999


Q ss_pred             eEEEEECcCC----------ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457          147 QIQFWDWRNK----------KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS  216 (389)
Q Consensus       147 ~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  216 (389)
                      +|+.|++...          .....+. +|.+.+..+++++... .|++++.||+++.|+......   +..........
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~  441 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGY  441 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc---cccCCccccCC
Confidence            9999966521          1234455 8999999999999885 899999999999999984321   11222222233


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      ..++.+-...-.+.++...-+.-.++++.....+..+........     .....+..+.++|.+.  +.+++..|+.|+
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~-----~~~~~in~vVs~~~~~--~~~~~hed~~Ir  514 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP-----RRYPQINKVVSHPTAD--ITFTAHEDRSIR  514 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc-----cccCccceEEecCCCC--eeEecccCCcee
Confidence            455555422223344444444444555555555554442110000     0124567788889887  789999999999


Q ss_pred             EEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          297 YFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       297 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ++|..+++.      +.... .|...|+++         ++.|+|.+|++++.||.+++|+++..
T Consensus       515 ~~dn~~~~~------l~s~~-a~~~svtsl---------ai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  515 FFDNKTGKI------LHSMV-AHKDSVTSL---------AIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccccccc------chhee-eccceecce---------eecCCCceEEeecCCceeehhhccch
Confidence            999999886      56555 899999999         99999999999999999999999754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-20  Score=143.59  Aligned_cols=236  Identities=18%  Similarity=0.215  Sum_probs=177.5

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCC---------c-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT---------G-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~---------~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ..|++-+++|.+++|++|..+|.|.++.++.         | ..+...++|.++|+.++|. +   .+|++|+ ||.|+-
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d---~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D---DFLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h---hheeecc-CceEEE
Confidence            4567778999999999999999999998753         2 2344558899999999998 3   3777776 599999


Q ss_pred             EEccCCeE------EEEEEc-------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457          109 WDTRSFHE------VWSVTA-------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF  175 (389)
Q Consensus       109 wd~~~~~~------~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  175 (389)
                      |..+....      +...+.       .-..|+++-..|..+.++.++.|+.++-||+++++...+++ +|.+.+.+++-
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~  164 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG  164 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence            98764321      111111       13578999999999999999999999999999999999999 99999999998


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCC-----ccceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDD-----DLLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      -...+ .+++|++||++++||.++.+...     +....... ....|.+++.+   ...|++|+ ...+.+|+++..++
T Consensus       165 R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  165 RNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             cccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceEEecC-CCceeEEeccCCCc
Confidence            55554 89999999999999999764210     11111111 23456666654   34666654 45789999999988


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ...|.-             ...+..+.|..+    .+++++....|.-|.+..
T Consensus       240 t~vfpi-------------pa~v~~v~F~~d----~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  240 TCVFPI-------------PARVHLVDFVDD----CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eEEEec-------------ccceeEeeeecc----eEEEeccccceeeeeecc
Confidence            888873             367788888875    567777778888887763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=183.96  Aligned_cols=281  Identities=15%  Similarity=0.174  Sum_probs=221.9

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      .+.+ ..+|+|+.|...|.++++|++|..++||..+++.++....||.+.|+.++.+.++  .++++++.|..|++|.+.
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n--~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN--TMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh--hhhhhcccCceEEEEecC
Confidence            3445 7789999999999999999999999999999999999999999999999999877  799999999999999999


Q ss_pred             CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee----eecccCCeeEEEEecCCCCeEEEEeC
Q 016457          113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL----EESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      ++.++..+.+|.+.|++++|+|-.    +++.||++++||.+ ..++...    ......-+.++.|...+. .+++++.
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs~  336 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGSR  336 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc-ccccccC
Confidence            999999999999999999999865    67779999999988 2221111    112345577788888885 8999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD  268 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  268 (389)
                      |+.-..|.+....          .+...+.-+..+.....+.+++-.+-.+++|++.+|...+.+.+            |
T Consensus       337 d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g------------h  394 (1113)
T KOG0644|consen  337 DGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG------------H  394 (1113)
T ss_pred             CcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc------------c
Confidence            9998888776210          11111111222212224666777778899999999998888887            7


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                      .+++..+.++|-+.+ ...+++.||...|||+-.+..      +.....+|...+.+          .||+||..++...
T Consensus       395 sd~~yvLd~Hpfn~r-i~msag~dgst~iwdi~eg~p------ik~y~~gh~kl~d~----------kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPR-IAMSAGYDGSTIIWDIWEGIP------IKHYFIGHGKLVDG----------KFSQDGTSIALSD  457 (1113)
T ss_pred             ccceeeeeecCCCcH-hhhhccCCCceEeeecccCCc------ceeeecccceeecc----------ccCCCCceEecCC
Confidence            788999999998775 356788999999999987654      45554466544444          6999999988888


Q ss_pred             CCCeEEEEeccCC
Q 016457          349 EDGRLCCWLSDDS  361 (389)
Q Consensus       349 ~dg~v~iW~~~~~  361 (389)
                      .-|.+.|.....+
T Consensus       458 ~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  458 DHGQLYILGTGQS  470 (1113)
T ss_pred             CCCceEEeccCCC
Confidence            8899999888766

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=5.7e-21  Score=148.74  Aligned_cols=297  Identities=13%  Similarity=0.110  Sum_probs=208.2

Q ss_pred             eeeeeecCcceEEEeecC--C-CCeEEEEec----CCeEEEEeCC--Cceeeeee-cCCCCcEEEEEEeCCCC---CCEE
Q 016457           31 SIQTNFGDDYVFEIVPKN--D-WSLMAVSLS----TNVVKLYSPV--TGQYSGEC-KGHSSTVNQISFSGPST---PHVL   97 (389)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~----d~~i~iw~~~--~~~~~~~~-~~~~~~v~~i~~~~~~~---~~~l   97 (389)
                      .+..+...-.++++.|+.  + ..+||.|+.    .+.|.|..+.  +++.+..- ..|.-+++.+-|.|+..   +++|
T Consensus        37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            344444466788999983  2 347888875    4567666543  34443322 24888999999999873   3467


Q ss_pred             EEEecCCeEEEEEccCC--eE--EEEEE-----cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCce---eeeeee
Q 016457           98 HSCSSDGTIRAWDTRSF--HE--VWSVT-----AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQ---VACLEE  164 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~--~~--~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~---~~~~~~  164 (389)
                      ||.+  ..+|+|.+...  +.  ...+.     .+..++++..|+.-+..++.+++ |-+..|||++++..   ..++- 
T Consensus       117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-  193 (364)
T KOG0290|consen  117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-  193 (364)
T ss_pred             hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-
Confidence            7654  36999998732  11  11121     23689999999987766665555 99999999998733   45555 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEE
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWD  243 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d  243 (389)
                      +|.+.|..++|...+...|++.+.||.+++||+|... ....+.+-.....+...++|++.+.+++++-..|+ .|.|.|
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            8999999999999887899999999999999999532 22233333333568889999988888998887765 899999


Q ss_pred             cCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee
Q 016457          244 WKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV  322 (389)
Q Consensus       244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  322 (389)
                      ++.. .++..+.+            |...|..++|.|.... .|++++.|..+.+||+...-......|+....  -+++
T Consensus       273 iR~P~tpva~L~~------------H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E  337 (364)
T KOG0290|consen  273 IRVPCTPVARLRN------------HQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE  337 (364)
T ss_pred             ecCCCcceehhhc------------CcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence            9865 56667776            7799999999998655 78999999999999998654322222222222  3467


Q ss_pred             eeeccCCCcccCCCCCC-CceeEEEecCCCeEEEE
Q 016457          323 VRSVLPMPSVQGRPAQS-HGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       323 v~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~v~iW  356 (389)
                      |+.+         .|++ ...+++.+. ++++.+-
T Consensus       338 VNqi---------~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  338 VNQI---------QWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             eeee---------eecccCCCEEEEEe-cCeeeEE
Confidence            8888         7774 345556554 4555443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.3e-22  Score=169.82  Aligned_cols=248  Identities=14%  Similarity=0.166  Sum_probs=187.3

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      .+.|++++|.|....|++++.||+|.+|+++.        -+++.+|++|.++|.|++..+++  +.+++|+.||+|+.|
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~--~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG--EHCYSGGIDGTIRCW  371 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc--eEEEeeccCceeeee
Confidence            78899999999999999999999999999932        25778899999999999999999  799999999999999


Q ss_pred             EccCC----------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-cccCCeeEEEEecC
Q 016457          110 DTRSF----------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPN  178 (389)
Q Consensus       110 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~  178 (389)
                      ++...          .....+.+|.+.|+.+++++...+|++++.||++++|+.....+ .++.. ...+...++.+-..
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence            65411          23467889999999999999999999999999999999876665 22221 12233456666554


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCCCCCccceee-----eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          179 NQNKVVSASVDGLICTFDTGGDINDDDLLESV-----INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      .....++...-+.-.++++.....  ..+...     ......+..+.++ ++..+.+++..|+.|+++|..+++.++..
T Consensus       451 ~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  451 RPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             hhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEec-CCCCeeEecccCCceecccccccccchhe
Confidence            421233332233333333332210  001000     1112346677777 66789999999999999999999999888


Q ss_pred             ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ..            |...++++++.|+|.  +|++|+.||.+++|.+.....
T Consensus       528 ~a------------~~~svtslai~~ng~--~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  528 VA------------HKDSVTSLAIDPNGP--YLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             ee------------ccceecceeecCCCc--eEEeecCCceeehhhccchhe
Confidence            77            669999999999999  999999999999999876543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=2.4e-19  Score=161.50  Aligned_cols=288  Identities=22%  Similarity=0.387  Sum_probs=222.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-eeeeecCCC-CcEEEEEE-eCCCCCCEEEEEec-CCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-YSGECKGHS-STVNQISF-SGPSTPHVLHSCSS-DGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~-~~v~~i~~-~~~~~~~~l~s~~~-dg~i~iwd~~~  113 (389)
                      ...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. ..++..+. |+.+.+|+...
T Consensus        65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~  143 (466)
T COG2319          65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN-SILLASSSLDGTVKLWDLST  143 (466)
T ss_pred             cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc-eEEeccCCCCccEEEEEecC
Confidence            7889999999999999999999999999998776 666666644 37777877 66662 24555444 99999999998


Q ss_pred             -CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          114 -FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       114 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                       ......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+. .|...+.+++|+|+++..+++++.|+.
T Consensus       144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCc
Confidence             7888899999999999999999988888875 9999999999988888888 799999999999988524444589999


Q ss_pred             EEEEecCCCCCCCccce-eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce-eEEeecccccccCCccCCCC
Q 016457          192 ICTFDTGGDINDDDLLE-SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN-VASFENARSLASDSWTLDDV  269 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~  269 (389)
                      |++||...+    .... .+..|.... -..|+ +++.++++++.|+.+++|++..... +..+..            |.
T Consensus       223 i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------------~~  284 (466)
T COG2319         223 IRLWDLSTG----KLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG------------HS  284 (466)
T ss_pred             EEEEECCCC----cEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEec------------CC
Confidence            999987732    2333 355555554 33677 5667888999999999999987665 444422            66


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-cccceeeeeccCCCcccCCCCCCCceeEEEe-
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-  347 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-  347 (389)
                      ..+.++.|.|++.  .+++++.|+.+.+|+..+...      ..... ..|...+..+         .|.+++..++.+ 
T Consensus       285 ~~v~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  347 (466)
T COG2319         285 SSVLSVAFSPDGK--LLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSL---------SFSPDGSLLVSGG  347 (466)
T ss_pred             ccEEEEEECCCCC--EEEEeeCCCcEEEEEcCCCce------EEEeeecccCCceEEE---------EECCCCCEEEEee
Confidence            8899999999777  566688889999998887664      12221 2677677777         663332444555 


Q ss_pred             cCCCeEEEEeccCCc
Q 016457          348 GEDGRLCCWLSDDSS  362 (389)
Q Consensus       348 ~~dg~v~iW~~~~~~  362 (389)
                      ..|+.+++|++....
T Consensus       348 ~~d~~~~~~~~~~~~  362 (466)
T COG2319         348 SDDGTIRLWDLRTGK  362 (466)
T ss_pred             cCCCcEEeeecCCCc
Confidence            688999999998764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=150.69  Aligned_cols=294  Identities=12%  Similarity=0.045  Sum_probs=202.5

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      +...+++ .+.|+++.|..++ +|.+|...|.|++|++.+......++ .|...|+.+.-.|++   .+.+-+.|..+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND---SLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc---chhhcCCCceEEE
Confidence            3445556 7889999998877 58899999999999999988888888 578899999998876   7999999999999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeC-----CCC---eEEEeecCC--eEEEEECcCCceeeeee---ecccCCeeEEEE
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGG-----STD---YLLAAGCGS--QIQFWDWRNKKQVACLE---ESHVEDVTQVHF  175 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~  175 (389)
                      |++.-+..+..   |.-.++++.|.+     ..+   .++..-..+  .+++-|......+....   .+..+.+.|..+
T Consensus        82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            99986544322   223344444432     111   112111111  12223322222222111   123456777764


Q ss_pred             ecC-C-CCeEEEEeCCCcEEEEecCCCCC------CCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          176 VPN-N-QNKVVSASVDGLICTFDTGGDIN------DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       176 ~~~-~-~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      ... + ..++++|.++|.+.+||+.++..      ..+.......|..+|.++.+. +....=++++.+..+..|++...
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccc
Confidence            332 2 12677888999999999997521      112334455688899999997 44445567777788889988643


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL  327 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  327 (389)
                      .....+.....+        ..-.+..+.+-||++  .+++++.|+.|+||+.++.+.      +..+. -|+..|+++ 
T Consensus       238 ~gslq~~~e~~l--------knpGv~gvrIRpD~K--IlATAGWD~RiRVyswrtl~p------LAVLk-yHsagvn~v-  299 (323)
T KOG0322|consen  238 TGSLQIRKEITL--------KNPGVSGVRIRPDGK--ILATAGWDHRIRVYSWRTLNP------LAVLK-YHSAGVNAV-  299 (323)
T ss_pred             cCcccccceEEe--------cCCCccceEEccCCc--EEeecccCCcEEEEEeccCCc------hhhhh-hhhcceeEE-
Confidence            111111110000        124577888999999  999999999999999999765      77776 899999999 


Q ss_pred             CCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          328 PMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       328 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                              +|+|+...+|++|.|+.|.+|++
T Consensus       300 --------Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 --------AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             --------EeCCCCchhhhccCCceEEeeec
Confidence                    99999999999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=2.1e-20  Score=165.47  Aligned_cols=264  Identities=16%  Similarity=0.106  Sum_probs=195.8

Q ss_pred             CCeEEEEecCce---eeeeecCcceEEEeecCC-CCeEEEEecCCeEEEEeCCCcee--eee----ecCCCCcEEEEEEe
Q 016457           20 VNSIKRFGLKNS---IQTNFGDDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQY--SGE----CKGHSSTVNQISFS   89 (389)
Q Consensus        20 ~~~i~~w~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~--~~~----~~~~~~~v~~i~~~   89 (389)
                      ++.+.+|+++.+   -..+.....|+|+.|+|. ..++|.|+.+|+|.+||+..+..  ...    ...|..+++.+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            348999999754   344444899999999995 47888888899999999987654  222    23589999999998


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeE------EEEEE------cCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECc--
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHE------VWSVT------AGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWR--  154 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~--  154 (389)
                      .+..+.-+++++.||.|..|+++.-..      .....      .....+++++|.+.... +++|+.+|.|.--+..  
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            876445599999999999998874321      11111      11457899999886655 5666668988773322  


Q ss_pred             -CCc-----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          155 -NKK-----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       155 -~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                       ...     ....+. .|.++|+++.++|-+...|++++ |-+++||....   ...++..+..+...+.+++|+|-...
T Consensus       381 ~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl~~~~~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPLLSLDSSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             ccccccccccccccc-ccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcchhhhhccceeeeeEEcCcCce
Confidence             221     122344 68899999999999975666666 99999998873   23456666667777999999987788


Q ss_pred             EEEEEecCCcEEEEEcCCC--ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          229 HLWCLTHIETLSIWDWKDG--QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .++++..||.|.+||+...  .++.+...            +......+.|+++|+  +|++|...|.+++|++..
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~------------~~~~l~~~~~s~~g~--~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQKV------------CSPALTRVRWSPNGK--LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccccc------------cccccceeecCCCCc--EEEEecCCCcEEEEEcCc
Confidence            9999999999999998754  23333322            235667788888898  899999999999999964

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=2.4e-20  Score=147.46  Aligned_cols=257  Identities=19%  Similarity=0.229  Sum_probs=190.5

Q ss_pred             ccccCCCCeEEEEecCc--------------eeeeeec--CcceEEEeec-------CCCCeEEEEecCCeEEEEeCCCc
Q 016457           14 SQSCDNVNSIKRFGLKN--------------SIQTNFG--DDYVFEIVPK-------NDWSLMAVSLSTNVVKLYSPVTG   70 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--------------~~~~~~~--~~~v~~~~~~-------~~~~~l~~~~~d~~i~iw~~~~~   70 (389)
                      .-+.+.|+.+.+|++..              ....++-  .+.|...+|-       |+..++|+.+.+.-|++||.-+|
T Consensus        64 iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG  143 (406)
T KOG2919|consen   64 ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTG  143 (406)
T ss_pred             EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccc
Confidence            33566788899998731              1111221  6667777764       67789999999999999999999


Q ss_pred             eeeeeecC--CCC---cEEEEEEeCCCCCCEEEEEecCCeEEEEEc-cCCeEEE--E-E----EcCCCCeEEEEEeCCCC
Q 016457           71 QYSGECKG--HSS---TVNQISFSGPSTPHVLHSCSSDGTIRAWDT-RSFHEVW--S-V----TAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        71 ~~~~~~~~--~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~--~-~----~~~~~~v~~~~~~~~~~  137 (389)
                      +...++.+  |.+   ...+++|+|+|  .+|++| ....|++||+ +.|+...  . +    .+..+.|.|++|+|...
T Consensus       144 ~lraSy~~ydh~de~taAhsL~Fs~DG--eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~  220 (406)
T KOG2919|consen  144 KLRASYRAYDHQDEYTAAHSLQFSPDG--EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS  220 (406)
T ss_pred             ccccchhhhhhHHhhhhheeEEecCCC--CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence            98888765  433   35689999999  577776 4668999999 4443221  1 1    12267889999999887


Q ss_pred             e-EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCccceeeeccCC
Q 016457          138 Y-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDDLLESVINVGT  215 (389)
Q Consensus       138 ~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  215 (389)
                      . +++++....+-||.-..+.+++.+- +|.+.|+.+.|.++|. .|++|+. |-.|..||+|..   ..++..+..|-.
T Consensus       221 ~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~---~~pv~~L~rhv~  295 (406)
T KOG2919|consen  221 KTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYS---RDPVYALERHVG  295 (406)
T ss_pred             cceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhc---cchhhhhhhhcc
Confidence            5 5555557788888877888998888 9999999999999995 8888875 678999999943   344555555544


Q ss_pred             -ceeeEEEe-cCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457          216 -SVGKVGFF-GETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA  292 (389)
Q Consensus       216 -~i~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d  292 (389)
                       .-..|.|. .+.+++|++|+.||.|++||+.+ +..+..+..            +...+..++++|--.  ++++++..
T Consensus       296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~------------~sd~vNgvslnP~mp--ilatssGq  361 (406)
T KOG2919|consen  296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN------------YSDTVNGVSLNPIMP--ILATSSGQ  361 (406)
T ss_pred             CccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc------------ccccccceecCcccc--eeeeccCc
Confidence             33345553 26788999999999999999988 565666655            668999999999866  66776543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-20  Score=157.99  Aligned_cols=215  Identities=13%  Similarity=0.122  Sum_probs=162.5

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ...+.| .+.|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+ .+|...|.++.|.|..+..++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            345667 899999999999999999999999999999887887776 579999999999998766799999999999999


Q ss_pred             EccCC----------eEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCcee----------eeeeecccC
Q 016457          110 DTRSF----------HEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQV----------ACLEESHVE  168 (389)
Q Consensus       110 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~  168 (389)
                      |+...          .....+..|...|..++-.|.+ ..+.+++.||+|+-+|++.....          ..+. ..--
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~-~~li  201 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN-PQLI  201 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc-hhhh
Confidence            99842          3455567788889999999888 56778888999999999964211          1111 1223


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC--------------ccceeee-cc-----------CCceeeEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD--------------DLLESVI-NV-----------GTSVGKVGF  222 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~-~~-----------~~~i~~~~~  222 (389)
                      ...|+.++|..+++|++|+.|-..++||.+...+..              .++..+. +|           ...++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            567899999999999999999999999965221110              0111111 11           012566788


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      + |+|.-|++.-....|+++|+..++
T Consensus       282 n-pNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  282 N-PNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             C-CCCcEEEEeeCCeEEEEEeecCCC
Confidence            8 666666666666689999987554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.88  E-value=6.3e-20  Score=144.90  Aligned_cols=207  Identities=17%  Similarity=0.181  Sum_probs=169.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-C
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-S  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~  113 (389)
                      ..+|+|.+|++|+..+|++..+..|.||.....   +..+++..|...|+.|+|+|..  +.|++++.|..-++|... .
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s--nrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC--CceeEccCCCCccccccCCC
Confidence            688999999999999999999999999997655   4677888999999999999998  799999999999999984 3


Q ss_pred             C--eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          114 F--HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       114 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      +  ++...+..++..++++.|+|.++.+++++....|.+|-++....-   +.+...+.+.|+++.|+|++- ++++|+.
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGST  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eeccccc
Confidence            3  445566667899999999999999999999999999988754432   223346788999999999984 9999999


Q ss_pred             CCcEEEEecCCCC--------------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          189 DGLICTFDTGGDI--------------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       189 d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      |+.+++|..--..              +....+.+.....+.+..+.|+ +.|..|+-.+.|+.+.+-|.....
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCCc
Confidence            9999999764111              0111222333556789999999 788999999999999999987654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.3e-20  Score=152.65  Aligned_cols=211  Identities=13%  Similarity=0.141  Sum_probs=166.0

Q ss_pred             eeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc-------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457           32 IQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSS  102 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  102 (389)
                      .....| ..+|..++|+|-+ ..||+|+.|.+|.||++..+       +++..+.+|...|.-++|+|... +.|+|++.
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~  152 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS  152 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence            334455 8899999999954 68999999999999998654       45677889999999999999876 79999999


Q ss_pred             CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC-CeeEEEEecCCCC
Q 016457          103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE-DVTQVHFVPNNQN  181 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  181 (389)
                      |.+|.+||+.+++.+.++. |...|.++.|+.+|..+++++.|..|+|||.++++.+..-. +|.+ .-..+.|..++. 
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-  229 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-
Confidence            9999999999999998888 99999999999999999999999999999999999998875 6665 355677888885 


Q ss_pred             eEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE-EEEEecCCcEEEEEcCCCce
Q 016457          182 KVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH-LWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       182 ~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~  249 (389)
                      ++.+|.   .++.+-+||...-. .. .........+.|.---|. ++..+ .++|-.|+.|+.|.+.+..+
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~-eP-~~~~elDtSnGvl~PFyD-~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLE-EP-IALQELDTSNGVLLPFYD-PDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeeeccccccccceeccCccccc-Cc-ceeEEeccCCceEEeeec-CCCCEEEEEecCCcceEEEEecCCCc
Confidence            555554   36789999988432 11 222223344455444455 44444 45666799999999987654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=160.47  Aligned_cols=299  Identities=15%  Similarity=0.177  Sum_probs=223.7

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      .+.. .+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|-|......+++++.||.+++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            3444 889999999999999999999999999999988877776 46999999999998765578999999999998776


Q ss_pred             cC-CeE--EEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeee--ecccC---CeeEEEEecCCCCe
Q 016457          112 RS-FHE--VWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLE--ESHVE---DVTQVHFVPNNQNK  182 (389)
Q Consensus       112 ~~-~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~---~v~~~~~~~~~~~~  182 (389)
                      .. +.+  ...+..|.++|.-++.-|...+ ++++|.|+.+.-+|++...+...+.  ..+..   ....++.+|...+.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            53 332  3445668899999999887655 7777889999999999876543332  12333   57889999998889


Q ss_pred             EEEEeCCCcEEEEecCCCCCC--Cccceeee------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc------
Q 016457          183 VVSASVDGLICTFDTGGDIND--DDLLESVI------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ------  248 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------  248 (389)
                      +++++.|..+++||.+.-...  ...+..+.      ...-.|++++|+ .++.-|+++..|-.|++|.-..+.      
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEeccccccCCCCCC
Confidence            999999999999999853211  01111211      233568999998 566667777888899999643221      


Q ss_pred             ------eeEE-eecccccccCCccCCCCCceeeecc-cCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc
Q 016457          249 ------NVAS-FENARSLASDSWTLDDVDYFVDCHY-PGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       249 ------~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                            .++. |++|+          ....|-.+-| -|...  |+++|+.-|.|.||+-.+++.      +..+. +..
T Consensus       376 ~s~~~~~~k~vYKGHr----------N~~TVKgVNFfGPrsE--yVvSGSDCGhIFiW~K~t~ei------i~~Me-gDr  436 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHR----------NSRTVKGVNFFGPRSE--YVVSGSDCGHIFIWDKKTGEI------IRFME-GDR  436 (559)
T ss_pred             Ccchhhccchhhcccc----------cccccceeeeccCccc--eEEecCccceEEEEecchhHH------HHHhh-ccc
Confidence                  1222 66655          3455777765 45556  999999999999999999887      55555 555


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..|+|+-|         +|--..|||+|-|..|+||.....
T Consensus       437 ~VVNCLEp---------HP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  437 HVVNCLEP---------HPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ceEeccCC---------CCCCchhhccCCccceeeecCCcc
Confidence            68999943         333335699999999999998544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=9.3e-19  Score=151.49  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=177.1

Q ss_pred             EEecCCeEEEEeCCC-ce--eeeeecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEcc-CCeE--EEEEEcCCCCe
Q 016457           55 VSLSTNVVKLYSPVT-GQ--YSGECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTR-SFHE--VWSVTAGSQEI  127 (389)
Q Consensus        55 ~~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~--~~~~~~~~~~v  127 (389)
                      +...++.|.+|++.+ ++  .+..+. +.+....++++|++  ++|+++ ..++.|.+|++. +++.  +..... ....
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p   82 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK--RHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSP   82 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC--CEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCc
Confidence            335689999999964 43  445554 34567789999998  677655 457889999997 3332  222222 3456


Q ss_pred             EEEEEeCCCCeEEEeec-CCeEEEEECcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457          128 FCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN  202 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (389)
                      ..++++|+++.+++++. ++.|.+||+.+..    .+..+.  +.....+++++|+++.++++...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            78999999999998876 8999999997432    222222  3345678899999973445556679999999985221


Q ss_pred             CCc-c-ceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCC--Cc--eeEEeecccccccCCccCCCCCceeee
Q 016457          203 DDD-L-LESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKD--GQ--NVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       203 ~~~-~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      ... . .............++|+ +++++++++.. +++|.+|++..  ++  .+..+......      ..+......+
T Consensus       161 l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~i  233 (330)
T PRK11028        161 LVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FSDTRWAADI  233 (330)
T ss_pred             ccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CCCCccceeE
Confidence            110 0 00111224456789999 77888877766 89999999973  22  23333221100      0012234468


Q ss_pred             cccCCCCeEEEEEe-cCCceEEEEEeccCCccccCCCeEEEecccce---eeeeccCCCcccCCCCCCCceeEEEecC-C
Q 016457          276 HYPGEGENLWVIGG-TGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA---VVRSVLPMPSVQGRPAQSHGIFGWTGGE-D  350 (389)
Q Consensus       276 ~~~~~~~~~~l~~g-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~s~~~~~l~s~~~-d  350 (389)
                      .++|+++  +++++ ..++.|.+|++.....      ...+. ++..   ..+.+         .++|||++|+++.. +
T Consensus       234 ~~~pdg~--~lyv~~~~~~~I~v~~i~~~~~------~~~~~-~~~~~~~~p~~~---------~~~~dg~~l~va~~~~  295 (330)
T PRK11028        234 HITPDGR--HLYACDRTASLISVFSVSEDGS------VLSFE-GHQPTETQPRGF---------NIDHSGKYLIAAGQKS  295 (330)
T ss_pred             EECCCCC--EEEEecCCCCeEEEEEEeCCCC------eEEEe-EEEeccccCCce---------EECCCCCEEEEEEccC
Confidence            8999998  55555 4578999999975432      11221 2211   12233         89999999998764 8


Q ss_pred             CeEEEEeccC
Q 016457          351 GRLCCWLSDD  360 (389)
Q Consensus       351 g~v~iW~~~~  360 (389)
                      ++|.+|+++.
T Consensus       296 ~~v~v~~~~~  305 (330)
T PRK11028        296 HHISVYEIDG  305 (330)
T ss_pred             CcEEEEEEcC
Confidence            9999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=149.66  Aligned_cols=270  Identities=11%  Similarity=0.153  Sum_probs=189.3

Q ss_pred             ccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCceeee--eecCCC-CcEEE
Q 016457           14 SQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTGQYSG--ECKGHS-STVNQ   85 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~-~~v~~   85 (389)
                      .|..-+.|+|++||..+  .+..+.+ ...++.+.|..  ....+.+|+.||+|++||++......  .+.++. .+..+
T Consensus        43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~  122 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC  122 (376)
T ss_pred             EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence            45556779999999864  7778888 88888999876  45789999999999999998764443  344454 56777


Q ss_pred             EEEeCCCCCCEEEEEe----cCCeEEEEEccCCeE-EEEE-EcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-
Q 016457           86 ISFSGPSTPHVLHSCS----SDGTIRAWDTRSFHE-VWSV-TAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK-  157 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-  157 (389)
                      ++.+.++  +.+++|.    .+-.|.+||++..+. +..+ ..|...|+++.|+|.++.++++|+ ||.|.+||++... 
T Consensus       123 ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  123 LDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7776566  5788775    366799999998766 5444 568999999999998877666555 9999999997542 


Q ss_pred             ---eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee-e--------eccCCceeeEEEecC
Q 016457          158 ---QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES-V--------INVGTSVGKVGFFGE  225 (389)
Q Consensus       158 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--------~~~~~~i~~~~~~~~  225 (389)
                         ++..+.  |...|.++.|..++-..|.+-+..+...+|++..+......... .        .....-|..  .+|.
T Consensus       201 eDaL~~viN--~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~  276 (376)
T KOG1188|consen  201 EDALLHVIN--HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPG  276 (376)
T ss_pred             hhhHHHhhc--ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCC
Confidence               344554  78889999999887447888899999999999855321111000 0        000111111  2234


Q ss_pred             CCcEEEEEec-CCcEEEEEcCC---C---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          226 TNKHLWCLTH-IETLSIWDWKD---G---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       226 ~~~~l~~~~~-d~~i~i~d~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      +...++.++. -+...++-+..   +   +.+..+.++           |..-|.++.|...+.  ++.+|++||.+.+|
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-----------~~eiVR~i~~~~~~~--~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-----------HEEIVRDILFDVKND--VLYTGGEDGLLQAW  343 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccccCC-----------cHHHHHHHhhhcccc--eeeccCCCceEEEE
Confidence            5555555555 56666655442   2   233334432           667888999988777  89999999999999


Q ss_pred             Eecc
Q 016457          299 PVNY  302 (389)
Q Consensus       299 ~~~~  302 (389)
                      ..+.
T Consensus       344 k~~d  347 (376)
T KOG1188|consen  344 KVED  347 (376)
T ss_pred             ecCC
Confidence            8643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=1.5e-18  Score=139.72  Aligned_cols=303  Identities=13%  Similarity=0.118  Sum_probs=213.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~  115 (389)
                      ...+..+.|+.+...|.+|+.|| -++|+.+..............|-.+-|+.    .++|..+.+.  .+++.+.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccCc
Confidence            45577778999999999999888 67887765433222222334566666763    3666665544  49999999888


Q ss_pred             EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee--cccCCeeEEEEecCCCCeEEEEe--CCCc
Q 016457          116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE--SHVEDVTQVHFVPNNQNKVVSAS--VDGL  191 (389)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~--~d~~  191 (389)
                      .+..+.. ..+|.++.++  .++|+++=. ..|+|||+++.+.+.++..  .+...+.++.+++.+. +++--+  ..|.
T Consensus        80 ~ICe~~f-pt~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   80 TICEIFF-PTSILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGD  154 (391)
T ss_pred             eEEEEec-CCceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCce
Confidence            8888776 4889999995  556666655 4599999999999988873  3555677777777663 666533  3688


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      |.+||..+    .+....+..|++++.+++|+ ++|.+|++++..| .|++|.+.+|+.+.+|..+-          ...
T Consensus       155 V~l~d~~n----l~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------~~~  219 (391)
T KOG2110|consen  155 VVLFDTIN----LQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------YPV  219 (391)
T ss_pred             EEEEEccc----ceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------eee
Confidence            99999984    35677788999999999999 8999999999999 57999999999999998644          336


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeE--EEe----cccc----eeeeecc-----------CC
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA--VLV----GGHT----AVVRSVL-----------PM  329 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~--~~~----~~h~----~~v~~~~-----------~~  329 (389)
                      .|.+++|+|+++  +|++.+..++|+||.++.........+..  ...    ..-.    ..|..++           +.
T Consensus       220 ~IySL~Fs~ds~--~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~  297 (391)
T KOG2110|consen  220 SIYSLSFSPDSQ--FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE  297 (391)
T ss_pred             EEEEEEECCCCC--eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence            789999999999  99999999999999987654311110000  000    0000    0111110           11


Q ss_pred             Ccc-cCCCCC--CCceeEEEecCCCeEEEEeccCCcccchh
Q 016457          330 PSV-QGRPAQ--SHGIFGWTGGEDGRLCCWLSDDSSEINRS  367 (389)
Q Consensus       330 ~~~-~~~~~s--~~~~~l~s~~~dg~v~iW~~~~~~~~~~~  367 (389)
                      .+. -.+.+.  +...++..++.||.+..|+++....+.|.
T Consensus       298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~  338 (391)
T KOG2110|consen  298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECA  338 (391)
T ss_pred             CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeE
Confidence            110 112344  46778888999999999999976444443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=2.5e-20  Score=151.01  Aligned_cols=211  Identities=14%  Similarity=0.231  Sum_probs=163.4

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCC-eEEEeecC
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCG  145 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  145 (389)
                      -.+.||+++|..++|+|.+. +.||||+.|.+|.||++..+       +++..+.+|...|--++|+|.-. .|+++|.|
T Consensus        75 P~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            34578999999999999876 79999999999999998643       56778899999999999999755 46677789


Q ss_pred             CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC-ceeeEEEec
Q 016457          146 SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT-SVGKVGFFG  224 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~  224 (389)
                      ..|.+||+.+++.+.++.  |...|.++.|+.+|. +|++.+.|..|+|||.+++    +.+..-..|.+ .-..+.|. 
T Consensus       154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~----~~v~e~~~heG~k~~Raifl-  225 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG----TVVSEGVAHEGAKPARAIFL-  225 (472)
T ss_pred             ceEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC----cEeeecccccCCCcceeEEe-
Confidence            999999999999999986  999999999999995 9999999999999999965    34444445553 33455566 


Q ss_pred             CCCcEEEEEe---cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          225 ETNKHLWCLT---HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       225 ~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      .++.++.+|-   .+..+-+||..+.+....+....          .+..|.---|.++.+- +-++|-.|+.|+.|.+.
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD----------tSnGvl~PFyD~dt~i-vYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD----------TSNGVLLPFYDPDTSI-VYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             ccCceeeeccccccccceeccCcccccCcceeEEec----------cCCceEEeeecCCCCE-EEEEecCCcceEEEEec
Confidence            5666444443   35689999987654433333221          3355666667777664 34678899999999987


Q ss_pred             cCC
Q 016457          302 YGG  304 (389)
Q Consensus       302 ~~~  304 (389)
                      ...
T Consensus       295 ~d~  297 (472)
T KOG0303|consen  295 NEP  297 (472)
T ss_pred             CCC
Confidence            654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=3e-20  Score=160.40  Aligned_cols=258  Identities=14%  Similarity=0.237  Sum_probs=200.7

Q ss_pred             ccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           16 SCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        16 s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      -...+..+.+||..  ..++++++ ++.|+|++|+.||+.+|+|+.|..|.+|+.+- +-+..+ .|.+.|.|+.|+|-.
T Consensus        28 ~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~  105 (1081)
T KOG1538|consen   28 ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPIT  105 (1081)
T ss_pred             EEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchH
Confidence            34456778999985  68889999 99999999999999999999999999998542 222233 499999999999988


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCe
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDV  170 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v  170 (389)
                        +.|+|++-. ..-+|....... ...+. ...+.+++|..+|.+++.|-.+|+|.+-+ .++++...+.  .+..++|
T Consensus       106 --h~LasCsLs-dFglWS~~qK~V-~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspi  179 (1081)
T KOG1538|consen  106 --HQLASCSLS-DFGLWSPEQKSV-SKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPI  179 (1081)
T ss_pred             --HHhhhcchh-hccccChhhhhH-Hhhhh-heeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCc
Confidence              789988765 377898764332 22222 46789999998888888888899999986 3455544444  2467899


Q ss_pred             eEEEEecCCC----CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          171 TQVHFVPNNQ----NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       171 ~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .+++|+|...    ..+++.....++.+|.+...     .+......+....++.+. ++|.+++.|+.|+.+++|- +.
T Consensus       180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf-~NGEy~LiGGsdk~L~~fT-R~  252 (1081)
T KOG1538|consen  180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYF-TNGEYILLGGSDKQLSLFT-RD  252 (1081)
T ss_pred             eEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCCchhheec-cCCcEEEEccCCCceEEEe-ec
Confidence            9999999742    36778888888888888742     233333445566788888 8899999999999999996 45


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |-.+.++..            ...+|+.++..|+++  +++.|..||+|..|++..
T Consensus       253 GvrLGTvg~------------~D~WIWtV~~~PNsQ--~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  253 GVRLGTVGE------------QDSWIWTVQAKPNSQ--YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CeEEeeccc------------cceeEEEEEEccCCc--eEEEEEccCeeehhhhHH
Confidence            666666665            448999999999999  889999999999998753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=5.2e-20  Score=143.35  Aligned_cols=221  Identities=17%  Similarity=0.142  Sum_probs=171.8

Q ss_pred             eEEEEecCceeee-----------eec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee-eeee-----cCCCCc
Q 016457           22 SIKRFGLKNSIQT-----------NFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY-SGEC-----KGHSST   82 (389)
Q Consensus        22 ~i~~w~~~~~~~~-----------~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~-----~~~~~~   82 (389)
                      .+-+|++.+....           +..  -+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+     .+|...
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence            3578887643332           221  45899999999999998876 88999999987754 3333     235667


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEe-ecCCeEEEEECcC-Ccee
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAA-GCGSQIQFWDWRN-KKQV  159 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~-~~~~  159 (389)
                      .++-+|+|...++.+++. .|+++..||+++.++...++ .|...|..+.|+|+...++++ |.||.|++||.|. ..++
T Consensus       173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv  251 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV  251 (370)
T ss_pred             ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence            889999995444667665 58899999999988777665 467889999999998876654 5589999999995 4578


Q ss_pred             eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC-------------------------CCCccceeeeccC
Q 016457          160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI-------------------------NDDDLLESVINVG  214 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------------------~~~~~~~~~~~~~  214 (389)
                      +++. +|...|.++.|+|....++++|+.|..|.+|...+-.                         .....+..+..|+
T Consensus       252 ~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE  330 (370)
T KOG1007|consen  252 QELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE  330 (370)
T ss_pred             cccC-CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence            8888 8999999999999887799999999999999765321                         0112344667789


Q ss_pred             CceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      ..|.+++|+..+.-.+++-+.||.+.|=.+.
T Consensus       331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  331 DSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            9999999997788889999999999876553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.86  E-value=4.6e-19  Score=162.70  Aligned_cols=269  Identities=14%  Similarity=0.138  Sum_probs=180.7

Q ss_pred             EecCc-eeeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc-------eeeeeecCCCCcEEEEEEeCCCCCC
Q 016457           26 FGLKN-SIQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        26 w~~~~-~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      |+.+. .+..+.. ...|..++.++.. .++++|+.||+|++|+...-       +...++......+.++...+.+  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence            77653 4555554 7777788877655 99999999999999997532       2223344356789999999888  7


Q ss_pred             EEEEEecCCeEEEEEccCC--e-----EEEEEEcC-CCCeEEE-EEeCC-CC-eEEEeecCCeEEEEECcCCceeeeeee
Q 016457           96 VLHSCSSDGTIRAWDTRSF--H-----EVWSVTAG-SQEIFCF-SFGGS-TD-YLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      .+|.++.||.|++.+++..  +     +.+..+.+ .+.+.++ +|... .. .++.+...+.|..||+++.....+++.
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            9999999999999998752  1     12222222 2333333 34322 23 456666689999999998877665541


Q ss_pred             -cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCC--cEEEEEe--cCCc
Q 016457          165 -SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETN--KHLWCLT--HIET  238 (389)
Q Consensus       165 -~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~l~~~~--~d~~  238 (389)
                       ...+.|++++.+|.+. ++++|+..|.+.+||+|-+    .++... ..+..++..+..+|-.+  ...++++  ..+.
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecC----ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence             3346799999999994 9999999999999999943    222222 23456778777764333  4444444  5779


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccC-------CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTL-------DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      |.+|++.+|.+...+......+..+|..       ++.-....+.+...+.  ++.+|+.|..|+.||....
T Consensus      1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~--~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG--FLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc--eeeecCCccceeeccCCCc
Confidence            9999999998777776542222222221       1222333344443344  7899999999999997654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1e-19  Score=141.77  Aligned_cols=217  Identities=16%  Similarity=0.205  Sum_probs=167.0

Q ss_pred             cCCCCeEEEEecCce---e---eee-----ec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCce---eeeeecCCC
Q 016457           17 CDNVNSIKRFGLKNS---I---QTN-----FG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQ---YSGECKGHS   80 (389)
Q Consensus        17 ~~~~~~i~~w~~~~~---~---~~~-----~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~   80 (389)
                      ++....+|+|.+...   +   ..+     .. ..+++++.|+. +-++|.+++-|.+..|||++++.   ....+-+|.
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD  196 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD  196 (364)
T ss_pred             hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence            344568999998621   1   011     11 67899999986 55789999999999999999873   356677899


Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEee-c-CCeEEEEECcC
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAG-C-GSQIQFWDWRN  155 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~  155 (389)
                      ..|..|+|...+. +.+++.+.||.||+||++..+....+...   ..+...++|++++.++++.- . ...|.|.|+|.
T Consensus       197 KEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  197 KEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             cceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            9999999998654 79999999999999999976654444332   46788999998877665543 3 57899999997


Q ss_pred             C-ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457          156 K-KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DDDLLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       156 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      . .++.++. .|+..|+.|+|.|..++.|++++.|..+.+||+.....  ...++... ..+..|+.+.|++..++.++.
T Consensus       276 P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  276 PCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             CCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEE
Confidence            5 5678888 89999999999999988999999999999999985322  11222222 256789999999777778877


Q ss_pred             EecC
Q 016457          233 LTHI  236 (389)
Q Consensus       233 ~~~d  236 (389)
                      +...
T Consensus       354 ~~~k  357 (364)
T KOG0290|consen  354 CFGK  357 (364)
T ss_pred             EecC
Confidence            7553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=8.7e-18  Score=145.43  Aligned_cols=268  Identities=12%  Similarity=0.139  Sum_probs=174.2

Q ss_pred             cCCCCeEEEEecCc-----eeeeeecCcceEEEeecCCCCeEEEEe-cCCeEEEEeCC-Ccee--eeeecCCCCcEEEEE
Q 016457           17 CDNVNSIKRFGLKN-----SIQTNFGDDYVFEIVPKNDWSLMAVSL-STNVVKLYSPV-TGQY--SGECKGHSSTVNQIS   87 (389)
Q Consensus        17 ~~~~~~i~~w~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~-~~~~--~~~~~~~~~~v~~i~   87 (389)
                      ...++.|.+|++..     .+..+...+....++++|++++|++++ .++.|.+|++. +++.  ..... .......++
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~   86 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS   86 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence            35679999999852     334443356678899999999887765 47889999986 3432  22222 233567899


Q ss_pred             EeCCCCCCEEEEEe-cCCeEEEEEccC-C---eEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceee-
Q 016457           88 FSGPSTPHVLHSCS-SDGTIRAWDTRS-F---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVA-  160 (389)
Q Consensus        88 ~~~~~~~~~l~s~~-~dg~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~-  160 (389)
                      |+|++  ++|++++ .++.|.+|++.+ +   +.+..+.. .....+++++|++++++++.. ++.|.+||+.+...+. 
T Consensus        87 ~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         87 TDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             ECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            99999  6777665 488999999964 2   22333322 345677899999999987776 7999999998633221 


Q ss_pred             ----eeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCcE
Q 016457          161 ----CLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNKH  229 (389)
Q Consensus       161 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~  229 (389)
                          ............++|+|+++ +++++.. ++.|.+||+.........+..+...      ......+.++ +++++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~-pdg~~  241 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT-PDGRH  241 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC-CCCCE
Confidence                11101234567899999997 7766665 8999999997321111222222111      1123357888 67888


Q ss_pred             EEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cCCceEEEEEec
Q 016457          230 LWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TGAGTVGYFPVN  301 (389)
Q Consensus       230 l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~  301 (389)
                      ++++.. ++.|.+|++........+.....         -......+.++|+|+  +|+++ ..++.|.+|+++
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---------~~~~p~~~~~~~dg~--~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQP---------TETQPRGFNIDHSGK--YLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEe---------ccccCCceEECCCCC--EEEEEEccCCcEEEEEEc
Confidence            888754 68999999865432222221110         012345789999999  55544 458999999885

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=146.01  Aligned_cols=257  Identities=16%  Similarity=0.195  Sum_probs=187.3

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc------CCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCC
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR------SFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      +.+.+|.+.|++|.|+.++  ++|++|+.|..+++|++.      +.+++.....| .+.|.|++|+..+..+++++.++
T Consensus        50 KD~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            4457899999999999998  899999999999999986      34566555443 58999999997778888888899


Q ss_pred             eEEEEECcCCceeeeeeeccc---CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457          147 QIQFWDWRNKKQVACLEESHV---EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF  223 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (389)
                      +|...|+++.+.+..+.  |.   +.|..+..+|.. +.|++.+.++.|.+||.+...+ ...+............+.|+
T Consensus       128 ~VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             eeEeeecccceeeeeec--ccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeec
Confidence            99999999999888776  44   489999999997 6999999999999999994321 11222233455667888999


Q ss_pred             cCCCcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          224 GETNKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       224 ~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |....+|++.+..+-+.+||.+... .+..+.....+..      ....-.++.|+|.|.+  +.+--....-.+||+-+
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~------~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ------ENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcc------cchhhhheeeCCCCCe--ehhhhccCCCEEeeeec
Confidence            8888899999999999999988653 2222222211111      1133467889999985  34443444456778877


Q ss_pred             CCccccCCCeEEEecccce-------eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          303 GGAATIGPPEAVLVGGHTA-------VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .++       ..+...|..       .+.++         +|-.|-. ++||+.+=.|.+|++...
T Consensus       276 ~R~-------~V~k~D~N~~GY~N~~T~KS~---------~F~~D~~-v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  276 QRC-------FVLKSDHNPNGYCNIKTIKSM---------TFIDDYT-VATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             ccc-------eeEeccCCCCcceeeeeeeee---------eeeccee-eeccCcccceEEEecCCC
Confidence            554       333333432       22333         5554444 799999999999999865

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.6e-18  Score=150.87  Aligned_cols=300  Identities=13%  Similarity=0.089  Sum_probs=204.4

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCC--c--eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--G--QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      -.++|.+++|.++++|+|..||.|.+|.--.  +  .....+.=|...|++++|+++|  .+|+||+..|.+.+|.+.++
T Consensus       206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--ceEeecccceEEEEEeecCC
Confidence            3479999999999999999999999996322  1  2334556688999999999999  79999999999999999998


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---e-------cccCCeeEEEEecCCCCeEE
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---E-------SHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~-------~~~~~v~~~~~~~~~~~~l~  184 (389)
                      + .+-+..-.++|..+.++|++....+...|+.|.+....+.....++.   .       ...+-.+.++++|.- +.++
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~v  361 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLV  361 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-Ccee
Confidence            8 33344447899999999999999999999999999876554433332   1       123446778899955 4788


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeee-------ccCCceeeEEEecCCCcEEEEEec--------C--CcEEEEEcCCC
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVI-------NVGTSVGKVGFFGETNKHLWCLTH--------I--ETLSIWDWKDG  247 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~--------d--~~i~i~d~~~~  247 (389)
                      -.+..|.|.+||+.+.....+......       .+...+++++.+ ..+.++++.-.        |  -.+++|-....
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~-~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS-RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh-ccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            888999999999986532211111111       122345666666 45777777632        2  26778876544


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc----cCCCeEEEecccceee
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT----IGPPEAVLVGGHTAVV  323 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~----~~~~~~~~~~~h~~~v  323 (389)
                      ..-..+...-       ..+|...+...++.+..+....++++.||.++||-+...+...    .+.+.. +-.-|..++
T Consensus       441 ~kt~~L~T~I-------~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i  512 (792)
T KOG1963|consen  441 SKTFILNTKI-------NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPI  512 (792)
T ss_pred             cceeEEEEEE-------ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee-eeccccCcc
Confidence            3322222110       0127777777666665443356899999999999986543300    001110 101133444


Q ss_pred             eeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          324 RSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ...         +||.||..|+ .+.|++|.+||....
T Consensus       513 ~a~---------~fs~dGslla-~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  513 TAL---------CFSQDGSLLA-VSFDDTITIWDYDTK  540 (792)
T ss_pred             cch---------hhcCCCcEEE-EecCCEEEEecCCCh
Confidence            444         9999997655 556889999999983

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1e-18  Score=158.23  Aligned_cols=277  Identities=14%  Similarity=0.178  Sum_probs=191.4

Q ss_pred             CccccCCCCeEEEEecCc--eeeeeec----CcceEEEeecC--CCCeEEEEecCCeEEEEeCC-C----ceeeeeecC-
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNFG----DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPV-T----GQYSGECKG-   78 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~~----~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~-~----~~~~~~~~~-   78 (389)
                      ..+.+.....|++||..+  .+..+..    ...|+.+.+-.  |..++++|+.||.|+||+-- +    .+.+..+.+ 
T Consensus      1078 ~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L 1157 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL 1157 (1387)
T ss_pred             eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc
Confidence            445555567899999753  4443432    67799998865  44689999999999999632 2    233333322 


Q ss_pred             ------CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCC-CCeEEEeecCCeEEE
Q 016457           79 ------HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGS-TDYLLAAGCGSQIQF  150 (389)
Q Consensus        79 ------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~i  150 (389)
                            ..+.=.-+.|....  .+|+++|.-..|+|||......+..+... ...|+++.-+.. ++.+++|..||.|++
T Consensus      1158 s~~~~~~r~~~~v~dWqQ~~--G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1158 SDQLPGARGTGLVVDWQQQS--GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred             cccCccCCCCCeeeehhhhC--CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEE
Confidence                  11111335676555  46666666789999999988887777654 566777776544 456666667999999


Q ss_pred             EECcCCc---eeeeeeecccCC--eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc---CCceeeEEE
Q 016457          151 WDWRNKK---QVACLEESHVED--VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV---GTSVGKVGF  222 (389)
Q Consensus       151 wd~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~  222 (389)
                      ||.|...   .+...+ .|...  |..+.+.+.|-..|++|+.+|.|++||+|...  ......+..|   ++..+++..
T Consensus      1236 yD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~--~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS--KETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred             eecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--ccccceeeeccccCccceeeee
Confidence            9998653   344444 67776  99999999885469999999999999999631  1122222222   345889999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      + +....+++|+. +.|+||++. |+.+..+.......     -.....+.+++|+|..-  ++++|+.|..|.||....
T Consensus      1313 H-~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~-----~q~~gs~scL~FHP~~~--llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1313 H-EHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM-----GQRIGSVSCLAFHPHRL--LLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             c-cCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc-----cCcCCCcceeeecchhH--hhhhccCCceEEEeecCC
Confidence            8 67778888888 999999986 55554444221111     11346679999999755  789999999999998776


Q ss_pred             CC
Q 016457          303 GG  304 (389)
Q Consensus       303 ~~  304 (389)
                      .+
T Consensus      1383 ~~ 1384 (1387)
T KOG1517|consen 1383 PR 1384 (1387)
T ss_pred             cC
Confidence            54

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=152.78  Aligned_cols=263  Identities=16%  Similarity=0.133  Sum_probs=189.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE-eC-----CCCCCEEEEEecCCeEEEEEc
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF-SG-----PSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~-~~-----~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      ...|.|+.|+.....+.+++ |..+.+|+--+......+.-...-|....+ -+     .+..+.++.++.||.+.|.+ 
T Consensus        14 ~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-   91 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-   91 (737)
T ss_pred             ceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence            44567888888776666555 666666643333222222211121111111 11     11125788899999999987 


Q ss_pred             cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      +.++....+..|.+.+.+-.|+|+|.-|+++|.||.|++|. ++|-...++. ....+|.|++|.|+..+.+.+.+  +.
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h  167 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GH  167 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEecC--Ce
Confidence            56788888899999999999999999999999999999998 6676666665 56788999999999875666554  55


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      +.|=.+.    ....+.....|.+-|.++.|+ +..+++++|+.|-..++||.. |..+..-..            |+.+
T Consensus       168 ~~IKpL~----~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~------------~ey~  229 (737)
T KOG1524|consen  168 ISIKPLA----ANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIWDAQ-GANLFTSAA------------EEYA  229 (737)
T ss_pred             EEEeecc----cccceeEEeccCcEEEEeecC-ccccceeecCCceeEEeeccc-CcccccCCh------------hccc
Confidence            6665555    335577888999999999999 677899999999999999965 555544443            7799


Q ss_pred             eeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      |++++|.|+ .  .++.|+.+ +++                  +.....+.|..+         +||+||..++.|...|
T Consensus       230 ITSva~npd-~--~~~v~S~n-t~R------------------~~~p~~GSifnl---------sWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  230 ITSVAFNPE-K--DYLLWSYN-TAR------------------FSSPRVGSIFNL---------SWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeeeccc-c--ceeeeeee-eee------------------ecCCCccceEEE---------EEcCCCceeeccccCc
Confidence            999999998 3  33444332 222                  223455677888         9999999999999888


Q ss_pred             eEEE
Q 016457          352 RLCC  355 (389)
Q Consensus       352 ~v~i  355 (389)
                      .|.+
T Consensus       279 ~v~~  282 (737)
T KOG1524|consen  279 QLIV  282 (737)
T ss_pred             eEEE
Confidence            8755

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=3e-19  Score=153.46  Aligned_cols=228  Identities=13%  Similarity=0.122  Sum_probs=168.8

Q ss_pred             cCCCCeEEEEecCc-------eeeeeecCcceEEEeecC-CCCeEEEEecCCeEEEEeCCCc-------eeeeeecCCCC
Q 016457           17 CDNVNSIKRFGLKN-------SIQTNFGDDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSS   81 (389)
Q Consensus        17 ~~~~~~i~~w~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~   81 (389)
                      .+.-|.|-+|++.+       .+..+.....|+.+.|+| |...||++++||.|+||.+..+       .+...+..|.+
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            34568899999864       344455578899999999 6689999999999999998654       34566788999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-ee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VA  160 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~  160 (389)
                      .|+.+.|+|-.. +.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|..+++.+.||+|++|..++++. ++
T Consensus       679 KI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~  757 (1012)
T KOG1445|consen  679 KITSLRFHPLAA-DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY  757 (1012)
T ss_pred             eEEEEEecchhh-hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence            999999999775 7999999999999999999999999999999999999999999999999999999999987653 33


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCC----CcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEec
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVD----GLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      .-...-...--.|.|--+|. ++++.+.|    +.|.+||..+-.  ..++... ......+.--.+.++.+-++++|-.
T Consensus       758 Eg~gpvgtRgARi~wacdgr-~viv~Gfdk~SeRQv~~Y~Aq~l~--~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG  834 (1012)
T KOG1445|consen  758 EGKGPVGTRGARILWACDGR-IVIVVGFDKSSERQVQMYDAQTLD--LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG  834 (1012)
T ss_pred             cCCCCccCcceeEEEEecCc-EEEEecccccchhhhhhhhhhhcc--CCcceeeeecccCccccccccCCCceEEEecCC
Confidence            33211223345677888886 65555544    568888877321  0111111 1111111111233345567888888


Q ss_pred             CCcEEEEEcCCCc
Q 016457          236 IETLSIWDWKDGQ  248 (389)
Q Consensus       236 d~~i~i~d~~~~~  248 (389)
                      |..|.+|.+-...
T Consensus       835 D~~v~~yEv~~es  847 (1012)
T KOG1445|consen  835 DRFVNMYEVIYES  847 (1012)
T ss_pred             CceEEEEEecCCC
Confidence            9999999986543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=2.2e-17  Score=133.13  Aligned_cols=237  Identities=14%  Similarity=0.181  Sum_probs=176.8

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC--CeEEEEECcCCc
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKK  157 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~  157 (389)
                      ...+..+.|+.+.  ..|..|+.|| .++|+................|..+-|+  ...++..+.+  ..+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~--~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDS--TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             Ccceeeeeeccce--eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence            3457777798887  6888888888 6888877554433333334455566665  4555555553  469999999888


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee---ccCCceeeEEEecCCCcEEEEEe
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      .+-.+.  ...+|.++.++.+   .|+++=.+ .|+|||++..    +.+..+.   .+...+.+++++ .++.+++.-+
T Consensus        80 ~ICe~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n-~~n~ylAyp~  148 (391)
T KOG2110|consen   80 TICEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDM----KLLHTIETTPPNPKGLCALSPN-NANCYLAYPG  148 (391)
T ss_pred             eEEEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccc----eeehhhhccCCCccceEeeccC-CCCceEEecC
Confidence            887776  6788999999875   45555444 4999999943    3333332   344455666655 4445666432


Q ss_pred             --cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce-EEEEEeccCCccccCCC
Q 016457          235 --HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT-VGYFPVNYGGAATIGPP  311 (389)
Q Consensus       235 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~-i~i~~~~~~~~~~~~~~  311 (389)
                        ..|.|.+||+.+.+.+..+..            |.+.+-+++|+++|.  +||++++.|+ ||||.+.+++.      
T Consensus       149 s~t~GdV~l~d~~nl~~v~~I~a------------H~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~k------  208 (391)
T KOG2110|consen  149 STTSGDVVLFDTINLQPVNTINA------------HKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQK------  208 (391)
T ss_pred             CCCCceEEEEEcccceeeeEEEe------------cCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccE------
Confidence              358999999999999999987            779999999999999  9999999986 68999999887      


Q ss_pred             eEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          312 EAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       312 ~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.++.+|-. ..|.++         +|++++++|++.|..++|.+++++..
T Consensus       209 l~eFRRG~~~~~IySL---------~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSL---------SFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeeeeCCceeeEEEEE---------EECCCCCeEEEecCCCeEEEEEeccc
Confidence            788876654 466777         99999999999999999999999976

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.7e-17  Score=145.73  Aligned_cols=290  Identities=16%  Similarity=0.158  Sum_probs=204.5

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC-CEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP-HVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      .-.|++|+++++... +..|.||...+|+++..+.+|..++..+.+.|.... .++++++.||.|++||...+..+.++.
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            345899998888776 678999999999999999999999999999987743 467799999999999999887776665


Q ss_pred             cCCCCeEE-----------------------------------------------------------EEEeCCCCeEEEe
Q 016457          122 AGSQEIFC-----------------------------------------------------------FSFGGSTDYLLAA  142 (389)
Q Consensus       122 ~~~~~v~~-----------------------------------------------------------~~~~~~~~~l~~~  142 (389)
                      .+ .++..                                                           +.++ .+..+...
T Consensus       100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~-~~ge~~~i  177 (792)
T KOG1963|consen  100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN-NSGEFKGI  177 (792)
T ss_pred             cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc-CCceEEEE
Confidence            43 11111                                                           2222 11222222


Q ss_pred             ecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457          143 GCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       143 ~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                      ..+..+.+|+..+....   ......|...+++.+++|++. ++++|..||.|.+|.--...........+.=|...|.+
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence            33455666666553311   111124677789999999996 99999999999999766422233444555568889999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ++|+ .+|.+|++|+..+.+.+|.+.+++ .+-++.            -..+|..+.++||++  +.+....|..|.+..
T Consensus       257 L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR------------Lgs~I~~i~vS~ds~--~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  257 LSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPR------------LGSPILHIVVSPDSD--LYSLVLEDNQIHLIK  320 (792)
T ss_pred             eEEe-cCCceEeecccceEEEEEeecCCC-cccccc------------cCCeeEEEEEcCCCC--eEEEEecCceEEEEe
Confidence            9999 889999999999999999999987 333332            338899999999999  556666799999998


Q ss_pred             eccCCccc----cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          300 VNYGGAAT----IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       300 ~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..+.....    +..+....+....+-.+.+         +++|.-+.++-.+.-|.|.+|++-.-
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~---------~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGV---------SIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeE---------EEcCCCCceeecCCCceEEEEecccc
Confidence            76544310    0011011111122333444         66776666777888999999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=9.8e-20  Score=150.63  Aligned_cols=232  Identities=11%  Similarity=0.111  Sum_probs=197.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .-.-+.+.++.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+.  +++|++ ....+.||| ..|..+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHne--q~~AVA-QK~y~yvYD-~~GtEl  203 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNE--QFFAVA-QKKYVYVYD-NNGTEL  203 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcch--HHHHhh-hhceEEEec-CCCcEE
Confidence            34556888999999999999999999999999999888874 5689999999887  577666 456799999 568889


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      +.++.+ ..|..+.|.|..-.|++++..|.++.-|+.+|+.+..+. ...+.+..|.-+|-+. .+-+|...|+|.+|..
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSP  280 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccc-eEEEcCCCceEEecCC
Confidence            999886 789999999877777777779999999999999999998 6678899999999986 9999999999999999


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY  277 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (389)
                      .+    ..++..+..|.++|.++++. ++|.++++.+.|..++|||+++...+.++.. +            .+...+++
T Consensus       281 ~s----kePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p------------~~a~~ls~  342 (545)
T KOG1272|consen  281 NS----KEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-P------------HPASNLSL  342 (545)
T ss_pred             CC----cchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeeccccccceeec-C------------CCcccccc
Confidence            84    46788888999999999999 8999999999999999999999887777664 1            45667888


Q ss_pred             cCCCCeEEEEEecCCceEEEEE
Q 016457          278 PGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      |..|   +||.+ ....+.||.
T Consensus       343 Sqkg---lLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  343 SQKG---LLALS-YGDHVQIWK  360 (545)
T ss_pred             cccc---ceeee-cCCeeeeeh
Confidence            8765   44444 556799994

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.7e-16  Score=121.01  Aligned_cols=255  Identities=10%  Similarity=0.075  Sum_probs=179.7

Q ss_pred             CccccCCCCeEEEEecCc------------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee------e
Q 016457           13 KSQSCDNVNSIKRFGLKN------------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY------S   73 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~------------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~------~   73 (389)
                      ..+.++.+|+|-+..++.            .+...++ +++|+.++|..  .+|++|+ ||.|+=|.......      +
T Consensus        24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~l  100 (325)
T KOG0649|consen   24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRL  100 (325)
T ss_pred             EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhh
Confidence            456678889999988742            3334445 88999999983  4777777 69999997653211      1


Q ss_pred             eee--cCCC-----CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457           74 GEC--KGHS-----STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        74 ~~~--~~~~-----~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      ...  ..|.     -.|+++-..|..  +-++.++.|+.+.-||+++|+..+.+++|.+.|.++.-....+.+++++.||
T Consensus       101 we~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  101 WEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             hhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence            111  1122     358899888877  5677777899999999999999999999999999999866889999999999


Q ss_pred             eEEEEECcCCceeeeeee--------cc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCce
Q 016457          147 QIQFWDWRNKKQVACLEE--------SH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV  217 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~--------~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i  217 (389)
                      ++++||.++++.+..+..        +| ...|-+++.+.+   ++++|+ ...+.+|.+++..     ..........+
T Consensus       179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse-----~t~vfpipa~v  249 (325)
T KOG0649|consen  179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSE-----STCVFPIPARV  249 (325)
T ss_pred             cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCC-----ceEEEecccce
Confidence            999999999998887751        11 233566665543   777765 5679999999542     33444566778


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      ..+.|. .+  .+++++..+.+.-|.+. |.........            ...+.+..|+...-+ +|-.++....+.|
T Consensus       250 ~~v~F~-~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~------------s~~c~s~s~~~~p~k-~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  250 HLVDFV-DD--CVLIGGEGNHVQSYTLN-GVLQANIPVE------------STACYSASWQTSPIK-FISIAGFSNKLHI  312 (325)
T ss_pred             eEeeee-cc--eEEEeccccceeeeeec-cEEEEeccCC------------ccceeeecccCCceE-EEEecccceeeee
Confidence            888886 33  78888888889988874 4444444331            133444444443333 4555556666666


Q ss_pred             E
Q 016457          298 F  298 (389)
Q Consensus       298 ~  298 (389)
                      +
T Consensus       313 ~  313 (325)
T KOG0649|consen  313 L  313 (325)
T ss_pred             e
Confidence            5

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=9.7e-19  Score=147.40  Aligned_cols=208  Identities=15%  Similarity=0.199  Sum_probs=167.8

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCF  130 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  130 (389)
                      ..|+.++.||.+.|.+ +.++....+.+|.+.+.+-.|+|+|  .-|++++.||.|++|. ++|-...++.....+|.|+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            5788888999999998 5588888899999999999999999  6899999999999998 5565555555567899999


Q ss_pred             EEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee
Q 016457          131 SFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       131 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  210 (389)
                      +|.|+.+.++.+.. +.+.|=-+.....+...+ +|.+-|.++.|++.. +++++|++|-..++||-..     ..+...
T Consensus       152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G-----~~Lf~S  223 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG-----ANLFTS  223 (737)
T ss_pred             EECCCCCceEEecC-CeEEEeecccccceeEEe-ccCcEEEEeecCccc-cceeecCCceeEEeecccC-----cccccC
Confidence            99999888777655 677776777666777777 899999999999998 4999999999999999984     345666


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                      ..|+.+|++++|. |+ ..++.++. ++++            +..+           ..+.|..++|++||.  -+++|.
T Consensus       224 ~~~ey~ITSva~n-pd-~~~~v~S~-nt~R------------~~~p-----------~~GSifnlsWS~DGT--Q~a~gt  275 (737)
T KOG1524|consen  224 AAEEYAITSVAFN-PE-KDYLLWSY-NTAR------------FSSP-----------RVGSIFNLSWSADGT--QATCGT  275 (737)
T ss_pred             Chhccceeeeeec-cc-cceeeeee-eeee------------ecCC-----------CccceEEEEEcCCCc--eeeccc
Confidence            6789999999999 55 45555543 2333            2221           447899999999999  668888


Q ss_pred             CCceEEEE
Q 016457          291 GAGTVGYF  298 (389)
Q Consensus       291 ~dg~i~i~  298 (389)
                      ..|.+.+=
T Consensus       276 ~~G~v~~A  283 (737)
T KOG1524|consen  276 STGQLIVA  283 (737)
T ss_pred             cCceEEEe
Confidence            88876654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=2.5e-16  Score=124.66  Aligned_cols=296  Identities=14%  Similarity=0.111  Sum_probs=197.1

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCC--cEEEEEEeCCCCCCEEE-EEecC------CeEEEEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS--TVNQISFSGPSTPHVLH-SCSSD------GTIRAWD  110 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~l~-s~~~d------g~i~iwd  110 (389)
                      ...+++|+.|...+++|.++| .+||+.+.-+....-+.+.+  .+..+-|-.    ++|+ .||.+      +.|.|||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence            345699999999999998666 89999875433222222222  233333432    2444 44433      4699999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-CCceeeeeee-cccCCeeEEEEecCCCCeEEE-Ee
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-NKKQVACLEE-SHVEDVTQVHFVPNNQNKVVS-AS  187 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~-~~  187 (389)
                      -...+++.++.. ..+|.++.+.  ..++++. ..+.|++|... +.+.+..+.. .......+++-+.+.. +|+. |-
T Consensus        82 D~k~~~i~el~f-~~~I~~V~l~--r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~  156 (346)
T KOG2111|consen   82 DLKERCIIELSF-NSEIKAVKLR--RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGF  156 (346)
T ss_pred             cccCcEEEEEEe-ccceeeEEEc--CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCC
Confidence            777788888876 5899999996  3444444 45899999987 4455555541 1233344444333332 4444 44


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCccC
Q 016457          188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      .-|.|.|-|+....  ......+..|.+.|.+++.+ .+|..+++++..| -|+|||..++..+..+..+.         
T Consensus       157 k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------  224 (346)
T KOG2111|consen  157 KTGQVQIVDLASTK--PNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------  224 (346)
T ss_pred             ccceEEEEEhhhcC--cCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---------
Confidence            56899999998542  11356778999999999999 8899999999999 47999999999999988654         


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc----CCCeE-EEecccceeeeecc----CCCcccCCCC
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI----GPPEA-VLVGGHTAVVRSVL----PMPSVQGRPA  337 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~----~~~~~-~~~~~h~~~v~~~~----~~~~~~~~~~  337 (389)
                       ....|.+++|+|+..  +|++.|..|+|+||.+........    ..+.. .++ .--+..++++    +.+....++|
T Consensus       225 -d~A~iy~iaFSp~~s--~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lp-ky~~S~wS~~~f~l~~~~~~~~~f  300 (346)
T KOG2111|consen  225 -DRADIYCIAFSPNSS--WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLP-KYFSSEWSFAKFQLPQGTQCIIAF  300 (346)
T ss_pred             -chheEEEEEeCCCcc--EEEEEcCCCeEEEEEeecCCCCccccccccccccccc-hhcccceeEEEEEccCCCcEEEEe
Confidence             447899999999999  999999999999999876442110    00000 111 1111123332    5566666688


Q ss_pred             CCCceeEEEecCCCeEEEEeccCC
Q 016457          338 QSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       338 s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      -.+..-++..+.||.-+-+.++..
T Consensus       301 g~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  301 GSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             cCCCCeEEEEEeCCcEEEEEeccc
Confidence            887555666667888765555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.80  E-value=5.2e-16  Score=133.98  Aligned_cols=309  Identities=13%  Similarity=0.053  Sum_probs=192.0

Q ss_pred             CCCCeEEEEecC--ceeeeeecCcce-EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           18 DNVNSIKRFGLK--NSIQTNFGDDYV-FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        18 ~~~~~i~~w~~~--~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ..++.|.+.|..  +.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+.+++.- .....+++++++  
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG--   89 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDG--   89 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TT--
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCC--
Confidence            457899999985  466777653333 45789999999999999999999999999999998854 456789999999  


Q ss_pred             CEEEEEe-cCCeEEEEEccCCeEEEEEEcC-------CCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeec
Q 016457           95 HVLHSCS-SDGTIRAWDTRSFHEVWSVTAG-------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        95 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      ++++++. ..+.+.++|.++.+.++.+...       ...+..+..+|....+++.-. .+.|.+.|....+.+..-...
T Consensus        90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence            6777654 7899999999999999888753       346778888888887776666 489999998766543221113


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----ccCCceeeE-------EEec-CCCcEEEEE
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----NVGTSVGKV-------GFFG-ETNKHLWCL  233 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~-------~~~~-~~~~~l~~~  233 (389)
                      .........|+|+++.++++...++.|-++|..++.    ....+.    .|..+...+       .|.. ..+...++.
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence            456678899999997445556677899999988542    121111    122222211       1210 112222233


Q ss_pred             ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe----cCCceEEEEEeccCCccccC
Q 016457          234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG----TGAGTVGYFPVNYGGAATIG  309 (389)
Q Consensus       234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g----~~dg~i~i~~~~~~~~~~~~  309 (389)
                      -....+.+||..+.+.++++...            ... .-+..+|+++  ++...    ...+.|.++|..+.+.    
T Consensus       246 ig~~~v~v~d~~~wkvv~~I~~~------------G~g-lFi~thP~s~--~vwvd~~~~~~~~~v~viD~~tl~~----  306 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVVKTIPTQ------------GGG-LFIKTHPDSR--YVWVDTFLNPDADTVQVIDKKTLKV----  306 (369)
T ss_dssp             EE--TTT-STTTBTSEEEEEE-S------------SSS---EE--TT-S--EEEEE-TT-SSHT-EEEEECCGTEE----
T ss_pred             ccCCccccchhhcCeEEEEEECC------------CCc-ceeecCCCCc--cEEeeccCCCCCceEEEEECcCcce----
Confidence            33345667888888999888852            244 7788899999  55554    4568999999998754    


Q ss_pred             CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec--CCCeEEEEeccCCcc
Q 016457          310 PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG--EDGRLCCWLSDDSSE  363 (389)
Q Consensus       310 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~v~iW~~~~~~~  363 (389)
                        +..+..+-...+..+         .|++||+++..+.  .+|.|.+||..+..+
T Consensus       307 --~~~i~~~~~~~~~h~---------ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  307 --VKTITPGPGKRVVHM---------EFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             --EE-HHHHHT--EEEE---------EE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             --eEEEeccCCCcEecc---------EECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence              344432222346677         9999999765554  444799999887643

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.3e-18  Score=146.99  Aligned_cols=228  Identities=19%  Similarity=0.257  Sum_probs=162.8

Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCC--CCeEEEeecCCeE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGS--TDYLLAAGCGSQI  148 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i  148 (389)
                      ..+.+.||++.|++++|+.+|  .+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-|.  +..+++++.|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG--~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADG--ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCC--CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            345678999999999999999  799999999999999999888888775 67999999999884  4456666779999


Q ss_pred             EEEECcC----------CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--CC----ccceeeec
Q 016457          149 QFWDWRN----------KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--DD----DLLESVIN  212 (389)
Q Consensus       149 ~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~----~~~~~~~~  212 (389)
                      +++|+..          .+....+. .|...|..|+-.|++++.+.++++||+++-||++....  ..    ..+..+..
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            9999984          22344455 78999999999999999999999999999999994210  00    00111111


Q ss_pred             cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-c-----------------eeEEeecccccccCCccCC-CCCcee
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-Q-----------------NVASFENARSLASDSWTLD-DVDYFV  273 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~-----------------~~~~~~~~~~~~~~~~~~~-~~~~i~  273 (389)
                      .--...++.++|.+..+|++|+.|-..++||.+.. +                 ++.-|..... ........ ....++
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQGNLDRYITCCT  277 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCcccccccceeeeE
Confidence            12345788899888899999999999999995311 0                 1222221110 00000000 112356


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      -+.|+|+|.++ |++-+ .-.|++||+..++-
T Consensus       278 ~vtfnpNGtEl-Lvs~~-gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  278 YVTFNPNGTEL-LVSWG-GEHVYLFDVNEDKS  307 (758)
T ss_pred             EEEECCCCcEE-EEeeC-CeEEEEEeecCCCC
Confidence            68899999975 44433 33699999987764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=3.1e-18  Score=131.87  Aligned_cols=264  Identities=13%  Similarity=0.207  Sum_probs=180.4

Q ss_pred             CccccCCCCeEEEEecCc--eeeeee--cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNF--GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      +.-++...|.|++|.+..  ....++  +...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+.   .|.-.++++.|
T Consensus        27 rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgF  102 (323)
T KOG0322|consen   27 RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGF  102 (323)
T ss_pred             hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---Eeeeecccccc
Confidence            355677889999999863  344444  3788999998887 477888899999999987654332   24455666666


Q ss_pred             eCCCCCCEEEEEecCC-eEEEE-----------EccCCeEEEEEE----cCCCCeEEEEEeC-CC-CeEEEee-cCCeEE
Q 016457           89 SGPSTPHVLHSCSSDG-TIRAW-----------DTRSFHEVWSVT----AGSQEIFCFSFGG-ST-DYLLAAG-CGSQIQ  149 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg-~i~iw-----------d~~~~~~~~~~~----~~~~~v~~~~~~~-~~-~~l~~~~-~d~~i~  149 (389)
                      ++..    +...+... .+-.+           |......+....    ...+.+.|..+.. .+ ..++++| .+|.+.
T Consensus       103 CrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv  178 (323)
T KOG0322|consen  103 CRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVV  178 (323)
T ss_pred             ccce----eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEE
Confidence            6532    22111111 11111           111111111111    1135566666432 22 2344444 499999


Q ss_pred             EEECcCCceeeeee---------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          150 FWDWRNKKQVACLE---------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       150 iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                      +||+.++..+..+.         ..|..+|.++.+.+.-. .=++|+.+..+..|++.-............-.+..|..+
T Consensus       179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gv  257 (323)
T KOG0322|consen  179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGV  257 (323)
T ss_pred             EEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEecCCCccce
Confidence            99999874433332         26889999999997763 677888888999999874322222222333344567788


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      ..- ++++.+++++.|+.|++|+.++.+++..+..            |...|.+++|+|+.+  ++++++.|++|.+|++
T Consensus       258 rIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLky------------Hsagvn~vAfspd~~--lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  258 RIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKY------------HSAGVNAVAFSPDCE--LMAAASKDARISLWKL  322 (323)
T ss_pred             EEc-cCCcEEeecccCCcEEEEEeccCCchhhhhh------------hhcceeEEEeCCCCc--hhhhccCCceEEeeec
Confidence            887 8899999999999999999999999999987            679999999999977  8899999999999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.1e-18  Score=141.27  Aligned_cols=202  Identities=17%  Similarity=0.202  Sum_probs=159.5

Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      ..++|++++  ..+++|+.||++|||+..+...+.....|...|.++.|+|++..|++.+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~g--s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDG--SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCC--CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            678999998  699999999999999988888888888889999999999999999999998 99999999997777665


Q ss_pred             -ecccCCeeEEEEecCC--CCeEE--EEeCCCcEEEEecCCCCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457          164 -ESHVEDVTQVHFVPNN--QNKVV--SASVDGLICTFDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       164 -~~~~~~v~~~~~~~~~--~~~l~--~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                       .........+.|+.++  +.+++  ....-+.|+.||+...... .-...+.......|.+++.+ ++|++++.|+.||
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-DDGKFLALGTMDG  303 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-CCCcEEEEeccCC
Confidence             2233456677787665  11222  2334566777777643211 11222333345689999999 8999999999999


Q ss_pred             cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .|-|++..+.+.++.++..           |...|+.+.|+|+.+  ++++-+.+..+.+..+.-
T Consensus       304 sVai~~~~~lq~~~~vk~a-----------H~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEA-----------HLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEEEEeceeeeeEeehhh-----------heeeeeeEEEcCCcC--cccccccCCceeEEEEee
Confidence            9999999888877766653           889999999999998  788888999999988765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=5.4e-17  Score=149.40  Aligned_cols=275  Identities=18%  Similarity=0.161  Sum_probs=186.3

Q ss_pred             EeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------eEEEEEEcCCCCeEEEEEeCCCC
Q 016457           65 YSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------HEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        65 w~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      |+++ |..+..+..|...|..++.++... .+++||+.||+|++||.+.-       +...++......+.++.+.+.+.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~-s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHT-SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCC-ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            5543 788888888999999999887653 69999999999999998632       23334443468899999998999


Q ss_pred             eEEEeecCCeEEEEECcCCce-------eeeeee-cccCCeeEEEEecCCCC-eEEEEeCCCcEEEEecCCCCCCCccce
Q 016457          138 YLLAAGCGSQIQFWDWRNKKQ-------VACLEE-SHVEDVTQVHFVPNNQN-KVVSASVDGLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       138 ~l~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (389)
                      .+++++.||.|.+.++.....       ...... ..+.-+..-+|...... .++.+..-+.|..||+++...  ....
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~--~w~l 1189 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD--AWRL 1189 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--HHhh
Confidence            999999999999999875211       111111 11222333344443334 788889999999999995421  1122


Q ss_pred             eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC--eEEE
Q 016457          209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE--NLWV  286 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l  286 (389)
                      +.....+.|++++.+ +.+.++++|+..|.+.+||++=+.++.....           ++..++..+..+|-.+  ...+
T Consensus      1190 k~~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~-----------P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEH-----------PARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             hcCccccceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccC-----------cccCCcceEEeeccCCCCceEE
Confidence            233345789999999 6778999999999999999987766665543           3456777777666433  3234


Q ss_pred             EEec-CCceEEEEEeccCCccccCCCeEEEecccceeeeecc-CC-----Cc---ccCCCCCCCceeEEEecCCCeEEEE
Q 016457          287 IGGT-GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL-PM-----PS---VQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       287 ~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~-----~~---~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      .+|+ ..+.|.+|++.++..      ...+..+...+...-. |.     +.   ...+++...+.++.+|+.|..||.|
T Consensus      1258 s~~~~~~nevs~wn~~~g~~------~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLR------QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred             EecccCCCceeeeecccCcc------eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence            4444 578999999998864      2222211111111111 21     11   1223555667789999999999999


Q ss_pred             eccCC
Q 016457          357 LSDDS  361 (389)
Q Consensus       357 ~~~~~  361 (389)
                      |...+
T Consensus      1332 D~~~p 1336 (1431)
T KOG1240|consen 1332 DPTRP 1336 (1431)
T ss_pred             cCCCc
Confidence            98865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=4.1e-17  Score=145.49  Aligned_cols=230  Identities=13%  Similarity=0.019  Sum_probs=155.4

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCC
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS  135 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  135 (389)
                      +..|.+||..... ...+..|...+...+|+|++  +.|+.++.+   ..|.+||+.+++.... .........++|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG--~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDG--SKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCC--CEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCC
Confidence            3689999986444 55666788889999999999  678876643   3699999988754322 222233457899999


Q ss_pred             CCeEEEee-cCCeEEEE--ECcCCceeeeeeecccCCeeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeee
Q 016457          136 TDYLLAAG-CGSQIQFW--DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       136 ~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      +..|+.+. .+|.+.||  |+.+++ ...+. .+...+....|+|+|+ .|+ ++..++...+|++......   .. ..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~-~i~f~s~~~g~~~I~~~~~~~~~---~~-~l  331 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLT-SGAGNNTEPSWSPDGQ-SILFTSDRSGSPQVYRMSASGGG---AS-LV  331 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeec-cCCCCcCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC---eE-Ee
Confidence            99988876 47765554  665554 44455 4666788999999997 555 4446788888887632211   11 11


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      .+..  ....|+ ++++.|+..+.++ +.+||+.+++.......              .....+.|+|+|+  +|+.++.
T Consensus       332 ~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--------------~~~~~~~~sPdG~--~i~~~s~  391 (429)
T PRK01742        332 GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--------------FLDESPSISPNGI--MIIYSST  391 (429)
T ss_pred             cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--------------CCCCCceECCCCC--EEEEEEc
Confidence            2322  456788 7788887777654 56699988765432221              1124577999999  7888888


Q ss_pred             CceEEEEEecc--CCccccCCCeEEEecccceeeeec
Q 016457          292 AGTVGYFPVNY--GGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       292 dg~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      +|.+.+|.+..  ++.      ...+. +|.+.+...
T Consensus       392 ~g~~~~l~~~~~~G~~------~~~l~-~~~g~~~~p  421 (429)
T PRK01742        392 QGLGKVLQLVSADGRF------KARLP-GSDGQVKFP  421 (429)
T ss_pred             CCCceEEEEEECCCCc------eEEcc-CCCCCCCCc
Confidence            88888887643  332      46665 777777777

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=5.5e-17  Score=144.71  Aligned_cols=231  Identities=10%  Similarity=0.019  Sum_probs=160.1

Q ss_pred             CCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCC
Q 016457           19 NVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        19 ~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~   91 (389)
                      .+..|++||... ..+.+.. ...+.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|+
T Consensus       182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            357899999753 3444444 6789999999999999987654   3799999988753  3334444   346899999


Q ss_pred             CCCCEEEEE-ecCCeEEEE--EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-eeeeeeecc
Q 016457           92 STPHVLHSC-SSDGTIRAW--DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK-QVACLEESH  166 (389)
Q Consensus        92 ~~~~~l~s~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~  166 (389)
                      +  +.|+.+ +.+|.+.||  |+.+++. ..+..+...+....|+|++..++.++. ++...||++.... ....+  .+
T Consensus       259 G--~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~  333 (429)
T PRK01742        259 G--SRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GG  333 (429)
T ss_pred             C--CEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cC
Confidence            9  567665 468876665  5555543 455556677889999999998877664 7888888775432 22222  23


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc--
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW--  244 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~--  244 (389)
                      ..  .+..|+|+++ .|+.++.++ +.+||+.++..     ..+... .....+.|+ +++++|+.++.++.+.+|++  
T Consensus       334 ~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~-~~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        334 RG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST-----EVLSST-FLDESPSIS-PNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             CC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe-----EEecCC-CCCCCceEC-CCCCEEEEEEcCCCceEEEEEE
Confidence            33  4678999996 777777654 66699986531     111111 123567898 78899999999998888875  


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE  280 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (389)
                      .+++.++.+..            |...+...+|+|-
T Consensus       403 ~~G~~~~~l~~------------~~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPG------------SDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccC------------CCCCCCCcccCCC
Confidence            35777777765            4567888899884

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.5e-19  Score=159.71  Aligned_cols=248  Identities=15%  Similarity=0.162  Sum_probs=185.8

Q ss_pred             eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      +.++.+.+|.+.|.|+.|...+  .++++|+.|..++||...++.++....+|.+.|+.++.+.++-.+++++.|..|++
T Consensus       181 k~ikrLlgH~naVyca~fDrtg--~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTG--RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHhhhhheeeeeecccc--ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            3445678899999999999888  79999999999999999999999999999999999999966667777778999999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      |.+..+.++..+. +|++.|++|+|+|-.     +.+.||++++||.+-......+.........-+.++.|. .++..+
T Consensus       259 Wrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f  331 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRF  331 (1113)
T ss_pred             EecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc-cccccc
Confidence            9999999999998 999999999999963     678899999999982110000000111223456666676 677789


Q ss_pred             EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457          231 WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP  310 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~  310 (389)
                      ++++.|+.-..|.+.......                  ..+.-+.++.+-.. +.++.-.+-.+.+|++.++++     
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~------------------~~lif~t~ssd~~~-~~~~ar~~~~~~vwnl~~g~l-----  387 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRS------------------NLLIFVTRSSDLSS-IVVTARNDHRLCVWNLYTGQL-----  387 (1113)
T ss_pred             ccccCCcccccchhhHhhhhc------------------cceEEEeccccccc-cceeeeeeeEeeeeecccchh-----
Confidence            999999988888764321111                  11111111111111 567777888999999999876     


Q ss_pred             CeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCCc
Q 016457          311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       311 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~~  362 (389)
                       +..+ .+|...+..+         .++|-.. ...+++.||...||++-.+.
T Consensus       388 -~H~l-~ghsd~~yvL---------d~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  388 -LHNL-MGHSDEVYVL---------DVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             -hhhh-cccccceeee---------eecCCCcHhhhhccCCCceEeeecccCC
Confidence             3444 4888888888         5555443 34789999999999998873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=6.3e-17  Score=128.69  Aligned_cols=288  Identities=11%  Similarity=0.060  Sum_probs=198.2

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA  122 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  122 (389)
                      -++|+|+|+++|+++.- .+.|-|.++-+..+.+.. -+.|.-+.|..+.. ..|.....|+.|.+|++...+-..++..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEecc
Confidence            45799999999999854 788889888877766653 45677899998874 4566678899999999999998889998


Q ss_pred             CCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC------------
Q 016457          123 GSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD------------  189 (389)
Q Consensus       123 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------  189 (389)
                      ...++.+++|+|+++.++..+. +-.|.+|.+.+.+....--  -+..+..++|+|+|+ +.+..+..            
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCc-eeeeeecccHHHHHHHHhhH
Confidence            8999999999999988877776 8999999998765543221  233457888999986 66555431            


Q ss_pred             ------------------------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          190 ------------------------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       190 ------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                                              ..+.+||.--    ...+. .....-.+..++|+ |.+++|++|+.|+.+++.+--
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~-aYe~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVY-AYERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEEecchh----hheee-eeeeccceeEEEec-cccceEEeeccchhhhhhcee
Confidence                                    1223333220    00000 11223467889999 778999999999999887654


Q ss_pred             CCceeEEeecc-----------------------------cccccC-Ccc------------------------CCCCCc
Q 016457          246 DGQNVASFENA-----------------------------RSLASD-SWT------------------------LDDVDY  271 (389)
Q Consensus       246 ~~~~~~~~~~~-----------------------------~~~~~~-~~~------------------------~~~~~~  271 (389)
                      +.+.+..|...                             .....+ .|.                        .+....
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            33322111100                             000000 000                        001234


Q ss_pred             eeeecccCCCCeEEEEEecCC--ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457          272 FVDCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                      +--++|++|..  |+++-...  ..+.+||+...++       ..+. ....+|+..         .|+|....|+.+..
T Consensus       321 ~g~lafs~Ds~--y~aTrnd~~PnalW~Wdlq~l~l-------~avL-iQk~piraf---------~WdP~~prL~vctg  381 (447)
T KOG4497|consen  321 AGKLAFSCDST--YAATRNDKYPNALWLWDLQNLKL-------HAVL-IQKHPIRAF---------EWDPGRPRLVVCTG  381 (447)
T ss_pred             cceeeecCCce--EEeeecCCCCceEEEEechhhhh-------hhhh-hhccceeEE---------EeCCCCceEEEEcC
Confidence            56689999988  87776443  6899999998775       3332 355678888         88888888888877


Q ss_pred             CCeEEEEeccCC
Q 016457          350 DGRLCCWLSDDS  361 (389)
Q Consensus       350 dg~v~iW~~~~~  361 (389)
                      ...+++|.....
T Consensus       382 ~srLY~W~psg~  393 (447)
T KOG4497|consen  382 KSRLYFWAPSGP  393 (447)
T ss_pred             CceEEEEcCCCc
Confidence            788999987754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=5.3e-18  Score=139.01  Aligned_cols=196  Identities=14%  Similarity=0.109  Sum_probs=151.0

Q ss_pred             EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      .+++|+++|..|++|+.||++|||++.....+.....|...|.++.|+||+  ++|++.+.| ..+||+++++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEEeccCchhhhcC
Confidence            689999999999999999999999988888888888899999999999999  799999999 89999999997665544


Q ss_pred             c--CCCCeEEEEEeCCC---CeEEEeec--CCeEEEEECcCCce-----eeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          122 A--GSQEIFCFSFGGST---DYLLAAGC--GSQIQFWDWRNKKQ-----VACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       122 ~--~~~~v~~~~~~~~~---~~l~~~~~--d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      .  .+..+..+.|+.++   ..++++..  -+.|..||+.....     ..+.. .....|++++.+++|+ +++.|+.|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGk-f~AlGT~d  302 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGK-FLALGTMD  302 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCc-EEEEeccC
Confidence            2  24456677787444   23333332  45666666543221     11221 2335799999999996 99999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      |.|.|++..+-   .........|...|+.+.|+ |+.+++++.+.+.+..+..+.-
T Consensus       303 GsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEecee---eeeEeehhhheeeeeeEEEc-CCcCcccccccCCceeEEEEee
Confidence            99999999842   22333345688899999999 6778899999998888877653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=1.7e-16  Score=125.75  Aligned_cols=213  Identities=9%  Similarity=0.086  Sum_probs=164.4

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  155 (389)
                      -.++|+|.+|+++.  ..++.+-....|.||.....   +..++++.|...|++++|+|..++|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            45789999999999  78999999999999988754   46789999999999999999999999999999999999843


Q ss_pred             C---ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457          156 K---KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       156 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      +   ++...+. .+....+++.|+|.+ |.|++|+.-..|.+|-++....-.-....-..+.+.|.++.|+ +++-+|++
T Consensus        87 ~~~WkptlvLl-RiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh-pnnVLlaa  163 (361)
T KOG1523|consen   87 GGTWKPTLVLL-RINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH-PNNVLLAA  163 (361)
T ss_pred             CCeeccceeEE-EeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc-CCcceecc
Confidence            3   3444454 588999999999999 6999999999999998884321111111223456789999999 67788999


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCcc-----------C-CCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWT-----------L-DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      |+.|+..++|..-    ++.+....  +...|.           . ...+.+..+.|+|.|.  .|+-.+.|..+.+-|.
T Consensus       164 Gs~D~k~rVfSay----IK~Vdekp--ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  164 GSTDGKCRVFSAY----IKGVDEKP--APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDA  235 (361)
T ss_pred             cccCcceeEEEEe----eeccccCC--CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeec
Confidence            9999999999742    11111100  001111           0 1458899999999999  6788889999999988


Q ss_pred             ccCC
Q 016457          301 NYGG  304 (389)
Q Consensus       301 ~~~~  304 (389)
                      ....
T Consensus       236 ~~p~  239 (361)
T KOG1523|consen  236 AGPS  239 (361)
T ss_pred             CCCc
Confidence            7654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.76  E-value=9.1e-17  Score=128.47  Aligned_cols=313  Identities=16%  Similarity=0.203  Sum_probs=200.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-e----eeeeecCCC------------CcEEEEEEeCCCCCCEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-Q----YSGECKGHS------------STVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~s~  100 (389)
                      .+-|.++.|..+|.+||+|..+|.|.++.-+.. +    ....++.|.            ..|..+.|.+++....++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            677899999999999999999999999964322 1    233344443            56899999998866778888


Q ss_pred             ecCCeEEEEEccCCe-----------------------------------EEEEE-EcCCCCeEEEEEeCCCCeEEEeec
Q 016457          101 SSDGTIRAWDTRSFH-----------------------------------EVWSV-TAGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~-----------------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                      +.|.+|++|.+....                                   +.+.+ ..|.-.|+++.++.+...+ .++.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~-lSAD  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF-LSAD  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE-eecc
Confidence            899999999876321                                   11111 2456778999999555544 4556


Q ss_pred             CCeEEEEECcCCce---eeeeee----cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC------------c
Q 016457          145 GSQIQFWDWRNKKQ---VACLEE----SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD------------D  205 (389)
Q Consensus       145 d~~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------~  205 (389)
                      |=.|.+|+++--..   +..+++    .-..-|++..|+|...+.++-.+..|+|++.|+|....-.            .
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            78999999874322   222220    1234588999999988899999999999999999321000            0


Q ss_pred             cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-CCCceeEEeecccccccCCccCCCCCce---eeecccCCC
Q 016457          206 LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-KDGQNVASFENARSLASDSWTLDDVDYF---VDCHYPGEG  281 (389)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~  281 (389)
                      ....+...-..|..+.|+ ++|.++++-.. -+|++||+ ...+++.+++.+..+.......-..+.|   ..++|+.++
T Consensus       264 ~rsffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             chhhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence            001111123568889999 88888876433 58999999 4566777776543222111111112223   457888888


Q ss_pred             CeEEEEEecCCceEEEEEeccCCcccc--------------CCCeEEEecccc----eeeeeccCCCcccCCCCCCCcee
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYGGAATI--------------GPPEAVLVGGHT----AVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~--------------~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                      .  ++++|+.....++|+...+.....              .++......|..    ..+.++-....++..+|+|....
T Consensus       342 ~--~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~  419 (433)
T KOG1354|consen  342 S--YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS  419 (433)
T ss_pred             c--eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence            7  899999999999999766543110              111111111111    01222223344555689999998


Q ss_pred             EEEecCCCeEEEE
Q 016457          344 GWTGGEDGRLCCW  356 (389)
Q Consensus       344 l~s~~~dg~v~iW  356 (389)
                      +|.+... .+.++
T Consensus       420 ia~aatn-nlyif  431 (433)
T KOG1354|consen  420 IAVAATN-NLYIF  431 (433)
T ss_pred             eeeeecC-ceEEe
Confidence            8887743 45554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=138.40  Aligned_cols=270  Identities=14%  Similarity=0.183  Sum_probs=195.7

Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCC--CCeEEEeecCCeE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGS--TDYLLAAGCGSQI  148 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i  148 (389)
                      +...+..|.+.|..|.|+..|  ..|++|+.|..|.+||...++....+. +|...|....|-|.  ...++.++.||.+
T Consensus       134 l~~kL~~H~GcVntV~FN~~G--d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRG--DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccC--ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            345677899999999999999  799999999999999999888776665 56777777777764  4568888889999


Q ss_pred             EEEECcCCc-e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC---ceeeEEE
Q 016457          149 QFWDWRNKK-Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT---SVGKVGF  222 (389)
Q Consensus       149 ~iwd~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~  222 (389)
                      ++=.+.... .  ...+. .|.++|.-++.-|..++.|.+++.|+.+.-+|++......... ....+..   ....++.
T Consensus       212 r~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAV  289 (559)
T ss_pred             eeeeeccccceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEec
Confidence            987765332 2  33444 7999999999999999999999999999999999765433333 2222333   5678888


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCCCce------eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKDGQN------VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      .|.+...+++++.|..+++||.+.-..      +..+..+....      ...-.|++++|+.++..  |.+.-.|-.|+
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~------d~~v~ITgl~Ysh~~sE--lLaSYnDe~IY  361 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE------DDPVNITGLVYSHDGSE--LLASYNDEDIY  361 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc------cCcccceeEEecCCccc--eeeeecccceE
Confidence            877777999999999999999874322      23332211111      13467999999988774  34555777899


Q ss_pred             EEEeccCCc------cccCCCeEEEecccc--eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          297 YFPVNYGGA------ATIGPPEAVLVGGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       297 i~~~~~~~~------~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +|.-..+.-      ......+...+.||.  ..|..+.        -|-|...|++||++-|.|.||+-...
T Consensus       362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN--------FfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN--------FFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             EeccccccCCCCCCCcchhhccchhhcccccccccceee--------eccCccceEEecCccceEEEEecchh
Confidence            995433321      001123344345886  3466662        46788999999999999999997654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=2.5e-16  Score=133.06  Aligned_cols=252  Identities=15%  Similarity=0.147  Sum_probs=168.1

Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCe----EEEEEEcCCCCeEEEEE-----eCCCCeEEEeecCCeEEEEECcCCce
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFH----EVWSVTAGSQEIFCFSF-----GGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      +.+++.+++|+-.-. ..+.+|+.+.+.    ++..........+|-+|     .|.+-.++.+=.-|.|.+.|....+.
T Consensus       129 ~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~  207 (636)
T KOG2394|consen  129 TNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV  207 (636)
T ss_pred             ccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHH
Confidence            333333356665433 358888877432    22111111233334444     23455577777789999999876332


Q ss_pred             eeeee---ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC------------------------CCccceeee
Q 016457          159 VACLE---ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN------------------------DDDLLESVI  211 (389)
Q Consensus       159 ~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------------~~~~~~~~~  211 (389)
                      .+.+.   .-.+..++|+.|-|.+++.++++..+|.+++||..-...                        ...++....
T Consensus       208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~  287 (636)
T KOG2394|consen  208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH  287 (636)
T ss_pred             HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE
Confidence            22111   023478999999999888999999999999998752110                        012222333


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      .....|...+|+ +++++|++.+.||.++|||..+.+.+.....            .-+...+++|+|||+  ||++|++
T Consensus       288 ~~~g~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS------------YFGGLLCvcWSPDGK--yIvtGGE  352 (636)
T KOG2394|consen  288 IGEGSINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKS------------YFGGLLCVCWSPDGK--YIVTGGE  352 (636)
T ss_pred             eccccccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHh------------hccceEEEEEcCCcc--EEEecCC
Confidence            334678899999 6999999999999999999988776654443            236789999999999  9999999


Q ss_pred             CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCccc--------------------------CCCCCCCc----
Q 016457          292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQ--------------------------GRPAQSHG----  341 (389)
Q Consensus       292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------------------~~~~s~~~----  341 (389)
                      |-.|.||.+..++.      +..= .||...|..|..++-..                          .-..+.++    
T Consensus       353 DDLVtVwSf~erRV------VARG-qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s  425 (636)
T KOG2394|consen  353 DDLVTVWSFEERRV------VARG-QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLS  425 (636)
T ss_pred             cceEEEEEeccceE------EEec-cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccc
Confidence            99999999998876      4444 48999999994331000                          00111122    


Q ss_pred             ---------eeEEEecCCCeEEEEeccCCc
Q 016457          342 ---------IFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       342 ---------~~l~s~~~dg~v~iW~~~~~~  362 (389)
                               -.+.|.|.|-.+++||+....
T Consensus       426 ~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  426 SFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             ccccccceEEEeecccccceEEEEecchhh
Confidence                     247888999999999998653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=4.2e-18  Score=141.10  Aligned_cols=252  Identities=14%  Similarity=0.132  Sum_probs=193.0

Q ss_pred             CCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           19 NVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      ..|.|-.+|..  .....+.-...|.++.|-...+++|++. ...++||| ..|..++.++.| ..|..+.|.|..  -+
T Consensus       149 rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH--fL  223 (545)
T KOG1272|consen  149 RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH--FL  223 (545)
T ss_pred             CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-Cchhhhcccchh--he
Confidence            34555555543  3333343378899999999888999887 67899999 458888888865 578999999988  68


Q ss_pred             EEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEe
Q 016457           97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV  176 (389)
Q Consensus        97 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  176 (389)
                      |++++..|.++--|+.+|+.+..+....+.+..++-+|.+..+-+|...|+|.+|.....+++..+. .|.++|.+|++.
T Consensus       224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~  302 (545)
T KOG1272|consen  224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVD  302 (545)
T ss_pred             eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEEC
Confidence            8899999999999999999999999888999999999999888889999999999999999988887 899999999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-CCC--ceeEEe
Q 016457          177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-KDG--QNVASF  253 (389)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~--~~~~~~  253 (389)
                      ++|. +++|.+.|..++|||+++.    ..+..... ..+...++++ ..+  +++.+....+.||.- ..+  .....+
T Consensus       303 ~~G~-YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~S-qkg--lLA~~~G~~v~iw~d~~~~s~~~~~pY  373 (545)
T KOG1272|consen  303 RGGR-YMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLS-QKG--LLALSYGDHVQIWKDALKGSGHGETPY  373 (545)
T ss_pred             CCCc-EEeecccccceeEeeeccc----cccceeec-CCCccccccc-ccc--ceeeecCCeeeeehhhhcCCCCCCcch
Confidence            9995 9999999999999999943    23333333 4567788887 333  555556668899952 221  122222


Q ss_pred             ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      -.++          ....|.++.|.|-.+  +|-.|-..|.-.+
T Consensus       374 m~H~----------~~~~V~~l~FcP~ED--vLGIGH~~G~tsi  405 (545)
T KOG1272|consen  374 MNHR----------CGGPVEDLRFCPYED--VLGIGHAGGITSI  405 (545)
T ss_pred             hhhc----------cCcccccceeccHHH--eeeccccCCceeE
Confidence            2222          336888999999776  6666655554333

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.2e-15  Score=119.42  Aligned_cols=237  Identities=15%  Similarity=0.182  Sum_probs=165.6

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC--CeEEEEEeCCCCeEE-EeecC------CeEEEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLL-AAGCG------SQIQFWD  152 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d------~~i~iwd  152 (389)
                      ...+++|+.|.  ..++.|..+| .+||+.+--+.....+.+..  .+..+-|  ..++++ ++|.+      +.|.|||
T Consensus         7 ~~lsvs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence            34559999988  5888888777 89999875333222222222  2333333  234444 44432      5899999


Q ss_pred             CcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEE
Q 016457          153 WRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHL  230 (389)
Q Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l  230 (389)
                      =...+++.++.  ...+|.++.+.++   .|++.- .+.|++|......   +.+..+...  +....+++-. .+..+|
T Consensus        82 D~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~-~~k~~L  151 (346)
T KOG2111|consen   82 DLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPT-SNKSLL  151 (346)
T ss_pred             cccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCCh---hheeeeecccCCCceEeecCC-CCceEE
Confidence            66677888886  7899999999986   455554 6789999988432   223322221  2233333322 222334


Q ss_pred             EE-EecCCcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce-EEEEEeccCCcc
Q 016457          231 WC-LTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT-VGYFPVNYGGAA  306 (389)
Q Consensus       231 ~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~-i~i~~~~~~~~~  306 (389)
                      +. |-.-|.|+|-|+...+.  ...+..            |...|.+++.+.+|.  .+|++|..|+ |+|||..++.. 
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~A------------H~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~-  216 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINA------------HDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTL-  216 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEc------------ccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcE-
Confidence            33 33458999999876554  345555            779999999999999  8899999986 79999999877 


Q ss_pred             ccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          307 TIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       307 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                           +.++.+|-. ..|.++         +|||++.+|+.+|+-|+|.|+.+.+..
T Consensus       217 -----l~E~RRG~d~A~iy~i---------aFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  217 -----LQELRRGVDRADIYCI---------AFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             -----eeeeecCCchheEEEE---------EeCCCccEEEEEcCCCeEEEEEeecCC
Confidence                 788876654 689999         999999999999999999999999863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.3e-14  Score=117.04  Aligned_cols=227  Identities=12%  Similarity=0.126  Sum_probs=156.7

Q ss_pred             ccccCCCCeEEEEecC-ceeeeeec--CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc----ee----------eee
Q 016457           14 SQSCDNVNSIKRFGLK-NSIQTNFG--DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG----QY----------SGE   75 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~-~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~----~~----------~~~   75 (389)
                      .|.+..|..|++|+.. +....++.  ...|+|++|-|-+ ..|++|+.. -|.||....-    ..          +..
T Consensus       113 fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhhee
Confidence            4567889999999976 34444555  7789999999955 678888854 5999976421    11          122


Q ss_pred             ecCCCCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457           76 CKGHSSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  154 (389)
                      ..+| .+|+++.|++++  ..+++++. |..|.|||+.++..+.......+.++-+.|+|++..++++..|+..++|...
T Consensus       192 ~pgh-~pVtsmqwn~dg--t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDG--TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             CCCC-ceeeEEEEcCCC--CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            3445 689999999999  68888774 5689999999988776654456889999999999999999999999999654


Q ss_pred             C-CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc------c---cee-----ee----ccCC
Q 016457          155 N-KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD------L---LES-----VI----NVGT  215 (389)
Q Consensus       155 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~---~~~-----~~----~~~~  215 (389)
                      . .....-..  ..+.|..-.|+|.|+.+|++.+..-.++-...........      .   +..     ..    -..+
T Consensus       269 q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg  346 (445)
T KOG2139|consen  269 QSWTKERWIL--GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG  346 (445)
T ss_pred             ccceecceec--cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence            3 33322222  3458999999999986666666554444333321110000      0   000     00    1135


Q ss_pred             ceeeEEEecCCCcEEEEEecCC--------cEEEEEcCCC
Q 016457          216 SVGKVGFFGETNKHLWCLTHIE--------TLSIWDWKDG  247 (389)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~  247 (389)
                      .+.+++|. +.|.+|++.-..+        .|.+||.+..
T Consensus       347 eaq~lawD-psGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  347 EAQCLAWD-PSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             ccceeeEC-CCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            77899999 7888998876554        3667776643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=4.1e-16  Score=126.79  Aligned_cols=250  Identities=14%  Similarity=0.160  Sum_probs=186.5

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE------EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV------TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD  152 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  152 (389)
                      ....|..++|..++..+.+...+.|..+..+.+........+      .....+|..++..  +..|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            446788899987776456666657777888887766554433      3346778777774  67888888899999999


Q ss_pred             CcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEeCC--CcEEEEecCCCCCCCc---cceeeec--cCCceeeEE
Q 016457          153 WRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSASVD--GLICTFDTGGDINDDD---LLESVIN--VGTSVGKVG  221 (389)
Q Consensus       153 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~---~~~~~~~--~~~~i~~~~  221 (389)
                      .+.+.    ++..+.  ....+..|.-++..++++++|+..  ..+.+||+....+...   ......+  .+-+++++.
T Consensus       132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            88442    334443  346678888888888788889999  8899999995421100   0000111  223567888


Q ss_pred             EecCC-CcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          222 FFGET-NKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       222 ~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      |.+++ ...|++++.-+.+++||.+.+ +++..|..            .+.+++++...|.++  +|++|..-|.+..||
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTGLTPSGN--FIYTGNTKGQLAKFD  275 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEecc------------ccCcceeeeecCCCc--EEEEecccchhheec
Confidence            88431 568999999999999999876 46666665            347899999999999  889999999999999


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +..++.      +.....+-.+.|+++         ..+|.+++|+++|.|..|||+|++..
T Consensus       276 ~r~~kl------~g~~~kg~tGsirsi---------h~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  276 LRGGKL------LGCGLKGITGSIRSI---------HCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ccCcee------eccccCCccCCcceE---------EEcCCCceEEeeccceeEEEeecccc
Confidence            999876      343234677889999         78899999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.2e-15  Score=124.09  Aligned_cols=244  Identities=11%  Similarity=0.169  Sum_probs=187.5

Q ss_pred             CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCceeeee------ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTGQYSGE------CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ...|..++|.-++  ..|...+.+..+..+.+........      ....+.+|..++.. ++   .|++|-.+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEEE
Confidence            5678888887665  3444443566777777665544433      23356677777775 45   79999999999999


Q ss_pred             EccCC----eEEEEEEcCCCCeEEEEEeCCCCeEEE-eecC--CeEEEEECcCCceeeeeeec--------ccCCeeEEE
Q 016457          110 DTRSF----HEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCG--SQIQFWDWRNKKQVACLEES--------HVEDVTQVH  174 (389)
Q Consensus       110 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~  174 (389)
                      ....+    .++..+..+ ..+..+.-++..+.+++ ||..  ..+++||+.+.+++.+-+..        -.-.++.+.
T Consensus       131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            98843    344455554 67888888888888887 5556  78999999988666554311        122467788


Q ss_pred             EecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457          175 FVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS  252 (389)
Q Consensus       175 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  252 (389)
                      |.+.  . +.|++++.-+.+++||.+.+   ..++..+.-.+.++.++... +++++++++..-+.+..||++.++....
T Consensus       210 Fl~g~~~-~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~E~~is~~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  210 FLEGSPN-YKFATITRYHQVRLYDTRHQ---RRPVAQFDFLENPISSTGLT-PSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ecCCCCC-ceEEEEecceeEEEecCccc---CcceeEeccccCcceeeeec-CCCcEEEEecccchhheecccCceeecc
Confidence            8876  4 58999999999999999954   46777777788999999999 7889999999999999999999988776


Q ss_pred             -eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          253 -FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       +.+            ..+.+.++..+|..+  +|++++-|..|+|+|+.+.++
T Consensus       285 ~~kg------------~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  285 GLKG------------ITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccCC------------ccCCcceEEEcCCCc--eEEeeccceeEEEeecccchh
Confidence             555            448899999999988  999999999999999999654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.7e-15  Score=118.39  Aligned_cols=295  Identities=11%  Similarity=0.119  Sum_probs=184.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC--
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--  114 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~--  114 (389)
                      .-.+..++|++.-..+|++..|..|++|+-.. +....++. ....|+|++|-|.+. ..|+.|+..| |.||.....  
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-selavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-ceeeeeecce-eEEEEcCcccc
Confidence            45678899999888899999999999999665 44444442 456799999999886 5788887766 999986521  


Q ss_pred             --eE----------EEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457          115 --HE----------VWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       115 --~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                        ..          +..-.+| .+|+++.|++++..+++++. |..|.|||..++..+.-.. ...+.++-+.|+|++. 
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd-  251 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD-  251 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-
Confidence              11          1122233 78999999999988888887 7899999999887665543 3456789999999996 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCCcEEEEEcCCCc------------
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQ------------  248 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~------------  248 (389)
                      +|++++-|+..++|+...   .....+... ..+.|...+|+ +.|.+| ++.+..-.  +|.+.-..            
T Consensus       252 ~lfaAt~davfrlw~e~q---~wt~erw~l-gsgrvqtacWs-pcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k  324 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQ---SWTKERWIL-GSGRVQTACWS-PCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIK  324 (445)
T ss_pred             EEEEecccceeeeehhcc---cceecceec-cCCceeeeeec-CCCCEEEEEEcCCce--EEEEeecCCCccccCcccce
Confidence            999999999999996652   112222222 34489999999 555554 44444333  44432110            


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--------ceEEEEEeccCCccccCCCeEEEecccc
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--------GTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                      .+..+.+........-..--.+.+.+++|.|.|.  ||++.-..        +.|.+||......      +..++-|- 
T Consensus       325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe--yLav~fKg~~~v~~~k~~i~~fdtr~sp~------vels~cg~-  395 (445)
T KOG2139|consen  325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE--YLAVIFKGQSFVLLCKLHISRFDTRKSPP------VELSYCGM-  395 (445)
T ss_pred             eeeeeccchhhhhhcCcccccCccceeeECCCCC--EEEEEEcCCchhhhhhhhhhhhcccccCc------eEEEeccc-
Confidence            0000001000000000000236788999999999  66654333        2355565543221      11111000 


Q ss_pred             eeeeeccCCCcccCCCCC---CCceeEEEecCCCeEEEEeccC
Q 016457          321 AVVRSVLPMPSVQGRPAQ---SHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s---~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                        +..  +.+..+  +|+   .++.+|..|=..|.+.-|.+.-
T Consensus       396 --i~g--e~P~~I--sF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  396 --IGG--EYPAYI--SFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             --ccC--CCCceE--EeeecccCCcEEEEEeccCceEeeeeEE
Confidence              000  112222  444   3566676666678888887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.6e-14  Score=128.70  Aligned_cols=229  Identities=10%  Similarity=0.014  Sum_probs=149.4

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe---cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS---SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.++|.+.... ..+..+...+...+|+|++  +.|+..+   .+..|.+|++.+++..... .....+...+|+|++.
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG--~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDG--SKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCC--CEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCC
Confidence            688999875443 3344466789999999999  6777543   2457999999887643322 2234455789999999


Q ss_pred             eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCc--EEEEecCCCCCCCccceeee
Q 016457          138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGL--ICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .|+.... +|  .|++||+.+++... +. .+...+....|+|+++ .|+..+. ++.  |+++|+.++.     ...+.
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt  327 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA-----PQRIT  327 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC-----eEEee
Confidence            8887643 44  59999998876544 33 3445678899999996 6766654 344  4455665432     22333


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ..........|+ ++++.++..+.+   ..|.+||+.+++.. .+...             .......|+|||+  +|+.
T Consensus       328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-------------~~~~~p~~SpDG~--~i~~  390 (429)
T PRK03629        328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-------------FLDETPSIAPNGT--MVIY  390 (429)
T ss_pred             cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-------------CCCCCceECCCCC--EEEE
Confidence            334445678898 677777665543   36888999877543 33221             1224578999999  6666


Q ss_pred             ecCCc---eEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          289 GTGAG---TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       289 g~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      .+.++   .++++++.....       ..+. +|.+.+...
T Consensus       391 ~s~~~~~~~l~~~~~~G~~~-------~~l~-~~~~~~~~p  423 (429)
T PRK03629        391 SSSQGMGSVLNLVSTDGRFK-------ARLP-ATDGQVKFP  423 (429)
T ss_pred             EEcCCCceEEEEEECCCCCe-------EECc-cCCCCcCCc
Confidence            66554   367777754433       5554 677777777

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.1e-15  Score=127.53  Aligned_cols=265  Identities=16%  Similarity=0.176  Sum_probs=191.9

Q ss_pred             ccccCCCCeEEEEecCceeeeee-c--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457           14 SQSCDNVNSIKRFGLKNSIQTNF-G--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~~~~~~~-~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .|++.....|++||+.+....+. +  .+.|.-.-.+.|-..++.-..|.+|.+...- |... .++ -...-.+++++.
T Consensus        67 lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy-~~R-IP~~GRDm~y~~  143 (703)
T KOG2321|consen   67 LATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY-RTR-IPKFGRDMKYHK  143 (703)
T ss_pred             EEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee-eee-cCcCCccccccC
Confidence            56777788899999987655554 3  4445555566676777777778888776532 3211 111 112234566654


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-----c
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-----S  165 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~  165 (389)
                      ... ++++.| ....|.-+++..|+.+..|....+.++++..++..+.|++|+.+|.|.+||.+....+.++..     .
T Consensus       144 ~sc-Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s  221 (703)
T KOG2321|consen  144 PSC-DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS  221 (703)
T ss_pred             CCc-cEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence            442 344444 445688889999999999998889999999998888888888899999999998877766651     1


Q ss_pred             ccC-----CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          166 HVE-----DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       166 ~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      |.+     .|+++.|+.+| -.+++|+.+|.+.|||+++..   ..+..-.....+|..+.|.+.+++--++......++
T Consensus       222 ~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~---pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k  297 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK---PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK  297 (703)
T ss_pred             CccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---ceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence            222     39999999998 599999999999999999643   223333344568899999855444455555667999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |||-.+|+....+..             ...+..+|+-|++.  +++++-.++.+..|=+..
T Consensus       298 iWd~~~Gk~~asiEp-------------t~~lND~C~~p~sG--m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  298 IWDECTGKPMASIEP-------------TSDLNDFCFVPGSG--MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hcccccCCceeeccc-------------cCCcCceeeecCCc--eEEEecCCCcceeEEccc
Confidence            999999999888774             35589999999887  788888888777775554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.2e-14  Score=127.72  Aligned_cols=233  Identities=10%  Similarity=-0.031  Sum_probs=154.4

Q ss_pred             CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+.   +..|.+|++.+++..... .....+..++|+|++  
T Consensus       178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG--  254 (429)
T PRK03629        178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG--  254 (429)
T ss_pred             ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC--
Confidence            34788888753 2333333 678999999999999887643   457999999887543221 222334568999999  


Q ss_pred             CEEEE-EecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CC--eEEEEECcCCceeeeeeecccC
Q 016457           95 HVLHS-CSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        95 ~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +.|+. .+.+|  .|.+||+.+++.... ..+...+....|+|+++.++.++. ++  .|.++|+.+++. ..+. ....
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt-~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT-WEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee-cCCC
Confidence            56664 34455  588899988766543 333457788999999998887776 34  455557666543 3343 3444


Q ss_pred             CeeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc---EEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET---LSIW  242 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---i~i~  242 (389)
                      ......|+|+|+ .|+..+.+   ..|.+||+.++.     ...+.. ........|+ +++..|+.++.++.   +.++
T Consensus       332 ~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~-~~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        332 QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG-----VQVLTD-TFLDETPSIA-PNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             CccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC-----eEEeCC-CCCCCCceEC-CCCCEEEEEEcCCCceEEEEE
Confidence            566789999996 66665443   358889988653     222221 1223467898 78888888887763   6677


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      ++ ++.....+..            |...+...+|+|
T Consensus       404 ~~-~G~~~~~l~~------------~~~~~~~p~Wsp  427 (429)
T PRK03629        404 ST-DGRFKARLPA------------TDGQVKFPAWSP  427 (429)
T ss_pred             EC-CCCCeEECcc------------CCCCcCCcccCC
Confidence            76 4555566654            446677888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=6.6e-15  Score=125.62  Aligned_cols=285  Identities=13%  Similarity=0.073  Sum_probs=201.1

Q ss_pred             CcceEEEeecCCCCeE-EEEecCCeEEEEeCCCceeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKNDWSLM-AVSLSTNVVKLYSPVTGQYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      ...-+.|..+|||+++ |+|..--.|++||+.+..+  .|..|.  ..|.-.-.+.+-  ..++--..|.+|.+..-- |
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~--SK~v~L~~DR~IefHak~-G  125 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDY--SKSVFLQNDRTIEFHAKY-G  125 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccch--hhheEeecCceeeehhhc-C
Confidence            7778899999999875 5666688999999875433  333333  334433444333  345555667777765422 2


Q ss_pred             eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      .. ..++. ...-..++++...--|++++....|+=++++.|.-+..+. .....++++..++... +|++|+.+|.|-.
T Consensus       126 ~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~VEf  201 (703)
T KOG2321|consen  126 RH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVVEF  201 (703)
T ss_pred             ee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceEEE
Confidence            21 12222 2344567777666778888887899999999999988887 5668899999999986 9999999999999


Q ss_pred             EecCCCCCCC--ccceeeeccC-----CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          195 FDTGGDINDD--DLLESVINVG-----TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       195 ~d~~~~~~~~--~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      ||.+......  .....+..+.     ..|+++.|. ++|-.+++|+.+|.+.|||++..+++..-...           
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~-----------  269 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG-----------  269 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccC-----------
Confidence            9999542110  0011111222     348999998 77999999999999999999988877554321           


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ..-+|..+.|.+.+++--|++. ....++|||-.+++.      ...+.  .+..++.+         ++-|++-++++|
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~------~asiE--pt~~lND~---------C~~p~sGm~f~A  331 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP------MASIE--PTSDLNDF---------CFVPGSGMFFTA  331 (703)
T ss_pred             CccceeeecccccCCCceEEec-chHHhhhcccccCCc------eeecc--ccCCcCce---------eeecCCceEEEe
Confidence            4467889999877443344554 557899999999876      44443  34457788         677777778999


Q ss_pred             cCCCeEEEEeccCC
Q 016457          348 GEDGRLCCWLSDDS  361 (389)
Q Consensus       348 ~~dg~v~iW~~~~~  361 (389)
                      -+++.+..|=+...
T Consensus       332 ne~~~m~~yyiP~L  345 (703)
T KOG2321|consen  332 NESSKMHTYYIPSL  345 (703)
T ss_pred             cCCCcceeEEcccc
Confidence            99998888877755

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=4.6e-13  Score=115.82  Aligned_cols=278  Identities=14%  Similarity=0.119  Sum_probs=173.3

Q ss_pred             CeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           51 SLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        51 ~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      ++++ +-..++.|.+.|..+.+.+..+......-..+.|+|++  +++++++.||.|.++|+.+++.+.+++.. ....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence            3444 44558999999999999999998655444457899999  78999999999999999999999999875 56788


Q ss_pred             EEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeec------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC
Q 016457          130 FSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEES------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN  202 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (389)
                      +++++++++++++.. .+.+.++|.++.++++.+..+      ....+..|..+|..+.++++.-+.+.|.+.|....  
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--  160 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--  160 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--
Confidence            999999999998876 899999999999999887621      23457788888888634444444588888888743  


Q ss_pred             CCccceeeeccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          203 DDDLLESVINVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                       ..................|. ++++++++ ...++.|.++|..+++.+..+...+..        |......+ .+|..
T Consensus       161 -~~~~~~~i~~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p--------~~~~~~~~-php~~  229 (369)
T PF02239_consen  161 -KNLKVTTIKVGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP--------HPGPGANF-PHPGF  229 (369)
T ss_dssp             -SCEEEEEEE--TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB--------EETTEEEE-EETTT
T ss_pred             -cccceeeecccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccc--------cccccccc-cCCCc
Confidence             12233444456677888998 67776655 456779999999999887776543321        22333322 23322


Q ss_pred             CeEEEEEecCCce--------EEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe----cC
Q 016457          282 ENLWVIGGTGAGT--------VGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG----GE  349 (389)
Q Consensus       282 ~~~~l~~g~~dg~--------i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~----~~  349 (389)
                      ..++...+.....        +.+|+....+.      +.++. .....          +.+..+|++++|+..    ..
T Consensus       230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv------v~~I~-~~G~g----------lFi~thP~s~~vwvd~~~~~~  292 (369)
T PF02239_consen  230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV------VKTIP-TQGGG----------LFIKTHPDSRYVWVDTFLNPD  292 (369)
T ss_dssp             EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE------EEEEE--SSSS------------EE--TT-SEEEEE-TT-SS
T ss_pred             ceEEeeccccceecccccCCccccchhhcCeE------EEEEE-CCCCc----------ceeecCCCCccEEeeccCCCC
Confidence            2112122222222        23333333322      44444 22222          333779999999988    45


Q ss_pred             CCeEEEEeccCC
Q 016457          350 DGRLCCWLSDDS  361 (389)
Q Consensus       350 dg~v~iW~~~~~  361 (389)
                      .+.|.++|.++.
T Consensus       293 ~~~v~viD~~tl  304 (369)
T PF02239_consen  293 ADTVQVIDKKTL  304 (369)
T ss_dssp             HT-EEEEECCGT
T ss_pred             CceEEEEECcCc
Confidence            689999999987

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.1e-14  Score=127.44  Aligned_cols=233  Identities=14%  Similarity=0.036  Sum_probs=152.5

Q ss_pred             CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...|.+||... ..+.+.. ...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +..+.+...+.+|+|++  
T Consensus       183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG--  259 (433)
T PRK04922        183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG--  259 (433)
T ss_pred             eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC--
Confidence            34688998753 3444444 7789999999999999987643   479999998776533 23334455678999999  


Q ss_pred             CEE-EEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CC--eEEEEECcCCceeeeeeecccC
Q 016457           95 HVL-HSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        95 ~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +.| ++.+.+|  .|.+||+.+++.. .+..+.......+|+|++..++.++. +|  .|.++|+.+++.. .+. .+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt-~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLT-FQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eee-cCCC
Confidence            455 4556555  5999999887654 44444455678899999998888765 44  4777777666533 332 2334


Q ss_pred             CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIW  242 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~  242 (389)
                      .....+|+|+|+ .|+..+.++   .|.+||+.++.     ...+. +........|+ +++++++..+.+   +.|.++
T Consensus       337 ~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~-----~~~Lt-~~~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        337 YNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS-----VRTLT-PGSLDESPSFA-PNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             CccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC-----eEECC-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEE
Confidence            455789999996 666654333   59999997553     12222 22244567898 677776665553   367788


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      ++. +.....+..            +...+...+|+|
T Consensus       409 ~~~-g~~~~~l~~------------~~g~~~~p~wsp  432 (433)
T PRK04922        409 STD-GRVRQRLVS------------ADGEVREPAWSP  432 (433)
T ss_pred             ECC-CCceEEccc------------CCCCCCCCccCC
Confidence            875 444444443            224456666765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=2.6e-15  Score=127.05  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=134.6

Q ss_pred             CCCCeEEEEecCCeEEEEeCCCceeeeeec----CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------
Q 016457           48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECK----GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------  114 (389)
Q Consensus        48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------  114 (389)
                      |.+--|.+|-..|.|.+.|....+..+.+.    -.+..|+++.|.|.+. ..++.+-.+|.+.++|....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCccc
Confidence            456678888889999999976533322222    1347899999999775 67888889999999975311         


Q ss_pred             -------------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457          115 -------------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF  175 (389)
Q Consensus       115 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  175 (389)
                                         .++..+......|...+|+|++.+|++.+.||.++|||..+.+.+..++ .--+...|++|
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcW  340 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCW  340 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEE
Confidence                               1122222235688899999999999999999999999999888776665 45577999999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG  224 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (389)
                      +|||+ +|++|++|-.|.||.+.    +...+..-.+|.++|..|+|.|
T Consensus       341 SPDGK-yIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  341 SPDGK-YIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCcc-EEEecCCcceEEEEEec----cceEEEeccccccceeeEeecc
Confidence            99997 99999999999999998    4567777889999999999983

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.68  E-value=1e-15  Score=122.50  Aligned_cols=269  Identities=11%  Similarity=0.137  Sum_probs=183.6

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----EEEEEEcC------------CCCeEEEEEeCCCC--eE
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----EVWSVTAG------------SQEIFCFSFGGSTD--YL  139 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l  139 (389)
                      ..+-|.+|.|...|  ++|++|..+|.|.++.-....     ....++.|            ...|..+.|.++++  .+
T Consensus        24 eadiis~vef~~~G--e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYG--ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeeccc--ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            35678999999999  799999999999999754322     23345444            24678889987654  57


Q ss_pred             EEeecCCeEEEEECcCCce-----------------------------------eeeeeecccCCeeEEEEecCCCCeEE
Q 016457          140 LAAGCGSQIQFWDWRNKKQ-----------------------------------VACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       140 ~~~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      +.++.|.+|++|-++....                                   .+.+..+|.--|++|.++.+++ .++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~l  180 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFL  180 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEe
Confidence            8888899999998753211                                   1112246777899999999986 666


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeec-----cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee----EEeec
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVIN-----VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV----ASFEN  255 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~  255 (389)
                      ++ .|=.|.+|++.-.... -.+..+..     ....|++..|+|.....++-++..|+|++-|++.....    +.+..
T Consensus       181 SA-DdLRINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             ec-cceeeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            65 4888999999832211 11122222     23468899999888889999999999999999854221    11221


Q ss_pred             ccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc---eeeeecc---CC
Q 016457          256 ARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT---AVVRSVL---PM  329 (389)
Q Consensus       256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~---~~  329 (389)
                      .......++-.+-...|.++.|++.|+  |+++-+. -+|++||+.....     |+...+ .|.   ..+.+++   ..
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGr--yilsRDy-ltvk~wD~nme~~-----pv~t~~-vh~~lr~kLc~lYEnD~I  329 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGR--YILSRDY-LTVKLWDLNMEAK-----PVETYP-VHEYLRSKLCSLYENDAI  329 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCc--EEEEecc-ceeEEEeccccCC-----cceEEe-ehHhHHHHHHHHhhccch
Confidence            111111111112335788999999999  8887643 5799999965432     345554 565   3444444   23


Q ss_pred             CcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          330 PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       330 ~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      -..+.++|+.++.+++||+....++++++..+
T Consensus       330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            34556799999999999999999999997766

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.9e-14  Score=127.55  Aligned_cols=215  Identities=13%  Similarity=0.087  Sum_probs=141.4

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                      ..|.+||.. +.....+..+...+.+.+|+|++  +.|+..+.+   ..|.+||+.+++... +........+.+|+|++
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg--~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDG--KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCC--CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence            368999986 44444555677789999999999  677776633   469999998776543 33334455688999999


Q ss_pred             CeEEEee-cCC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCc--EEEEecCCCCCCCccceee
Q 016457          137 DYLLAAG-CGS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGL--ICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       137 ~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~  210 (389)
                      +.++.+. .+|  .|++||+.+++.. .+. .+.......+|+|+++ .|+.++ .+|.  |+++|+.++.     ...+
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~-----~~~l  331 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS-----AERL  331 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC-----eEEe
Confidence            9886543 344  6999999887643 444 3555567889999996 666655 4444  6666766432     2222


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ..........+|+ ++++.++..+.++   .|.+||+.+++.. .+..             ........|+|+|+  +|+
T Consensus       332 t~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-------------~~~~~~p~~spdG~--~i~  394 (433)
T PRK04922        332 TFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-------------GSLDESPSFAPNGS--MVL  394 (433)
T ss_pred             ecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-------------CCCCCCceECCCCC--EEE
Confidence            2233345568999 6777777665443   6999999877644 3322             12334578999999  444


Q ss_pred             EecC---CceEEEEEeccC
Q 016457          288 GGTG---AGTVGYFPVNYG  303 (389)
Q Consensus       288 ~g~~---dg~i~i~~~~~~  303 (389)
                      ..+.   .+.|++++...+
T Consensus       395 ~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        395 YATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEecCCceEEEEEECCCC
Confidence            4333   245777777543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.68  E-value=1e-14  Score=116.87  Aligned_cols=226  Identities=12%  Similarity=0.149  Sum_probs=168.1

Q ss_pred             CCCccccCCCCeEEEEecC---ceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC----CceeeeeecCCCC
Q 016457           11 QPKSQSCDNVNSIKRFGLK---NSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----TGQYSGECKGHSS   81 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~---~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----~~~~~~~~~~~~~   81 (389)
                      .|..-+.+.|.++|+|--.   +....+..  ..+++++++.++...|++|..+|++.-+.+.    .....+.+..|..
T Consensus        36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~  115 (404)
T KOG1409|consen   36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA  115 (404)
T ss_pred             CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence            4566788999999999643   44455555  8899999999999999999999999988653    3455667778999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc--CCcee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR--NKKQV  159 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~  159 (389)
                      .|..+.|+-..  +.+++.+.|..+.---.+.+..+..+... ...+++.+.-.  ..+++-..|.|.+-.+.  .-.++
T Consensus       116 ~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i  190 (404)
T KOG1409|consen  116 RVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI  190 (404)
T ss_pred             ceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceE
Confidence            99999998776  79999999987765445555544333221 22222222211  44444445666655443  34567


Q ss_pred             eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      .++. +|...++++.|.|... ++.+|..|..+.+||+-...   .......+|...|..+... +--..+.+++.||.|
T Consensus       191 ~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  191 TTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK---GTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGI  264 (404)
T ss_pred             EEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc---ceeeeeccchhhhhhhhhh-hhheeeeeccCCCeE
Confidence            7887 9999999999999986 99999999999999998432   4456667788888888877 556689999999999


Q ss_pred             EEEEcCCC
Q 016457          240 SIWDWKDG  247 (389)
Q Consensus       240 ~i~d~~~~  247 (389)
                      .+|+++..
T Consensus       265 ~~w~mn~~  272 (404)
T KOG1409|consen  265 VVWNMNVK  272 (404)
T ss_pred             EEEeccce
Confidence            99998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.68  E-value=2.5e-14  Score=112.31  Aligned_cols=272  Identities=12%  Similarity=0.004  Sum_probs=188.2

Q ss_pred             CCeEEEEeCCCceeee--ee-cCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC------CCC
Q 016457           59 TNVVKLYSPVTGQYSG--EC-KGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG------SQE  126 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~--~~-~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~  126 (389)
                      .|.+.+|++...+...  .+ ..-+..+..+.|..   ++. -.++-+..+|.|.++..........+++-      ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            4678899887665443  11 12345677788864   231 25677788999999987655444444432      123


Q ss_pred             eEEEEEeCCCCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC
Q 016457          127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD  204 (389)
Q Consensus       127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (389)
                      ..++.|++.+..++++-.+|.+.+-+......  ++..+ .|..+.....|+...++++.+|+.|+.+..||+|...   
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence            45788998888999998899999766554433  44676 8999999999999888999999999999999999321   


Q ss_pred             ccc-eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457          205 DLL-ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       205 ~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (389)
                      ..+ .....|...|.++.-+|+.+.++++|+.|..|++||.++ ++++..-.             -.+.|+.+.++|.-.
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------------v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------------VGGGVWRIKHHPEIF  266 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------------cccceEEEEecchhh
Confidence            222 235568889999999999999999999999999999984 55554433             237899999998755


Q ss_pred             eEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec-CCCeEE-EEeccC
Q 016457          283 NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLC-CWLSDD  360 (389)
Q Consensus       283 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~-iW~~~~  360 (389)
                      ..+|+++-.+| .+|-+...+... +.. .......|..-+..-         .|.....+|+|++ .|..++ +|-...
T Consensus       267 ~~lL~~CMh~G-~ki~~~~~~~~e-~~~-~~~s~~~hdSl~YG~---------DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  267 HRLLAACMHNG-AKILDSSDKVLE-FQI-VLPSDKIHDSLCYGG---------DWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             hHHHHHHHhcC-ceEEEecccccc-hhe-eeeccccccceeecc---------ccccccceeeeeeccccceeeeeeecc
Confidence            43566665665 677777655431 100 122233566555555         6655556788875 677755 786443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.7e-13  Score=122.86  Aligned_cols=217  Identities=11%  Similarity=0.015  Sum_probs=145.2

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.++|.+ +.....+..|...+...+|+|++  +.|+..+.   +..|.+||+.+++.. .+..+...+...+|+|+++
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG--~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNR--QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCC--CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence            78899975 44455566788899999999999  67776653   468999999887654 3444556778899999999


Q ss_pred             eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeee
Q 016457          138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .++.+.. ++  .|.+||+.+++. ..+. .+........|+|+++ .|+..+. +|  .|+++|+.++.     ...+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-----~~~lt  330 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTT-TRLT-DSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-----PRRIS  330 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCce-EEcc-CCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC-----eEEee
Confidence            8875543 44  588889887755 3454 4555677899999996 6666553 33  58888877432     23333


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      .....+....|+ ++++.|+..+.+   ..|.+||+..+. ...+..             ...+....|+|||+.+++ +
T Consensus       331 ~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-------------~~~~~~p~~spDG~~i~~-~  394 (435)
T PRK05137        331 FGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-------------GFLVEGPTWAPNGRVIMF-F  394 (435)
T ss_pred             cCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-------------CCCCCCCeECCCCCEEEE-E
Confidence            334456678899 677777766543   368888875543 333321             123567889999984332 2


Q ss_pred             ecCC-----ceEEEEEeccCCc
Q 016457          289 GTGA-----GTVGYFPVNYGGA  305 (389)
Q Consensus       289 g~~d-----g~i~i~~~~~~~~  305 (389)
                      ....     ..|+++++..+..
T Consensus       395 ~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        395 RQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EccCCCCCcceEEEEECCCCce
Confidence            2222     3577888766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.6e-14  Score=124.49  Aligned_cols=232  Identities=14%  Similarity=0.092  Sum_probs=142.7

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                      ..|.++|.. |.....+..+...+.+.+|+|++  +.|+..+.+   ..|.+||+.+++... +......+.+.+|+|++
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG--~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDG--TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCC--CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence            367777764 54445555677889999999999  677766532   359999999887643 33334566789999999


Q ss_pred             CeEEEe-ecCCeEEEE--ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceeeec
Q 016457          137 DYLLAA-GCGSQIQFW--DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       137 ~~l~~~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      +.++.+ +.++...+|  |+..+. ...+. .+........|+|+|+ .|+..+ .++...+|.+....   .....+..
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~---g~~~~lt~  325 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASG---GAAQRVTF  325 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCC---CceEEEec
Confidence            988764 457765555  444443 44554 3455567789999997 665544 35666666554211   11222222


Q ss_pred             cCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .........|+ +++++++..+.++   .|.+||+.+++... +...             .......|+|+|+.  |+..
T Consensus       326 ~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-------------~~~~~p~~spdg~~--l~~~  388 (427)
T PRK02889        326 TGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-------------TRDESPSFAPNGRY--ILYA  388 (427)
T ss_pred             CCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-------------CCccCceECCCCCE--EEEE
Confidence            22334467898 6788887766554   69999998776432 3211             22356789999994  4443


Q ss_pred             c-CCc--eEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          290 T-GAG--TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       290 ~-~dg--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      + ..|  .+++.++. +..      ...+. .+.+.+...
T Consensus       389 ~~~~g~~~l~~~~~~-g~~------~~~l~-~~~g~~~~p  420 (427)
T PRK02889        389 TQQGGRSVLAAVSSD-GRI------KQRLS-VQGGDVREP  420 (427)
T ss_pred             EecCCCEEEEEEECC-CCc------eEEee-cCCCCCCCC
Confidence            3 333  35555553 222      23343 455555555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.3e-13  Score=123.54  Aligned_cols=217  Identities=12%  Similarity=0.042  Sum_probs=146.6

Q ss_pred             CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|+++ 
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~-  258 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR-  258 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence            34788888753 3344444 778999999999999888764   468999999887653 3444566778899999994 


Q ss_pred             CEEEEEecCCe--EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCC
Q 016457           95 HVLHSCSSDGT--IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        95 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      .++++.+.++.  |.+||+.+++.. .+..+........|+|++..++.++. +  ..|+++|+..++. ..+. .+...
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt-~~~~~  335 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRIS-FGGGR  335 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEee-cCCCc
Confidence            33456666665  777788776553 45555556778999999998887764 3  3688889876544 3443 24455


Q ss_pred             eeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC------CcEE
Q 016457          170 VTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI------ETLS  240 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~  240 (389)
                      +....|+|+|+ .|+..+.+   ..|.+||+.++.     ...+ .....+....|+ ++++.|+..+.+      ..|.
T Consensus       336 ~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~-----~~~l-t~~~~~~~p~~s-pDG~~i~~~~~~~~~~~~~~L~  407 (435)
T PRK05137        336 YSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG-----ERIL-TSGFLVEGPTWA-PNGRVIMFFRQTPGSGGAPKLY  407 (435)
T ss_pred             ccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc-----eEec-cCCCCCCCCeEC-CCCCEEEEEEccCCCCCcceEE
Confidence            67789999996 77665543   358888876432     1111 122346778999 677776655442      2577


Q ss_pred             EEEcCCCce
Q 016457          241 IWDWKDGQN  249 (389)
Q Consensus       241 i~d~~~~~~  249 (389)
                      ++|+..+..
T Consensus       408 ~~dl~g~~~  416 (435)
T PRK05137        408 TVDLTGRNE  416 (435)
T ss_pred             EEECCCCce
Confidence            888765443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=1.8e-13  Score=109.31  Aligned_cols=280  Identities=15%  Similarity=0.127  Sum_probs=191.5

Q ss_pred             CcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      -+.|.-+.|.-|..+++++ ..++.|.+|++...+-...+..-..++.+++|+|+|. ..|.+...|-.|.+|.+.+.+.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcc-eEeeeecceeEEEEEEecccee
Confidence            5677788899888665554 5588999999998888888888888999999999996 6788888999999999987655


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeec-C-----------------------------------CeEEEEECcCCceee
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC-G-----------------------------------SQIQFWDWRNKKQVA  160 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----------------------------------~~i~iwd~~~~~~~~  160 (389)
                      .. ++-.+..+..++|+|++++.+..+. |                                   ..+.+||.--.-.+.
T Consensus       127 ~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  127 YL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             EE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            43 3334667788999988877665543 2                                   233444422111222


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--------------------------------------
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--------------------------------------  202 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------------------------  202 (389)
                      .+.  ..-.+..++|+|.++ +|+.|+.|+.+++.+--+.+.                                      
T Consensus       206 aYe--~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~  282 (447)
T KOG4497|consen  206 AYE--RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT  282 (447)
T ss_pred             eee--eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence            222  335688899999986 999999999988765321100                                      


Q ss_pred             --------CC----------------ccceeeeccCCceeeEEEecCCCcEEEEEecC--CcEEEEEcCCCceeEEeecc
Q 016457          203 --------DD----------------DLLESVINVGTSVGKVGFFGETNKHLWCLTHI--ETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       203 --------~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~  256 (389)
                              ..                ++........-.+..++|+ ++..++++-...  +.+-+||++..+....+.  
T Consensus       283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--  359 (447)
T KOG4497|consen  283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--  359 (447)
T ss_pred             ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec-CCceEEeeecCCCCceEEEEechhhhhhhhhh--
Confidence                    00                0000001112245678898 676666665443  478999998776655544  


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCC
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRP  336 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  336 (389)
                                 ...+|....|.|...++.+.+|+  ..+++|.......       ...+ +..-.|..+         .
T Consensus       360 -----------Qk~piraf~WdP~~prL~vctg~--srLY~W~psg~~~-------V~vP-~~GF~i~~l---------~  409 (447)
T KOG4497|consen  360 -----------QKHPIRAFEWDPGRPRLVVCTGK--SRLYFWAPSGPRV-------VGVP-KKGFNIQKL---------Q  409 (447)
T ss_pred             -----------hccceeEEEeCCCCceEEEEcCC--ceEEEEcCCCceE-------EecC-CCCceeeeE---------E
Confidence                       33789999999988876555554  4699998775432       2222 344677778         8


Q ss_pred             CCCCceeEEEecCCCeEEE
Q 016457          337 AQSHGIFGWTGGEDGRLCC  355 (389)
Q Consensus       337 ~s~~~~~l~s~~~dg~v~i  355 (389)
                      |..+|.+|+-.+.|....-
T Consensus       410 W~~~g~~i~l~~kDafc~a  428 (447)
T KOG4497|consen  410 WLQPGEFIVLCGKDAFCVA  428 (447)
T ss_pred             ecCCCcEEEEEcCCceEEE
Confidence            8999999999999975443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.1e-13  Score=123.43  Aligned_cols=233  Identities=12%  Similarity=0.037  Sum_probs=148.0

Q ss_pred             CCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...|.++|... ..+.+.. ...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|++  
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG--  251 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG--  251 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence            34677777643 3333434 6788999999999999887643   469999999886543 33334556789999999  


Q ss_pred             CEEE-EEecCCeEEEEEc--cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEEC--cCCceeeeeeecccC
Q 016457           95 HVLH-SCSSDGTIRAWDT--RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW--RNKKQVACLEESHVE  168 (389)
Q Consensus        95 ~~l~-s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~  168 (389)
                      +.|+ +.+.+|...||.+  ..+. ...+..+........|+|++..++.++. ++...+|.+  .+++. ..+. ....
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-~~g~  328 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT-FTGS  328 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe-cCCC
Confidence            4555 6677887777654  3333 4445545555677899999998887665 455566654  44433 2222 1233


Q ss_pred             CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIW  242 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~  242 (389)
                      ......|+|+|+ .|+..+.++   .|.+||+.++.     ...+. .........|+ ++++.|+..+.++   .+.+.
T Consensus       329 ~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~-----~~~lt-~~~~~~~p~~s-pdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        329 YNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ-----VTALT-DTTRDESPSFA-PNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             CcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC-----eEEcc-CCCCccCceEC-CCCCEEEEEEecCCCEEEEEE
Confidence            345688999996 777666544   59999998653     12222 12234677899 6777766666543   35555


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      ++ ++.....+..            +.+.+...+|+|
T Consensus       401 ~~-~g~~~~~l~~------------~~g~~~~p~wsp  424 (427)
T PRK02889        401 SS-DGRIKQRLSV------------QGGDVREPSWGP  424 (427)
T ss_pred             EC-CCCceEEeec------------CCCCCCCCccCC
Confidence            65 3555544443            235566677776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=3e-14  Score=112.00  Aligned_cols=148  Identities=18%  Similarity=0.310  Sum_probs=110.0

Q ss_pred             EEeecCCCCeEEEEec----------CCeEEEEeCCC-ceeeeeecC-CCCcEEEEEEeCCCCCCEEEE--EecCCeEEE
Q 016457           43 EIVPKNDWSLMAVSLS----------TNVVKLYSPVT-GQYSGECKG-HSSTVNQISFSGPSTPHVLHS--CSSDGTIRA  108 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~----------d~~i~iw~~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~i  108 (389)
                      .+.|+|+|++|++-..          -+...||-++. +.....+.- ..++|.+++|+|++  +.++.  |..++.|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccEE
Confidence            5779999987776544          12355555422 233444432 34579999999999  45543  446789999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ||++ ++.+..+.  ...+..+.|+|+|+.+++++.   .|.|.+||.++.+.+.+..  |. .++.++|+|+|+ +|++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr-~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGR-YLAT  160 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCC-EEEE
Confidence            9996 66666664  467889999999999999885   4779999999888887775  44 478999999997 7777


Q ss_pred             EeC------CCcEEEEecCC
Q 016457          186 ASV------DGLICTFDTGG  199 (389)
Q Consensus       186 ~~~------d~~i~i~d~~~  199 (389)
                      ++.      |+.++||+...
T Consensus       161 a~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEeccceeccccEEEEEecC
Confidence            764      78899999874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.3e-13  Score=117.61  Aligned_cols=281  Identities=14%  Similarity=0.111  Sum_probs=177.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-----ecC-----CeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-----SSD-----GTIR  107 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-----~~d-----g~i~  107 (389)
                      ...++..+++++|+++|.+. +..+.|++..++..+.+....  .+.++.|+|-+  .+|.+=     ..+     -.+.
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g--~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG--NYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccc--cccccccccccccCCCCCCCcee
Confidence            34467888999998888776 778999999888654444422  78999999998  677662     122     3477


Q ss_pred             EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC-CeEEE-
Q 016457          108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ-NKVVS-  185 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~-  185 (389)
                      +|++.++.....+......-++..|+++ ..+++=-..+.+++|++...+.+..-  -|...|+.+.++|... ..+++ 
T Consensus       109 v~~vet~~~~s~~q~k~Q~~W~~qfs~d-Esl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvy  185 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQNGWVPQFSID-ESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVY  185 (566)
T ss_pred             eeeeccceehhheehhhhcCcccccccc-hhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEE
Confidence            9999986666555544333368888844 34443333578888887764433222  2455566666666522 12222 


Q ss_pred             ----EeCCCcEEEEecCCCCC-------------------------------------------C---------Ccccee
Q 016457          186 ----ASVDGLICTFDTGGDIN-------------------------------------------D---------DDLLES  209 (389)
Q Consensus       186 ----~~~d~~i~i~d~~~~~~-------------------------------------------~---------~~~~~~  209 (389)
                          .+.-+.|+||...-...                                           +         ......
T Consensus       186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V  265 (566)
T KOG2315|consen  186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV  265 (566)
T ss_pred             ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence                12223344444330000                                           0         001111


Q ss_pred             eeccCCceeeEEEecCCCcEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          210 VINVGTSVGKVGFFGETNKHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      -....++|.++.|++...++.+ -|-+=..+.|||++ +.++..+..              ++-.++-|+|.|+  +|+.
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~fnp~g~--ii~l  328 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAFFNPHGN--IILL  328 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceEECCCCC--EEEE
Confidence            1223579999999944333433 33445689999986 777777765              6667889999998  5554


Q ss_pred             ecC---CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEecc
Q 016457          289 GTG---AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSD  359 (389)
Q Consensus       289 g~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~  359 (389)
                      ++.   -|.|-|||+.+.++      +..+. .-.   ..++        .|+|||++++|++      .|+.++||+..
T Consensus       329 AGFGNL~G~mEvwDv~n~K~------i~~~~-a~~---tt~~--------eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNRKL------IAKFK-AAN---TTVF--------EWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             eecCCCCCceEEEeccchhh------ccccc-cCC---ceEE--------EEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            443   38999999998665      34333 111   2222        8999999999986      57889999998


Q ss_pred             CC
Q 016457          360 DS  361 (389)
Q Consensus       360 ~~  361 (389)
                      ..
T Consensus       391 G~  392 (566)
T KOG2315|consen  391 GS  392 (566)
T ss_pred             Cc
Confidence            76

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.64  E-value=2.1e-13  Score=117.05  Aligned_cols=187  Identities=15%  Similarity=0.093  Sum_probs=151.9

Q ss_pred             CCCCCccccCCCCeEEEEecCc-ee-eeeec----CcceEEEee--------------------cCCCCeEEEEecCCeE
Q 016457            9 QSQPKSQSCDNVNSIKRFGLKN-SI-QTNFG----DDYVFEIVP--------------------KNDWSLMAVSLSTNVV   62 (389)
Q Consensus         9 ~~~~~~~s~~~~~~i~~w~~~~-~~-~~~~~----~~~v~~~~~--------------------~~~~~~l~~~~~d~~i   62 (389)
                      ++....|....||.+++|++.+ .+ ..+..    .+...+..|                    +.|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3445788899999999999852 22 22221    333444443                    2234478888889999


Q ss_pred             EEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEE
Q 016457           63 KLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLL  140 (389)
Q Consensus        63 ~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  140 (389)
                      .+|++..|+....+.  .|.+.|.++.++.+-  ..|.|++.|+.+..|+....+.++.++..+..+.+++.+|++..++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            999999999887775  599999999998777  6999999999999999999999999999999999999999988888


Q ss_pred             EeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC-----CCCeEEEEeCCCcEEEEecCCC
Q 016457          141 AAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN-----NQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       141 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                      +++  +.|++||+++++.+.+|. +|.++|+++.|.-.     |..+|.+...+..+.+|-....
T Consensus       161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            877  699999999999999999 99999999999877     5545555666777888888753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=1.1e-14  Score=127.90  Aligned_cols=303  Identities=15%  Similarity=0.132  Sum_probs=209.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-  113 (389)
                      .+++.++..+|.|+-+|.++.-| +.+.|+... .+..-+. |.  -.|-.+.|+|.....+-++......-.+|++.. 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            67888999999999999998776 556666542 3322222 32  246677888765434444444444566899863 


Q ss_pred             --CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          114 --FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       114 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                        ......+.+|...|+.+.|+|+..-+++.+. |..+..||+++.. ++.... .-...-..++|+-..+ .+++.+..
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg  179 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHG  179 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccC
Confidence              3344567788999999999998887777665 9999999999864 455555 4456678899998887 44445567


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeecccccccCCccCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENARSLASDSWTLD  267 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~  267 (389)
                      +.|.+||++.+.   .++..+.+|-..|..+.|.......+++.+.|++|++||.......  +...             
T Consensus       180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-------------  243 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-------------  243 (1081)
T ss_pred             CceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-------------
Confidence            789999999553   6677777788889999987555667999999999999998754322  2221             


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc----cccCCCeEEEecccceeeeec-cCCCcccCCCCCCCce
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA----ATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQSHGI  342 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~~~~  342 (389)
                      ...+++.-.+.|-|+..++.---.+..+.+++-+....    ....+++..+. ||++.|... |.....-...+....-
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdf  322 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDF  322 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccce
Confidence            23677888888888765443332233455554433221    11345678887 999988887 4333333114444455


Q ss_pred             eEEEecCCCeEEEEeccCC
Q 016457          343 FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~~~  361 (389)
                      .|+|-+.|..+|+|.++..
T Consensus       323 QLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  323 QLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             eEEEeecCCceEeeeccHH
Confidence            7999999999999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.63  E-value=1e-11  Score=105.05  Aligned_cols=270  Identities=11%  Similarity=0.123  Sum_probs=171.5

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-e---------cCCeEEEEEccCCeEEEEEEcCCC----
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-S---------SDGTIRAWDTRSFHEVWSVTAGSQ----  125 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~---------~dg~i~iwd~~~~~~~~~~~~~~~----  125 (389)
                      ++|.+.|..+++.+..+..-..+- .+ ++|++  +.|+.+ +         .+..|.+||+.+.+.+..+.....    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg--~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDG--SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCC--CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            789999999999988886533333 24 99998  455554 4         478999999999999998886422    


Q ss_pred             ---CeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          126 ---EIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       126 ---~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                         ....++++|+++.+++...  +..|.+.|+.+++.+.++.-  .....-...++..   +.+-+.||......+...
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc---cEEEeecCceEEEEecCC
Confidence               2347899999999998774  79999999999999998872  2222222222221   223334565555444422


Q ss_pred             CCCCccceeeecc-CCcee-eEEEecCCCcEEEEEecCCcEEEEEcCCCc-----eeEEeecccccccCCccCCCCCcee
Q 016457          201 INDDDLLESVINV-GTSVG-KVGFFGETNKHLWCLTHIETLSIWDWKDGQ-----NVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       201 ~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      .........+... ..++. .-.|.+.++.++++... |+|.+.|+....     ....+....  ....|..   ....
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~--~~~~wrP---~g~q  251 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE--KADGWRP---GGWQ  251 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccc--cccccCC---Ccce
Confidence            1100000011101 00110 00445447777777777 999999965432     222221110  0112322   3334


Q ss_pred             eecccCCCCeEEEEEecC--------CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eE
Q 016457          274 DCHYPGEGENLWVIGGTG--------AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FG  344 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~--------dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l  344 (389)
                      -++++++++++|++.-..        .+.|.++|..+++.      +..+..+  ..+..+         +++||++ +|
T Consensus       252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv------i~~i~vG--~~~~~i---------avS~Dgkp~l  314 (352)
T TIGR02658       252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR------LRKIELG--HEIDSI---------NVSQDAKPLL  314 (352)
T ss_pred             eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE------EEEEeCC--CceeeE---------EECCCCCeEE
Confidence            499999999877744222        25899999998876      6666644  367788         9999999 77


Q ss_pred             EEec-CCCeEEEEeccCC
Q 016457          345 WTGG-EDGRLCCWLSDDS  361 (389)
Q Consensus       345 ~s~~-~dg~v~iW~~~~~  361 (389)
                      ++.. .++.|.+.|....
T Consensus       315 yvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEeCCCCCcEEEEECcCC
Confidence            7665 6888999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=2.2e-11  Score=105.65  Aligned_cols=284  Identities=13%  Similarity=0.218  Sum_probs=173.8

Q ss_pred             EEEEecC----CeEEEEeC--CCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEec----CCeEEEEEccCC----eE
Q 016457           53 MAVSLST----NVVKLYSP--VTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSS----DGTIRAWDTRSF----HE  116 (389)
Q Consensus        53 l~~~~~d----~~i~iw~~--~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~iwd~~~~----~~  116 (389)
                      +++|+..    +.|.+|++  +++++.  .... .......++++|++  ++|.+...    ++.|..|.+...    +.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~--~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDG--RRLYVVNEGSGDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTS--SEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCC--CEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence            4455554    68888887  444432  2222 34456778999998  68888776    578999988764    33


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcC-Cceeee---eee---------cccCCeeEEEEecCCCCe
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRN-KKQVAC---LEE---------SHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~---~~~---------~~~~~v~~~~~~~~~~~~  182 (389)
                      +............++++|++.+++++.. +|.|.++++.. +.....   +..         .......++.++|+++ +
T Consensus        79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~  157 (345)
T PF10282_consen   79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-F  157 (345)
T ss_dssp             EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-E
T ss_pred             eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-E
Confidence            4444434566778999999999999886 89999999986 332221   210         1124578999999996 5


Q ss_pred             EEEE-eCCCcEEEEecCCCCCCCcccee-eeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcC--CCceeEEeeccc
Q 016457          183 VVSA-SVDGLICTFDTGGDINDDDLLES-VINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWK--DGQNVASFENAR  257 (389)
Q Consensus       183 l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~~~~~~~~~  257 (389)
                      +++. -....|.+|++............ ..........++|+ ++++++++.. .++.|.+|++.  ++. +.......
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~-~~~~~~~~  235 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGS-LTEIQTIS  235 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCc-eeEEEEee
Confidence            5554 34557999999854311111122 22455678899999 5666665554 56789999988  342 22222111


Q ss_pred             ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc--CCccccCCCeEEEecccceeeeeccCCCcccCC
Q 016457          258 SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY--GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGR  335 (389)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  335 (389)
                      .+.. .+  ........+.++|+|+.+| ++......|.+|++..  +++    +.+..+. .....-+.+         
T Consensus       236 ~~~~-~~--~~~~~~~~i~ispdg~~ly-vsnr~~~sI~vf~~d~~~g~l----~~~~~~~-~~G~~Pr~~---------  297 (345)
T PF10282_consen  236 TLPE-GF--TGENAPAEIAISPDGRFLY-VSNRGSNSISVFDLDPATGTL----TLVQTVP-TGGKFPRHF---------  297 (345)
T ss_dssp             SCET-TS--CSSSSEEEEEE-TTSSEEE-EEECTTTEEEEEEECTTTTTE----EEEEEEE-ESSSSEEEE---------
T ss_pred             eccc-cc--cccCCceeEEEecCCCEEE-EEeccCCEEEEEEEecCCCce----EEEEEEe-CCCCCccEE---------
Confidence            1111 00  1223678899999999543 3444577899999943  333    1112222 112224555         


Q ss_pred             CCCCCceeEEEec-CCCeEEEEeccC
Q 016457          336 PAQSHGIFGWTGG-EDGRLCCWLSDD  360 (389)
Q Consensus       336 ~~s~~~~~l~s~~-~dg~v~iW~~~~  360 (389)
                      +++|+|++|+++. .++.|.+|+++.
T Consensus       298 ~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  298 AFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            8999999988775 677999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=126.09  Aligned_cols=265  Identities=12%  Similarity=0.097  Sum_probs=183.6

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCC----CCEEEEEecCCeEEEEEccCCeEEEEEEcCCC
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPST----PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ  125 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  125 (389)
                      ++|+.|. .-.|.+||+..+..+..+.. +-..+.    .+.+.    +.+++++..-+.+..=+.. .+....+   ..
T Consensus        18 ~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~~~~---s~   88 (967)
T KOG0974|consen   18 DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQIIERF---SD   88 (967)
T ss_pred             ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchh-hhhhhhc---cc
Confidence            4666554 56799999988866544421 111111    11110    0255555544444332221 1111122   22


Q ss_pred             CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe--eE---EEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV--TQ---VHFVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                      .|....+...+..++.+..++.+.+||...+.....+.  +....  .+   +.++++. -++++|+.-+.|.+|+... 
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~-  164 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHE-  164 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccc-
Confidence            33334444477888888889999999998887777665  33221  12   2344554 4899999999999999982 


Q ss_pred             CCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-EeecccccccCCccCCCCCceeeecccC
Q 016457          201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                         ......+.+|++.|.++.++ .++.++++.++|.++++|++.+.+... ...            +|+..++.++|.|
T Consensus       165 ---dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f------------gHsaRvw~~~~~~  228 (967)
T KOG0974|consen  165 ---DNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGF------------GHSARVWACCFLP  228 (967)
T ss_pred             ---cCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccc------------cccceeEEEEecc
Confidence               22233788999999999999 899999999999999999999887665 222            3889999999999


Q ss_pred             CCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          280 EGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       280 ~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      +    .+++++.|.+.++|+....++       ..+. +|. ..|..+         +..++...++|++.||.+++|++
T Consensus       229 n----~i~t~gedctcrvW~~~~~~l-------~~y~-~h~g~~iw~~---------~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  229 N----RIITVGEDCTCRVWGVNGTQL-------EVYD-EHSGKGIWKI---------AVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             c----eeEEeccceEEEEEeccccee-------hhhh-hhhhcceeEE---------EEcCCceEEEeeccCcchhhhhh
Confidence            7    579999999999997776554       4444 675 677888         77778888999999999999999


Q ss_pred             cCCcccc
Q 016457          359 DDSSEIN  365 (389)
Q Consensus       359 ~~~~~~~  365 (389)
                      .....+.
T Consensus       288 ~~r~~e~  294 (967)
T KOG0974|consen  288 NGRGLEG  294 (967)
T ss_pred             hcccccc
Confidence            8774433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=4.9e-12  Score=113.56  Aligned_cols=212  Identities=12%  Similarity=0.088  Sum_probs=138.7

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.++|...+ ....+..+...+...+|+|++  +.|+.+..+   ..|.+||+.+++... +..+...+.+++|+|+++
T Consensus       171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg--~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       171 ELQVADYDGA-NPQTITRSREPILSPAWSPDG--QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             eEEEEcCCCC-CCEEeecCCCceecccCCCCC--CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence            6888887643 344455566778999999999  677776543   479999998876543 333445677899999998


Q ss_pred             eEEEeec-C--CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeee
Q 016457          138 YLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       138 ~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .++.+.. +  ..|++||+.++... .+. .+........|+|+++ .|+..+. ++  .|+++|+.++.     ...+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~  318 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE-----VRRLT  318 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence            8876543 3  46899998876543 333 3444556789999996 6665543 33  57777877432     23333


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ..........|+ +++++++.++.++   .|.+||+.++... .+...             .......|+|+|+  +|+.
T Consensus       319 ~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-------------~~~~~p~~spdg~--~l~~  381 (417)
T TIGR02800       319 FRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-------------GLDESPSFAPNGR--MILY  381 (417)
T ss_pred             cCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-------------CCCCCceECCCCC--EEEE
Confidence            345566778898 6777888777765   7889998875432 22211             2234567999998  4444


Q ss_pred             ecCCc---eEEEEEec
Q 016457          289 GTGAG---TVGYFPVN  301 (389)
Q Consensus       289 g~~dg---~i~i~~~~  301 (389)
                      .+.++   .+++.+..
T Consensus       382 ~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       382 ATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEeCCCcEEEEEEECC
Confidence            44432   34555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.57  E-value=2.6e-12  Score=101.20  Aligned_cols=264  Identities=14%  Similarity=0.128  Sum_probs=177.4

Q ss_pred             CCCeEEEEecCc----eeeeeec--CcceEEEeecC---CCC-eEEEEecCCeEEEEeCCCceeeeeecCCC------Cc
Q 016457           19 NVNSIKRFGLKN----SIQTNFG--DDYVFEIVPKN---DWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHS------ST   82 (389)
Q Consensus        19 ~~~~i~~w~~~~----~~~~~~~--~~~v~~~~~~~---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~------~~   82 (389)
                      .-|.+.+|+++.    +..+++.  ...++.|.|..   +|. .++-+-..|.|.++..........+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            456788888752    2333433  67788888864   444 56666778999999865444444443311      12


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECc-CCce
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWR-NKKQ  158 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~-~~~~  158 (389)
                      ..++.|++.+  ..++++..+|.+.+-+.......  +.++.|..+++-..|+...+ .+++||.|+.+..||+| .++.
T Consensus       124 ~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  124 ALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence            4577898888  68999999999987666655443  48899999999999986555 45667779999999999 3444


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      +.+-..-|...|.+|.-+|..+..+++|+.|-.|++||.|+-   .+++.. ....+.|..+..+|.....++.++.-+-
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm---~kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM---GKPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc---cCcccc-CccccceEEEEecchhhhHHHHHHHhcC
Confidence            544233688999999999887789999999999999999942   233322 2345789999999766555555555555


Q ss_pred             EEEEEcCCCcee-----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEE-EEEecc
Q 016457          239 LSIWDWKDGQNV-----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVG-YFPVNY  302 (389)
Q Consensus       239 i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~-i~~~~~  302 (389)
                      .+|-+...+...     ..+..            |..-+..-.|.....  +|++++ .|..++ +|-.-+
T Consensus       278 ~ki~~~~~~~~e~~~~~~s~~~------------hdSl~YG~DWd~~~~--~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  278 AKILDSSDKVLEFQIVLPSDKI------------HDSLCYGGDWDSKDS--FLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ceEEEecccccchheeeecccc------------ccceeeccccccccc--eeeeeeccccceeeeeeecc
Confidence            677776654222     22222            556666666744333  677754 455544 664443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=6.4e-13  Score=104.49  Aligned_cols=151  Identities=15%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             EEEEEeCCCCeEEEeec----------CCeEEEEECcC-CceeeeeeecccCCeeEEEEecCCCCeEEE--EeCCCcEEE
Q 016457          128 FCFSFGGSTDYLLAAGC----------GSQIQFWDWRN-KKQVACLEESHVEDVTQVHFVPNNQNKVVS--ASVDGLICT  194 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~i  194 (389)
                      ..+.|+|.|..|++-..          -+...+|.++. ...+..+.....++|.+++|+|++. .|++  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-EFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-EEEEEEccCCcccEE
Confidence            35778888888776544          13456666643 2344444423456799999999996 6544  345779999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      ||++.     ..+..+  ....+..+.|+ |+|++|++++.+   |.|.+||.++.+.+..+..              ..
T Consensus        88 yd~~~-----~~i~~~--~~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--------------~~  145 (194)
T PF08662_consen   88 YDVKG-----KKIFSF--GTQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--------------SD  145 (194)
T ss_pred             EcCcc-----cEeEee--cCCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--------------Cc
Confidence            99972     223333  34577899999 788899888754   5799999998888877653              44


Q ss_pred             eeeecccCCCCeEEEEEecC------CceEEEEEeccC
Q 016457          272 FVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYG  303 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~  303 (389)
                      +..++|+|+|+  ++++++.      |..++||+....
T Consensus       146 ~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  146 ATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEEcCCCC--EEEEEEeccceeccccEEEEEecCe
Confidence            78999999999  7776653      688999999743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=7.1e-12  Score=112.52  Aligned_cols=219  Identities=16%  Similarity=0.056  Sum_probs=143.3

Q ss_pred             CCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...|.++|.. ...+.+.. ...+...+|+|||++|+.+...   ..|++||+.+++... +..+...+.+++|+|++  
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg--  245 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG--  245 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence            4467777764 33444444 6678899999999999987654   489999998875443 33355667789999998  


Q ss_pred             CEEE-EEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccC
Q 016457           95 HVLH-SCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        95 ~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +.|+ +.+.++  .|.+||+.++... .+..+........|+|++..++.++. +  ..|.++|+.+++.. .+. .+..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCC
Confidence            4554 555444  5888898876543 33334444557789999998887665 3  36888888766543 343 3456


Q ss_pred             CeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIW  242 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~  242 (389)
                      .+..+.|+|++. .++.++.++   .|.+||+.++.     ...+. .........|+ +++..|+..+.++   .+.+.
T Consensus       323 ~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~-~~~~~~~p~~s-pdg~~l~~~~~~~~~~~l~~~  394 (417)
T TIGR02800       323 YNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG-----ERVLT-DTGLDESPSFA-PNGRMILYATTRGGRGVLGLV  394 (417)
T ss_pred             CccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC-----eEEcc-CCCCCCCceEC-CCCCEEEEEEeCCCcEEEEEE
Confidence            677889999996 777777665   78899988532     11111 12233456788 6666666665543   45555


Q ss_pred             EcCCCceeEEe
Q 016457          243 DWKDGQNVASF  253 (389)
Q Consensus       243 d~~~~~~~~~~  253 (389)
                      +.. ++....+
T Consensus       395 ~~~-g~~~~~~  404 (417)
T TIGR02800       395 STD-GRFRARL  404 (417)
T ss_pred             ECC-CceeeEC
Confidence            533 4444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=8.1e-12  Score=114.22  Aligned_cols=180  Identities=18%  Similarity=0.187  Sum_probs=142.3

Q ss_pred             CccccCCCCeEEEEecCce--eeeeecCc-----ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           13 KSQSCDNVNSIKRFGLKNS--IQTNFGDD-----YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~--~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      ..+....++.+.+|+....  ...+.+.+     ...-+-++++.-++++|+.-+.|.+|++...+.-..+.+|.+.|.+
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~  180 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS  180 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence            4555667778888887642  22222211     1222335667779999999999999998743333368899999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE-EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW-SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      +.|+.++  .++++.+.|.++|+|++.+.+... ..-+|...|+.+.|.|+  .+++++.|.+.++|+.. +..+..+. 
T Consensus       181 i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~-  254 (967)
T KOG0974|consen  181 IVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD-  254 (967)
T ss_pred             EEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh-
Confidence            9999999  799999999999999999988776 67789999999999966  99999999999999754 55555666 


Q ss_pred             cc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          165 SH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       165 ~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      .| ...+..++..+... ++++++.|+.+++||+.+
T Consensus       255 ~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  255 EHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence            44 45799999999885 999999999999999874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=3.1e-10  Score=98.47  Aligned_cols=266  Identities=12%  Similarity=0.170  Sum_probs=171.2

Q ss_pred             CCCeEEEEecCc---ee---eeeecCcceEEEeecCCCCeEEEEec----CCeEEEEeCCC--ce--eeeeecCCCCcEE
Q 016457           19 NVNSIKRFGLKN---SI---QTNFGDDYVFEIVPKNDWSLMAVSLS----TNVVKLYSPVT--GQ--YSGECKGHSSTVN   84 (389)
Q Consensus        19 ~~~~i~~w~~~~---~~---~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~--~~--~~~~~~~~~~~v~   84 (389)
                      ..+.|..|++..   .+   ...........++++|++++|++...    ++.|..|.+..  ++  .+...........
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            447888888731   22   22222566678899999999999876    46899998765  33  3333332344556


Q ss_pred             EEEEeCCCCCCEEEEEe-cCCeEEEEEccC-CeEEEE---EE----------cCCCCeEEEEEeCCCCeEEEeec-CCeE
Q 016457           85 QISFSGPSTPHVLHSCS-SDGTIRAWDTRS-FHEVWS---VT----------AGSQEIFCFSFGGSTDYLLAAGC-GSQI  148 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-d~~i  148 (389)
                      .++++|++  .+|+++. .+|+|.++++.. +.....   +.          .......++.++|++++++++.. ...|
T Consensus        91 ~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   91 HIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             EEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            79999999  6777776 589999999986 433322   21          11356789999999999998876 5689


Q ss_pred             EEEECcCCc--e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc------CCcee
Q 016457          149 QFWDWRNKK--Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV------GTSVG  218 (389)
Q Consensus       149 ~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~  218 (389)
                      .+|++....  .  ...+........+.++|+|+++..+++...++.|.+|++.........+......      .....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  2  2233324556789999999997455666678889999998322112222222111      12567


Q ss_pred             eEEEecCCCcEEEEEe-cCCcEEEEEcC--CCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEE-EecCC
Q 016457          219 KVGFFGETNKHLWCLT-HIETLSIWDWK--DGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI-GGTGA  292 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~g~~d  292 (389)
                      .++++ +++++|+++. ..++|.+|++.  +++.  +..+..            .......+.++|+|+  +|+ +.-.+
T Consensus       249 ~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~------------~G~~Pr~~~~s~~g~--~l~Va~~~s  313 (345)
T PF10282_consen  249 EIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT------------GGKFPRHFAFSPDGR--YLYVANQDS  313 (345)
T ss_dssp             EEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE------------SSSSEEEEEE-TTSS--EEEEEETTT
T ss_pred             eEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC------------CCCCccEEEEeCCCC--EEEEEecCC
Confidence            88999 7777777665 46789999993  2332  222222            124578899999998  544 44467


Q ss_pred             ceEEEEEec
Q 016457          293 GTVGYFPVN  301 (389)
Q Consensus       293 g~i~i~~~~  301 (389)
                      +.|.+|+++
T Consensus       314 ~~v~vf~~d  322 (345)
T PF10282_consen  314 NTVSVFDID  322 (345)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            889999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.54  E-value=1.8e-12  Score=104.26  Aligned_cols=257  Identities=15%  Similarity=0.141  Sum_probs=180.1

Q ss_pred             eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeE
Q 016457           71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQI  148 (389)
Q Consensus        71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i  148 (389)
                      ..+..+.||.+.|++...-|..  .-+++.+.|.+++||--+ .++.-..+.. -..+++++.+.+....|+++-..|++
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e--~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKE--EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCC--CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            3456778999999998888877  689999999999999644 3443333332 26889999999777778887778999


Q ss_pred             EEEECc----CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457          149 QFWDWR----NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG  224 (389)
Q Consensus       149 ~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (389)
                      .-+.+.    ....++... .|...+..+.|+-... ++++.+.|..+..--.+.+........     ......+.+. 
T Consensus        93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d-  164 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFD-  164 (404)
T ss_pred             EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEe-----eccCCCCcee-
Confidence            888654    233444444 7999999999998775 899999887765444443321111111     1111222221 


Q ss_pred             CCCcEEEEEecCCcEEEEEcC--CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          225 ETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      -  .+...|...|.|.+-.+.  ....+.++.+            |.+.+.+++|.+...  .|.+|..|..+.+||+..
T Consensus       165 ~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~------------h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  165 A--LYAFVGDHSGQITMLKLEQNGCQLITTFNG------------HTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             e--EEEEecccccceEEEEEeecCCceEEEEcC------------cccceEEEEEcCCCc--EEEeccccCceEEEeccC
Confidence            0  144555555655554433  3456666666            789999999999877  789999999999999987


Q ss_pred             CCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccchhh
Q 016457          303 GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSW  368 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~~~  368 (389)
                      .+.      +.....+|...|..+         .+-+--+.|++++.||.|.+|+.+..-.+...|
T Consensus       229 ~~g------~~~el~gh~~kV~~l---------~~~~~t~~l~S~~edg~i~~w~mn~~r~etpew  279 (404)
T KOG1409|consen  229 RKG------TAYELQGHNDKVQAL---------SYAQHTRQLISCGEDGGIVVWNMNVKRVETPEW  279 (404)
T ss_pred             Ccc------eeeeeccchhhhhhh---------hhhhhheeeeeccCCCeEEEEeccceeecCccc
Confidence            654      343345999999999         555666778999999999999999774444444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1.6e-13  Score=131.45  Aligned_cols=212  Identities=15%  Similarity=0.189  Sum_probs=164.6

Q ss_pred             EEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEE
Q 016457           23 IKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        23 i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~  100 (389)
                      ..-|..+..-..+++ -..|.++.-+|...+-++|+.||.|++|....++.+..++. -...|+.+.|+..|  +.+..+
T Consensus      2192 ~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG--nk~~i~ 2269 (2439)
T KOG1064|consen 2192 GSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG--NKFGIV 2269 (2439)
T ss_pred             ccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC--Cceeee
Confidence            333444333333444 67788999999989999999999999999988887777652 33789999999999  789999


Q ss_pred             ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457          101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  177 (389)
                      ..||.+.+|.+. .++....+.|......+.|-  +..+++++.   ++.+.+||..-.....-+..+|...++++++-|
T Consensus      2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred             ccCCceeecccC-CcceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence            999999999987 77788888999999999996  356666655   689999997643322222238999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      ..+ +|++|+.+|.|++||++..    +.+..+..         +  ....++++++..|.|+||++.....++++..
T Consensus      2347 ~~q-llisggr~G~v~l~D~rqr----ql~h~~~~---------~--~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2347 KHQ-LLISGGRKGEVCLFDIRQR----QLRHTFQA---------L--DTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cce-EEEecCCcCcEEEeehHHH----HHHHHhhh---------h--hhhheeeccCcccceEEEEccccchhhcCch
Confidence            996 9999999999999999922    22222221         2  2456899999999999999998888888775

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=3.6e-10  Score=92.19  Aligned_cols=277  Identities=12%  Similarity=0.194  Sum_probs=177.8

Q ss_pred             CCeEEEEeCCCc--ee-eeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccC--CeEE--EEEEcCCCCeE
Q 016457           59 TNVVKLYSPVTG--QY-SGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRS--FHEV--WSVTAGSQEIF  128 (389)
Q Consensus        59 d~~i~iw~~~~~--~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~  128 (389)
                      +.-|++|++.+.  +. ...+-.+.+..+-|+|+|+.  +.|.++..+   |.|..|.++.  |+..  ........+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~--~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ--RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCC--CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            456999998742  21 11223366778999999998  688887654   6777777764  4432  22222245558


Q ss_pred             EEEEeCCCCeEEEeec-CCeEEEEECcC-Cce---eeeeeecccCC----------eeEEEEecCCCCeEEEEeC-CCcE
Q 016457          129 CFSFGGSTDYLLAAGC-GSQIQFWDWRN-KKQ---VACLEESHVED----------VTQVHFVPNNQNKVVSASV-DGLI  192 (389)
Q Consensus       129 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~-d~~i  192 (389)
                      .+++++++..++++.. .|.|.++-++. |.+   +..+.  |.+.          +.+..+.|+++ ++++..- --.|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri  169 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRI  169 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceE
Confidence            9999999999998887 79999999875 332   23333  5444          88899999996 6666542 3469


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCC-ceeEEeecccccccCCccCCCCC
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDG-QNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      .+|++..+.........+ ......+.|.|+ |++++.++.++ +++|-+|..... ..+..++....++..   +....
T Consensus       170 ~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d---F~g~~  244 (346)
T COG2706         170 FLYDLDDGKLTPADPAEV-KPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED---FTGTN  244 (346)
T ss_pred             EEEEcccCcccccccccc-CCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc---cCCCC
Confidence            999998554222222222 456678899999 78887766665 789999998874 333333322222111   12345


Q ss_pred             ceeeecccCCCCeEEEEEec-CCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          271 YFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ....+..+++|+  ||.++. ....|.+|.+....-     .+..+.  ..+...-++.         .|+++|++|+++
T Consensus       245 ~~aaIhis~dGr--FLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F---------~i~~~g~~Liaa  308 (346)
T COG2706         245 WAAAIHISPDGR--FLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDF---------NINPSGRFLIAA  308 (346)
T ss_pred             ceeEEEECCCCC--EEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccc---------eeCCCCCEEEEE
Confidence            677889999999  665543 234788888765421     011111  1122223334         889999999998


Q ss_pred             cCCC-eEEEEeccCC
Q 016457          348 GEDG-RLCCWLSDDS  361 (389)
Q Consensus       348 ~~dg-~v~iW~~~~~  361 (389)
                      ..|+ .|.+|.++..
T Consensus       309 ~q~sd~i~vf~~d~~  323 (346)
T COG2706         309 NQKSDNITVFERDKE  323 (346)
T ss_pred             ccCCCcEEEEEEcCC
Confidence            7554 6999998865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.8e-13  Score=131.13  Aligned_cols=228  Identities=12%  Similarity=0.187  Sum_probs=171.7

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      +-..|.++.=+|..  .+.+||+.||.|++|....++.+..++.. ...|+.+.|+.+|+.+-.+..||.+.+|.+. .+
T Consensus      2207 ~v~~v~r~~sHp~~--~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD--PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ccCceeeecCCCCC--ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence            45668888888877  79999999999999999999888877643 5889999999999999999999999999976 66


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      +....+ .|....+.+.|-.   ..+++++   .++.+.+||..-.. ....+.  ..|...++.+++. |..++|++|+
T Consensus      2284 ~~~s~q-chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l~~~-P~~qllisgg 2355 (2439)
T KOG1064|consen 2284 PYTSWQ-CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVLAYA-PKHQLLISGG 2355 (2439)
T ss_pred             ceeccc-cCCccccceeeee---hhhhccccCCCCCcccchhcccCc-ccceee--eecCCCceEEEEc-CcceEEEecC
Confidence            666666 7999899998886   2677765   46889999987321 112222  6799999999999 7788999999


Q ss_pred             cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEE
Q 016457          235 HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAV  314 (389)
Q Consensus       235 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~  314 (389)
                      .+|.|++||++..+.++.++.                     +. ...  ++++|+..|.|+||++.....      +..
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------------------~~-~~~--~f~~~ss~g~ikIw~~s~~~l------l~~ 2405 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------------------LD-TRE--YFVTGSSEGNIKIWRLSEFGL------LHT 2405 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------------------hh-hhh--eeeccCcccceEEEEccccch------hhc
Confidence            999999999998888777652                     22 223  889999999999999987655      455


Q ss_pred             Eecccceeeeecc-CCCcccCCCCCCCceeEEEecCCCe
Q 016457          315 LVGGHTAVVRSVL-PMPSVQGRPAQSHGIFGWTGGEDGR  352 (389)
Q Consensus       315 ~~~~h~~~v~~~~-~~~~~~~~~~s~~~~~l~s~~~dg~  352 (389)
                      ++..|.  =.+++ -.+.++   +-..+..|.+|+.||+
T Consensus      2406 ~p~e~a--k~gfFr~~g~Q~---~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2406 FPSEHA--KQGFFRNIGMQI---NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             Cchhhc--ccchhhhcCcee---eeccCceEEEecCCCC
Confidence            543342  12222 122222   2233445677887874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3e-11  Score=108.61  Aligned_cols=214  Identities=12%  Similarity=0.030  Sum_probs=133.5

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.++|.+.++ ...+..+...+....|+|++  +.|+..+.+   ..|.+||+.+++... +......+....|+|+++
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG--~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDG--KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCC--CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC
Confidence            47888877444 44455577789999999999  677665533   368899998876543 332334556789999999


Q ss_pred             eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceeee
Q 016457          138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .++.+.. +|  .|++||+.+++.. .+. .+........|+|+++ .|+..+ .++  .|+++|+.++.     ...+.
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~spDg~-~i~f~s~~~g~~~iy~~d~~~g~-----~~~lt  327 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGKDGR-TLYFTSDRGGKPQIYKVNVNGGR-----AERVT  327 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence            8876543 44  6888999877643 344 3455567789999996 555544 343  47777776542     22222


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecC-C--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHI-E--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ..........|+ ++++.++..+.+ +  .|.++|+.+++.. .+...             .......|+|+|+.+ +++
T Consensus       328 ~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-------------~~~~~p~~spdg~~i-~~~  391 (430)
T PRK00178        328 FVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-------------SLDESPSVAPNGTML-IYA  391 (430)
T ss_pred             cCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-------------CCCCCceECCCCCEE-EEE
Confidence            122233456788 667777666543 3  5888998877543 33221             112245799999843 233


Q ss_pred             ecCCc--eEEEEEecc
Q 016457          289 GTGAG--TVGYFPVNY  302 (389)
Q Consensus       289 g~~dg--~i~i~~~~~  302 (389)
                      ...+|  .|+++++..
T Consensus       392 ~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        392 TRQQGRGVLMLVSING  407 (430)
T ss_pred             EecCCceEEEEEECCC
Confidence            33333  466666653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=1e-13  Score=109.89  Aligned_cols=303  Identities=13%  Similarity=0.107  Sum_probs=188.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-----eeeeeecCCC------------CcEEEEEEeCCCCCCEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-----QYSGECKGHS------------STVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~------------~~v~~i~~~~~~~~~~l~s~  100 (389)
                      .+.|+++.|...|.+|++|...|.|.+|.-+..     +....+++|.            ..|..|.|..++....++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            678999999999999999999999999975432     2334455554            45889999876644567777


Q ss_pred             ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---------CCeEEEEECcCCceeeeeeecccCCee
Q 016457          101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---------GSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                      +.|.+|++|.+...... .+..  ...+.---+|-++-+.+...         |..|..      .+.+.....|.--+.
T Consensus       106 tNdktiKlWKiyeknlk-~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------~p~rvyaNaH~yhiN  176 (460)
T COG5170         106 TNDKTIKLWKIYEKNLK-VVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------KPCRVYANAHPYHIN  176 (460)
T ss_pred             cCCceeeeeeeecccch-hhhc--cccccccccccCCCcCCHHHhhcccccccceEEEe------ccceeccccceeEee
Confidence            78999999998754221 1111  01111011112221111110         111111      112222236888899


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-----CCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-----GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ++.|+.+.+ .++++ .|=.|.+|++.-.... -.+..+..|     ...|++..|+|.....+.-++..|.|++-|++.
T Consensus       177 SiS~NsD~e-t~lSa-DdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         177 SISFNSDKE-TLLSA-DDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeeecCchh-eeeec-cceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            999999875 55555 5788999998732111 112222222     246788999987788888899999999999984


Q ss_pred             Ccee----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc--
Q 016457          247 GQNV----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT--  320 (389)
Q Consensus       247 ~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~--  320 (389)
                      ....    ..+...-......+-.+-...|.++.|+++|+  ||++-+. -+|+|||+...+.     |+.+++ -|.  
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdy-ltvkiwDvnm~k~-----pikTi~-~h~~l  324 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDY-LTVKIWDVNMAKN-----PIKTIP-MHCDL  324 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEecc-ceEEEEecccccC-----Cceeec-hHHHH
Confidence            3211    11110000000000001236788899999998  8777643 5799999987654     456664 554  


Q ss_pred             -eeeeeccC---CCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          321 -AVVRSVLP---MPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       321 -~~v~~~~~---~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       ..+.+++.   .-..+.+.||.|.+.+.+|+.....-++-.+.+
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccC
Confidence             34455542   223445689999999999999998888886655

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.1e-11  Score=108.51  Aligned_cols=218  Identities=13%  Similarity=0.020  Sum_probs=137.2

Q ss_pred             eEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           22 SIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        22 ~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      .|.++|.. ...+.+.. ...+...+|+|||+.|+..+.+   ..|.+|++.+++... +....+.+....|+|++  +.
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG--~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG--SK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC--CE
Confidence            46777764 23344433 6778999999999999877643   369999998876433 22233445678999999  56


Q ss_pred             EE-EEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCCe
Q 016457           97 LH-SCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        97 l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      |+ +...+|  .|.+||+.+++.. .+..+........|+|+++.++..+. +  ..|+++|+.+++... +. ......
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt-~~~~~~  333 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT-FVGNYN  333 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCCc
Confidence            55 555555  5888899877654 34444555677899999998877765 3  367888887776432 22 122334


Q ss_pred             eEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-C--cEEEEEc
Q 016457          171 TQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-E--TLSIWDW  244 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~i~i~d~  244 (389)
                      ....|+|+++ .++..+. ++  .|.++|+.++.     ...+. .........|+ ++++.++..+.+ +  .|.++++
T Consensus       334 ~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~-----~~~lt-~~~~~~~p~~s-pdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        334 ARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGS-----VRILT-DTSLDESPSVA-PNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             cceEECCCCC-EEEEEEccCCceEEEEEECCCCC-----EEEcc-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEEEC
Confidence            4678999996 6665554 33  47888988652     11111 11122355788 666766655543 3  4667776


Q ss_pred             CCCceeEEee
Q 016457          245 KDGQNVASFE  254 (389)
Q Consensus       245 ~~~~~~~~~~  254 (389)
                      . +.....+.
T Consensus       406 ~-g~~~~~l~  414 (430)
T PRK00178        406 N-GRVRLPLP  414 (430)
T ss_pred             C-CCceEECc
Confidence            4 33333443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-11  Score=108.74  Aligned_cols=232  Identities=13%  Similarity=0.007  Sum_probs=141.0

Q ss_pred             CeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC
Q 016457           21 NSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        21 ~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      ..|.++|... ..+.+.. ...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +..........+|+|++  +
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG--~  274 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDG--K  274 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCC--C
Confidence            3566667643 2333333 6788899999999998877543   268899998776432 22222334578999999  5


Q ss_pred             EEE-EEecCCe--EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCC
Q 016457           96 VLH-SCSSDGT--IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        96 ~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      .|+ +.+.+|.  |.++|+.+++.. .+..+.......+|+|+++.++..+. +  ..|.++|+.+++... +. .....
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~  351 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQ  351 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCC
Confidence            554 5566665  777788776653 34444456678899999998877665 3  357777887766433 32 12223


Q ss_pred             eeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCC--cEEEEE
Q 016457          170 VTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIE--TLSIWD  243 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~--~i~i~d  243 (389)
                      ....+|+|+|+ .|+..+. ++  .|.++|+.++.     ...+... .......|+ ++++.|+..+ .++  .+.+++
T Consensus       352 ~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~-~~d~~ps~s-pdG~~I~~~~~~~g~~~l~~~~  423 (448)
T PRK04792        352 NLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGA-----MQVLTST-RLDESPSVA-PNGTMVIYSTTYQGKQVLAAVS  423 (448)
T ss_pred             CcCeeECCCCC-EEEEEEecCCceEEEEEECCCCC-----eEEccCC-CCCCCceEC-CCCCEEEEEEecCCceEEEEEE
Confidence            44578999997 6555443 44  35567776542     1111111 122244788 5666655544 344  367777


Q ss_pred             cCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      . ++.....+..            +...+...+|+|
T Consensus       424 ~-~G~~~~~l~~------------~~g~~~~p~Wsp  446 (448)
T PRK04792        424 I-DGRFKARLPA------------GQGEVKSPAWSP  446 (448)
T ss_pred             C-CCCceEECcC------------CCCCcCCCccCC
Confidence            6 4555555543            224456667776

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.50  E-value=4.9e-10  Score=94.95  Aligned_cols=263  Identities=13%  Similarity=0.065  Sum_probs=162.5

Q ss_pred             CeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCCC-------C
Q 016457           21 NSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGHS-------S   81 (389)
Q Consensus        21 ~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~-------~   81 (389)
                      ++|.+.|..  +.+.++.....-..+ ++||++.|+++..          +..|.+||..+++.+..+.-..       .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            789999875  344555542223334 9999998888866          6899999999999988876322       2


Q ss_pred             cEEEEEEeCCCCCCEEEEEe-c-CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-Cce
Q 016457           82 TVNQISFSGPSTPHVLHSCS-S-DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-KKQ  158 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~  158 (389)
                      .-..++++|++  ++|+... . +..|.+.|+.+++.+..+.... ...-...+ ....+ +-+.||......+.+ ++.
T Consensus       106 ~~~~~~ls~dg--k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       106 YPWMTSLTPDN--KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccceEEECCCC--CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCce
Confidence            23478999999  6777655 3 6899999999999999888642 22222222 22222 333445444433322 221


Q ss_pred             e-eeeeeccc--CCe-eEEEEec-CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--------cCCceeeEEEecC
Q 016457          159 V-ACLEESHV--EDV-TQVHFVP-NNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--------VGTSVGKVGFFGE  225 (389)
Q Consensus       159 ~-~~~~~~~~--~~v-~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~  225 (389)
                      . ....-.+.  .++ ..-.|.+ ++. ++.+... |.|.+.|+...............        ....+..++++ +
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~  257 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-R  257 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-C
Confidence            1 11100011  000 0004455 664 6665554 99999997643211111111110        12233448998 5


Q ss_pred             CCcEEEEEe----------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          226 TNKHLWCLT----------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       226 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      +++.+++..          ..+.|.++|..+++.+..+...             ..+..++++||++..++++...++.|
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-------------~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-------------HEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-------------CceeeEEECCCCCeEEEEeCCCCCcE
Confidence            556666532          2258999999999999888742             57889999999983334455568889


Q ss_pred             EEEEeccCCc
Q 016457          296 GYFPVNYGGA  305 (389)
Q Consensus       296 ~i~~~~~~~~  305 (389)
                      .++|..+++.
T Consensus       325 sViD~~t~k~  334 (352)
T TIGR02658       325 YIFDAETGKE  334 (352)
T ss_pred             EEEECcCCeE
Confidence            9999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.5e-11  Score=108.73  Aligned_cols=214  Identities=11%  Similarity=-0.003  Sum_probs=129.2

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.++|....+. ..+..+...+....|+|++  +.|+..+. ++  .|.+||+.+++... +..........+|+|+++
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG--~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDG--RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCC--CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC
Confidence            677778654433 3444567788999999999  56766543 33  58888988776533 222233445789999999


Q ss_pred             eEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceeee
Q 016457          138 YLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       138 ~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .++.+.. ++  .|+++|+.+++.. .+. .+........|+|+++ .|+..+ .++  .|+++|+.++.     ...+.
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~-~I~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt  346 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGK-SLIFTSERGGKPQIYRVNLASGK-----VSRLT  346 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC-----EEEEe
Confidence            8876543 55  4888898877543 344 3455667889999997 555444 344  46666776442     22222


Q ss_pred             ccCCceeeEEEecCCCcEEEEEec-CC--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTH-IE--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      .........+|+ +++++|+..+. ++  .|.++|+.+++.. .+...             .......|+|+|+.++ ++
T Consensus       347 ~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-------------~~d~~ps~spdG~~I~-~~  410 (448)
T PRK04792        347 FEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-------------RLDESPSVAPNGTMVI-YS  410 (448)
T ss_pred             cCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-------------CCCCCceECCCCCEEE-EE
Confidence            222233456888 66766666554 34  4566787776543 22211             1112347999998543 33


Q ss_pred             ecCCc--eEEEEEecc
Q 016457          289 GTGAG--TVGYFPVNY  302 (389)
Q Consensus       289 g~~dg--~i~i~~~~~  302 (389)
                      ...+|  .+++++...
T Consensus       411 ~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        411 TTYQGKQVLAAVSIDG  426 (448)
T ss_pred             EecCCceEEEEEECCC
Confidence            33444  366677643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=3.5e-11  Score=103.05  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=170.6

Q ss_pred             CCeEEEEecCceee--eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           20 VNSIKRFGLKNSIQ--TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        20 ~~~i~~w~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      ...+++|++.+...  .+.. ...-++..|++|..+.|- -..+.+.+|+....+.... .-|...|+.+.++|...+..
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~  181 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPF  181 (566)
T ss_pred             CCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCce
Confidence            45688999876222  2222 222268899998754433 3367899999876432222 22678899999999865456


Q ss_pred             EEE-----EecCCeEEEEEccCCeEEEEEE---cCCCCeEEEEEeCCCCeEEEee-c--C---------CeEEEEECcCC
Q 016457           97 LHS-----CSSDGTIRAWDTRSFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAG-C--G---------SQIQFWDWRNK  156 (389)
Q Consensus        97 l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~--d---------~~i~iwd~~~~  156 (389)
                      +|+     .|.-+.|+||...-...-..+.   .....=..+.|++-+.-|++-. .  |         .++++.++...
T Consensus       182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~  261 (566)
T KOG2315|consen  182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE  261 (566)
T ss_pred             EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence            665     4556689999876222111111   1123344577887666544422 2  3         47888888744


Q ss_pred             ceeeeeeecccCCeeEEEEecCCCCeEEE--EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          157 KQVACLEESHVEDVTQVHFVPNNQNKVVS--ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      .....+.  ..++|.++.|+|++. .+++  |-.=..+.|||++..       ..+.-.+++-+.+-|+ +.|++++.++
T Consensus       262 s~~V~L~--k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~~-------~v~df~egpRN~~~fn-p~g~ii~lAG  330 (566)
T KOG2315|consen  262 SVSVPLL--KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRGK-------PVFDFPEGPRNTAFFN-PHGNIILLAG  330 (566)
T ss_pred             eEEEecC--CCCCceEEEECCCCC-EEEEEEecccceEEEEcCCCC-------EeEeCCCCCccceEEC-CCCCEEEEee
Confidence            5555554  689999999999996 5444  344567999999932       1222245667788888 7888888887


Q ss_pred             cC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC------CceEEEEEeccCC
Q 016457          235 HI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYGG  304 (389)
Q Consensus       235 ~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~~  304 (389)
                      .+   |.|-+||+.+.+++..+..              ...+-+.|+|||+  |+++++.      |..++||++....
T Consensus       331 FGNL~G~mEvwDv~n~K~i~~~~a--------------~~tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  331 FGNLPGDMEVWDVPNRKLIAKFKA--------------ANTTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             cCCCCCceEEEeccchhhcccccc--------------CCceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecCce
Confidence            75   6999999999888888875              4567789999999  6666543      5779999987543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.8e-12  Score=112.02  Aligned_cols=283  Identities=10%  Similarity=0.060  Sum_probs=190.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce---------------eeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---------------YSGECKGHSSTVNQISFSGPSTPHVLHSCSS  102 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  102 (389)
                      +....|++|+....++|+|+.||.+++..+.+..               .-+++.||...|.-+.|+.+.  +.|-|...
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--ccccccCC
Confidence            4567899999999999999999999999775421               123568999999999999777  78999999


Q ss_pred             CCeEEEEEccCCeEEEEE--EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee-eeeecccCCeeEEEEecCC
Q 016457          103 DGTIRAWDTRSFHEVWSV--TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA-CLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~  179 (389)
                      +|.|.+|-+-.+.-...+  ...++-|.+++|+.+|..+.....||.|.+=.+..++.-. .++   ......+.|+++.
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVLWSEDL  168 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hheccceeecccH
Confidence            999999998776543222  2236789999999999999999999999887765433221 222   2234578999998


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCC---cccee----eeccCCceeeEEEe-------cCCCcEEEEEecCCcEEEEEcC
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDD---DLLES----VINVGTSVGKVGFF-------GETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~----~~~~~~~i~~~~~~-------~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      + .++.+-.+|.+.+||........   .+...    +...+..|..+.|.       ||+...|+++-.+|.+.|-.-.
T Consensus       169 ~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  169 E-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             H-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence            6 78888889999999988542111   11011    11112235555553       4677789999999988887655


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc---------eEEEEEeccCCccccCCCeEEEe
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG---------TVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg---------~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      +......+..             .-.+....|+++|.  +|+.++.+.         .|.+|..-.       ..+..+.
T Consensus       248 ND~~Pvv~dt-------------gm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlk  305 (1189)
T KOG2041|consen  248 NDPEPVVVDT-------------GMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLK  305 (1189)
T ss_pred             CCCCCeEEec-------------ccEeecceecCCCc--EEEEccCcccccCccccceEEEeccch-------hheEEEe
Confidence            4433333332             25688899999998  777776542         455554332       2245554


Q ss_pred             cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                       .....|+++         +|-..|-.++-+- |+.|.+=++.
T Consensus       306 -vpg~~It~l---------sWEg~gLriA~Av-dsfiyfanIR  337 (1189)
T KOG2041|consen  306 -VPGSCITGL---------SWEGTGLRIAIAV-DSFIYFANIR  337 (1189)
T ss_pred             -cCCceeeee---------EEcCCceEEEEEe-cceEEEEeec
Confidence             556677777         4444444444332 4444444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.50  E-value=2e-10  Score=101.58  Aligned_cols=259  Identities=14%  Similarity=0.107  Sum_probs=160.8

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe-
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI-  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-  127 (389)
                      ++..+++++.++.+..+|..+|+.+...... ..+.+.-...+   ..++.++.++.|..||.++++.+..++.....+ 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~---~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVAN---GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEEC---CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence            4567888888999999999999988776532 22222111113   367778889999999999999988876543221 


Q ss_pred             ----EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC---C------e-eEEEEecCCCCeEEEEeCCCcEE
Q 016457          128 ----FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE---D------V-TQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       128 ----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                          .+....  ++.++++..++.+..+|+++++.+.+.......   .      + .+..+.  + ..+++++.+|.++
T Consensus       180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~  254 (377)
T TIGR03300       180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQGRVA  254 (377)
T ss_pred             ecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcCCEEE
Confidence                111222  356777777899999999999877654311110   0      0 111122  3 2777788899999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      .||..++..    +-... .. ........   +..+++++.+|.+..+|..+++.+-......          . ....
T Consensus       255 a~d~~tG~~----~W~~~-~~-~~~~p~~~---~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~----------~-~~~s  314 (377)
T TIGR03300       255 ALDLRSGRV----LWKRD-AS-SYQGPAVD---DNRLYVTDADGVVVALDRRSGSELWKNDELK----------Y-RQLT  314 (377)
T ss_pred             EEECCCCcE----EEeec-cC-CccCceEe---CCEEEEECCCCeEEEEECCCCcEEEcccccc----------C-Cccc
Confidence            999986631    11111 11 12222332   3477888899999999999998775543211          0 1111


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      ....  .++  .|++++.+|.|+++|..+++.      +..+. .+...+..-         -.-.+++ |+.++.||.|
T Consensus       315 sp~i--~g~--~l~~~~~~G~l~~~d~~tG~~------~~~~~-~~~~~~~~s---------p~~~~~~-l~v~~~dG~l  373 (377)
T TIGR03300       315 APAV--VGG--YLVVGDFEGYLHWLSREDGSF------VARLK-TDGSGIASP---------PVVVGDG-LLVQTRDGDL  373 (377)
T ss_pred             cCEE--ECC--EEEEEeCCCEEEEEECCCCCE------EEEEE-cCCCccccC---------CEEECCE-EEEEeCCceE
Confidence            1111  245  677888999999999998876      55554 333222222         1122333 6788889999


Q ss_pred             EEEe
Q 016457          354 CCWL  357 (389)
Q Consensus       354 ~iW~  357 (389)
                      ..+.
T Consensus       374 ~~~~  377 (377)
T TIGR03300       374 YAFR  377 (377)
T ss_pred             EEeC
Confidence            8763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=2.8e-11  Score=104.30  Aligned_cols=191  Identities=11%  Similarity=0.147  Sum_probs=151.3

Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCceeeeeecC---CCCcEEEEEEe------C------------CCCCCEEEEEecCCe
Q 016457           47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG---HSSTVNQISFS------G------------PSTPHVLHSCSSDGT  105 (389)
Q Consensus        47 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~~------~------------~~~~~~l~s~~~dg~  105 (389)
                      .|...++|....||.+++|+..+++....|..   -++..++..|.      |            .+....++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567999999999999999999887776643   23344444443      1            011146888889999


Q ss_pred             EEEEEccCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          106 IRAWDTRSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      |.+|++..++....+.  .|.+.|+++.++.+-..+.+++.|+.+..|+......+.... +.+..+.+++.+|++. .+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~-~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGK-IL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCC-EE
Confidence            9999999999988887  468899999999888899999999999999999988888887 7788899999999996 88


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC-----CcEEEEE-ecCCcEEEEEcCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET-----NKHLWCL-THIETLSIWDWKD  246 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~-~~d~~i~i~d~~~  246 (389)
                      ++++  +.|++||+.++    +.+..+.+|.++|.+++|. ..     |.+++++ ..+.-+.+|-...
T Consensus       160 ~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFT-TLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEE-EeccccccceeeeccccccceeEEEEEc
Confidence            8886  78999999954    7788999999999999997 33     4555543 4455677776543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.49  E-value=1.5e-10  Score=98.18  Aligned_cols=293  Identities=9%  Similarity=-0.000  Sum_probs=192.4

Q ss_pred             CeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCC---------------eEEEEeCCCceeeeeecCCCCc--
Q 016457           21 NSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTN---------------VVKLYSPVTGQYSGECKGHSST--   82 (389)
Q Consensus        21 ~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iw~~~~~~~~~~~~~~~~~--   82 (389)
                      .-|.+|.....-+...- ...|..+.|+|.+++|.+=...+               .+.+||..+|.++..+.+...+  
T Consensus        53 ~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~  132 (561)
T COG5354          53 AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL  132 (561)
T ss_pred             cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc
Confidence            45777765432222222 56789999999999999876543               4999999999999998876655  


Q ss_pred             EE-EEEEeCCCCCCEEEEEecCCeEEEEEccCCeE----EEEEEcCCCCeEEEEEeCCCCe--EEE-----eecCCeEEE
Q 016457           83 VN-QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE----VWSVTAGSQEIFCFSFGGSTDY--LLA-----AGCGSQIQF  150 (389)
Q Consensus        83 v~-~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~--l~~-----~~~d~~i~i  150 (389)
                      .+ -+.|+.+.  .++|-. ....+.|+++ ++..    ...++  ...|....|+|.++.  |+.     .+..+.+++
T Consensus       133 ~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i  206 (561)
T COG5354         133 GWPVLKFSIDD--KYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRI  206 (561)
T ss_pred             ccceeeeeecc--hhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEE
Confidence            44 67888777  465544 3446999997 3322    12222  367888889986432  222     234789999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE-e----------CCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA-S----------VDGLICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                      |.+..+..+.+.. -....-..+.|++.|. .++.- -          ....+++++++..     .+.......++|..
T Consensus       207 ~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-----~i~V~~~~~~pVhd  279 (561)
T COG5354         207 LSIPKNSVLVTKN-LFKVSGVQLKWQVLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITER-----SIPVEKDLKDPVHD  279 (561)
T ss_pred             EEccCCCeeeeee-eEeecccEEEEecCCc-eEEEEEEEeeecccceeccceEEEEeeccc-----ccceecccccccee
Confidence            9998777665544 2334445788898886 44332 1          1345788888721     12222256789999


Q ss_pred             EEEecCCCcEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC---ceE
Q 016457          220 VGFFGETNKHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA---GTV  295 (389)
Q Consensus       220 ~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d---g~i  295 (389)
                      .+|.|....+.+ +|-.+-.+.++|++.. ....+..              ..=..+.|+|.++  |++.++.|   |.|
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--------------~~rNT~~fsp~~r--~il~agF~nl~gni  342 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE--------------QKRNTIFFSPHER--YILFAGFDNLQGNI  342 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc-eEEecCC--------------cccccccccCccc--EEEEecCCccccce
Confidence            999955444433 3357789999999855 4444443              4446678999988  77765554   789


Q ss_pred             EEEEeccCCccccCCCeE-EEecccceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEeccCC
Q 016457          296 GYFPVNYGGAATIGPPEA-VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSDDS  361 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~~~  361 (389)
                      -+||......      +. .+. +-   -.+.|        .|+||++++.+..      .|..|.||++...
T Consensus       343 ~i~~~~~rf~------~~~~~~-~~---n~s~~--------~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         343 EIFDPAGRFK------VAGAFN-GL---NTSYC--------DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEeccCCceE------EEEEee-cC---CceEe--------eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            9999876433      11 121 11   12222        8999999988874      6888999999865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.45  E-value=2.3e-10  Score=101.11  Aligned_cols=265  Identities=10%  Similarity=0.049  Sum_probs=165.9

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      +..+++++.++.|.-+|..+|+.+..+.-..........  ++  ..++.++.++.+..+|..+|+.+...... ..+.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~  139 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLS  139 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeec
Confidence            568888888999999999999988776543322222332  33  47888889999999999999998877654 23322


Q ss_pred             -EEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457          130 -FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----TQVHFVPNNQNKVVSASVDGLICTFDTGGDIND  203 (389)
Q Consensus       130 -~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (389)
                       ...  .++.+++++.++.|..||.++++.+.++. .....+     .+....  +. .++.+..++.+..+|.+++...
T Consensus       140 ~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       140 PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEe
Confidence             222  35678888889999999999999887765 222111     111222  22 6778888899999999876421


Q ss_pred             CccceeeeccCCc------e-eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          204 DDLLESVINVGTS------V-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       204 ~~~~~~~~~~~~~------i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      .............      + ....+.   +..+++++.++.++.||..+++.+-.....             . .....
T Consensus       214 W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-------------~-~~~p~  276 (377)
T TIGR03300       214 WEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-------------S-YQGPA  276 (377)
T ss_pred             eeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeeccC-------------C-ccCce
Confidence            1100000000000      1 111122   347888888999999999999877655421             1 11111


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                        ..++  .++.++.+|.|+.+|..+++.      +..............           ...+..|++++.||.|+++
T Consensus       277 --~~~~--~vyv~~~~G~l~~~d~~tG~~------~W~~~~~~~~~~ssp-----------~i~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       277 --VDDN--RLYVTDADGVVVALDRRSGSE------LWKNDELKYRQLTAP-----------AVVGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             --EeCC--EEEEECCCCeEEEEECCCCcE------EEccccccCCccccC-----------EEECCEEEEEeCCCEEEEE
Confidence              2345  556777899999999988765      222210000001111           1134567888999999999


Q ss_pred             eccCCcc
Q 016457          357 LSDDSSE  363 (389)
Q Consensus       357 ~~~~~~~  363 (389)
                      +..++..
T Consensus       336 d~~tG~~  342 (377)
T TIGR03300       336 SREDGSF  342 (377)
T ss_pred             ECCCCCE
Confidence            9877643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.3e-10  Score=101.78  Aligned_cols=223  Identities=11%  Similarity=0.001  Sum_probs=134.0

Q ss_pred             CCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEE---EEecC--CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           20 VNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMA---VSLST--NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        20 ~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~---~~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      ...|.+.|.. ...+.+.. ...+..-+|+|||+.++   +...+  ..|.+.++.+++.... ....+.....+|+|||
T Consensus       164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG  242 (428)
T PRK01029        164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK  242 (428)
T ss_pred             cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence            3466676664 22333333 55667789999997532   33333  3688888887754332 2234445678999999


Q ss_pred             CCCEEEEEe-cCC----eEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEE--ECcC-Cceee
Q 016457           93 TPHVLHSCS-SDG----TIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFW--DWRN-KKQVA  160 (389)
Q Consensus        93 ~~~~l~s~~-~dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw--d~~~-~~~~~  160 (389)
                        +.|+..+ .+|    .+.+|++..+   ................+|+|++..|+..+. +|...+|  ++.. +....
T Consensus       243 --~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        243 --KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             --CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence              5666543 223    3455776642   333333332234567899999998887764 5654444  4432 23344


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec--
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH--  235 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  235 (389)
                      .+. .+...+....|+|+|+ .|+..+.+   ..|.+||+.++.     ...+......+....|+ ++++.|+..+.  
T Consensus       321 ~lt-~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~-----~~~Lt~~~~~~~~p~wS-pDG~~L~f~~~~~  392 (428)
T PRK01029        321 LLT-KKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGR-----DYQLTTSPENKESPSWA-IDSLHLVYSAGNS  392 (428)
T ss_pred             Eec-cCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCC-----eEEccCCCCCccceEEC-CCCCEEEEEECCC
Confidence            444 3445677899999996 66655433   368999998653     22232233456778898 66776664433  


Q ss_pred             -CCcEEEEEcCCCceeEEe
Q 016457          236 -IETLSIWDWKDGQNVASF  253 (389)
Q Consensus       236 -d~~i~i~d~~~~~~~~~~  253 (389)
                       ...|.++|+..++.....
T Consensus       393 g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        393 NESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCceEEEEECCCCCEEEee
Confidence             347888898877654433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.4e-10  Score=99.35  Aligned_cols=282  Identities=12%  Similarity=0.116  Sum_probs=178.5

Q ss_pred             CcceEEEeecCCCCeEEEEecC-----------CeEEEEeCCCceeeeeecCC--CCcE-EEEEEeCCCCCCEEEEEecC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLST-----------NVVKLYSPVTGQYSGECKGH--SSTV-NQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~--~~~v-~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ...|.-+.|||..++|++-+..           ..++|||+.+|.....+...  ...+ .-..|+.++  +++|--..+
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd--Ky~Arm~~~  326 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD--KYFARMTGN  326 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC--ceeEEeccc
Confidence            4568889999999999987641           47999999999988887652  2222 345899998  688877665


Q ss_pred             CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457          104 GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  178 (389)
                       +|.||+..+..++-.-...-..|....|+|.+..|+-=.-     -..+.+-.+.+++.+++.. -+.-.=..|.|..+
T Consensus       327 -sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~  404 (698)
T KOG2314|consen  327 -SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKS  404 (698)
T ss_pred             -eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccC
Confidence             6999998765444322223577889999988665554322     1356666666666665554 34333344666677


Q ss_pred             CCCeEEEEe----------CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecC--CcEEEEEcC
Q 016457          179 NQNKVVSAS----------VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THI--ETLSIWDWK  245 (389)
Q Consensus       179 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d--~~i~i~d~~  245 (389)
                      |. +|+.--          .=..+-|+.++.    .............|...+|-| .|+.+++. +.+  .++.+|.++
T Consensus       405 gd-yLcvkvdR~tK~~~~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  405 GD-YLCVKVDRHTKSKVKGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             Cc-EEEEEEEeeccccccceEeeEEEEEeec----cCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEee
Confidence            75 554321          112355666662    222333334567889999995 45444443 333  478888877


Q ss_pred             C-C---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe---cCCceEEEEEeccCCccccCCCeEEEecc
Q 016457          246 D-G---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG---TGAGTVGYFPVNYGGAATIGPPEAVLVGG  318 (389)
Q Consensus       246 ~-~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g---~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  318 (389)
                      + .   +.+..+..              ...+.+.|+|.|+  +++.+   |..|.+.++|..-......    . . ..
T Consensus       479 ~~~~~~~lVk~~dk--------------~~~N~vfwsPkG~--fvvva~l~s~~g~l~F~D~~~a~~k~~----~-~-~e  536 (698)
T KOG2314|consen  479 TNIKKPSLVKELDK--------------KFANTVFWSPKGR--FVVVAALVSRRGDLEFYDTDYADLKDT----A-S-PE  536 (698)
T ss_pred             cCCCchhhhhhhcc--------------cccceEEEcCCCc--EEEEEEecccccceEEEecchhhhhhc----c-C-cc
Confidence            3 2   22333332              5577899999999  65543   4578999999884322000    0 0 01


Q ss_pred             cceeeeeccCCCcccCCCCCCCceeEEEec------CCCeEEEEeccCC
Q 016457          319 HTAVVRSVLPMPSVQGRPAQSHGIFGWTGG------EDGRLCCWLSDDS  361 (389)
Q Consensus       319 h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~------~dg~v~iW~~~~~  361 (389)
                      | ...+.+         .|+|.|+|++|++      .|.--++|++...
T Consensus       537 h-~~at~v---------eWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  537 H-FAATEV---------EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             c-cccccc---------eECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            2 122444         8999999999987      4556678888765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.8e-10  Score=98.67  Aligned_cols=281  Identities=12%  Similarity=0.113  Sum_probs=177.4

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-----------CCeEEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-----------DGTIRAW  109 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----------dg~i~iw  109 (389)
                      =+-+.|||.|.+|++--..| |.+|--++-..++.+. |. .|.-+.|+|..  ++|+|-+.           ...++||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~E--kYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNE--KYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCcc--ceEEEecCCccccCcccCCCceEEEE
Confidence            34678999999999987665 8999866656666665 65 58889999999  79998552           2579999


Q ss_pred             EccCCeEEEEEEcC--CCCeE-EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          110 DTRSFHEVWSVTAG--SQEIF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       110 d~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      |+.+|...+.|...  ...++ -+.||.++++++.-.. ..|.||+..+..++..-. -.-..|....|+|.+ ++||-=
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~-~llAYw  364 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTS-NLLAYW  364 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCc-ceEEEE
Confidence            99999998888763  33333 3578866666655444 789999977654432222 234568888999987 366643


Q ss_pred             eCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec----------CCcEEEEEcCCCceeE
Q 016457          187 SVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH----------IETLSIWDWKDGQNVA  251 (389)
Q Consensus       187 ~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~  251 (389)
                      +..     ..+.+..+.++    ..++...-++-.=..+-|- .+|++|+.--.          -..+.|+.++......
T Consensus       365 tpe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             cccccCCcceEEEEecCcc----ceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            321     12344444322    1222222222222334454 56666654321          1235555555443322


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC-ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMP  330 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  330 (389)
                      ....            -...|...+|-|.|+++.+++|-.. .++.+|.+++...  ...++..+..   ...+.+    
T Consensus       440 e~ve------------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~~~lVk~~dk---~~~N~v----  498 (698)
T KOG2314|consen  440 EVVE------------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--KPSLVKELDK---KFANTV----  498 (698)
T ss_pred             eeee------------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC--chhhhhhhcc---cccceE----
Confidence            2222            2378999999999998777776443 5789998884221  1112333331   333556    


Q ss_pred             cccCCCCCCCceeEEEe---cCCCeEEEEeccC
Q 016457          331 SVQGRPAQSHGIFGWTG---GEDGRLCCWLSDD  360 (389)
Q Consensus       331 ~~~~~~~s~~~~~l~s~---~~dg~v~iW~~~~  360 (389)
                           .|+|.|++++.+   |..|.+.++|.+-
T Consensus       499 -----fwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  499 -----FWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             -----EEcCCCcEEEEEEecccccceEEEecch
Confidence                 899999998886   4678999999984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.5e-10  Score=100.62  Aligned_cols=224  Identities=8%  Similarity=-0.033  Sum_probs=133.2

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.+.|.+.++. ..+......+..-+|+|++....+ ++...+|  .|.+.++.+++...... ........+|+|+++
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence            677778765443 334444556678899999841113 2444444  57777887775443322 344556789999999


Q ss_pred             eEEEeec-CC----eEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEE--ecCCCCCCCccc
Q 016457          138 YLLAAGC-GS----QIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTF--DTGGDINDDDLL  207 (389)
Q Consensus       138 ~l~~~~~-d~----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~  207 (389)
                      .|+..+. +|    .+..|++..+  .....+...........+|+|+|+ .|+..+ .+|...+|  ++....   ...
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly~~~~~~~g---~~~  319 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIYIMQIDPEG---QSP  319 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECcccc---cce
Confidence            9887764 22    3444777653  122333312223456789999996 665554 46655555  443211   112


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                      ..+......+....|+ ++++.|+..+.+   ..|.+||+.+++.......             ...+....|+|||+.+
T Consensus       320 ~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-------------~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        320 RLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-------------PENKESPSWAIDSLHL  385 (428)
T ss_pred             EEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-------------CCCccceEECCCCCEE
Confidence            3333344566788999 677777665543   3799999988865433221             1345668899999843


Q ss_pred             EEEEecC--CceEEEEEeccCCc
Q 016457          285 WVIGGTG--AGTVGYFPVNYGGA  305 (389)
Q Consensus       285 ~l~~g~~--dg~i~i~~~~~~~~  305 (389)
                      ++ +...  ...|+++++.+++.
T Consensus       386 ~f-~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        386 VY-SAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EE-EECCCCCceEEEEECCCCCE
Confidence            32 3322  35788888887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=6.9e-11  Score=105.13  Aligned_cols=248  Identities=12%  Similarity=0.042  Sum_probs=183.0

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC----------CCEEEEEecCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST----------PHVLHSCSSDGTIRA  108 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~----------~~~l~s~~~dg~i~i  108 (389)
                      ..-.++.|+|.| +||.|+ ...|.+-|..+.+.++.+.-|...|+.+.|.|...          .-+|+++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            335678899988 888887 56799999999999999999999999999988432          136788888999999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeCC---C-CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGGS---T-DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      ||...+..+..++.+..++..++|-+.   . ..+++-.....|.+|+..+|+...... .......|+.+.|-....+.
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEE
Confidence            999999998899999999999998753   2 346666668899999999999998887 55567788999998766677


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeee---ccCC-------------------------ceeeEEEecCCCcEEEEEecC
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVI---NVGT-------------------------SVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~-------------------------~i~~~~~~~~~~~~l~~~~~d  236 (389)
                      .-+..|.+.+-+.-...+...+.+.+.   .|.+                         ....++|+| .-+.++.....
T Consensus       173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~p  251 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFP  251 (1062)
T ss_pred             EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEec
Confidence            777788887777653322211111111   1110                         012345664 33344445566


Q ss_pred             CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ..+.++|++-..++....-.+            +.+.-+.+-|++++-.|+++-.||.+.+|--+.
T Consensus       252 rellv~dle~~~~l~vvpier------------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIER------------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEcchhhceeEEEEecc------------CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            789999999888887776543            555566777777665889999999999996554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.39  E-value=1.2e-09  Score=105.06  Aligned_cols=299  Identities=15%  Similarity=0.071  Sum_probs=188.2

Q ss_pred             cCCCCeEEEE----ecCceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC---------------C------
Q 016457           17 CDNVNSIKRF----GLKNSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV---------------T------   69 (389)
Q Consensus        17 ~~~~~~i~~w----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~---------------~------   69 (389)
                      +..+|.|.+.    +.........|  +.+|.+++||||+..|+..+.++++.+.+-.               .      
T Consensus        93 ~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV  172 (928)
T PF04762_consen   93 ALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV  172 (928)
T ss_pred             EECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence            4456777777    55555555555  8899999999999999999999988886421               0      


Q ss_pred             --ceeeeeecC------------------------CCCcEEEEEEeCCCCCCEEEEEec---C---CeEEEEEccCCeEE
Q 016457           70 --GQYSGECKG------------------------HSSTVNQISFSGPSTPHVLHSCSS---D---GTIRAWDTRSFHEV  117 (389)
Q Consensus        70 --~~~~~~~~~------------------------~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~  117 (389)
                        |+....|.|                        +.+.-..|+|..||  .++|+.+.   .   ..+|||+-+ |...
T Consensus       173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG--~yFAVss~~~~~~~~R~iRVy~Re-G~L~  249 (928)
T PF04762_consen  173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG--EYFAVSSVEPETGSRRVIRVYSRE-GELQ  249 (928)
T ss_pred             ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC--cEEEEEEEEcCCCceeEEEEECCC-ceEE
Confidence              011111111                        22244578899999  79888764   2   479999954 6654


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeee---cccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEE---SHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      .+-+.-.+--.+++|.|.|+.++++-.   ...|.+|. ++|-.-..|..   .....|..|.|++++. .|+....|. 
T Consensus       250 stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-  326 (928)
T PF04762_consen  250 STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-  326 (928)
T ss_pred             eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-
Confidence            444433344457899999988877765   34677776 45544444431   3456799999999995 888877555 


Q ss_pred             EEEEecCCCCCCCccceeeec--cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          192 ICTFDTGGDINDDDLLESVIN--VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      |.+|-..+-   ...++....  ....+..+.|+|.+...|...+.+|.+..++..-.     ..               
T Consensus       327 vqLWt~~NY---HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~---------------  383 (928)
T PF04762_consen  327 VQLWTRSNY---HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VS---------------  383 (928)
T ss_pred             ceEEEeeCC---EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EE---------------
Confidence            999988732   112222222  23345569999877778888888788877765210     00               


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                         .+-...|++.. .++.- ....+.+-.+...-.   .+|.....-.-...|.++         +|++++..+++-..
T Consensus       384 ---~s~~~~~~D~g-~vaVI-DG~~lllTpf~~a~V---PPPMs~~~l~~~~~v~~v---------af~~~~~~~avl~~  446 (928)
T PF04762_consen  384 ---RSPGSSPNDNG-TVAVI-DGNKLLLTPFRRAVV---PPPMSSYELELPSPVNDV---------AFSPSNSRFAVLTS  446 (928)
T ss_pred             ---ecCCCCccCce-EEEEE-eCCeEEEecccccCC---CchHhceEEcCCCCcEEE---------EEeCCCCeEEEEEC
Confidence               01112233332 12222 233566766665443   233322221234677888         99999887888889


Q ss_pred             CCeEEEEeccCC
Q 016457          350 DGRLCCWLSDDS  361 (389)
Q Consensus       350 dg~v~iW~~~~~  361 (389)
                      ||.|.+|..+..
T Consensus       447 d~~l~~~~~~~~  458 (928)
T PF04762_consen  447 DGSLSIYEWDLK  458 (928)
T ss_pred             CCCEEEEEecCC
Confidence            999999997654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=5.4e-12  Score=107.98  Aligned_cols=211  Identities=16%  Similarity=0.176  Sum_probs=149.1

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+.| ...|..++--.+.+.+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|..+.  .+++++  ||.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~Sc--D~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RSIASC--DGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ceeeec--cCc
Confidence            3445 66777777666667899999999999999853       23566788999999999999877  566654  788


Q ss_pred             EEEEEccCCeEEEEEEcC--CCCeEEEEEeCC--CCeEEEeec-CCeEEEEECcCCceeeeee----ecccCCeeEEEEe
Q 016457          106 IRAWDTRSFHEVWSVTAG--SQEIFCFSFGGS--TDYLLAAGC-GSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFV  176 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~  176 (389)
                      |.+||.--++++..+...  .+.+..+..-|+  ...+++++. ..+|+++|.+..+..-.++    .+....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999999888776644321  233444444333  334444433 8899999999887665554    1334568999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE-EEcCCCceeEEeec
Q 016457          177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI-WDWKDGQNVASFEN  255 (389)
Q Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~  255 (389)
                      +.| |+++++-.+|.|.+.|.++++    .+......+-....++-  |..+.|+....|.++.+ |...++....+...
T Consensus       886 ~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaa--psdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  886 DKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             cCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            999 599999999999999999763    33333333333333333  55677888888888888 88777765555443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.36  E-value=5.1e-10  Score=95.03  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=181.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-------------
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-------------  104 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-------------  104 (389)
                      .-++..++|||.|.+|++.... .|.+|.-..+..+..+. | ..|..+.|+|++  .+|.+=+...             
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~--kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNE--KYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCccc--ceeeeeccCCccChhhccCCccc
Confidence            6778899999999999988755 49999977766555554 3 468999999999  7998865433             


Q ss_pred             --eEEEEEccCCeEEEEEEcCCCC--eE-EEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeecccCCeeEEEEecC
Q 016457          105 --TIRAWDTRSFHEVWSVTAGSQE--IF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       105 --~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~  178 (389)
                        .+.+||+.++..+..+.....+  .+ -+.|+-++.+.+-. ....++|+++ +.... ..+..-....|....|+|.
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence              4899999999999999876555  44 56777555554433 3468999997 33221 1111011355788888887


Q ss_pred             CCC-eEEE-----EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-----------cCCcEEE
Q 016457          179 NQN-KVVS-----ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-----------HIETLSI  241 (389)
Q Consensus       179 ~~~-~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~d~~i~i  241 (389)
                      +.. .|+.     .+..+.+++|.+..+.    .+....-.+-.-..+.|. ..+++|++-.           ....++|
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s----~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNS----VLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCC----eeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEE
Confidence            421 2333     3457788888887321    121111112223456676 5555554321           1246777


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA  321 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~  321 (389)
                      +++....+.-.. .            -.++|.+.+|.|.++++-+++|-.+..+.++|+... +      ...++   ..
T Consensus       260 ~~~~e~~i~V~~-~------------~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l------~~~~P---e~  316 (561)
T COG5354         260 LRITERSIPVEK-D------------LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L------RFYFP---EQ  316 (561)
T ss_pred             Eeecccccceec-c------------ccccceeeeecccCCceeEEecccccceeecccccc-e------EEecC---Cc
Confidence            877633322222 2            348999999999999988889899999999999864 2      12222   12


Q ss_pred             eeeeccCCCcccCCCCCCCceeEEEecCC---CeEEEEeccCC
Q 016457          322 VVRSVLPMPSVQGRPAQSHGIFGWTGGED---GRLCCWLSDDS  361 (389)
Q Consensus       322 ~v~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~v~iW~~~~~  361 (389)
                      .=+.+         .|||.+++++.+|-|   |.+-+|+....
T Consensus       317 ~rNT~---------~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         317 KRNTI---------FFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccccc---------cccCcccEEEEecCCccccceEEeccCCc
Confidence            22333         677888877776643   46777777655

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.36  E-value=1.5e-08  Score=83.93  Aligned_cols=223  Identities=15%  Similarity=0.093  Sum_probs=146.4

Q ss_pred             EEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe-CCCCCCEEEEEecCCeEEEEEccCCeEEEEE
Q 016457           43 EIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS-GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        43 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  120 (389)
                      +..|.+ ++.++++-...+.|..|+..+++... +....  ...+++. +++   .|+.+...+ +.++|+.+++....+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g---~l~v~~~~~-~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG---RLYVADSGG-IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS---EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC---EEEEEEcCc-eEEEecCCCcEEEEe
Confidence            567888 66677776678999999998775543 22222  6677777 555   566666655 566699888655444


Q ss_pred             Ec-----CCCCeEEEEEeCCCCeEEEeecC--------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          121 TA-----GSQEIFCFSFGGSTDYLLAAGCG--------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       121 ~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      ..     .....+.+++.|++...++....        |.|..++.. ++......  .-...+.|+|+|+++.++++-+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccc
Confidence            43     34668899999888755554432        557777776 44433333  3456789999999964455677


Q ss_pred             CCCcEEEEecCCCCCCCccceee---eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          188 VDGLICTFDTGGDINDDDLLESV---INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      ..+.|..|++............+   .........+++. .++++.++....+.|.+++.. ++.+..+...        
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--------  223 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPD-GKLLREIELP--------  223 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--------
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--------
Confidence            78899999997432111111222   1122347889998 678877777788999999987 8888877752        


Q ss_pred             cCCCCCceeeecc-cCCCCeEEEEEe
Q 016457          265 TLDDVDYFVDCHY-PGEGENLWVIGG  289 (389)
Q Consensus       265 ~~~~~~~i~~~~~-~~~~~~~~l~~g  289 (389)
                          ...+++++| -++.+.+|+.++
T Consensus       224 ----~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  224 ----VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ----SSSEEEEEEESTTSSEEEEEEB
T ss_pred             ----CCCEEEEEEECCCCCEEEEEeC
Confidence                257889999 466676666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2e-08  Score=82.19  Aligned_cols=270  Identities=10%  Similarity=0.113  Sum_probs=174.0

Q ss_pred             CCeEEEEecCc------eeeeeecCcceEEEeecCCCCeEEEEecC---CeEEEEeCCC--ceeee--eecCCCCcEEEE
Q 016457           20 VNSIKRFGLKN------SIQTNFGDDYVFEIVPKNDWSLMAVSLST---NVVKLYSPVT--GQYSG--ECKGHSSTVNQI   86 (389)
Q Consensus        20 ~~~i~~w~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~--~~~~~--~~~~~~~~v~~i   86 (389)
                      .+-|++|++.+      .+......+.++-|+|+|+++.|.++-.+   |.|.-|.++.  |++..  .......+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56689999863      22222237788899999999999988664   6777777664  54322  222222334789


Q ss_pred             EEeCCCCCCEEEEEe-cCCeEEEEEccC-CeEEE--EEEcCCCC----------eEEEEEeCCCCeEEEeec-CCeEEEE
Q 016457           87 SFSGPSTPHVLHSCS-SDGTIRAWDTRS-FHEVW--SVTAGSQE----------IFCFSFGGSTDYLLAAGC-GSQIQFW  151 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iw  151 (389)
                      ++++++  ++++++. .-|.|.++-++. |....  .+..|.+.          +.+..+.|+++++++..- --.|.+|
T Consensus        95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            999998  6888776 457899998865 43221  12223333          788899999999998876 4689999


Q ss_pred             ECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee------ccCCceeeEEEe
Q 016457          152 DWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFF  223 (389)
Q Consensus       152 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~  223 (389)
                      ++..++....-.  -.....-+.|.|+|+++...++.--+++|.+|...........+..+.      ........|.++
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            999775432111  123456789999999984455555699999999986422222222221      123456778888


Q ss_pred             cCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC-ceEEEEEec
Q 016457          224 GETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-GTVGYFPVN  301 (389)
Q Consensus       224 ~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-g~i~i~~~~  301 (389)
                       ++|++|.++.. ...|.+|.+....-...+.....        .+........+++.++  +|+++..+ ..|.+|.++
T Consensus       253 -~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~--------teg~~PR~F~i~~~g~--~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         253 -PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP--------TEGQFPRDFNINPSGR--FLIAANQKSDNITVFERD  321 (346)
T ss_pred             -CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec--------cCCcCCccceeCCCCC--EEEEEccCCCcEEEEEEc
Confidence             78888887754 34788888764422222221110        0334467889999988  66666554 578888775


Q ss_pred             c
Q 016457          302 Y  302 (389)
Q Consensus       302 ~  302 (389)
                      .
T Consensus       322 ~  322 (346)
T COG2706         322 K  322 (346)
T ss_pred             C
Confidence            4

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=4.8e-09  Score=102.92  Aligned_cols=257  Identities=10%  Similarity=0.094  Sum_probs=158.0

Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc-CC-------------CCeEEEEEeCCCCeEEEeec-CCeE
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA-GS-------------QEIFCFSFGGSTDYLLAAGC-GSQI  148 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~l~~~~~-d~~i  148 (389)
                      ..+++.+.+. .++++-..++.|++||.. +..+..+.. ..             .....++++++++.++++.. ++.|
T Consensus       571 ~gvavd~~~g-~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNN-RLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCC-eEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            3577876532 577777788899999975 444444432 11             23578999988887777665 6789


Q ss_pred             EEEECcCCceeeeeee-cc---------------cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec
Q 016457          149 QFWDWRNKKQVACLEE-SH---------------VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~-~~---------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      +.+|+.++. +.++.. +.               -.....++++|++..++++.+.++.|++||..++.     +..+.+
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-----v~~~~G  722 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-----TRVFSG  722 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-----EEEEec
Confidence            999987654 333320 00               11246799999554577888888999999987542     111100


Q ss_pred             ---------------cCCceeeEEEecCCCc-EEEEEecCCcEEEEEcCCCceeEEeecccccccC--Ccc-------CC
Q 016457          213 ---------------VGTSVGKVGFFGETNK-HLWCLTHIETLSIWDWKDGQNVASFENARSLASD--SWT-------LD  267 (389)
Q Consensus       213 ---------------~~~~i~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~-------~~  267 (389)
                                     .-.....++++ +++. ++++.+.++.|++||+.++.......+.......  .+.       ..
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence                           11245678999 5555 5666667789999999876532211110000000  000       00


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-------eeeeccCCCcccCCCCCCC
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-------VVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~s~~  340 (389)
                      .-.....++++++|+  ++++-+.++.|++||..++..       ..+. +...       ....-...+..+  +++++
T Consensus       802 ~l~~P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v-------~tia-G~G~~G~~dG~~~~a~l~~P~GI--avd~d  869 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRV-------TTLA-GTGKAGFKDGKALKAQLSEPAGL--ALGEN  869 (1057)
T ss_pred             hccCCceeeEeCCCc--EEEEECCCCEEEEEECCCCeE-------EEEe-ccCCcCCCCCcccccccCCceEE--EEeCC
Confidence            112345788999987  677888899999999987664       2222 1110       000011112222  88999


Q ss_pred             ceeEEEecCCCeEEEEeccCC
Q 016457          341 GIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |+.+++-+.++.|++|+++..
T Consensus       870 G~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        870 GRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCEEEEECCCCEEEEEECCCC
Confidence            999999999999999999875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.34  E-value=2.2e-09  Score=83.96  Aligned_cols=245  Identities=10%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceee-eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYS-GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  127 (389)
                      ...+||.|+..|...+|...+.+.. +....|...|+-+.-..+.. --+..++.|.++++.++..+.....+....-..
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~-~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK-FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc-cceeeccCCcceeEEEEecCcccceeeccccce
Confidence            3458999999999999998865433 33344555443332222222 346667788899999887554433333222348


Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeee-eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC-C
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVAC-LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND-D  204 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~  204 (389)
                      .++++++++..+.+.+....|..|.+... +.+.. ......+.-.+..|+.... .+|+++.||++.|||+|..... .
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchh
Confidence            89999999999999999999999988643 33222 2223445567889999885 9999999999999999954311 1


Q ss_pred             ccceeeeccCCceeeEEEecCCC-cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          205 DLLESVINVGTSVGKVGFFGETN-KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                      ........|.+.+..+.|++.+. ++|+..-.-+.+.+.|++++...+.+.......    .......+....|+.++..
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~----~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE----RKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc----ccccccccccccccCCCcc
Confidence            12222344788999999984322 356666667899999999987655544321110    0002234777888888775


Q ss_pred             EEEEEecCCceEEEEEecc
Q 016457          284 LWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~  302 (389)
                      .++.+.  + .+.-|++.+
T Consensus       317 ~~v~~e--~-~~ae~ni~s  332 (344)
T KOG4532|consen  317 NDVKNE--L-QGAEYNILS  332 (344)
T ss_pred             cccccc--h-hhheeeccc
Confidence            443332  2 244555544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=2.9e-11  Score=106.84  Aligned_cols=272  Identities=17%  Similarity=0.228  Sum_probs=185.5

Q ss_pred             ccccCCCCeEEEEecC---ceeeeeec--CcceEEEeecCCC--CeEEEEecCCeEEEEeCCC---ceeeeeecCCCCcE
Q 016457           14 SQSCDNVNSIKRFGLK---NSIQTNFG--DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVT---GQYSGECKGHSSTV   83 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~---~~~~~~~~--~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~v   83 (389)
                      .+.++..| +.+.|+.   ++.+-+.+  .-.|-...|+|..  .+-++......-.+|++..   ......+.+|...|
T Consensus        39 i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsrai  117 (1081)
T KOG0309|consen   39 IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAI  117 (1081)
T ss_pred             hhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccce
Confidence            34444444 3444554   34444554  4456677888754  4556666677788998753   23445677899999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVAC  161 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~  161 (389)
                      +.+-|+|... ..+++++.|-.+..||+++. .++..+..-......++|+-.++.+++.+..+.|.+||++.+. ++..
T Consensus       118 td~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s  196 (1081)
T KOG0309|consen  118 TDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS  196 (1081)
T ss_pred             eccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE
Confidence            9999998764 89999999999999999875 3555555556778889999889999999999999999999764 5667


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc-EEEEEecCCcEE
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK-HLWCLTHIETLS  240 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~  240 (389)
                      ++ +|...|+.++|+..-...+.+.+.|++|+.||......   ..........+|..-.+.|-... ++.-.-.+..+.
T Consensus       197 ~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~---e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~  272 (1081)
T KOG0309|consen  197 LK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT---ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP  272 (1081)
T ss_pred             ec-ccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc---ccceeccccCcceeccccccCceeEeccccCCeeee
Confidence            76 78899999999876545899999999999999984432   22222334455555555432111 111111122333


Q ss_pred             ---------EEEcCC-CceeEEeecccccccCCccCCCCCceeeeccc--------CCCCeEEEEEecCCceEEEEEecc
Q 016457          241 ---------IWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYP--------GEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       241 ---------i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                               .|+..+ .++++.|.+            |.+.|....|-        .+.+.+-|++-+.|..+++|.+..
T Consensus       273 ~~~c~n~d~e~n~~~~~~pVh~F~G------------H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  273 QLRCENSDLEWNVFDLNTPVHTFVG------------HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eccccchhhhhccccCCcceeeecC------------cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                     344333 357788887            55666554443        344556789999999999998875


Q ss_pred             C
Q 016457          303 G  303 (389)
Q Consensus       303 ~  303 (389)
                      .
T Consensus       341 ~  341 (1081)
T KOG0309|consen  341 Q  341 (1081)
T ss_pred             H
Confidence            3

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.33  E-value=7.4e-09  Score=101.62  Aligned_cols=255  Identities=10%  Similarity=0.047  Sum_probs=158.3

Q ss_pred             EEeecCC-CCeEEEEecCCeEEEEeCCCceeeeeecC--------------CCCcEEEEEEeCCCCCCEEEEEe-cCCeE
Q 016457           43 EIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGECKG--------------HSSTVNQISFSGPSTPHVLHSCS-SDGTI  106 (389)
Q Consensus        43 ~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i  106 (389)
                      .++++++ +.++++-..++.|+++|.. ++.+..+.+              +-.....|++.+++  +.|+.+. ..+.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCceE
Confidence            5778875 4455555667899999976 444433322              11235788999877  5555544 45789


Q ss_pred             EEEEccCCeEEEEEEcC-----------------CCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeee-e---
Q 016457          107 RAWDTRSFHEVWSVTAG-----------------SQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLE-E---  164 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-~---  164 (389)
                      +++|+.++. +.++.+.                 -.....++++|.++.++++. .++.|++||..++... .+. .   
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            999987654 3333221                 01346799998666665554 5789999998776432 111 0   


Q ss_pred             ----c------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC---------ccceeeec--------cCCce
Q 016457          165 ----S------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD---------DLLESVIN--------VGTSV  217 (389)
Q Consensus       165 ----~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~~--------~~~~i  217 (389)
                          +      .-.....|+++|++..++++-+.++.|++||+.++....         .....+-.        .-...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                0      112356799999986466667778999999998542100         00000000        01124


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccc-cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARS-LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      ..++++ +++.++++-+.++.|++||..++........... ..........-.....++++++|+  ++++-+.++.|+
T Consensus       807 ~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~--lyVaDt~Nn~Ir  883 (1057)
T PLN02919        807 LGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR--LFVADTNNSLIR  883 (1057)
T ss_pred             ceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC--EEEEECCCCEEE
Confidence            578888 6778888888899999999987765543321100 000000011223567889999997  677888999999


Q ss_pred             EEEeccCCc
Q 016457          297 YFPVNYGGA  305 (389)
Q Consensus       297 i~~~~~~~~  305 (389)
                      +||+.+++.
T Consensus       884 vid~~~~~~  892 (1057)
T PLN02919        884 YLDLNKGEA  892 (1057)
T ss_pred             EEECCCCcc
Confidence            999988754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.33  E-value=7e-11  Score=91.69  Aligned_cols=199  Identities=12%  Similarity=0.131  Sum_probs=125.2

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeee------------eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG------------ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      |+.+.++-+- .|+++..++.+.....-++.+..            .+..|+++-.+=+.+-.+  +-+++++.||.+.+
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC--CceEecCCCceEEE
Confidence            6777776554 66777667666665544433322            222233222222222223  47999999999999


Q ss_pred             EEccCCeE-EEEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCe
Q 016457          109 WDTRSFHE-VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       109 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  182 (389)
                      ++.+.-.. ...+..-...-.+.+....++.+.+++.     -+..+.|+++..+.+..-. .....|++++-+|...++
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~  194 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHL  194 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccE
Confidence            99775211 1111111111112222224455554433     2455666665433222111 123449999999998889


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      +++|+.||.+.+||.+..   ..+...+..|+.++..+-|+|.++..|++++.||.+-.||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999999999999999954   3455666789999999999999999999999999999999764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.31  E-value=4.9e-08  Score=82.69  Aligned_cols=172  Identities=15%  Similarity=0.092  Sum_probs=125.8

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-eEEEEEccCCeEEEEEEcCCCCe
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-TIRAWDTRSFHEVWSVTAGSQEI  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v  127 (389)
                      +|.+++..+ .|...|.+...+-.++.  +|...|.-..+..++  +-++.|..|| .+-|+|.++++.. .+...-+.|
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I  404 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNI  404 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEE-EeeCCccce
Confidence            567888777 67788887665544332  467779888888777  5888899998 8999999877654 445556899


Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC----cEEEEecCCCCCC
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG----LICTFDTGGDIND  203 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~  203 (389)
                      .++..+|+++.++++.....|.+.|+.++.....-+ ...+-|+.++|+|+++ ++|-+--+|    .|++||+.+++  
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K--  480 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK--  480 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe--
Confidence            999999999999999889999999999987654333 5678899999999996 888877665    58999998643  


Q ss_pred             CccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          204 DDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                         +.........=.+-+|. +++++|.--+
T Consensus       481 ---iy~vTT~ta~DfsPaFD-~d~ryLYfLs  507 (668)
T COG4946         481 ---IYDVTTPTAYDFSPAFD-PDGRYLYFLS  507 (668)
T ss_pred             ---EEEecCCcccccCcccC-CCCcEEEEEe
Confidence               22222222222344566 5666554443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.8e-11  Score=104.82  Aligned_cols=249  Identities=13%  Similarity=0.127  Sum_probs=163.0

Q ss_pred             eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC
Q 016457           73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG  145 (389)
Q Consensus        73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  145 (389)
                      +..+.||+..|..++--.+.  +.+++++.|++|++|.++.       ..+..+++.|+.+|.++.|..+...++  +.|
T Consensus       728 L~nf~GH~~~iRai~AidNE--NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE--NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCD  803 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc--cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--ecc
Confidence            45678999999988776555  6899999999999999873       346778889999999999985544443  457


Q ss_pred             CeEEEEECcCCceeeeeee-cccCCeeEEEEecC-CCCeEEEE-eCCCcEEEEecCCCCCCCc-cceeeeccCCceeeEE
Q 016457          146 SQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPN-NQNKVVSA-SVDGLICTFDTGGDINDDD-LLESVINVGTSVGKVG  221 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~  221 (389)
                      |.|++||.--++++.++.. ...+.+..+..-|+ .+.++++| +...+|+++|.+...-..+ .+......+..+.+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            9999999887877664431 22233444443343 22244444 7789999999996531110 1111123345678888


Q ss_pred             EecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE-EEe
Q 016457          222 FFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY-FPV  300 (389)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i-~~~  300 (389)
                      .. +.|+.++++-.+|.|.+.|.++|+.+..+....            -....++- |..+  +++....|..+.+ |..
T Consensus       884 Va-~~GN~lAa~LSnGci~~LDaR~G~vINswrpme------------cdllqlaa-psdq--~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  884 VA-DKGNKLAAALSNGCIAILDARNGKVINSWRPME------------CDLLQLAA-PSDQ--ALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             ec-cCcchhhHHhcCCcEEEEecCCCceeccCCccc------------chhhhhcC-chhH--HHHhhcccceeEeeehh
Confidence            88 788899999999999999999999888776532            22333332 3344  6777777888888 866


Q ss_pred             ccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          301 NYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      ..+..      ..+.. ....+..           -...-|.-|+++.....+.+|.-.
T Consensus       948 ldgim------h~q~k-pppepah-----------flqsvgpSLV~a~~Gn~lgVYad~  988 (1034)
T KOG4190|consen  948 LDGIM------HLQDK-PPPEPAH-----------FLQSVGPSLVTAQNGNILGVYADS  988 (1034)
T ss_pred             cCCee------eeccC-CCCcchh-----------hhhccCceeEEeccCcEEEEEecc
Confidence            55432      11111 0001111           112334456888877788888643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.27  E-value=3.7e-08  Score=87.50  Aligned_cols=261  Identities=11%  Similarity=0.065  Sum_probs=157.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe--
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI--  127 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  127 (389)
                      +..++.++.++.+.-+|.++|+.+................ ++   .++.+..++.|..+|..+|+.+..+......+  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~---~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG---LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CC---EEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            4567778889999999999999888776433222122222 33   67778889999999999999998887531111  


Q ss_pred             ---EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC------CeeEEEEec--CCCCeEEEEeCCCcEEEEe
Q 016457          128 ---FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE------DVTQVHFVP--NNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       128 ---~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~~l~~~~~d~~i~i~d  196 (389)
                         .+-..  .++.+++++.+|.+..+|..+++.+.+.......      ....+..+|  .+. .++.++.+|.+..+|
T Consensus       196 ~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald  272 (394)
T PRK11138        196 RGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALD  272 (394)
T ss_pred             cCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEE
Confidence               11111  2456777888999999999999877654311100      000111111  132 677777899999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      ..++....+    . ... ....+...   +..++.++.++.+..+|..+++.+-......          + ....+..
T Consensus       273 ~~tG~~~W~----~-~~~-~~~~~~~~---~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----------~-~~~~sp~  332 (394)
T PRK11138        273 LRSGQIVWK----R-EYG-SVNDFAVD---GGRIYLVDQNDRVYALDTRGGVELWSQSDLL----------H-RLLTAPV  332 (394)
T ss_pred             CCCCCEEEe----e-cCC-CccCcEEE---CCEEEEEcCCCeEEEEECCCCcEEEcccccC----------C-CcccCCE
Confidence            987642111    1 111 11122332   3467888899999999999987654432210          0 1111111


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      ..  +.  +|+.++.+|.|+++|..+++.      +..... ....+.+-    +    .+ . +..|+.++.||.|..+
T Consensus       333 v~--~g--~l~v~~~~G~l~~ld~~tG~~------~~~~~~-~~~~~~s~----P----~~-~-~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        333 LY--NG--YLVVGDSEGYLHWINREDGRF------VAQQKV-DSSGFLSE----P----VV-A-DDKLLIQARDGTVYAI  391 (394)
T ss_pred             EE--CC--EEEEEeCCCEEEEEECCCCCE------EEEEEc-CCCcceeC----C----EE-E-CCEEEEEeCCceEEEE
Confidence            21  34  567888999999999998876      444331 11111111    0    11 2 3356788889999887


Q ss_pred             ec
Q 016457          357 LS  358 (389)
Q Consensus       357 ~~  358 (389)
                      ++
T Consensus       392 ~~  393 (394)
T PRK11138        392 TR  393 (394)
T ss_pred             eC
Confidence            64

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.26  E-value=1.8e-10  Score=94.96  Aligned_cols=157  Identities=11%  Similarity=0.069  Sum_probs=114.9

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCce----eeeeecCCCCcEEEEEEeCCCCCCEEEE---EecCCeEEEEEcc
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----YSGECKGHSSTVNQISFSGPSTPHVLHS---CSSDGTIRAWDTR  112 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s---~~~dg~i~iwd~~  112 (389)
                      .+..+..++.+++||++..+....++++....    +...+.. ...-+++.|..+.  .....   ++....+.+|...
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIRED--TSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeecc--ceEEEEeecCCceeeeeeccc
Confidence            34455678899999999988887777765432    2222221 2223444444443  23333   3445566677666


Q ss_pred             CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      .+. ...+-+|-+.++.++++|++..++++..|..|++-....-..+..+..+|+..|..++..++.  .|++++.|++|
T Consensus       141 ~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tl  217 (390)
T KOG3914|consen  141 SGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTL  217 (390)
T ss_pred             ccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcE
Confidence            533 334567889999999999999999999999999998887777777776899999999999875  69999999999


Q ss_pred             EEEecCCCCC
Q 016457          193 CTFDTGGDIN  202 (389)
Q Consensus       193 ~i~d~~~~~~  202 (389)
                      ++||++++..
T Consensus       218 r~Wd~~sgk~  227 (390)
T KOG3914|consen  218 RLWDITSGKL  227 (390)
T ss_pred             EEEecccCCc
Confidence            9999998753

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=5e-11  Score=96.20  Aligned_cols=152  Identities=13%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCce
Q 016457          138 YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV  217 (389)
Q Consensus       138 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i  217 (389)
                      +-++.|.+-.|-+-|++++... .+.  ..+.|.++.|...++ ++..|+.+|.|..+|+|....-........-|++.|
T Consensus       226 yhfs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv  301 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV  301 (425)
T ss_pred             eeecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence            3477777889999999887433 332  567899999999884 999999999999999996643334455556699999


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCce---eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQN---VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      +++....-++++|++.+.+|+|++||++.-++   +.++.+|..          ...-.-+-..+...  ++++++.|..
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN----------~~a~l~~~v~~eeg--~I~s~GdDcy  369 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN----------LSAYLPAHVKEEEG--SIFSVGDDCY  369 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc----------cccccccccccccc--eEEEccCeeE
Confidence            99988744788999999999999999998777   888887431          12222233344444  7888999999


Q ss_pred             EEEEEeccCCc
Q 016457          295 VGYFPVNYGGA  305 (389)
Q Consensus       295 i~i~~~~~~~~  305 (389)
                      .+||.+..+++
T Consensus       370 tRiWsl~~ghL  380 (425)
T KOG2695|consen  370 TRIWSLDSGHL  380 (425)
T ss_pred             EEEEecccCce
Confidence            99999998876

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.22  E-value=3.4e-10  Score=93.26  Aligned_cols=170  Identities=13%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---cEEEEEcCC
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---TLSIWDWKD  246 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~  246 (389)
                      ...+..+|.++ +++++..+....+++++...+ ...............++.+. .+......+..-|   .+.+|....
T Consensus        65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~-~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFI-REDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCce-EEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeee-eccceEEEEeecCCceeeeeecccc
Confidence            34456677775 888888888888888885432 11222222233344455555 3333444444434   444444433


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      +.+.-.+             +|...+++++++||++  +|+++..|..|+|-.....-.      +..+.-||+..|..+
T Consensus       142 ~~~~~~l-------------GhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~------IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  142 GRCEPIL-------------GHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFV------IESFCLGHKEFVSTI  200 (390)
T ss_pred             cCcchhh-------------hhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccc------hhhhccccHhheeee
Confidence            3333222             2889999999999998  999999999999987765433      455556999999999


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccchhhhhhHH
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWISNAM  373 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~~~~~~~~  373 (389)
                               +.-++.. |+|||.|++|++|++..+...++-.++.+.
T Consensus       201 ---------sl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~  237 (390)
T KOG3914|consen  201 ---------SLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCDLSSLV  237 (390)
T ss_pred             ---------eeccCce-eeecCCCCcEEEEecccCCcccccchhHhh
Confidence                     4433333 799999999999999999776666654443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=5.7e-10  Score=98.67  Aligned_cols=238  Identities=11%  Similarity=0.093  Sum_probs=157.6

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---------------eEEEEEEcCCCCeEEEEEeCCCCeEEEeec
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                      .....|++|+...  .+++.|+.||.+++-.+.+.               ..-+++.+|+..|.-+.|+.+...|-++..
T Consensus        14 nvkL~c~~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            4568899999877  79999999999999987643               123567899999999999977777777777


Q ss_pred             CCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457          145 GSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF  223 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (389)
                      +|.|.+|-+-.+.-...+. ...++.|.+|+|+.+|. .+.....||.|.+=.+..+.--.+.+     .......+.|+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeL-----kg~~l~hv~ws  165 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKEL-----KGQLLAHVLWS  165 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhc-----chheccceeec
Confidence            9999999988776543322 23567799999999995 99999999999887776432111111     12234478898


Q ss_pred             cCCCcEEEEEecCCcEEEEEcCCC-------ceeEEeeccc-----ccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          224 GETNKHLWCLTHIETLSIWDWKDG-------QNVASFENAR-----SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       224 ~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                       ++...++.+-.+|.+.+||....       .+.....+.-     .++...|..+...+     .-|+..  .++.+-.
T Consensus       166 -~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~-----v~pdrP--~lavcy~  237 (1189)
T KOG2041|consen  166 -EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP-----VPPDRP--RLAVCYA  237 (1189)
T ss_pred             -ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc-----CCCCCC--EEEEEEc
Confidence             66677777778899999997532       1111111111     12222232221111     124555  6788888


Q ss_pred             CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          292 AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       292 dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      +|.+.|-.-.+...       ..+. .-.-.|...         .|+++|.+|+.+|.|
T Consensus       238 nGr~QiMR~eND~~-------Pvv~-dtgm~~vga---------kWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  238 NGRMQIMRSENDPE-------PVVV-DTGMKIVGA---------KWNHNGAVLAVCGND  279 (1189)
T ss_pred             CceehhhhhcCCCC-------CeEE-ecccEeecc---------eecCCCcEEEEccCc
Confidence            89888876555433       1111 112445555         788888888888754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=9e-08  Score=84.82  Aligned_cols=216  Identities=11%  Similarity=0.045  Sum_probs=128.7

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                      ..|.+-|.+... .+.+.... ......|+|++. ..++..+.   +..|.++|+.+++...... ..+......|+|++
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~-~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQ-TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCC-cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence            356666665333 33333233 778899999993 23554333   3468899998887655443 34566778899999


Q ss_pred             CeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCCCCCCccceee
Q 016457          137 DYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       137 ~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~  210 (389)
                      ..++....   +..|.++|+.+++. ..+. .+........|+|+|+ .|+..+ ..+  .|+++|+.++.     ...+
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~-----~~rl  316 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGS-----VEQV  316 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCC-----eEeC
Confidence            88876544   46788889877754 3444 2333344568999997 554444 333  57788887553     1111


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecC---------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHI---------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ......  ...|+ ++++.++..+..         ..|.+.|+.++.. ..+...             .......|+|||
T Consensus       317 t~~g~~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-------------~~~~~p~~SPDG  379 (419)
T PRK04043        317 VFHGKN--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-------------GVNQFPRFSSDG  379 (419)
T ss_pred             ccCCCc--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-------------CCcCCeEECCCC
Confidence            111111  24788 667766655543         2678888877753 333321             122357899999


Q ss_pred             CeEEEEEecC-CceEEEEEeccCC
Q 016457          282 ENLWVIGGTG-AGTVGYFPVNYGG  304 (389)
Q Consensus       282 ~~~~l~~g~~-dg~i~i~~~~~~~  304 (389)
                      +.+++++... ...|.+.++....
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCCe
Confidence            9554443322 2346677776543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=1.1e-08  Score=80.14  Aligned_cols=243  Identities=8%  Similarity=-0.036  Sum_probs=150.6

Q ss_pred             CEEEEEecCCeEEEEEccCCeEE-EEEEcCCCCeEEEE-EeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeE
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEV-WSVTAGSQEIFCFS-FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ  172 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  172 (389)
                      .+|+.|+..|...+|...+.+-. .....+...|+-+. .......++.++.|.++++.++.-+.....+- -..-.+.+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h-~~~~~~ns  163 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH-NQNLTQNS  163 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceee-ccccceee
Confidence            48999999999999999865443 33333333332211 11123457777888888888877554333322 11234889


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce-eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE-SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      ++++++++ ++++.+....|..|.+....  ..... ........-.+..|+ .....++++..||++.|||++......
T Consensus       164 ~~~snd~~-~~~~Vgds~~Vf~y~id~~s--ey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  164 LHYSNDPS-WGSSVGDSRRVFRYAIDDES--EYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eEEcCCCc-eEEEecCCCcceEEEeCCcc--ceeeeeEecccCCCceeeeec-cCcceEEEEecCCcEEEEEecccccch
Confidence            99999996 99999999999999998432  11122 233344455677888 667789999999999999998754433


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc--CC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL--PM  329 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~  329 (389)
                      .....       ....|.+.+..+.|++-|.-=+|+..-.-+.+.+.|++++..      .+.+. ...    ++.  +.
T Consensus       240 ~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~------~q~I~-i~~----d~~~~~~  301 (344)
T KOG4532|consen  240 AEISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN------HQVIV-IPD----DVERKHN  301 (344)
T ss_pred             hhhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce------eeEEe-cCc----ccccccc
Confidence            22211       111278999999999866422445554567899999998764      11111 000    010  11


Q ss_pred             -CcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          330 -PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       330 -~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       ..++...|+.++.-+.+.+++ .+.=|++...
T Consensus       302 tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  302 TQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             ccccccccccCCCcccccccch-hhheeecccc
Confidence             112333677776666666544 4555666543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.18  E-value=4.4e-08  Score=80.78  Aligned_cols=218  Identities=10%  Similarity=0.045  Sum_probs=137.3

Q ss_pred             CCeEEEEeCCCceeeeeecCC--CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           59 TNVVKLYSPVTGQYSGECKGH--SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                      +|.|..||..+|+.+....--  .....+.....+   ..+++++.++.|..||..+|+.+..+... ..+...... .+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~-~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVV-DG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEE-ET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeee-cc
Confidence            689999999999998887531  122222233233   47888889999999999999999988863 222221222 56


Q ss_pred             CeEEEeecCCeEEEEECcCCceeeeeeeccc---CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc
Q 016457          137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHV---EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV  213 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  213 (389)
                      +.+++++.++.|..+|.++++.+.+......   ...........+ ..++++..++.|..+|++++.    .+-.....
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~  151 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKYPVG  151 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEEESS
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEeecC
Confidence            7888888888999999999999888421221   111222222235 388888889999999999764    22222221


Q ss_pred             CCc----------eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          214 GTS----------VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       214 ~~~----------i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                      ...          +..-... .++ .++.++.++.+..+|+.+++.+-... .             ..+.. .....+. 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-------------~~~~~-~~~~~~~-  213 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-------------SGIYS-LPSVDGG-  213 (238)
T ss_dssp             TT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC-S-------------S-ECE-CEECCCT-
T ss_pred             CCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec-C-------------CCccC-CceeeCC-
Confidence            111          1122222 334 77777777754444999998663222 1             22222 1345566 


Q ss_pred             EEEEEecCCceEEEEEeccCCc
Q 016457          284 LWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       .|+.++.++.|..||+.+++.
T Consensus       214 -~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  214 -TLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -EEEEEETTTEEEEEETTTTEE
T ss_pred             -EEEEEeCCCEEEEEECCCCCE
Confidence             556666899999999999875

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.1e-09  Score=91.62  Aligned_cols=300  Identities=13%  Similarity=0.189  Sum_probs=200.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--c-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--G-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~  113 (389)
                      .+.|+.+... -.+++.+++.||.++.|--..  | +.+..+..|...|.+++.+-++  .++.|++. |..++++|+.+
T Consensus         9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc--eeEeeccCcccceeEEEeec
Confidence            4555555444 346999999999999997543  2 5566778899999999999898  68888777 99999999987


Q ss_pred             CeEEEEEEcC--CCCeEEEEEeCCC-CeEEEeec--CCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          114 FHEVWSVTAG--SQEIFCFSFGGST-DYLLAAGC--GSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       114 ~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~--d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      -..+.-++..  .+.+..+ .+|.+ -.+++.+.  ++.+.++|-.... +..-+..-|..+|.++.++|.+. .+++..
T Consensus        86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD  163 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSID  163 (558)
T ss_pred             cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeecc
Confidence            6655433332  2222222 22111 12333333  7999999987543 44444457999999999999996 899998


Q ss_pred             CCCcEEEEecCCCC-----------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457          188 VDGLICTFDTGGDI-----------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       188 ~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  256 (389)
                      ..|.|..|......           +....+..+........++.|+ +++..+.+-+.|..|++++.++++.++.+...
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            89999999987311           0112222333445677899999 78888999999999999999999887666532


Q ss_pred             cccc----cCCccC-----------------CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEE
Q 016457          257 RSLA----SDSWTL-----------------DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL  315 (389)
Q Consensus       257 ~~~~----~~~~~~-----------------~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~  315 (389)
                      ....    ......                 .....-+.+.|...++  ||+-|+.=| |+++++.++..       ..+
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~--flly~t~~g-ikvin~~tn~v-------~ri  312 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN--FLLYGTILG-IKVINLDTNTV-------VRI  312 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC--EEEeeccee-EEEEEeecCeE-------EEE
Confidence            2111    001000                 0123345677888888  888887766 99999998875       222


Q ss_pred             ecccceeee------------------ec-cCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          316 VGGHTAVVR------------------SV-LPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       316 ~~~h~~~v~------------------~~-~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      . |....|+                  .+ +...+.+  .+.+|-..++++-.-..++++
T Consensus       313 ~-gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~--~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  313 L-GKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLL--EFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             e-ccchhhhhhhHHHHhhhhhccchhhhhhhccCccc--ccCCCCeEEEeeeecceEEEE
Confidence            2 2221111                  22 2333334  577787888888888888888

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.17  E-value=1.6e-09  Score=98.36  Aligned_cols=186  Identities=16%  Similarity=0.173  Sum_probs=147.2

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      +..++.|+-...+..+|+.+.+..+........|.-++.+  +  .++.+|...|+|.+-|.++.+.++++..|.+.|..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N--RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C--cEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            3456666666778888998888777766555567666653  4  58999999999999999999999999999999998


Q ss_pred             EEEeCCCCeEEEeec---------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          130 FSFGGSTDYLLAAGC---------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                      +..  .|+.|+++|.         |.-|++||+|..+.+.-+. -+.+ ..-+.|+|.-...+++++..|...+.|..+-
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccC-chhhhhcccccceEEEEecccceeecccccc
Confidence            887  6889999885         5679999999887776665 3333 3668899987778999999999999995543


Q ss_pred             CCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      .+....+.......+.+..+.++ ++++.++.+..+|.|.+|--
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiS-sn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDIS-SNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEec-CCCceEEEecccCcEeeecC
Confidence            33333444455556679999999 88999999999999999973

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=2.2e-07  Score=73.97  Aligned_cols=230  Identities=11%  Similarity=0.127  Sum_probs=136.5

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecC---CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKG---HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .++.+++|++||+-. |..|.|-..++.  ..+.+.+.   ..-.=..++|+|++  .+||.+...|+|+++|+.. ..+
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~--tlLa~a~S~G~i~vfdl~g-~~l   77 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC--TLLAYAESTGTIRVFDLMG-SEL   77 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC--cEEEEEcCCCeEEEEeccc-cee
Confidence            356788998888776 788888776542  22233222   22345789999999  7999999999999999874 444


Q ss_pred             EEEEcC-------CCCeEEEEEeCCC------CeEEEeecCCeEEEEECcCC-----ceeee--eeecccCCeeEEEEec
Q 016457          118 WSVTAG-------SQEIFCFSFGGST------DYLLAAGCGSQIQFWDWRNK-----KQVAC--LEESHVEDVTQVHFVP  177 (389)
Q Consensus       118 ~~~~~~-------~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-----~~~~~--~~~~~~~~v~~~~~~~  177 (389)
                      ..+...       ...|..+.|.+..      ..|++...+|.++-|-+..+     +...+  +...+...|.++.++|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            444322       3567777776432      35777778888887775322     22223  2223466899999999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCC------cEEEEEcCCCcee
Q 016457          178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIE------TLSIWDWKDGQNV  250 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~------~i~i~d~~~~~~~  250 (389)
                      ..+ +|++|+....      ..+      .  .......+++-........+. +....|+      +..+|.+-+.+..
T Consensus       158 ~h~-LLlVgG~~~~------~~~------~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f  222 (282)
T PF15492_consen  158 KHR-LLLVGGCEQN------QDG------M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF  222 (282)
T ss_pred             CCC-EEEEeccCCC------CCc------c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee
Confidence            985 7776664322      000      0  001111222222210111111 1111111      1223333322221


Q ss_pred             EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .....            ..+.|..+..||||+  .|++...+|.|.+|++.+-++
T Consensus       223 s~~~~------------~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  223 SRQGQ------------EQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ecccc------------CCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcchh
Confidence            11111            347899999999999  889999999999999988665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=3.4e-07  Score=88.52  Aligned_cols=254  Identities=15%  Similarity=0.177  Sum_probs=156.1

Q ss_pred             ceEEEeecCCCCeEEEEec---C---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEE
Q 016457           40 YVFEIVPKNDWSLMAVSLS---T---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWD  110 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~---d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd  110 (389)
                      .-..++|-.||.++|+.+-   .   ..++||+-+ |++...-..-.+--.+++|.|.|  ++||+...   ...|.+|.
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe
Confidence            4457889999999998875   2   589999955 66554443333344678999999  68888764   34577776


Q ss_pred             ccCCeEEEEEEc----CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEE
Q 016457          111 TRSFHEVWSVTA----GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       111 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                       ++|-.-..|..    ....|..+.|++++..|++... ..|.+|-..+..-  .+.+.......+..+.|+|..+..|.
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-DRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-CCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence             34444333333    3578999999987777777554 4499999877642  33333123344566999999887888


Q ss_pred             EEeCCCcEEEEecC----CCCC--------------------------CCccc-eeeeccCCceeeEEEecCCCcEEEEE
Q 016457          185 SASVDGLICTFDTG----GDIN--------------------------DDDLL-ESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       185 ~~~~d~~i~i~d~~----~~~~--------------------------~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      ..+.+|.+..+++.    .+..                          .+.++ ......+.+|..++|+ +++..+++.
T Consensus       366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~-~~~~~~avl  444 (928)
T PF04762_consen  366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS-PSNSRFAVL  444 (928)
T ss_pred             EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe-CCCCeEEEE
Confidence            88887877666553    1100                          00000 1112235789999999 555569999


Q ss_pred             ecCCcEEEEEcCCCcee--------EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC---CceEEEEEecc
Q 016457          234 THIETLSIWDWKDGQNV--------ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG---AGTVGYFPVNY  302 (389)
Q Consensus       234 ~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~---dg~i~i~~~~~  302 (389)
                      ..||.|.+|........        ..+.........  .......+..++|..+..  +++....   ...+.++++..
T Consensus       445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD--SELPLGSLRQLAWLNDDT--LLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             ECCCCEEEEEecCCCcccccCcchhhhcccccccccc--cccccccEEEEEEeCCCE--EEEEEecCcccceEEEEEecc
Confidence            99999999985443211        111110000000  000235567788877665  3333333   46788888744


Q ss_pred             C
Q 016457          303 G  303 (389)
Q Consensus       303 ~  303 (389)
                      .
T Consensus       521 ~  521 (928)
T PF04762_consen  521 S  521 (928)
T ss_pred             C
Confidence            3

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=9.7e-09  Score=91.87  Aligned_cols=324  Identities=12%  Similarity=0.002  Sum_probs=196.6

Q ss_pred             CCCCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecC---CC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCc
Q 016457           10 SQPKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKN---DW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSST   82 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~   82 (389)
                      ..+..|++.-.|.|.+||...  .+..+.+ .++|..++|-+   +. ..|++-....+|.+|+..+|+....+......
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i  157 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI  157 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence            456678888889999999753  3444555 78888999865   23 45666566789999999999998888766677


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEcc--------------------------------------------------
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTR--------------------------------------------------  112 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~--------------------------------------------------  112 (389)
                      ..|+.+.|-.. ..+..-+..|.+-+-+.-                                                  
T Consensus       158 Ls~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  158 LSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             eeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence            77788877654 333333334444433321                                                  


Q ss_pred             ------------------------CCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCC----------
Q 016457          113 ------------------------SFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNK----------  156 (389)
Q Consensus       113 ------------------------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~----------  156 (389)
                                              -..++..+....+.+.-+.+-|+  ...+++.-.||.+.+|-.+..          
T Consensus       237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~  316 (1062)
T KOG1912|consen  237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNAS  316 (1062)
T ss_pred             hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchh
Confidence                                    11122222222222333444443  445777777898888875541          


Q ss_pred             ------ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc------------------------c
Q 016457          157 ------KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD------------------------L  206 (389)
Q Consensus       157 ------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------------------------~  206 (389)
                            +++..+....+..+......|..++.++.--.+|.+.+|.++++.....                        .
T Consensus       317 l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~  396 (1062)
T KOG1912|consen  317 LSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTS  396 (1062)
T ss_pred             hccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhcc
Confidence                  1111111111222333444455444555556678888898885431100                        0


Q ss_pred             c---eeeeccCCceeeEEE----------ecCCC-------cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          207 L---ESVINVGTSVGKVGF----------FGETN-------KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       207 ~---~~~~~~~~~i~~~~~----------~~~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      +   .....|.........          .++.+       .+++.|+..|+|.++|+.++...+.+..           
T Consensus       397 l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv-----------  465 (1062)
T KOG1912|consen  397 LISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV-----------  465 (1062)
T ss_pred             ccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc-----------
Confidence            0   000112222222211          11222       2678999999999999999988777776           


Q ss_pred             CCCCceeeecccCCCCeEEEE---------EecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCC
Q 016457          267 DDVDYFVDCHYPGEGENLWVI---------GGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPA  337 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~---------~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  337 (389)
                       |...|.++.|-....  ++-         +|+.-+.+.+-|+.+|....    ...+....+.+|+.+         ..
T Consensus       466 -ht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~----fR~l~~~despI~~i---------rv  529 (1062)
T KOG1912|consen  466 -HTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR----FRGLQKPDESPIRAI---------RV  529 (1062)
T ss_pred             -cccceeeeeecccee--EEEeeeccccccccceeeeEEEEEcccccccc----cccCCCCCcCcceee---------ee
Confidence             667788888876544  221         22223467788898886521    233333445788888         89


Q ss_pred             CCCceeEEEecCCCeEEEEeccCC
Q 016457          338 QSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       338 s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |.-|+||+..-.|.-+.+|++...
T Consensus       530 S~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  530 SSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             cccCceEEEEecccchHHHhhccc
Confidence            999999999999999999999543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.14  E-value=1e-09  Score=85.39  Aligned_cols=148  Identities=15%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             CCCeEEEEecCCeEEEEeCCCce-eeeeecC-CCCcEEEEEEeCCCCCCEEEEEe-----cCCeEEEEEccCCeEEEEEE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQ-YSGECKG-HSSTVNQISFSGPSTPHVLHSCS-----SDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~  121 (389)
                      .++.++++..||.+.+++.+.-. ....+.. |.+ -.+.++...+  +.+.++.     .-+..++|+++..+.+..-.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecc--cEEecCCcceEeeccceeeecccccccccccc
Confidence            35679999999999999976411 1111111 111 1222333333  3444432     12335566665333222212


Q ss_pred             cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          122 AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       122 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      .....|++++-+|..+.++++|. ||.+-+||.++......+...|+.++..+-|+|..+..|+++++||.+-.||..+
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            22345999999998877776665 8999999999886555444489999999999999888999999999999999984

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.12  E-value=2e-07  Score=76.93  Aligned_cols=216  Identities=13%  Similarity=0.048  Sum_probs=133.2

Q ss_pred             CCeEEEEecCc--eeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKN--SIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      +++|..||..+  .+-...-   .....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.......++  
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~--   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG--   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT--
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc--
Confidence            57888888742  2222221   1222211 333556788888899999999999999887764 2222221222233  


Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEE-EcCC---CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC-
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSV-TAGS---QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED-  169 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-  169 (389)
                       .++.+..++.|..+|..+|+.+... ....   ...........++.++++..++.|..+|+++|+.+.... ..... 
T Consensus        78 -~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~  155 (238)
T PF13360_consen   78 -RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRG  155 (238)
T ss_dssp             -EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-S
T ss_pred             -ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCC
Confidence             6777778889999999999999984 4321   112222222247888888889999999999999988776 32211 


Q ss_pred             ---------eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          170 ---------VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       170 ---------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                               +..-....++  .++.++.++.+..+|+.++.    .+-  ......+..+ .. ..+..|++++.++.|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~----~~w--~~~~~~~~~~-~~-~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGE----KLW--SKPISGIYSL-PS-VDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             S--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTE----EEE--EECSS-ECEC-EE-CCCTEEEEEETTTEEE
T ss_pred             CcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCC----EEE--EecCCCccCC-ce-eeCCEEEEEeCCCEEE
Confidence                     1122222233  66667777754444998663    121  1112223332 22 4556777777999999


Q ss_pred             EEEcCCCceeE
Q 016457          241 IWDWKDGQNVA  251 (389)
Q Consensus       241 i~d~~~~~~~~  251 (389)
                      .||+++++.+-
T Consensus       226 ~~d~~tG~~~W  236 (238)
T PF13360_consen  226 ALDLKTGKVVW  236 (238)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCCCEEe
Confidence            99999998764

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=3.6e-10  Score=91.34  Aligned_cols=144  Identities=11%  Similarity=0.126  Sum_probs=112.9

Q ss_pred             cCCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-----eeeeeecCCCCcEEEEEEeC
Q 016457           17 CDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-----QYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        17 ~~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .+.+..|-+-++.+-...... .+.|+++.|...++++..|+.+|.|..+|+..+     .+.+.+. |...|+++....
T Consensus       230 ~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq  308 (425)
T KOG2695|consen  230 VGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQ  308 (425)
T ss_pred             ccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhc
Confidence            334455666666554544445 888999999998999999999999999999754     3444444 899999998876


Q ss_pred             -CCCCCEEEEEecCCeEEEEEccCCeE---EEEEEcCCC--CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           91 -PSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVTAGSQ--EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        91 -~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                       ++  ++|++.+.+|+|++||.+--++   +.++.+|..  .-.-+-.++..+.++++|.|...+||.++.+..+.++.
T Consensus       309 ~s~--q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  309 FSQ--QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ccc--ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence             44  7899999999999999986665   888888833  23334456678889999999999999999999988876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.09  E-value=2.3e-07  Score=82.43  Aligned_cols=265  Identities=12%  Similarity=0.020  Sum_probs=158.0

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCC----------cE-EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS----------TV-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .+..+++++.++.+.-+|.++|+.+....-...          .+ ..+..  .+  ..++.++.+|.+..+|..+|+.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~--~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AG--GKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--EC--CEEEEEcCCCEEEEEECCCCCCc
Confidence            355788888889999999999998877643210          00 01122  22  36778888999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----eEEEEecCCCCeEEEEeCCCcE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----TQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      .+.+.......+...  .++.++++..++.|..+|.++++.+.++. .....+     .+-... ++  .++.++.+|.+
T Consensus       144 W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~-~~--~v~~~~~~g~v  217 (394)
T PRK11138        144 WQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAPATA-FG--GAIVGGDNGRV  217 (394)
T ss_pred             ccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCCEEE-CC--EEEEEcCCCEE
Confidence            887764322222222  35678888889999999999999988776 211100     111111 22  56777789999


Q ss_pred             EEEecCCCCCCCccceeeeccCCc------e-eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          193 CTFDTGGDINDDDLLESVINVGTS------V-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~------i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      ..+|..++................      + ..-...   +..+++++.++.+..+|..+++.+-....          
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~---~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------  284 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV---GGVVYALAYNGNLVALDLRSGQIVWKREY----------  284 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEE---CCEEEEEEcCCeEEEEECCCCCEEEeecC----------
Confidence            999988764221110000000000      0 111121   33677778899999999999987654432          


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec-ccceeeeeccCCCcccCCCCCCCceeE
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG-GHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                          .....+.  ..++  .|+.++.+|.++.+|..+++.      +..... .+. ...+.         ..  .+.+|
T Consensus       285 ----~~~~~~~--~~~~--~vy~~~~~g~l~ald~~tG~~------~W~~~~~~~~-~~~sp---------~v--~~g~l  338 (394)
T PRK11138        285 ----GSVNDFA--VDGG--RIYLVDQNDRVYALDTRGGVE------LWSQSDLLHR-LLTAP---------VL--YNGYL  338 (394)
T ss_pred             ----CCccCcE--EECC--EEEEEcCCCeEEEEECCCCcE------EEcccccCCC-cccCC---------EE--ECCEE
Confidence                1111111  2345  456677899999999988765      211110 010 00110         11  13445


Q ss_pred             EEecCCCeEEEEeccCCc
Q 016457          345 WTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~~~  362 (389)
                      +.++.||.|.+.+..++.
T Consensus       339 ~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        339 VVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EEEeCCCEEEEEECCCCC
Confidence            778889999988887663

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=5.5e-11  Score=107.35  Aligned_cols=216  Identities=16%  Similarity=0.184  Sum_probs=152.6

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-eEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-TIRA  108 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-~i~i  108 (389)
                      .++++.. ....+|++|+-+.+.|++|+..|.|++|++.+|.......+|..+|+-+.=+.+++ ..|.+++... -..+
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs-~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS-TQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc-eeeeeccccCchHHH
Confidence            4555665 78899999999999999999999999999999999999999999999999888885 3444444444 5679


Q ss_pred             EEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee---cccCCeeEEEEecCCCCeEE
Q 016457          109 WDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE---SHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       109 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~  184 (389)
                      |++.+ +...++|..    -.++.|+.....-+.++......+||+.++.++.++..   +....-++..|+|... +++
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL 1246 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe
Confidence            99864 445555543    45678874444444555557889999999988777431   1222347789999985 554


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                         .||  .+||.+..    ..+..+...... ..-.|+ |++.-++..+.     |||+++.+.++.....        
T Consensus      1247 ---ndG--vLWDvR~~----~aIh~FD~ft~~-~~G~FH-P~g~eVIINSE-----IwD~RTF~lLh~VP~L-------- 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIP----EAIHRFDQFTDY-GGGGFH-PSGNEVIINSE-----IWDMRTFKLLHSVPSL-------- 1302 (1516)
T ss_pred             ---eCc--eeeeeccH----HHHhhhhhheec-cccccc-CCCceEEeech-----hhhhHHHHHHhcCccc--------
Confidence               355  57999943    334443333211 223477 67777777665     9999999988877652        


Q ss_pred             cCCCCCceeeecccCCCC
Q 016457          265 TLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~  282 (389)
                            .-..+.|+..|+
T Consensus      1303 ------dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1303 ------DQCAVTFNSTGD 1314 (1516)
T ss_pred             ------cceEEEeccCcc
Confidence                  235667777776

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=7.3e-07  Score=79.11  Aligned_cols=211  Identities=10%  Similarity=-0.022  Sum_probs=127.1

Q ss_pred             CeEEEEecCc-eeeeeecCcceEEEeecCCCCe-EEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC
Q 016457           21 NSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSL-MAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        21 ~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      ..|.+=|... ..+.+...+.+....|+|||+. ++..+.+   ..|.++|+.+++...... ..+......|+|++. .
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~-~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS-K  246 (419)
T ss_pred             ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC-E
Confidence            3455544432 2222323336778999999984 6654433   579999998886554433 445566788999994 3


Q ss_pred             EEEEEecC--CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcCCceeeeeeecccCCe
Q 016457           96 VLHSCSSD--GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        96 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      ++++.+.+  ..|.++|+.+++.. .+..+........|+|+++.++..+. .  ..|.+.|+.+++..+...  .... 
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~-  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN-  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc-
Confidence            44455444  45777788777643 34433333445689999998888775 2  368888988776543332  1111 


Q ss_pred             eEEEEecCCCCeEEEEeCC---------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC---c
Q 016457          171 TQVHFVPNNQNKVVSASVD---------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE---T  238 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~  238 (389)
                       ...|+|+|+ .++..+..         ..|.+.|+.++.     ...+... .......|+ |+++.++..+.++   .
T Consensus       323 -~~~~SPDG~-~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~S-PDG~~I~f~~~~~~~~~  393 (419)
T PRK04043        323 -NSSVSTYKN-YIVYSSRETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFS-SDGGSIMFIKYLGNQSA  393 (419)
T ss_pred             -CceECCCCC-EEEEEEcCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEEC-CCCCEEEEEEccCCcEE
Confidence             248999997 55555433         368888887653     2222222 223357898 6777665555432   4


Q ss_pred             EEEEEcCC
Q 016457          239 LSIWDWKD  246 (389)
Q Consensus       239 i~i~d~~~  246 (389)
                      |.+.++..
T Consensus       394 L~~~~l~g  401 (419)
T PRK04043        394 LGIIRLNY  401 (419)
T ss_pred             EEEEecCC
Confidence            66666643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=1.2e-07  Score=75.40  Aligned_cols=199  Identities=14%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-------CCCcEEEEEEeCCCC----CCEEEEEecCCeEEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-------HSSTVNQISFSGPST----PHVLHSCSSDGTIRA  108 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~i  108 (389)
                      .=+.++|+||+.+||.+...|+|++||+.. ..+..+..       -...|..+.|.+...    ...|+.-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            346799999999999999999999999874 33333322       235677777765431    125666677888887


Q ss_pred             EEccC-----CeEEEEEEc---CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC
Q 016457          109 WDTRS-----FHEVWSVTA---GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       109 wd~~~-----~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      |-+..     .+..++|..   +...|.++.++|..+.|+++|....      +.+.  .  . +....+++-....+.+
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s--~-a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--S--K-ASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--c--c-ccccCceEEEEcCCCC
Confidence            77532     234444443   3679999999998888888886221      0000  0  0 1112222222222222


Q ss_pred             CeEE-EEeCCCc------EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          181 NKVV-SASVDGL------ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       181 ~~l~-~~~~d~~------i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      .+.. +...|+.      ..+|.+-+.    ............|..|..+ |++..|++...+|.|.+|++.+.++...+
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLS-PDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cEEEccccCccccccccccceeeccce----eeeeccccCCCceEEEEEC-CCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            1111 1111111      112222110    0111112346789999999 88999999999999999999988777766


Q ss_pred             ec
Q 016457          254 EN  255 (389)
Q Consensus       254 ~~  255 (389)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            54

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.1e-08  Score=82.98  Aligned_cols=267  Identities=14%  Similarity=0.078  Sum_probs=156.3

Q ss_pred             EEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE
Q 016457           62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA  141 (389)
Q Consensus        62 i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  141 (389)
                      ++..+..+.+....+.+|...|.+++|+|... -++..++.+..|+|.|+++...+..+..+ ..+++++|.-++...+-
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCcccc-ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence            56666655566666778889999999999884 38899999999999999999999999887 89999999877777666


Q ss_pred             eec-CCeEEEEECcCCce-eeeeee-cccCCeeEEEE------ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec
Q 016457          142 AGC-GSQIQFWDWRNKKQ-VACLEE-SHVEDVTQVHF------VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       142 ~~~-d~~i~iwd~~~~~~-~~~~~~-~~~~~v~~~~~------~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      +|. .|.|.+||++..+- +..+.. -...+|..++.      .+.+. +++....+  +..|.+........++. ...
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vl-ele  328 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVL-ELE  328 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCccc-ccC
Confidence            665 89999999997543 222220 11233444332      23333 44444333  55666653321122222 223


Q ss_pred             cCCceeeEEEecCCCcEEEEEecCC---cEE---E-EEcCCCceeEEee----cccccccCCccCCCCCceeeecc-cCC
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHIE---TLS---I-WDWKDGQNVASFE----NARSLASDSWTLDDVDYFVDCHY-PGE  280 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d~---~i~---i-~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~-~~~  280 (389)
                      ..+...++++.+.....|++.-.+.   +++   . -|-.+|..+..-.    +...-      .-+..   ...+ .++
T Consensus       329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~------kl~t~---~ai~~~~~  399 (463)
T KOG1645|consen  329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT------KLSTT---QAIRAVED  399 (463)
T ss_pred             CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc------ccccc---cceecccc
Confidence            3456667777644444455444321   011   1 1112222221111    11000      00111   1112 233


Q ss_pred             CCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          281 GENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      . ..++..|.....+.+||..+.+.      ++.+.  -..+|.+++|..       -..+.||+.-. |..++||+.+.
T Consensus       400 n-n~iv~~gd~tn~lil~D~~s~ev------vQ~l~--~~epv~Dicp~~-------~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  400 N-NYIVVVGDSTNELILQDPHSFEV------VQTLA--LSEPVLDICPND-------TNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             c-cEEEEecCCcceeEEeccchhhe------eeecc--cCcceeecceee-------cCCcchhhhee-cceEEEEecCC
Confidence            3 33556777778999999999876      56664  347888885321       11234566665 66899988653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.05  E-value=2.1e-07  Score=79.00  Aligned_cols=142  Identities=10%  Similarity=-0.001  Sum_probs=110.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCC-eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTN-VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|.-..+..++.-++.|..|| .+-|+|..+++. +.+...-+.|.++..+++|  ++++.+.....|-+.|+.++..
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG--K~~vvaNdr~el~vididngnv  435 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG--KKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCC--cEEEEEcCceEEEEEEecCCCe
Confidence            66688888888888999999999 999999987764 4455567889999999999  7899988888899999999987


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecC----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCG----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ...-+...+-|+.++|+|++..++-+--+    ..|+++|+..++....-.  ....=.+-+|.|+++ .|.-
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~r-yLYf  505 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGR-YLYF  505 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCc-EEEE
Confidence            66656667889999999888777765444    579999998876654333  233334567888886 4433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.02  E-value=1.2e-06  Score=72.03  Aligned_cols=232  Identities=11%  Similarity=0.128  Sum_probs=152.3

Q ss_pred             cceEEEeecC-CCCeEEEEecCC-eEEEEeCCCceeeeeecCCCCcE--EEEEEeCCCCCCEEEEEe-----cCCeEEEE
Q 016457           39 DYVFEIVPKN-DWSLMAVSLSTN-VVKLYSPVTGQYSGECKGHSSTV--NQISFSGPSTPHVLHSCS-----SDGTIRAW  109 (389)
Q Consensus        39 ~~v~~~~~~~-~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~-----~dg~i~iw  109 (389)
                      .....++.+| ....++.+-.-| ...+||..+++....+....+.-  ---+|++++  ++|++.-     ..|.|-||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG--~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG--RLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC--CEEEEeccccCCCcEEEEEE
Confidence            3456788899 455666665544 68889999998877664432221  135799999  6777754     35789999


Q ss_pred             Ecc-CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec------------------CCeEEEEECcCCceeeeee---eccc
Q 016457          110 DTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC------------------GSQIQFWDWRNKKQVACLE---ESHV  167 (389)
Q Consensus       110 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~---~~~~  167 (389)
                      |.. +.+.+..+..+.-.-..+.+.|++..|+++-.                  +..+.+.|.++++.+.+..   .-|.
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            999 67888888888767778889999978777632                  2356677888888877643   1377


Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCc-------EEEEecCCCCCC-CccceeeeccCCceeeEEEecCCCcEE-EEEecCCc
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGL-------ICTFDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIET  238 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~  238 (389)
                      ..|..|++.++|. .++..-..|.       |-+++....... .............+-+|+++ .++..+ +++=..+.
T Consensus       163 lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCE
Confidence            7899999999984 4444433322       334433311000 00011122345788999999 666555 45555679


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      +.+||..+++.+....-              ..+..++-.+++   |+++.+.
T Consensus       241 ~~~~d~~tg~~~~~~~l--------------~D~cGva~~~~~---f~~ssG~  276 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPL--------------PDACGVAPTDDG---FLVSSGQ  276 (305)
T ss_pred             EEEEECCCCCEeecccc--------------CceeeeeecCCc---eEEeCCC
Confidence            99999999988876654              335566655544   5665544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=2.4e-10  Score=103.36  Aligned_cols=201  Identities=13%  Similarity=0.119  Sum_probs=143.5

Q ss_pred             eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeE
Q 016457           71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQI  148 (389)
Q Consensus        71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i  148 (389)
                      +....+..|+...+|++|+...  +.|+.|+..|.|+++++.+|......++|.++|+.+.-+.++..+++.+.  ....
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~--~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT--NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccchhhhccccceeeEEeecCC--ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            3445667788999999999887  79999999999999999999999999999999999999988888888766  3367


Q ss_pred             EEEECcC-CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC
Q 016457          149 QFWDWRN-KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN  227 (389)
Q Consensus       149 ~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (389)
                      .+|++.+ +.+..++.     .-.++.|+..-. .-+.|+......+||+.++......+.........-+...|+ |..
T Consensus      1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs-P~D 1242 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS-PCD 1242 (1516)
T ss_pred             HHhccccccCcccccc-----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC-CCc
Confidence            8999874 44555554     235778877653 444555556789999997753333333333333334667788 444


Q ss_pred             cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+++   .||  .+||.+..+.++.|....             .-..-.|+|.|.++  +.-+     -|||+.+.++
T Consensus      1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft-------------~~~~G~FHP~g~eV--IINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT-------------DYGGGGFHPSGNEV--IINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             ceEe---eCc--eeeeeccHHHHhhhhhhe-------------ecccccccCCCceE--Eeec-----hhhhhHHHHH
Confidence            5544   344  379999888888776421             12234699999854  4443     4899988765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.98  E-value=2.4e-08  Score=90.97  Aligned_cols=180  Identities=10%  Similarity=0.111  Sum_probs=134.6

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      ..++.|+....+..+|+++.+..+......+.|+-+..  ++..+++|...|+|.+-|.++.+.+.++. +|.+.|..+.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD  224 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD  224 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence            56777887778888999998888877766556777776  56778888889999999999999999999 9999998777


Q ss_pred             EecCCCCeEEEEeC---------CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc-
Q 016457          175 FVPNNQNKVVSASV---------DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW-  244 (389)
Q Consensus       175 ~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~-  244 (389)
                      ..  | |.|++++.         |..|++||+|+-.    .+..+.-+. ...-+.|.|.-...+++++..|...+-|. 
T Consensus       225 v~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  225 VQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             cc--C-CeEEEeecccccccccccchhhhhhhhhhh----ccCCccccc-CchhhhhcccccceEEEEecccceeecccc
Confidence            65  4 58888875         5668999999432    122111121 22456677666678999999999999983 


Q ss_pred             --CCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          245 --KDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       245 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                        .+.. .+..+..            ....+..++++++++  .++.|..+|.|.+|.
T Consensus       297 ~lsNP~~~~~~v~p------------~~s~i~~fDiSsn~~--alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNP------------NGSGISAFDISSNGD--ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCccceeEEcc------------CCCcceeEEecCCCc--eEEEecccCcEeeec
Confidence              3321 1222221            335699999999999  899999999999997

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.96  E-value=5.4e-06  Score=68.66  Aligned_cols=209  Identities=13%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             EEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           85 QISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        85 ~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      +++|.+ ++  .++++--..+.|..|+..+++... +...  ....+++...++.++++.. +.+.++|+.+++......
T Consensus         4 gp~~d~~~g--~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDG--RLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTT--EEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCC--EEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence            578887 44  567776678999999998775543 4433  2778888745577777776 445555988875544333


Q ss_pred             e---c-ccCCeeEEEEecCCCCeEEEEeCC--------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-
Q 016457          164 E---S-HVEDVTQVHFVPNNQNKVVSASVD--------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-  230 (389)
Q Consensus       164 ~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-  230 (389)
                      .   . .....+.+++.|+|. +.++....        |.|..++.. +     .+......-...+.++|+ ++++.| 
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----~~~~~~~~~~~pNGi~~s-~dg~~ly  149 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----KVTVVADGLGFPNGIAFS-PDGKTLY  149 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----EEEEEEEEESSEEEEEEE-TTSSEEE
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----eEEEEecCcccccceEEC-Ccchhee
Confidence            1   1 335678899999995 77765543        457777776 2     133333334567899999 566555 


Q ss_pred             EEEecCCcEEEEEcCCCce-e---EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          231 WCLTHIETLSIWDWKDGQN-V---ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      ++-+..+.|..|++..... +   ..+.....         .....-.+++..+|+  +.++....+.|.+++.+ ++. 
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~-  216 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKL-  216 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCE-
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccE-
Confidence            5667788999999864322 1   22211110         113467899999887  55666678899999987 554 


Q ss_pred             ccCCCeEEEecccceeeeec
Q 016457          307 TIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~  326 (389)
                           +..+... ...++++
T Consensus       217 -----~~~i~~p-~~~~t~~  230 (246)
T PF08450_consen  217 -----LREIELP-VPRPTNC  230 (246)
T ss_dssp             -----EEEEE-S-SSSEEEE
T ss_pred             -----EEEEcCC-CCCEEEE
Confidence                 4555533 3466666

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.3e-07  Score=78.53  Aligned_cols=242  Identities=11%  Similarity=0.034  Sum_probs=143.0

Q ss_pred             CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|..++|+|... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+.. ++|..|...|.|.|||++..+-
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~-h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER-HVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc-ceeEEeccCceEEEEEccCCCc
Confidence            77899999999886 7888888999999999999999898887 8899999998875 7999999999999999986432


Q ss_pred             -EEEEEc--CCCCeEEEEEeC------CCCeEEEeecCCeEEEEECcC--CceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          117 -VWSVTA--GSQEIFCFSFGG------STDYLLAAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       117 -~~~~~~--~~~~v~~~~~~~------~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                       +..+..  ...+|..++.-+      .++.++.+.  -.+..|.+..  +.....+.....+...+++.++.....|++
T Consensus       271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             hHhhhhhhhccCcceeecccCccccccccceEEeee--hhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence             222222  134555544332      233333322  2344555442  122222221245566677777755434444


Q ss_pred             EeCCCc------EEE-EecCCCCCCCccceee-ecc-CCc-----eeeEEEecCCCcEE-EEEecCCcEEEEEcCCCcee
Q 016457          186 ASVDGL------ICT-FDTGGDINDDDLLESV-INV-GTS-----VGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQNV  250 (389)
Q Consensus       186 ~~~d~~------i~i-~d~~~~~~~~~~~~~~-~~~-~~~-----i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~  250 (389)
                      .-.+..      +-. -|.+.+    .++... ..+ ++.     -....+.+++.+++ ..+...+.+.+||..+++.+
T Consensus       349 yRs~pn~p~~r~il~~~d~~dG----~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv  424 (463)
T KOG1645|consen  349 YRSNPNFPQSRFILGRIDFRDG----FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV  424 (463)
T ss_pred             ecCCCCCccceeeeeeeccccC----ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence            433110      100 011111    011000 000 000     11122222444444 44455679999999999999


Q ss_pred             EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +.+..             ..++.+++...-+..-||++- .|..++||..+
T Consensus       425 Q~l~~-------------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  425 QTLAL-------------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             eeccc-------------CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            88874             267777776554332266555 45668888655

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.94  E-value=5e-06  Score=70.63  Aligned_cols=284  Identities=14%  Similarity=0.105  Sum_probs=136.1

Q ss_pred             eecCCCCeEEEEec---CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           45 VPKNDWSLMAVSLS---TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        45 ~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      +|.+||+.|+.++.   ...+.+.|+.+++..+.-.+.........++|++  +.++-......|+-.|+.+.+....+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC--CeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            47788977766665   4478888999888776555433333356677777  566655556688889999988776666


Q ss_pred             cCCCCeEEEEEe-CCCCeEEEeec----C-------------------CeEEEEECcCCceeeeeeecccCCeeEEEEec
Q 016457          122 AGSQEIFCFSFG-GSTDYLLAAGC----G-------------------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       122 ~~~~~v~~~~~~-~~~~~l~~~~~----d-------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  177 (389)
                      ....-+-...|. ..+...+++..    |                   ..|.-.|+++++....+.  ....+..+.|+|
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP  197 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSP  197 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEET
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCcccCC
Confidence            665555555553 23344444332    1                   245666777777655554  456788899999


Q ss_pred             CCCCeEEEEeC---CC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE-Ee----cCCcEEEEEcCCCc
Q 016457          178 NNQNKVVSASV---DG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC-LT----HIETLSIWDWKDGQ  248 (389)
Q Consensus       178 ~~~~~l~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~----~d~~i~i~d~~~~~  248 (389)
                      ..+.+|+-|.+   +. .-+||-+++......++.... ....+..=-|. ++|..+.- +.    .+..|.-+|+.+++
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            98866666654   22 135666654332223332221 12223333455 55554433 22    13356667777775


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC----------------ceEEEEEeccCCccccCCCe
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA----------------GTVGYFPVNYGGAATIGPPE  312 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d----------------g~i~i~~~~~~~~~~~~~~~  312 (389)
                      .......              ........+++|+  +++.=+.|                -.|+++++..+..       
T Consensus       276 ~~~~~~~--------------p~~~H~~ss~Dg~--L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-------  332 (386)
T PF14583_consen  276 RRRLMEM--------------PWCSHFMSSPDGK--LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-------  332 (386)
T ss_dssp             EEEEEEE---------------SEEEEEE-TTSS--EEEEEE-------------------EEEEEETTTTEE-------
T ss_pred             ceEEEeC--------------CceeeeEEcCCCC--EEEecCCCCCccccccccceecCCcEEEEeccccCce-------
Confidence            5432221              3345666778887  44432222                1456677765543       


Q ss_pred             EEEecccceeeeecc----CCCcccCCCCCCCcee-EEEecCCCeEEEEeccC
Q 016457          313 AVLVGGHTAVVRSVL----PMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       313 ~~~~~~h~~~v~~~~----~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~~  360 (389)
                      ..+. .|.....-+-    ...+..  .|||||++ |+++...|...||-++-
T Consensus       333 ~~l~-~h~~sw~v~~~~~q~~hPhp--~FSPDgk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  333 RKLA-RHDTSWKVLDGDRQVTHPHP--SFSPDGKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             EEEE-E-------BTTBSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred             eeee-eccCcceeecCCCccCCCCC--ccCCCCCEEEEECCCCCCccEEEEeC
Confidence            3332 3432111110    122233  89999987 45667888888887653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=7.2e-09  Score=58.22  Aligned_cols=39  Identities=49%  Similarity=0.791  Sum_probs=36.5

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      |+++..+.+|.+.|++|+|+|++  .+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~--~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG--NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS--SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc--ccceeeCCCCEEEEEC
Confidence            46788999999999999999998  7999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.3e-07  Score=85.80  Aligned_cols=194  Identities=12%  Similarity=0.086  Sum_probs=125.0

Q ss_pred             EEeecCCCCeEEEEec----CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           43 EIVPKNDWSLMAVSLS----TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      -.+|+|...++|+++.    .|.|.||- ++|++..... -.-.+++++|+|..  -.|+.|-.-|.+.+|...+.+.-.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH--HHHhhccccceeEEEecCCceeee
Confidence            4569999999998865    57899985 6677554432 12235679999988  588888888999999988777666


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecc----cCCeeEEEEecCCC-----CeEEEEeC
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESH----VEDVTQVHFVPNNQ-----NKVVSASV  188 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~----~~~v~~~~~~~~~~-----~~l~~~~~  188 (389)
                      ....|..+|..+.|+|+|+.++++..-|.|.+|.......++... ..|    .-...|...++++.     ...++.+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD  175 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD  175 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence            667789999999999999999999999999999876332222211 011    12234555566532     12344444


Q ss_pred             CCcEE-EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          189 DGLIC-TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       189 d~~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +..+- .++.+..    ..-.       ......  .+++..++.++.+|+|+-.|- .+++.....
T Consensus       176 e~alD~~fnwk~~----~a~r-------s~~ksg--v~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k  228 (1416)
T KOG3617|consen  176 ESALDEPFNWKES----LAER-------SDEKSG--VPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHK  228 (1416)
T ss_pred             hhhhcccccCccc----hhhc-------cccccC--CCCCcEEEEEcCCceEEEEcC-CCcEEEEEE
Confidence            44433 4443310    0000       001111  166778888899999887774 355544443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.86  E-value=7e-06  Score=74.89  Aligned_cols=279  Identities=11%  Similarity=0.099  Sum_probs=158.7

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCC------cE--EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS------TV--NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~------~v--~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      +..+++++.++.|.-.|..+|+.+..+.....      .+  ..+... ++  ..++.++.++.|.-+|.++++.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~--~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP--RKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC--CeEEEecCCCeEEEEECCCCCEeeeec
Confidence            34677777789999999999998877653322      01  011121 21  378888899999999999999998887


Q ss_pred             cCCCC-----e-EEEEEeCCCCeEEEee---------cCCeEEEEECcCCceeeeeeecccC------------------
Q 016457          122 AGSQE-----I-FCFSFGGSTDYLLAAG---------CGSQIQFWDWRNKKQVACLEESHVE------------------  168 (389)
Q Consensus       122 ~~~~~-----v-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~------------------  168 (389)
                      .....     + .+..+.  +..+++++         .++.+..+|..+++.+.++......                  
T Consensus       138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            64321     1 122332  35555554         3678999999999988877521111                  


Q ss_pred             -Ce-eEEEEecCCCCeEEEEeCCC------------------cEEEEecCCCCCCCccceeeeccCC----ceeeEEEe-
Q 016457          169 -DV-TQVHFVPNNQNKVVSASVDG------------------LICTFDTGGDINDDDLLESVINVGT----SVGKVGFF-  223 (389)
Q Consensus       169 -~v-~~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~-  223 (389)
                       .+ ...++.+.+. .++.++.++                  .|.-+|..+++..-..  ....+..    ......+. 
T Consensus       216 ~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~--~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         216 GTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFY--QTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEe--eCCCCCCcccccCCCCeEEe
Confidence             01 1344555553 777777665                  6888888877422111  0111100    00001111 


Q ss_pred             --cCCC---cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE----------
Q 016457          224 --GETN---KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG----------  288 (389)
Q Consensus       224 --~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~----------  288 (389)
                        .-++   ..+++++.+|.+..+|.++|+.+-.....               ...+..+|  +.+|+.+          
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---------------~~~~~~~~--~~vyv~~~~~~~~~~~~  355 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---------------EQPMAYDP--GLVYLGAFHIPLGLPPQ  355 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---------------ccccccCC--ceEEEccccccccCccc
Confidence              0122   26788889999999999999988765531               11122333  2222211          


Q ss_pred             ------ecCCceEEEEEeccCCccccCCCeEEEecc-cceeeeeccCC-CcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          289 ------GTGAGTVGYFPVNYGGAATIGPPEAVLVGG-HTAVVRSVLPM-PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       289 ------g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                            ...+|.|.-.|..+++.      +-+...+ +.    ..+.. ...........+..|+.++.||.|+.+|.++
T Consensus       356 ~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~----~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         356 KKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIR----DSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             ccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccc----cccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence                  12467888888888875      2322211 00    00000 0000001112445678888999999999887


Q ss_pred             Ccc
Q 016457          361 SSE  363 (389)
Q Consensus       361 ~~~  363 (389)
                      +.+
T Consensus       426 G~~  428 (488)
T cd00216         426 GKE  428 (488)
T ss_pred             Cce
Confidence            733

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.85  E-value=1.1e-05  Score=76.67  Aligned_cols=241  Identities=12%  Similarity=0.081  Sum_probs=151.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc----cC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT----RS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~----~~  113 (389)
                      ++.|.++.|.-+...++.+...|.|.+-|.++.... ....-...|.+++|+|++  +.++..+.++++.+-.-    -.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchh
Confidence            568999999999999999999999999998775432 222245789999999999  78888888887766432    11


Q ss_pred             C-------------------eEEEEEEcC---------------------CCCeEEEEEeCCCCeEEEeec----C-CeE
Q 016457          114 F-------------------HEVWSVTAG---------------------SQEIFCFSFGGSTDYLLAAGC----G-SQI  148 (389)
Q Consensus       114 ~-------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~----d-~~i  148 (389)
                      .                   +....|.+.                     .+.=+++.|--+|.++++...    + ..|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1                   111122211                     112235889867777776432    4 799


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE  225 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (389)
                      ++||.+ +..-..-. .....-.+++|-|.|. ++++-.   .|+.|.+|.-++- ...............+..++|+ .
T Consensus       225 rV~drE-g~Lns~se-~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wn-s  299 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSE-PVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWN-S  299 (1265)
T ss_pred             EEeccc-chhhcccC-cccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCc-cccccccCCcccccchheeeec-C
Confidence            999966 43322222 3445567899999985 887754   3567888887632 2222223333334459999999 7


Q ss_pred             CCcEEEE---EecCCcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          226 TNKHLWC---LTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       226 ~~~~l~~---~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      ++..|++   ......|++|-+.+..-  .+.+...             . ..-+.|+|.....+.+.+ .+|...++++
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-------------~-~~~~~W~p~~~~~L~v~~-~sG~~~v~~~  364 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-------------Q-KALLMWDPVTEKTLHVLR-ESGQRLVRDF  364 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecCeEEEEEEEEecc-------------c-cccccccCCCceeEEEEe-cCCcEEEEEE
Confidence            7788877   44444699999876532  1222211             1 111778886543233333 5666655554


Q ss_pred             c
Q 016457          301 N  301 (389)
Q Consensus       301 ~  301 (389)
                      .
T Consensus       365 ~  365 (1265)
T KOG1920|consen  365 A  365 (1265)
T ss_pred             E
Confidence            3

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2.8e-07  Score=83.20  Aligned_cols=201  Identities=14%  Similarity=0.119  Sum_probs=134.1

Q ss_pred             EEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457           23 IKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS  102 (389)
Q Consensus        23 i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  102 (389)
                      ++.-.+.+....+...+.+.|++++.  +.|+.|+.+|.|++++.+ +.+ .+...|...      ..+|  .+++||+.
T Consensus        24 lkY~Ri~n~~~~~~~~D~is~~av~~--~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G--ey~asCS~   91 (846)
T KOG2066|consen   24 LKYERISNLVKNFLQNDAISCCAVHD--KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG--EYVASCSD   91 (846)
T ss_pred             ceehhhhcccHHHHhhhHHHHHHhhc--ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC--ceEEEecC
Confidence            33333444444444478888888864  689999999999999976 444 333335544      3455  79999999


Q ss_pred             CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCC-----CCeEEEeecCCeEEEEECcCC-ceee-eeeecccCCeeEEEE
Q 016457          103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS-----TDYLLAAGCGSQIQFWDWRNK-KQVA-CLEESHVEDVTQVHF  175 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~  175 (389)
                      ||+|.|-.+-+.+...++..+ .++.+++++|+     .+++++||.-| +.++.-+-. .... .+. ...++|.++.|
T Consensus        92 DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W  168 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKW  168 (846)
T ss_pred             CCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEe
Confidence            999999999998888887764 89999999987     56788888877 777764321 1111 233 56789999999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCc--cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDD--LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      ..   +++|-++.+| |++||+.+......  +.......+.....+.|. + ...|+.| ...+|+|..++
T Consensus       169 ~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~-~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  169 RG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-D-EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cC---cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-C-CCeEEEe-cCCeEEEEEEe
Confidence            85   4888888665 89999985431100  000111122234567776 3 3355555 44478888776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=1.7e-05  Score=65.46  Aligned_cols=208  Identities=13%  Similarity=0.120  Sum_probs=132.1

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCe-EEEEEccCCeEEEEEEcCCCCe--EEEEEeCCCCeEEEeec-----CCeEEEEEC
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGT-IRAWDTRSFHEVWSVTAGSQEI--FCFSFGGSTDYLLAAGC-----GSQIQFWDW  153 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~  153 (389)
                      ....++.+|... ..++.+-.-|+ ..+||..+++....+......-  -.-.|++++..|+++-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~-~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRP-EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCC-eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            345678888553 57777777664 6789999999887776543322  24689999999998755     489999999


Q ss_pred             c-CCceeeeeeecccCCeeEEEEecCCCCeEEEEeC------------------CCcEEEEecCCCCCCCcccee--e--
Q 016457          154 R-NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV------------------DGLICTFDTGGDINDDDLLES--V--  210 (389)
Q Consensus       154 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~--~--  210 (389)
                      . +.+.+.++. .|.-.-..+.+.|+++ .|+++--                  +-.+...|..++.    .+.+  +  
T Consensus        85 ~~~~~ri~E~~-s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~----ll~q~~Lp~  158 (305)
T PF07433_consen   85 ARGYRRIGEFP-SHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA----LLEQVELPP  158 (305)
T ss_pred             cCCcEEEeEec-CCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc----eeeeeecCc
Confidence            9 667778887 6777778899999996 5555521                  2233444444432    2222  2  


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCc-------EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIET-------LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                      ..|.-+|..+++. .++..++..-..+.       |-+++.  ++.+..+......    | ..-..++-++++++++..
T Consensus       159 ~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~----~-~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  159 DLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ----W-RRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             cccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH----H-HhhCCceEEEEEeCCCCE
Confidence            2355678888887 56655554443331       223322  2222222211100    0 013378999999999882


Q ss_pred             EEEEEecCCceEEEEEeccCCc
Q 016457          284 LWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       +.+|+=..+.+.+||..+++.
T Consensus       231 -ia~tsPrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  231 -IAVTSPRGGRVAVWDAATGRL  251 (305)
T ss_pred             -EEEECCCCCEEEEEECCCCCE
Confidence             235555678999999999876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=4.8e-08  Score=78.31  Aligned_cols=250  Identities=9%  Similarity=0.093  Sum_probs=142.6

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----EEEEEEcCC------------CCeEEEEEeCCC--CeE
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----EVWSVTAGS------------QEIFCFSFGGST--DYL  139 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l  139 (389)
                      ..+.|+++.|...|  .+|++|...|.|.+|.-....     ....|++|.            ..|..+.|..++  ..+
T Consensus        25 ead~ItaVefd~tg--~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDETG--LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEecccc--ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            35679999999888  799999999999999765332     223355552            457778876443  458


Q ss_pred             EEeecCCeEEEEECcCCceeeeee--------ecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceee
Q 016457          140 LAAGCGSQIQFWDWRNKKQVACLE--------ESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       140 ~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~  210 (389)
                      +.++.|.+|++|.+........-+        .+.++++++..-.     .+--.+ .|..|...-.         ....
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l-----~lprls~hd~iiaa~p~---------rvya  168 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL-----LLPRLSEHDEIIAAKPC---------RVYA  168 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh-----hcccccccceEEEeccc---------eecc
Confidence            888899999999987653221111        0112222221100     000000 0111111111         1111


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                      ..|.-.+.++.+. .+.+.++ ++.|-.|.+|++.-...-..+...++....    +-..-|++..|+|....+ +.-.+
T Consensus       169 NaH~yhiNSiS~N-sD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nme----eLteVItSaeFhp~~cn~-fmYSs  241 (460)
T COG5170         169 NAHPYHINSISFN-SDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNME----ELTEVITSAEFHPEMCNV-FMYSS  241 (460)
T ss_pred             ccceeEeeeeeec-Cchheee-eccceeeeeccccccCCceEEEeccCccHH----HHHHHHhhcccCHhHcce-EEEec
Confidence            3466778999997 5555444 456779999998754433333322210000    012457888999986654 45566


Q ss_pred             CCceEEEEEeccCCccccCCCeEE--Ee-------cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          291 GAGTVGYFPVNYGGAATIGPPEAV--LV-------GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       291 ~dg~i~i~~~~~~~~~~~~~~~~~--~~-------~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..|.|++-|++...+-.-...+..  +.       .+-...|.++         .|+++|+|+++-+ =-+|++||++-.
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~---------kFs~ngryIlsRd-yltvkiwDvnm~  311 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF---------KFSDNGRYILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce---------EEcCCCcEEEEec-cceEEEEecccc
Confidence            789999999984432100000010  00       0111234444         8999999999877 468999999854

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=3.1e-06  Score=77.28  Aligned_cols=209  Identities=10%  Similarity=0.146  Sum_probs=130.7

Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC-eEEEEEeCCCCeEEEeecCC-----eEEEEECcCC----
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE-IFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNK----  156 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~----  156 (389)
                      +|++.+  ..++.|+.+|.|.+.+ ++.+.++.++.+... |..+-.......|++.+.|+     .|++||++..    
T Consensus        30 c~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            345555  6999999999887776 334555778877666 55555542335677777643     5999998743    


Q ss_pred             --ceee--eee---e-cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          157 --KQVA--CLE---E-SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       157 --~~~~--~~~---~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                        .++.  .+.   . ....++.+++.+.+-. .+++|-.+|.|..+.-.--........-......+|+.+++. .++.
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~d~~  184 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-SDGK  184 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-cCCc
Confidence              2221  111   1 1356789999999874 999999999999886542111112222233456799999998 5555


Q ss_pred             EEEEEecCCcEEEEEcCCCceeEE-eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457          229 HLWCLTHIETLSIWDWKDGQNVAS-FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT  307 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~  307 (389)
                      .++-......|.+|.+....+... +..            |...+.+..+++.... + ++++ +..+.+|+....+.  
T Consensus       185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~------------~G~~lnCss~~~~t~q-f-Ica~-~e~l~fY~sd~~~~--  247 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSGRTPSLKVLDN------------NGISLNCSSFSDGTYQ-F-ICAG-SEFLYFYDSDGRGP--  247 (933)
T ss_pred             eeEEEEecceeEEEEecCCCcceeeecc------------CCccceeeecCCCCcc-E-EEec-CceEEEEcCCCcce--
Confidence            533333445788999884432222 333            5567778888775442 3 4443 34599999886554  


Q ss_pred             cCCCeEEEecccce
Q 016457          308 IGPPEAVLVGGHTA  321 (389)
Q Consensus       308 ~~~~~~~~~~~h~~  321 (389)
                          ...+..||..
T Consensus       248 ----cfaf~~g~kk  257 (933)
T KOG2114|consen  248 ----CFAFEVGEKK  257 (933)
T ss_pred             ----eeeecCCCeE
Confidence                3444445553

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=3.6e-05  Score=60.80  Aligned_cols=105  Identities=13%  Similarity=0.041  Sum_probs=77.2

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE-EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ-ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  127 (389)
                      -|++++.|+..|.+++.++++|.....+... +.|.+ ....+++  .++..|+.|++....|.++..++.+.+......
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG~~f  138 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF  138 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCCcee
Confidence            4668999999999999999999887777642 22322 2234455  699999999999999999999998887765555


Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  156 (389)
                      .+-+..|-...|+++...|.+.--..+..
T Consensus       139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  139 VSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ccceecCCCceEEEEeccceEEEEccCCC
Confidence            56666765667777776676665554443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=5.2e-08  Score=54.66  Aligned_cols=39  Identities=18%  Similarity=0.338  Sum_probs=36.7

Q ss_pred             CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457          114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD  152 (389)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  152 (389)
                      ++++.++++|...|++++|+|++..+++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.76  E-value=3.7e-05  Score=70.25  Aligned_cols=235  Identities=14%  Similarity=0.121  Sum_probs=137.8

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCc-----E-EEEEEeCCCCCCEEEEEe---------cCCeEEEEEccCCe
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSST-----V-NQISFSGPSTPHVLHSCS---------SDGTIRAWDTRSFH  115 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----v-~~i~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~  115 (389)
                      ..++.++.++.|.-+|.++|+.+..+......     + ....+. ++   .++.++         .++.+..+|..+++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KK---LVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CC---EEEEeccccccccCCCCcEEEEEECCCCc
Confidence            57888888999999999999998877543221     1 112222 23   455553         36789999999999


Q ss_pred             EEEEEEcCCCC--------------------e-EEEEEeCCCCeEEEeecCC------------------eEEEEECcCC
Q 016457          116 EVWSVTAGSQE--------------------I-FCFSFGGSTDYLLAAGCGS------------------QIQFWDWRNK  156 (389)
Q Consensus       116 ~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~  156 (389)
                      .+..++.....                    + ...++.+.++.+++++.++                  .|.-+|++++
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence            99887653110                    1 1234444567788877654                  7999999999


Q ss_pred             ceeeeeeecccC-----CeeEEEEe----cCC--CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457          157 KQVACLEESHVE-----DVTQVHFV----PNN--QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE  225 (389)
Q Consensus       157 ~~~~~~~~~~~~-----~v~~~~~~----~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (389)
                      +.+.++...+..     ......+.    -++  ...++.++.+|.+..+|.+++.........       ...++.. +
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~-~  338 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYD-P  338 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccC-C
Confidence            998876522111     00111111    112  125788888999999999987522111100       1112222 1


Q ss_pred             CCcEEEEE------------------ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          226 TNKHLWCL------------------THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       226 ~~~~l~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                        ..++.+                  ..+|.+.-.|+.+++.+-+.......  ..|..+  .+...-.....++  +|+
T Consensus       339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~--~~~~~g--~~~~~~~~~~~g~--~v~  410 (488)
T cd00216         339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR--DSWNIG--FPHWGGSLATAGN--LVF  410 (488)
T ss_pred             --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc--cccccC--CcccCcceEecCC--eEE
Confidence              122221                  24578888898888877665532100  001000  0111101112344  678


Q ss_pred             EecCCceEEEEEeccCCc
Q 016457          288 GGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~  305 (389)
                      .++.||.|+.+|..+++.
T Consensus       411 ~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         411 AGAADGYFRAFDATTGKE  428 (488)
T ss_pred             EECCCCeEEEEECCCCce
Confidence            888999999999999886

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.76  E-value=7.6e-05  Score=62.44  Aligned_cols=262  Identities=11%  Similarity=0.088  Sum_probs=156.6

Q ss_pred             CeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCC---C----C
Q 016457           21 NSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGH---S----S   81 (389)
Q Consensus        21 ~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~---~----~   81 (389)
                      +.+.++|..+  .+-.+. .+-.-.+..+||++.++++..          ...|.+||..+.++...+.-.   .    .
T Consensus        17 ~rv~viD~d~~k~lGmi~-~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMID-TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE-EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEEee-cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            5788888653  222222 233345678999999987653          347999999988766543211   1    1


Q ss_pred             cEEEEEEeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-CCce
Q 016457           82 TVNQISFSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-NKKQ  158 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~  158 (389)
                      ....++++.++  ++++...  --.+|.|-|+..++.+..+...  .+..+--. .+..+.+-|.||.+.-..+. .|+.
T Consensus        96 ~~~~~~ls~dg--k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   96 YKNMFALSADG--KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             -GGGEEE-TTS--SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             cccceEEccCC--cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCE
Confidence            22345677777  5655543  3456888888888888877763  33333323 23567888889999998887 4554


Q ss_pred             eeeeee---cccCCe-eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec----------cCCceeeEEEec
Q 016457          159 VACLEE---SHVEDV-TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN----------VGTSVGKVGFFG  224 (389)
Q Consensus       159 ~~~~~~---~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~  224 (389)
                      ..+...   ....++ ..-++...+. .++-.+.+|.|+-.|+.....  ........          ..+...-+++++
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~  247 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGGWQLIAYHA  247 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred             eEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcceeeeeecc
Confidence            432211   112222 2334444443 666688899999999985421  11111110          012334577875


Q ss_pred             CCCcEEEEEecCC----------cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          225 ETNKHLWCLTHIE----------TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       225 ~~~~~l~~~~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      ..+.+++.. ..+          .|-+||+.+++.+..+...             ..+.++..+.+.+.++++....++.
T Consensus       248 ~~~rlyvLM-h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------------~~~~Si~Vsqd~~P~L~~~~~~~~~  313 (342)
T PF06433_consen  248 ASGRLYVLM-HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------------HPIDSIAVSQDDKPLLYALSAGDGT  313 (342)
T ss_dssp             TTTEEEEEE-EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------------EEESEEEEESSSS-EEEEEETTTTE
T ss_pred             ccCeEEEEe-cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------------CccceEEEccCCCcEEEEEcCCCCe
Confidence            555444332 221          6888999999999988742             4577899999877654455557899


Q ss_pred             EEEEEeccCCc
Q 016457          295 VGYFPVNYGGA  305 (389)
Q Consensus       295 i~i~~~~~~~~  305 (389)
                      |.+||..+++.
T Consensus       314 l~v~D~~tGk~  324 (342)
T PF06433_consen  314 LDVYDAATGKL  324 (342)
T ss_dssp             EEEEETTT--E
T ss_pred             EEEEeCcCCcE
Confidence            99999999876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=2.6e-06  Score=77.80  Aligned_cols=201  Identities=11%  Similarity=0.143  Sum_probs=132.7

Q ss_pred             ecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCC------
Q 016457           46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSF------  114 (389)
Q Consensus        46 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~------  114 (389)
                      |++.+..++.|+.+|.|.+++- .-+.+..++++...+...-+.-++. .+|++.+.|+     .|+||+++.-      
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            6778889999999999999883 3455677888777733333443442 5888877765     4899998632      


Q ss_pred             eEEE--EEEc-----CCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          115 HEVW--SVTA-----GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       115 ~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      +++.  .+-.     ...++.+++.+.+-..+++|-.+|.|..+.-.   .......+......+|+.+++..++...+.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            3331  1112     25678999999776666666669999988532   111222333245689999999999874344


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +++ -..|.+|.+.+.   .........++.++.+..+++..+++++++  ...+.+|+.........|.
T Consensus       189 v~T-t~~V~~y~l~gr---~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  189 VAT-TEQVMLYSLSGR---TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEe-cceeEEEEecCC---CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeec
Confidence            443 457999999832   123344667788899999985554444443  3479999987655555665

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.73  E-value=1.9e-05  Score=69.03  Aligned_cols=228  Identities=12%  Similarity=0.092  Sum_probs=129.5

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-------------------------------------------eee
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-------------------------------------------GEC   76 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-------------------------------------------~~~   76 (389)
                      .|+.++|.++..-|++|...|.|.||.+...+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999889999999999999865321110                                           112


Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc--------CCCCeEEEEEeC----CC----CeEE
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA--------GSQEIFCFSFGG----ST----DYLL  140 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~----~~----~~l~  140 (389)
                      ....++|++++.+.-|   +++.|..+|.+.|.|++....+..-..        ....++++.|..    ++    -.++
T Consensus        83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            2346889999999777   999999999999999998877765332        134678888762    12    3578


Q ss_pred             EeecCCeEEEEECc-C--Cceeeeee---ecccCCeeEEE-EecCCC-------------------CeEEEEeCCCcEEE
Q 016457          141 AAGCGSQIQFWDWR-N--KKQVACLE---ESHVEDVTQVH-FVPNNQ-------------------NKVVSASVDGLICT  194 (389)
Q Consensus       141 ~~~~d~~i~iwd~~-~--~~~~~~~~---~~~~~~v~~~~-~~~~~~-------------------~~l~~~~~d~~i~i  194 (389)
                      ++...|.+.+|.+- .  +.-...+.   ..+.++|..|. ++.+..                   +-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            88889999999875 1  11111111   13556666655 322210                   12444445778999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEe----cCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFF----GETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      +...+.+    ...+..........+.+.    ...+..|++-..+|.+++|.+...+.+..+.-....        +..
T Consensus       240 ~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~--------d~~  307 (395)
T PF08596_consen  240 FKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL--------DSR  307 (395)
T ss_dssp             E-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----------HH
T ss_pred             EeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc--------ccc
Confidence            9888432    222222222233334442    134567888999999999999988888777643211        224


Q ss_pred             ceeeecccCCCC
Q 016457          271 YFVDCHYPGEGE  282 (389)
Q Consensus       271 ~i~~~~~~~~~~  282 (389)
                      .+....++++|+
T Consensus       308 ~~~~ssis~~Gd  319 (395)
T PF08596_consen  308 RLSSSSISRNGD  319 (395)
T ss_dssp             HHTT-EE-TTS-
T ss_pred             cccccEECCCCC
Confidence            556777888888

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.71  E-value=8e-05  Score=62.30  Aligned_cols=274  Identities=12%  Similarity=0.160  Sum_probs=163.5

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEEEccCCeEEEEEEcCCC-Ce-
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAWDTRSFHEVWSVTAGSQ-EI-  127 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v-  127 (389)
                      +.+.++|.++++.+..+..  +-.-.+..+|++  +.+++++          ..-.|.+||..+..+...+..... .. 
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdg--k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDG--KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTS--SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCC--CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            4799999999998877763  233346678998  5666533          334699999999988887765532 22 


Q ss_pred             -----EEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          128 -----FCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       128 -----~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                           ..++++.+++++++.-.  ...|.+.|+..++.+.++.  -.+   |....|.++.-|.+-|.||.+.-..+...
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS---EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCC---EEEEEecCCCceEEEecCCceEEEEECCC
Confidence                 23567777888777655  5689999999998888876  222   22333444447888889999999998843


Q ss_pred             CCCCccceeee-ccCCce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeeccc-ccccCCccCCCCCceeee
Q 016457          201 INDDDLLESVI-NVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENAR-SLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       201 ~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~  275 (389)
                      .+.......+. ....++ ..-++. ..+..++-.+.+|.|+-.|+......  ..+.... ......|..   +.-.-+
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP---GG~Q~~  243 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP---GGWQLI  243 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE----SSS-E
T ss_pred             CCEeEeeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC---cceeee
Confidence            22221111111 122222 233444 34445555788899999888765422  1221100 001123433   233446


Q ss_pred             cccCCCCeEEEEEe-cCC-------ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEE
Q 016457          276 HYPGEGENLWVIGG-TGA-------GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWT  346 (389)
Q Consensus       276 ~~~~~~~~~~l~~g-~~d-------g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s  346 (389)
                      ++++..+++|++-- +.+       ..|.++|+.+++.      +..+.-  ..++.+|         +.+.|.+ +|++
T Consensus       244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr------v~Ri~l--~~~~~Si---------~Vsqd~~P~L~~  306 (342)
T PF06433_consen  244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR------VARIPL--EHPIDSI---------AVSQDDKPLLYA  306 (342)
T ss_dssp             EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE------EEEEEE--EEEESEE---------EEESSSS-EEEE
T ss_pred             eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE------EEEEeC--CCccceE---------EEccCCCcEEEE
Confidence            77777777665431 111       2577778887765      566652  3456677         6666654 5554


Q ss_pred             -ecCCCeEEEEeccCCcc
Q 016457          347 -GGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       347 -~~~dg~v~iW~~~~~~~  363 (389)
                       ...++.|.+||...+..
T Consensus       307 ~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EETTTTEEEEEETTT--E
T ss_pred             EcCCCCeEEEEeCcCCcE
Confidence             35689999999987733

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.69  E-value=2.1e-05  Score=68.72  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=121.8

Q ss_pred             cCCCCeEEEEec---------CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           47 KNDWSLMAVSLS---------TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        47 ~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      |||+++++....         .+.+.|||+++++....... ...+....|+|++  +.++... ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g--~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDG--KYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSS--TEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCC--CeeEEEe-cCceEEEECCCCCeE
Confidence            578877776432         46799999998765554443 5678899999999  6777765 678999998777544


Q ss_pred             EEEEcCC-----------------CCeEEEEEeCCCCeEEEeec-CCe--------------------------------
Q 016457          118 WSVTAGS-----------------QEIFCFSFGGSTDYLLAAGC-GSQ--------------------------------  147 (389)
Q Consensus       118 ~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~-d~~--------------------------------  147 (389)
                      +.-....                 +.-..+-|+|++.+|+.... +..                                
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np  156 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP  156 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence            3221111                 12346789999998877654 222                                


Q ss_pred             ---EEEEECcCCceee-eee---ecccCCeeEEEEecCCCCeEEEEe--CC---CcEEEEecCCCCCCCccceeeeccCC
Q 016457          148 ---IQFWDWRNKKQVA-CLE---ESHVEDVTQVHFVPNNQNKVVSAS--VD---GLICTFDTGGDINDDDLLESVINVGT  215 (389)
Q Consensus       148 ---i~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~l~~~~--~d---~~i~i~d~~~~~~~~~~~~~~~~~~~  215 (389)
                         +.++|+.+++... ...   ......+..+.|.+++. .|+..-  .+   ..+.++|..++..  ..+. ......
T Consensus       157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~-~e~~~~  232 (353)
T PF00930_consen  157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGET--RVVL-EETSDG  232 (353)
T ss_dssp             EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTC--EEEE-EEESSS
T ss_pred             ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCce--eEEE-EecCCc
Confidence               2233443333211 000   01233477888988874 344433  22   2366777765431  1111 122222


Q ss_pred             ce---eeEEEe-cCCCcEEEEEecCC--cEEEEEcCCCceeEEeecccccccCCccCCCCCcee-eecccCCCCeEEEEE
Q 016457          216 SV---GKVGFF-GETNKHLWCLTHIE--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV-DCHYPGEGENLWVIG  288 (389)
Q Consensus       216 ~i---~~~~~~-~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~  288 (389)
                      .|   ....+. +.+..++.....+|  .|.+++...+. ...+...            .-.|. -+.++++++.+|+ +
T Consensus       233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G------------~~~V~~i~~~d~~~~~iyf-~  298 (353)
T PF00930_consen  233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG------------DWEVTSILGWDEDNNRIYF-T  298 (353)
T ss_dssp             SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S------------SS-EEEEEEEECTSSEEEE-E
T ss_pred             ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC------------ceeecccceEcCCCCEEEE-E
Confidence            32   244554 56667777777887  55566665554 3344331            13443 4677888776543 4


Q ss_pred             ecC
Q 016457          289 GTG  291 (389)
Q Consensus       289 g~~  291 (389)
                      +..
T Consensus       299 a~~  301 (353)
T PF00930_consen  299 ANG  301 (353)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.68  E-value=1.6e-08  Score=88.77  Aligned_cols=200  Identities=17%  Similarity=0.204  Sum_probs=134.2

Q ss_pred             CcceEEEeecCCC--CeEEEEecCCeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEe----cCCeEEEE
Q 016457           38 DDYVFEIVPKNDW--SLMAVSLSTNVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCS----SDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----~dg~i~iw  109 (389)
                      ...+.|+++..+.  .++++|..+|.|-+-.+.....  .....+|....++++|++-.. +.||.|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH-HHHHhhhhhhcccCCccce
Confidence            4567788766543  5889999999999988764322  233456888999999998753 4666663    35679999


Q ss_pred             EccCC--eEE--EEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeE
Q 016457          110 DTRSF--HEV--WSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       110 d~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      |+.++  .+.  ..|.. ......+++|..+.+.+++|.....+.++|+|... ....+   .+..+..+...|-..+++
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCce
Confidence            99876  222  22222 23456688888666777777778899999998432 22232   345677788888554577


Q ss_pred             EEEeCCCcEEEEe-cCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecC-CcEEEEEcC
Q 016457          184 VSASVDGLICTFD-TGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHI-ETLSIWDWK  245 (389)
Q Consensus       184 ~~~~~d~~i~i~d-~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~  245 (389)
                      ++-. ||.|.+|| .+.-   ..++..+.    .....+..++|+|.....+++...| ++|++||+.
T Consensus       212 cs~~-dg~iAiwD~~rni---enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNI---ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhh---ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6655 99999999 4421   12222222    2233589999997666667777665 589999986

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=6.4e-05  Score=66.78  Aligned_cols=223  Identities=13%  Similarity=0.127  Sum_probs=116.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .-....++++|+|+++++++ +|.-.|+.....+...     .+.-...+|.+.+   .+|+-...++|.|+.--+.+..
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n---~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN---RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS---EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc---cEEEEECCCeEEEEEcCccccc
Confidence            45578999999999999965 8888888844333322     2344568899855   6888887889999732222222


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      ..++.. ..+..+-.   |..|++.+ ++.|.+||+.+++.+.++.  .. +|..+.|++++. +++..+.+ .+.+++.
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~-~val~t~~-~i~il~~  172 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRID--VS-AVKYVIWSDDGE-LVALVTKD-SIYILKY  172 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S--SEEEEEE
T ss_pred             eEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCC-EEEEEeCC-eEEEEEe
Confidence            344432 23444433   55555554 4689999999999999987  22 389999999995 77777744 7888877


Q ss_pred             CCC------C-CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--eEEeecccccccCCccCCC
Q 016457          198 GGD------I-NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDD  268 (389)
Q Consensus       198 ~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~  268 (389)
                      ...      . ...............|.+.+|. .+  .++-.+.. .|+.  +..|+.  +..+.              
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--------------  232 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED--CFIYTTSN-HLKY--LVNGETGIIAHLD--------------  232 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT--EEEEE-TT-EEEE--EETTEEEEEEE-S--------------
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEE-cC--EEEEEcCC-eEEE--EEcCCcceEEEcC--------------
Confidence            621      0 0001233333336788899997 44  33333333 6665  333432  22222              


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                       .++.-+.+.+..+  .+.....|+.+..+.+..
T Consensus       233 -~~~yllgy~~~~~--~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 -KPLYLLGYLPKEN--RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -S--EEEEEETTTT--EEEEE-TT--EEEEE--H
T ss_pred             -CceEEEEEEccCC--EEEEEECCCCEEEEEECH
Confidence             3445555666556  445666788888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=0.00013  Score=57.72  Aligned_cols=142  Identities=8%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeE-
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF-  128 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-  128 (389)
                      ..+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -+  ++++.|+..|.+.+.+.++|...+.+..- +.|. 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeeeeh-hhhcc
Confidence            4688889999999999999998776532 22334433333 24  58999999999999999999888887764 3333 


Q ss_pred             EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       129 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .....++++.+..++.|+..+..|.++...+...+ .......+-+..|-.. .|..+...|.+.-....
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~-sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDG-SLYAAITAGAVLAVTKN  165 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCc-eEEEEeccceEEEEccC
Confidence            33455678899999999999999999999998877 4444444556666332 45555556666555554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.59  E-value=8.3e-05  Score=67.34  Aligned_cols=230  Identities=11%  Similarity=-0.045  Sum_probs=132.3

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecC-------------CCCcEE-------EEEEe----C---------CCCCCEEE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKG-------------HSSTVN-------QISFS----G---------PSTPHVLH   98 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~-------------~~~~v~-------~i~~~----~---------~~~~~~l~   98 (389)
                      .|.+|+..|.++|+-+.+++.+..+..             .+..|.       .+.|-    |         +|  ++|+
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydG--r~~f  145 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDG--RYLF  145 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccce--eEEE
Confidence            467888899999999888876665421             011111       01110    0         22  4555


Q ss_pred             EEec-CCeEEEEEccCCeEEEEEEcC-CCCeEEEEEe--CCCCeEEEeec------------------CCeEEEEECcCC
Q 016457           99 SCSS-DGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFG--GSTDYLLAAGC------------------GSQIQFWDWRNK  156 (389)
Q Consensus        99 s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~------------------d~~i~iwd~~~~  156 (389)
                      .-.. +..|...+++..++-+.+... ...+..+.+-  |+..++++.+.                  .+.+.+.|..+.
T Consensus       146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm  225 (635)
T PRK02888        146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM  225 (635)
T ss_pred             EecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence            5442 445555565555444433322 2223333332  33333333332                  456777888877


Q ss_pred             ceeeeeeecccCCeeEEEEecCCCCeEEEEe----------------------------------------CCCcEEEEe
Q 016457          157 KQVACLEESHVEDVTQVHFVPNNQNKVVSAS----------------------------------------VDGLICTFD  196 (389)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------------------------------------~d~~i~i~d  196 (389)
                      +...++.  -......++++|+++ ++++.+                                        .++.|.+.|
T Consensus       226 eV~~qV~--Vdgnpd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID  302 (635)
T PRK02888        226 EVAWQVM--VDGNLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVD  302 (635)
T ss_pred             eEEEEEE--eCCCcccceECCCCC-EEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEE
Confidence            7776665  223446677888876 555553                                        123466666


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCce------------eEEeecccccccCC
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQN------------VASFENARSLASDS  263 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~  263 (389)
                      .++..+....+............+.++ |+++++++++ .+.++.++|+.+.+.            ..+..-        
T Consensus       303 ~~t~~~~~~~v~~yIPVGKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--------  373 (635)
T PRK02888        303 GRKAANAGSALTRYVPVPKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--------  373 (635)
T ss_pred             CCccccCCcceEEEEECCCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--------
Confidence            664111112344445566777889999 6777666555 488999999987553            222211        


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                           .......+|.++|.  ...+-.-|..|..|++..
T Consensus       374 -----GlGPLHTaFDg~G~--aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 -----GLGPLHTAFDGRGN--AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -----CCCcceEEECCCCC--EEEeEeecceeEEEehHH
Confidence                 13345678888887  557788899999999986

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=9e-06  Score=73.83  Aligned_cols=192  Identities=7%  Similarity=0.079  Sum_probs=134.7

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV  159 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  159 (389)
                      ...+.|++++.    +.|+-|..+|.|++.+.. +.+ .+...|...      ...|.++++++.||+|.|..+-+.+..
T Consensus        39 ~D~is~~av~~----~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVHD----KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhhc----ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence            45677777762    589999999999999875 333 333444332      447999999999999999999888888


Q ss_pred             eeeeecccCCeeEEEEecC----CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457          160 ACLEESHVEDVTQVHFVPN----NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      .++.  ...++.+++++|+    ....+++|+.-| +.++.-+--. .... .......++|.++.|.   +++++-++.
T Consensus       107 ~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~-v~l~~~eG~I~~i~W~---g~lIAWand  178 (846)
T KOG2066|consen  107 TQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-NKDS-VVLSEGEGPIHSIKWR---GNLIAWAND  178 (846)
T ss_pred             eeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-Cccc-eeeecCccceEEEEec---CcEEEEecC
Confidence            7776  6789999999998    123799999888 7777655211 1111 1344567899999997   457777666


Q ss_pred             CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      +| |++||+.+++.+..+........      .+.....+.|.++.+   |+.| ..-+|+|..+..
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R------~e~fpphl~W~~~~~---LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVR------PELFPPHLHWQDEDR---LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCC------cccCCCceEecCCCe---EEEe-cCCeEEEEEEec
Confidence            65 88999999888877764331111      223345677877654   4555 555799998883

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.56  E-value=0.0002  Score=58.29  Aligned_cols=202  Identities=13%  Similarity=0.126  Sum_probs=115.2

Q ss_pred             eeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           33 QTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      +.+.+ ...+..++|+|+.+ ++++....+.|..++.+ |+.+..+.-. .+..-.|++..++  .++++--.++.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIF   91 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEE
Confidence            34555 56699999999755 66666667888888864 7877776432 3567889998777  566665568999999


Q ss_pred             EccCC------eEEEEEE-----cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC---Cceeeeee-------ecccC
Q 016457          110 DTRSF------HEVWSVT-----AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN---KKQVACLE-------ESHVE  168 (389)
Q Consensus       110 d~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~-------~~~~~  168 (389)
                      ++...      .....+.     .++..+..++|+|.++.++++-......+|.++.   ...+....       .....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            88422      1122222     2356799999999999999987766666666653   11111111       12345


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-------cCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-------VGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      .+.+++++|...++++....+..|.++|.....   .....+..       .-...-.|+|. ++|. |+..+.-+..++
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~---~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~-LYIvsEpNlfy~  246 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRV---VSSLSLDRGFHGLSKDIPQPEGIAFD-PDGN-LYIVSEPNLFYR  246 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE-TT--E---EEEEE-STTGGG-SS---SEEEEEE--TT---EEEEETTTEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEECCCCCE---EEEEEeCCcccCcccccCCccEEEEC-CCCC-EEEEcCCceEEE
Confidence            688999999987688888888899999966321   11111111       01246788998 5664 555556555555


Q ss_pred             E
Q 016457          242 W  242 (389)
Q Consensus       242 ~  242 (389)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=8.1e-07  Score=74.98  Aligned_cols=216  Identities=11%  Similarity=0.044  Sum_probs=139.1

Q ss_pred             CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC--C-ceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecC
Q 016457          123 GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN--K-KQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTG  198 (389)
Q Consensus       123 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~  198 (389)
                      |...|+.+... ..+.++.++.||.++.|--..  + +.+..+. .|...|.+++.+-++- ++.+.+. |..++++|+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence            56777777766 677889999999999997543  2 2344454 7888999999999984 8888777 9999999998


Q ss_pred             CCCCCCccceeeeccCCceeeEEEecCCC---cEEE-EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          199 GDINDDDLLESVINVGTSVGKVGFFGETN---KHLW-CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      .-.     +............+.|.-..+   ..++ +.-.++.+.++|-....+..-+....          |..+|..
T Consensus        85 n~D-----minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl----------H~sPV~~  149 (558)
T KOG0882|consen   85 NFD-----MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL----------HFSPVKK  149 (558)
T ss_pred             ccc-----hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc----------ccCceEE
Confidence            421     111111222222233321222   1233 33456799999976554333332222          8899999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEecc-CCccccCCCeEEEecccceeeeecc-CCCcccCCCCCCCceeEEEecCCCe
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNY-GGAATIGPPEAVLVGGHTAVVRSVL-PMPSVQGRPAQSHGIFGWTGGEDGR  352 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~s~~~~~l~s~~~dg~  352 (389)
                      +.+.+-++  .+++....|.|.-|.... .+. ........+  -|........ ......+..|+|+|..+.+-+.|.+
T Consensus       150 i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qf-Pr~~l~~~~--K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk  224 (558)
T KOG0882|consen  150 IRYNQAGD--SAVSIDISGMVEYWSAEGPFQF-PRTNLNFEL--KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK  224 (558)
T ss_pred             EEeecccc--ceeeccccceeEeecCCCcccC-ccccccccc--cccchhhcccccccCccceEEccccCcccccCcccE
Confidence            99999998  678888899999998874 111 000011111  2332222221 1111222389999999999999999


Q ss_pred             EEEEeccCC
Q 016457          353 LCCWLSDDS  361 (389)
Q Consensus       353 v~iW~~~~~  361 (389)
                      ||++.+..+
T Consensus       225 VR~F~~KtG  233 (558)
T KOG0882|consen  225 VRGFVFKTG  233 (558)
T ss_pred             EEEEEeccc
Confidence            999999877

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.54  E-value=3.6e-05  Score=69.11  Aligned_cols=154  Identities=10%  Similarity=0.107  Sum_probs=103.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|.--+++..+++++.|++.|.+++|+-..++....- .+-.+.+..+..+++.  .++|.|+..|.|.++.+....+
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccCC
Confidence            344444456677889999999999999997765543322 2244556667778777  6888899999999998876432


Q ss_pred             E-----EEE-EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC----ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          117 V-----WSV-TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK----KQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       117 ~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      -     ... +.|+..|++++|++++..+++|...|+|.+-.+.+.    -..+.+. ...+.|..+.....   +|+++
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q~---~LLVS  186 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQS---YLLVS  186 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeecccc---eehHh
Confidence            1     111 235788999999999999999999999999888762    1122232 34566777776653   33333


Q ss_pred             eCCCcEEEEecC
Q 016457          187 SVDGLICTFDTG  198 (389)
Q Consensus       187 ~~d~~i~i~d~~  198 (389)
                      +.- ...+++..
T Consensus       187 tl~-r~~Lc~tE  197 (726)
T KOG3621|consen  187 TLT-RCILCQTE  197 (726)
T ss_pred             hhh-hhheeecc
Confidence            322 23455555

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=0.00075  Score=60.71  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=137.0

Q ss_pred             EEEeecCCCCeEEEEec-CC----eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----------e
Q 016457           42 FEIVPKNDWSLMAVSLS-TN----VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----------T  105 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~-d~----~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----------~  105 (389)
                      ..++++|+|+++|.+-+ .|    .++++|+++|+.+...-... ....+.|.+++  +.|+....+.           .
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~--~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDG--KGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTS--SEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCC--CEEEEEEeCcccccccCCCCcE
Confidence            36789999999987744 34    69999999997765321111 12239999998  4554443222           3


Q ss_pred             EEEEEccCCeE--EEEEEcCCCC--eEEEEEeCCCCeEEEeec---C-CeEEEEECcCC----ceeeeeeecccCCeeEE
Q 016457          106 IRAWDTRSFHE--VWSVTAGSQE--IFCFSFGGSTDYLLAAGC---G-SQIQFWDWRNK----KQVACLEESHVEDVTQV  173 (389)
Q Consensus       106 i~iwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~~~~~~~~v~~~  173 (389)
                      |..|.+.+...  ...+......  ...+..++++++++....   + ..+.+.|+..+    .....+. .....+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~  282 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYY  282 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEE
Confidence            77788776532  3445444333  568888988888776554   3 56888888764    2333443 233334333


Q ss_pred             EEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCC--cEEEEEcCC
Q 016457          174 HFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIE--TLSIWDWKD  246 (389)
Q Consensus       174 ~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~  246 (389)
                      .-+..+. +++...   ..+.|...++..... ......+..+..  .+..+...  .+.+++....++  .|+++++..
T Consensus       283 v~~~~~~-~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~  358 (414)
T PF02897_consen  283 VDHHGDR-LYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDD  358 (414)
T ss_dssp             EEEETTE-EEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-
T ss_pred             EEccCCE-EEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCC
Confidence            3333332 444332   246677777774321 011123444444  45666654  334555555555  788999883


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--ceEEEEEeccCCc
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGA  305 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~  305 (389)
                      +.....+...           ..+.+..+...++++.+++...+.-  ++++.||+.+++.
T Consensus       359 ~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  359 GKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4444444321           2244666777777777666555554  6788888888775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.50  E-value=3.4e-08  Score=86.71  Aligned_cols=208  Identities=13%  Similarity=0.128  Sum_probs=135.2

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCCeEEEeec-----CCeEEEEE
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWD  152 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd  152 (389)
                      ...+.|+++.-+...-.++.|..+|.|.+-.++...-.  .....+....++++|++-+...+++|.     |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34577787765553247888999999999888754332  234456788999999987777777776     57899999


Q ss_pred             CcCC--ceee--eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          153 WRNK--KQVA--CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       153 ~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      +.++  .+..  .+..+......+++|..+.+ ++++|...+.+.++|+|...     .....-....+..+...|-.+.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL-----DSVSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh-----hhhhhhhhhhcccceecCCCCC
Confidence            9876  2222  22211334566888987775 89999999999999999321     1111112235666777755667


Q ss_pred             EEEEEecCCcEEEEEc-CCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          229 HLWCLTHIETLSIWDW-KDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ++++.. |+.|.+||. .+-+ ++..+.....        .....+..++|.|...++..+..-..++|+.+++..
T Consensus       210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N--------~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNEN--------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeccc-cCceeeccchhhhccHHHHHhhCCC--------CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            777665 999999993 3222 2222211100        022458899999987664444444558999998764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.49  E-value=0.00023  Score=57.89  Aligned_cols=213  Identities=10%  Similarity=0.107  Sum_probs=116.8

Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEee-cCCeEEEEE
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAG-CGSQIQFWD  152 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  152 (389)
                      .+.+-...+..|+|.|+.. .++++....+.|...+. +|+.++.+... .+....|++..++ .++.+. .++.+.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~-tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTG-TLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFT   92 (248)
T ss_dssp             E-TT--S-EEEEEEETTTT-EEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCC-eEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEE
Confidence            4455556799999999863 57777778888888886 57888887755 4678899998444 554444 489999998


Q ss_pred             CcCCc------eeeeee----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc-ccee------eeccCC
Q 016457          153 WRNKK------QVACLE----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD-LLES------VINVGT  215 (389)
Q Consensus       153 ~~~~~------~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~------~~~~~~  215 (389)
                      +....      ....+.    ..+...+..++|+|.+. .|+.+-...-..+|.++....... ....      ....-.
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            84321      112222    12445689999999985 777777666677777763110000 0000      111234


Q ss_pred             ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          216 SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      .+.+++++|..+.+++.+.....|..+| .+|+.+..+.-........   ......-.++|.++|+  +.++ ++-+..
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~---~~~~QpEGIa~d~~G~--LYIv-sEpNlf  244 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS---KDIPQPEGIAFDPDGN--LYIV-SEPNLF  244 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S---S---SEEEEEE-TT----EEEE-ETTTEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc---cccCCccEEEECCCCC--EEEE-cCCceE
Confidence            5788999988888888888889999999 6687776655322110000   0113466788999885  3333 355555


Q ss_pred             EEE
Q 016457          296 GYF  298 (389)
Q Consensus       296 ~i~  298 (389)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.49  E-value=0.00011  Score=64.53  Aligned_cols=209  Identities=9%  Similarity=0.050  Sum_probs=116.6

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-------------------------------------------eEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------------------------------------------HEVW  118 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------------------------~~~~  118 (389)
                      .|+.+.|.++.  .-|+.|...|.|.||.....                                           .+..
T Consensus         3 ~v~~vs~a~~t--~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAPET--LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEETTT--TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecCCC--ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            47788888776  57888888888888765321                                           1222


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-------ecccCCeeEEEEec-----CC--CCeEE
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-------ESHVEDVTQVHFVP-----NN--QNKVV  184 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~-----~~--~~~l~  184 (389)
                      .++...++|++++.+ +=+.++++..+|.+.|.|+|....+..-.       ......++++.|.-     ++  .-.++
T Consensus        81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            233346899999998 77888889989999999999877765522       11234678888862     11  12789


Q ss_pred             EEeCCCcEEEEecCC-CCCCC--ccceeeeccCCceeeEEEe-cCC-------------------CcEEEEEecCCcEEE
Q 016457          185 SASVDGLICTFDTGG-DINDD--DLLESVINVGTSVGKVGFF-GET-------------------NKHLWCLTHIETLSI  241 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~-~~~~~--~~~~~~~~~~~~i~~~~~~-~~~-------------------~~~l~~~~~d~~i~i  241 (389)
                      +|+..|.+.+|.+.. .....  ........+.++|..+... ...                   -.-+++...+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            999999999998862 11000  1111112455666555532 110                   012455556778999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccC---CCCeEEEEEecCCceEEEEEeccCCc
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG---EGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +...+.+..+....            .......+.+.+   ......|++-..+|.|++|.+..-+.
T Consensus       240 ~~~~~~k~~~K~~~------------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  240 FKPPKSKGAHKSFD------------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             E-TT---EEEEE-S------------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             EeCCCCcccceeec------------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            99988777665543            112233344432   11223678888999999999987544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.47  E-value=4.1e-05  Score=72.93  Aligned_cols=177  Identities=15%  Similarity=0.172  Sum_probs=113.9

Q ss_pred             cCCCCeEEEEecCceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC----C-------------------ce
Q 016457           17 CDNVNSIKRFGLKNSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----T-------------------GQ   71 (389)
Q Consensus        17 ~~~~~~i~~w~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----~-------------------~~   71 (389)
                      ...+|.|.+-|..+....+.|  ..+|.+++|+||...++..+..+++.+-+-.    .                   |+
T Consensus        86 ~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr  165 (1265)
T KOG1920|consen   86 ITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR  165 (1265)
T ss_pred             EecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc
Confidence            345566666666665555666  8999999999999999999887777765420    0                   01


Q ss_pred             eeeeecCCC---------------------CcEEEEEEeCCCCCCEEEEEe----cC-CeEEEEEccCCeEEEEEEcCCC
Q 016457           72 YSGECKGHS---------------------STVNQISFSGPSTPHVLHSCS----SD-GTIRAWDTRSFHEVWSVTAGSQ  125 (389)
Q Consensus        72 ~~~~~~~~~---------------------~~v~~i~~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~  125 (389)
                      ....|+|..                     +.=+.|.|.-+|  +++++..    .+ ..|++||-+ |..-..-.....
T Consensus       166 keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~  242 (1265)
T KOG1920|consen  166 KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG  242 (1265)
T ss_pred             cceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEEEeccc-chhhcccCcccc
Confidence            111222111                     112358898888  7888732    23 789999966 433222222234


Q ss_pred             CeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceee----eeeecccCCeeEEEEecCCCCeEEE---EeCCCcEEEE
Q 016457          126 EIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVA----CLEESHVEDVTQVHFVPNNQNKVVS---ASVDGLICTF  195 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~---~~~d~~i~i~  195 (389)
                      .=.+++|-|.|..+++...   |+.|.+|.- +|-.-.    .+. .....+..++|+.++. .|++   ......|++|
T Consensus       243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p-~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFP-LDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCc-ccccchheeeecCCCC-ceeeeecccccceEEEE
Confidence            4568999998888888654   678999873 343222    222 2334499999999985 7777   4445559999


Q ss_pred             ecCC
Q 016457          196 DTGG  199 (389)
Q Consensus       196 d~~~  199 (389)
                      -+.+
T Consensus       320 t~~N  323 (1265)
T KOG1920|consen  320 TTGN  323 (1265)
T ss_pred             EecC
Confidence            8873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=1.9e-05  Score=72.40  Aligned_cols=262  Identities=14%  Similarity=0.191  Sum_probs=147.2

Q ss_pred             CCCeEEEEe-cCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457           19 NVNSIKRFG-LKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL   97 (389)
Q Consensus        19 ~~~~i~~w~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l   97 (389)
                      ..|+|.||- .+++.+...-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|  ..+
T Consensus        39 r~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G--~~l  116 (1416)
T KOG3617|consen   39 RGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG--TVL  116 (1416)
T ss_pred             CCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC--CeE
Confidence            346777663 33433322224556789999999899999999999999988777666667799999999999999  799


Q ss_pred             EEEecCCeEEEEEccCCeEEEE--EEcC--CCCeE--EEEEeCCCC------eEEEeecCCeEE-EEECcCCceeeeeee
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWS--VTAG--SQEIF--CFSFGGSTD------YLLAAGCGSQIQ-FWDWRNKKQVACLEE  164 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~--~~~~--~~~v~--~~~~~~~~~------~l~~~~~d~~i~-iwd~~~~~~~~~~~~  164 (389)
                      +++..-|.|.+|....-..+..  +-.|  ...++  |...++++.      ..++++.+..+- .++.+....-.... 
T Consensus       117 ~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-  195 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-  195 (1416)
T ss_pred             EEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-
Confidence            9999999999998763222211  1112  23333  444454432      234455544433 33333211111111 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                       |.+       .|+| ..++.++.+|+|+..|-...      ........+.| .+-|.+ ....+.+...+-++.++-.
T Consensus       196 -ksg-------v~~g-~~F~~~~~~GtVyyvdq~g~------~~~V~k~dS~v-QmLf~~-~~eai~~i~e~lr~~l~~v  258 (1416)
T KOG3617|consen  196 -KSG-------VPKG-TEFLFAGKSGTVYYVDQNGR------QRTVHKLDSEV-QMLFMG-YCEAISIIIEFLRDCLIFV  258 (1416)
T ss_pred             -ccC-------CCCC-cEEEEEcCCceEEEEcCCCc------EEEEEEccchH-HHHHhc-ccceEEEEeeeceeeEEEe
Confidence             111       3667 48888889999998886632      22222222221 122221 1122222222222222211


Q ss_pred             -CCCcee----EEee---ccc----------c--cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          245 -KDGQNV----ASFE---NAR----------S--LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       245 -~~~~~~----~~~~---~~~----------~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                       .+|...    ..+.   +.+          .  .....+.......+.+++++..+.  .|+.|...|.+.+|.-..
T Consensus       259 ~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~--~l~agt~~gnv~~w~~v~  334 (1416)
T KOG3617|consen  259 LAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI--RLWAGTKEGNVTIWLDVN  334 (1416)
T ss_pred             cCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce--EEEecccCCcEEEeeecC
Confidence             111100    0000   000          0  001112233557899999999887  779999999999995443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=0.00018  Score=65.32  Aligned_cols=224  Identities=10%  Similarity=0.044  Sum_probs=130.3

Q ss_pred             ecCCCCeEEEEe-cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC----CeEEEEEccCCeEEEEE
Q 016457           46 PKNDWSLMAVSL-STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD----GTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        46 ~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~  120 (389)
                      +.|||+.+...+ ..+.+.+.|.++.+...++..- +....+.+++++  .++++.+.+    .++..-+..+...+..+
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdG--k~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDG--KYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCC--CEEEEeccCcccCcceeeeccccCceEEEE
Confidence            445665443322 2456777787777666665432 244667888888  577666532    23333333222222222


Q ss_pred             EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-----CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEE
Q 016457          121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-----KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF  195 (389)
Q Consensus       121 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~  195 (389)
                      ...  .+.  ++.+++++...  .++.|.+.|.++     .+.+..+.  -......+.++|+|+..++++..+.+|.++
T Consensus       277 ni~--~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        277 NIA--RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             chH--HHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence            211  011  22335666555  357899999998     34555554  567788999999998666667779999999


Q ss_pred             ecCCCCCC-------CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----------ceeEEeecccc
Q 016457          196 DTGGDIND-------DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----------QNVASFENARS  258 (389)
Q Consensus       196 d~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~  258 (389)
                      |+.+....       ...+.............+|. .++....+..-|..|..||+...          ..+..+.-+  
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD-g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~--  425 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD-GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH--  425 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeeccCCCcceEEEC-CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC--
Confidence            99854310       01111112223344567887 66778888888999999998752          222222221  


Q ss_pred             cccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          259 LASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                           ...+|......=.-.|+|+  ||++..
T Consensus       426 -----y~pgh~~~~~g~t~~~dgk--~l~~~n  450 (635)
T PRK02888        426 -----YQPGHNHASMGETKEADGK--WLVSLN  450 (635)
T ss_pred             -----CccceeeecCCCcCCCCCC--EEEEcc
Confidence                 1122444444445577888  777763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.41  E-value=9e-05  Score=65.51  Aligned_cols=115  Identities=12%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             CCeEEEEEeCCCC-eEEEeec----CCe----EEEEECcCCce--eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          125 QEIFCFSFGGSTD-YLLAAGC----GSQ----IQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       125 ~~v~~~~~~~~~~-~l~~~~~----d~~----i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      ....++.|+-..+ .+.+...    +|.    -.+|++..++.  +....-..+..+.|.+++|+.. .++.|+.||.|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence            4446777775443 3444322    332    35566654432  2222224788999999999996 999999999999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      +||...+      +.......-.++.++|+ +++.++++|+..|.+.+||+.-.
T Consensus       285 LyD~~~~------~t~~~ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRG------VTLLAKAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCC------eeeeeeecccceEEEEc-CCCcEEEEEcCCceEEEEEeecC
Confidence            9999844      33344455677899999 78899999999999999998643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.36  E-value=0.0012  Score=57.07  Aligned_cols=176  Identities=12%  Similarity=0.100  Sum_probs=106.5

Q ss_pred             CeEEEEeCCCceeeeeecC-CCCcEEEEE---EeCCC--CCCEEEEEec----------CCeEEEEEccCC----eEEEE
Q 016457           60 NVVKLYSPVTGQYSGECKG-HSSTVNQIS---FSGPS--TPHVLHSCSS----------DGTIRAWDTRSF----HEVWS  119 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~-~~~~v~~i~---~~~~~--~~~~l~s~~~----------dg~i~iwd~~~~----~~~~~  119 (389)
                      ..|++.|..+.+.+..+.- ..+.+.+++   +..+.  ...+|+.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588888887776655432 233444444   33221  1257887764          288999999884    22222


Q ss_pred             EE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          120 VT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       120 ~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      +.  ..+++|++++--  +++++++. ++.|.+|++...+ ....-.......++++...  + ++++.|.....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEE
Confidence            21  126889999876  44544444 4899999999877 4333321233356666655  4 4899999888899886


Q ss_pred             cCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          197 TGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       197 ~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      .+..   ...+..+  ......+.++.+.+ +++.++++..+|.+.++...
T Consensus       156 ~~~~---~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  156 YDEE---NNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETT---TE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred             EEcc---CCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence            6521   1112222  22345688888873 44689999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=1.9e-05  Score=69.57  Aligned_cols=116  Identities=10%  Similarity=0.003  Sum_probs=81.4

Q ss_pred             CcceEEEeecC-CCCeEEEEe----cCCe----EEEEeCCCceee----eeecCCCCcEEEEEEeCCCCCCEEEEEecCC
Q 016457           38 DDYVFEIVPKN-DWSLMAVSL----STNV----VKLYSPVTGQYS----GECKGHSSTVNQISFSGPSTPHVLHSCSSDG  104 (389)
Q Consensus        38 ~~~v~~~~~~~-~~~~l~~~~----~d~~----i~iw~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg  104 (389)
                      .....++.|+. +...+.+..    .+|.    -.+|+...++..    .++ .....|.+++++|+.  +.|+.|+.||
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E--~kLvlGC~Dg  281 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE--DKLVLGCEDG  281 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc--ceEEEEecCC
Confidence            33446777775 333444332    2332    345666544322    122 367789999999999  7999999999


Q ss_pred             eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457          105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      +|.+||...+.....  ...-..+.++|+|++..+++++..|.+.+||+.-...
T Consensus       282 SiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  282 SIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             eEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            999999876643322  3346788999999999999999999999999875443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.27  E-value=0.0029  Score=58.33  Aligned_cols=148  Identities=12%  Similarity=0.090  Sum_probs=93.8

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecC--CCC--cEEE-EEEeCCCCCCEEEEEe------cCCeEEEEEccCCeEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKG--HSS--TVNQ-ISFSGPSTPHVLHSCS------SDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~--~v~~-i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~  119 (389)
                      ..++.++.++.+.-.|..+|+.+.....  +..  .+.+ -... ++   .++.+.      .+|.|..+|.++|+.+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g---~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG---KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC---EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            4677788899999999999998877642  111  1111 1111 33   455543      268999999999998877


Q ss_pred             EEcCCC-------------------------------CeE-EEEEeCCCCeEEEeecC-----C-----------eEEEE
Q 016457          120 VTAGSQ-------------------------------EIF-CFSFGGSTDYLLAAGCG-----S-----------QIQFW  151 (389)
Q Consensus       120 ~~~~~~-------------------------------~v~-~~~~~~~~~~l~~~~~d-----~-----------~i~iw  151 (389)
                      +..-..                               .++ .+++.|..+.++.+..+     +           .|.-.
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            654211                               111 34666666677666521     2           67888


Q ss_pred             ECcCCceeeeeeecccC--------CeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCC
Q 016457          152 DWRNKKQVACLEESHVE--------DVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDIN  202 (389)
Q Consensus       152 d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~  202 (389)
                      |+++++....++..|.+        ...-+.+..+|+  ..++.+..+|.+++.|.++++.
T Consensus       277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            99999998777622211        111122223442  3788999999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=2.2e-05  Score=70.40  Aligned_cols=162  Identities=11%  Similarity=0.114  Sum_probs=106.7

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      +...|.--++...+  ++++.|+.-|.+.+|+-..++....-. +....+..+..++.+..+++++..|.|.++-+....
T Consensus        32 ~~~~v~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            33444444555555  799999999999999966554433222 234555666677666666667778999999887643


Q ss_pred             e-----eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457          158 Q-----VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       158 ~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      +     +......|+..|++++|++++. .+++|...|.|..-.+.+..........+....+.|..+.+. .  .+|++
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q--~~LLV  185 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q--SYLLV  185 (726)
T ss_pred             CCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-c--ceehH
Confidence            2     2222234778999999999996 999999999999988875211122344455567788888876 2  24555


Q ss_pred             EecCCcEEEEEcCCC
Q 016457          233 LTHIETLSIWDWKDG  247 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~  247 (389)
                      ++.-..+ +++++..
T Consensus       186 Stl~r~~-Lc~tE~e  199 (726)
T KOG3621|consen  186 STLTRCI-LCQTEAE  199 (726)
T ss_pred             hhhhhhh-eeecchh
Confidence            5444444 5666543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.26  E-value=0.00022  Score=49.13  Aligned_cols=100  Identities=12%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             eEEEeecC---CC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           41 VFEIVPKN---DW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        41 v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      |++|++..   || +.|++|+.|..|++|+-+  +.+..+. ..+.|++++-...+   .++.+..+|+|-+|+-  ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--cce
Confidence            56666543   43 689999999999999843  6667776 45678888877665   8999999999999975  455


Q ss_pred             EEEEEcCCCCeEEEEEeCCCC----eEEEeecCCeEE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTD----YLLAAGCGSQIQ  149 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~----~l~~~~~d~~i~  149 (389)
                      ++.++. +..++++++..-+.    .|+++-++|.|-
T Consensus        74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            566665 35577777653332    577777788774

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.26  E-value=0.0014  Score=56.64  Aligned_cols=213  Identities=12%  Similarity=0.162  Sum_probs=125.1

Q ss_pred             CeEEEEecC--ceeeeee--cCcceEEEee---cCC----CCeEEEEec---------C-CeEEEEeCCCc-----ee--
Q 016457           21 NSIKRFGLK--NSIQTNF--GDDYVFEIVP---KND----WSLMAVSLS---------T-NVVKLYSPVTG-----QY--   72 (389)
Q Consensus        21 ~~i~~w~~~--~~~~~~~--~~~~v~~~~~---~~~----~~~l~~~~~---------d-~~i~iw~~~~~-----~~--   72 (389)
                      ..|++.|..  +.+..+.  ....+.+++.   ..+    ..+|++|+.         . |.|.++++...     +.  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357788764  2333332  2666776653   332    468888865         2 88999999873     22  


Q ss_pred             eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      +... ...++|++++-. .+   .|+.+. .+.|.+|++...+ ....-.. ....+.++...  +++++++.....+.+
T Consensus        82 i~~~-~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEE-EESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEE-eecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence            2222 257889999877 44   444443 4789999998777 4433222 23467777764  668888888787777


Q ss_pred             EECcC-Cceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC---Cc-cc--eeeeccCCceeeE--
Q 016457          151 WDWRN-KKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND---DD-LL--ESVINVGTSVGKV--  220 (389)
Q Consensus       151 wd~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~--~~~~~~~~~i~~~--  220 (389)
                      +..+. ...+..+. ......++++.+-+++. .++.+..+|.+.++........   .. .+  ......+..|+++  
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~  232 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR  232 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence            75443 22232222 23456688999997774 9999999999999988732111   11 11  2223345667777  


Q ss_pred             -EEecC--CC-----cEEEEEecCCcEEEE
Q 016457          221 -GFFGE--TN-----KHLWCLTHIETLSIW  242 (389)
Q Consensus       221 -~~~~~--~~-----~~l~~~~~d~~i~i~  242 (389)
                       .+.|.  +.     ..++.++.+|.|...
T Consensus       233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             44331  11     247888888988744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.0029  Score=55.90  Aligned_cols=251  Identities=15%  Similarity=0.112  Sum_probs=160.1

Q ss_pred             CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ......+...+++..+.+... ...+...+............-...-..++.++.+. +.++....++.|.+.|..+.+.
T Consensus        30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~-~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN-KVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC-eEEEecCCCCeEEEEcCcccce
Confidence            345667788888865554443 22455555442222221111113345677887773 4666666678999999888887


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      ....... .....++++|+++.+.++..   ++.+.+.|..+++...... .-..+ ..+++.|++...+++-..++.|.
T Consensus       109 ~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         109 LGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             eeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence            7777654 36778999999989888776   6899999999998888855 22234 89999999963455555789999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      ++|..+....................+.+. +++..+.+....   +.+...|..++.....-....          .. 
T Consensus       186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~-~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~----------~~-  253 (381)
T COG3391         186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVD-PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG----------SG-  253 (381)
T ss_pred             EEeCCCcceeccccccccccCCCCceEEEC-CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc----------cC-
Confidence            999774321100000012233445677787 566655444443   588899988877666522211          11 


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ....+.++|+|...|++. +..+.+.+.|..+...
T Consensus       254 ~~~~v~~~p~g~~~yv~~-~~~~~V~vid~~~~~v  287 (381)
T COG3391         254 APRGVAVDPAGKAAYVAN-SQGGTVSVIDGATDRV  287 (381)
T ss_pred             CCCceeECCCCCEEEEEe-cCCCeEEEEeCCCCce
Confidence            456788999999544433 3457889988887654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.24  E-value=0.0017  Score=57.81  Aligned_cols=196  Identities=14%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             EEeecCCCCeEEEEecC----------C-eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           43 EIVPKNDWSLMAVSLST----------N-VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      .++.+|.|..+|...++          . .|.||+.. |+++.++.-..+.|.++.|+.+.   .|+....||.++++|+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDL  108 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeC
Confidence            34556666666666433          1 59999965 77777655444899999998754   6778889999999998


Q ss_pred             cCCeEEEEEE-------cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeee--c-----ccC-CeeE-EE
Q 016457          112 RSFHEVWSVT-------AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEE--S-----HVE-DVTQ-VH  174 (389)
Q Consensus       112 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~--~-----~~~-~v~~-~~  174 (389)
                      . |+....+.       .....+....+. .++.++. ..++.+.+..--... ....+..  .     +.. .... ..
T Consensus       109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  109 F-GEFQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             C-CceeechhhhccccCcccccccccccC-CCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence            6 33311111       111122222332 2333333 334554444322211 1111110  0     000 1111 23


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      ++.+.. ..+....++.+.+.+-...       .. ....+++..++.+ +++++++.-..+|.+.+.+..-.+.+..+.
T Consensus       186 l~~~~~-~~i~~~~g~~i~~i~~~~~-------~~-i~~~~~i~~iavS-png~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  186 LSSDRV-VEILLANGETIYIIDENSF-------KQ-IDSDGPIIKIAVS-PNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             eecCcc-eEEEEecCCEEEEEEcccc-------cc-ccCCCCeEEEEEC-CCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            444443 4445555566665544411       11 2234689999999 788899999999999888865555555554


Q ss_pred             c
Q 016457          255 N  255 (389)
Q Consensus       255 ~  255 (389)
                      .
T Consensus       256 ~  256 (410)
T PF04841_consen  256 T  256 (410)
T ss_pred             c
Confidence            3

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.23  E-value=0.0019  Score=56.60  Aligned_cols=245  Identities=13%  Similarity=0.083  Sum_probs=131.0

Q ss_pred             CCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cC-------C---------
Q 016457           19 NVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KG-------H---------   79 (389)
Q Consensus        19 ~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~-------~---------   79 (389)
                      ..+.+.++|+.+ ....+.. ...+....|+|+|+.+|... ++.|.+++..+++..+.- .+       -         
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            346778888875 3344433 56788999999999999887 788999998777444321 11       0         


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecC-CeEEEE-----------------------------------EccCCeEEE-EEE-
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSD-GTIRAW-----------------------------------DTRSFHEVW-SVT-  121 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iw-----------------------------------d~~~~~~~~-~~~-  121 (389)
                      -+.-.++-|+|++  ++|+....| ..|..+                                   |+.+++... ... 
T Consensus       100 ~~~~~~~~WSpd~--~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~  177 (353)
T PF00930_consen  100 FDRRSAVWWSPDS--KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN  177 (353)
T ss_dssp             SSSSBSEEE-TTS--SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred             cccccceEECCCC--CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence            1223568899999  566664432 333333                                   222222110 000 


Q ss_pred             ---cCCCCeEEEEEeCCCCeEEEeec--C---CeEEEEECcCCceeeeeeecccCC---eeEEEEe-cCCCCeEEEEeCC
Q 016457          122 ---AGSQEIFCFSFGGSTDYLLAAGC--G---SQIQFWDWRNKKQVACLEESHVED---VTQVHFV-PNNQNKVVSASVD  189 (389)
Q Consensus       122 ---~~~~~v~~~~~~~~~~~l~~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~l~~~~~d  189 (389)
                         .....+..+.|.+++..+++.-.  +   -.+.+.|..++.....+.......   -....+. +++..++.....+
T Consensus       178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence               11344667888877764555433  1   256667777665543333222222   2355665 6665466666677


Q ss_pred             CcEEEE--ecCCCCCCCccceeeeccCCceee-EEEecCCCcEEEEEecCC----cEEEEEcCCCceeEEeecccccccC
Q 016457          190 GLICTF--DTGGDINDDDLLESVINVGTSVGK-VGFFGETNKHLWCLTHIE----TLSIWDWKDGQNVASFENARSLASD  262 (389)
Q Consensus       190 ~~i~i~--d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~  262 (389)
                      |.-++|  +..++     ....+....-.|.. +.+.+.++.+.+++..++    .|..-++..+..+..+....     
T Consensus       258 G~~hly~~~~~~~-----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-----  327 (353)
T PF00930_consen  258 GYRHLYLYDLDGG-----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-----  327 (353)
T ss_dssp             SSEEEEEEETTSS-----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-----
T ss_pred             CCcEEEEEccccc-----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-----
Confidence            765554  44432     23344445556655 556644455556666533    55555555233444444321     


Q ss_pred             CccCCCCCceeeecccCCCCe
Q 016457          263 SWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~  283 (389)
                             .....+.|||+++.
T Consensus       328 -------~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  328 -------GDHYSASFSPDGKY  341 (353)
T ss_dssp             -------STTEEEEE-TTSSE
T ss_pred             -------CCceEEEECCCCCE
Confidence                   11158999999983

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.21  E-value=0.00028  Score=66.42  Aligned_cols=135  Identities=17%  Similarity=0.176  Sum_probs=95.7

Q ss_pred             cCCeEEEEeCCCceeeeeecCCCCc-EEEEEEeCCCC-----CCEEEEEecCCeEEEEEccCCe--EEEE-EE--cCCCC
Q 016457           58 STNVVKLYSPVTGQYSGECKGHSST-VNQISFSGPST-----PHVLHSCSSDGTIRAWDTRSFH--EVWS-VT--AGSQE  126 (389)
Q Consensus        58 ~d~~i~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~--~~~~~  126 (389)
                      ....|+-.|++.|+.+..+..|... |..++  |+..     +...+.|-.++.+..||.+-..  .+.. .+  .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4578999999999999999887654 55443  4320     1356667778889999998532  2211 11  12567


Q ss_pred             eEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .+|++-. .++++++|+.+|.|++|| +.+....+.-.+-+.+|..|..+.+|+ ++++.+ +..+.+++..
T Consensus       580 Fs~~aTt-~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGk-wilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  580 FSCFATT-EDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGK-WILATC-KTYLLLIDTL  647 (794)
T ss_pred             ceEEEec-CCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCc-EEEEee-cceEEEEEEe
Confidence            8888877 778999999999999999 444444443337789999999999997 555544 5677787763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.0029  Score=56.48  Aligned_cols=223  Identities=11%  Similarity=0.100  Sum_probs=110.1

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      ..-....+.++|++  ++++. +.||.-.|+.....+....     +.-...+|.+ .+.+++-...+.|.++.--+.+.
T Consensus        31 ~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             -SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T
T ss_pred             CCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCcccc
Confidence            34457889999999  56666 6688888888544444322     3345678885 56677766688999973223333


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      ...+.  ....+..|-.   |. +|...+ ++.|.+||+.++    ..+.++...  +|..+.|+ +++++++..+.+ .
T Consensus       102 ~k~i~--~~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws-~~g~~val~t~~-~  166 (443)
T PF04053_consen  102 VKSIK--LPFSVEKIFG---GN-LLGVKS-SDFICFYDWETG----KLIRRIDVS--AVKYVIWS-DDGELVALVTKD-S  166 (443)
T ss_dssp             T-------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT------EEEEESS---E-EEEEE--TTSSEEEEE-S--S
T ss_pred             ceEEc--CCcccceEEc---Cc-EEEEEC-CCCEEEEEhhHc----ceeeEEecC--CCcEEEEE-CCCCEEEEEeCC-e
Confidence            33444  1223444433   64 666665 448999999954    344444322  48999999 778888888765 6


Q ss_pred             EEEEEcCCC-----------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc
Q 016457          239 LSIWDWKDG-----------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT  307 (389)
Q Consensus       239 i~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~  307 (389)
                      +.+++....           ..+..+..            -...|.+.+|..+   .++.+...  .|+.  +..|+   
T Consensus       167 i~il~~~~~~~~~~~~~g~e~~f~~~~E------------~~~~IkSg~W~~d---~fiYtT~~--~lkY--l~~Ge---  224 (443)
T PF04053_consen  167 IYILKYNLEAVAAIPEEGVEDAFELIHE------------ISERIKSGCWVED---CFIYTTSN--HLKY--LVNGE---  224 (443)
T ss_dssp             EEEEEE-HHHHHHBTTTB-GGGEEEEEE------------E-S--SEEEEETT---EEEEE-TT--EEEE--EETTE---
T ss_pred             EEEEEecchhcccccccCchhceEEEEE------------ecceeEEEEEEcC---EEEEEcCC--eEEE--EEcCC---
Confidence            667765422           02222221            1256777777765   24444433  4554  33332   


Q ss_pred             cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                                  .+.|..+-  .+..-+.+.++...++....|+.|..+.++..
T Consensus       225 ------------~~~i~~ld--~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  225 ------------TGIIAHLD--KPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             ------------EEEEEE-S--S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             ------------cceEEEcC--CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence                        22222221  01111155565566788889999999988855

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.20  E-value=0.0027  Score=53.57  Aligned_cols=224  Identities=15%  Similarity=0.216  Sum_probs=127.5

Q ss_pred             CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE-------
Q 016457           48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV-------  120 (389)
Q Consensus        48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------  120 (389)
                      ..++.|+.|+.+| +.+++........... +...|..+...++-  +.|++-+ |+.+.++++.........       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            4567899999888 9999983332222222 23349999999877  4555554 599999998754433311       


Q ss_pred             ------E-cCCCCeEEEE--EeCCCCeEEEeecCCeEEEEECcCC-----ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          121 ------T-AGSQEIFCFS--FGGSTDYLLAAGCGSQIQFWDWRNK-----KQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       121 ------~-~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                            . .....+...+  -.+.+...++......|.+|.....     +....+.  -...+.+++|.+   +.++.|
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---~~i~v~  154 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---NKICVG  154 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC---CEEEEE
Confidence                  1 1123444444  2234556666666679999887653     3455554  567899999994   367777


Q ss_pred             eCCCcEEEEecCCCCCCCccceeee----------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVI----------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  256 (389)
                      ..+ ...+.|+.++..  ..+....          ....++..+..  +++.+|++.  +. +-+|=-..|+..+..   
T Consensus       155 ~~~-~f~~idl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~-~g~fv~~~G~~~r~~---  223 (275)
T PF00780_consen  155 TSK-GFYLIDLNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DN-IGVFVNKNGEPSRKS---  223 (275)
T ss_pred             eCC-ceEEEecCCCCc--eEEeCccCCcchhhhcccCCCceEEEEe--CCceEEEEe--cc-eEEEEcCCCCcCccc---
Confidence            644 478889985431  1111110          01123333333  334555543  22 333333345433310   


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                          ...|.    .....+++..  .  ||++-..+ .|.||++.++++
T Consensus       224 ----~i~W~----~~p~~~~~~~--p--yli~~~~~-~iEV~~~~~~~l  259 (275)
T PF00780_consen  224 ----TIQWS----SAPQSVAYSS--P--YLIAFSSN-SIEVRSLETGEL  259 (275)
T ss_pred             ----EEEcC----CchhEEEEEC--C--EEEEECCC-EEEEEECcCCcE
Confidence                01121    3445555543  3  77776554 499999999876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.00044  Score=61.36  Aligned_cols=174  Identities=14%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---C-CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---G-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      +.+-|.. +.....+......+..-+|+|++..++....   . ..+.++|+.+++....+.  ....-..-+|+|+|+.
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~  251 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCE
Confidence            3343433 4445555555667777889988887666543   2 469999999887665554  3444556789999986


Q ss_pred             eEEEEeCCCc--EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE-EEecCC--cEEEEEcCCCceeEEeecc
Q 016457          182 KVVSASVDGL--ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW-CLTHIE--TLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       182 ~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~  256 (389)
                      ++++...||.  |+++|+.++.     ...+......-..=.|+ ++|+.++ +.+..|  .|.+++...... ..+...
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~-----~~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN-----LPRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc-----ceecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence            7777777776  6666776542     22222222222355677 5666555 444455  566666665544 222221


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCce--EEEEEecc
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT--VGYFPVNY  302 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~--i~i~~~~~  302 (389)
                                  ...-..-.|+|+|+.+.+ ....+|.  |.+.++.+
T Consensus       325 ------------~~~~~~p~~SpdG~~i~~-~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         325 ------------GGGNSNPVWSPDGDKIVF-ESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             ------------CCCCcCccCCCCCCEEEE-EeccCCceeeEEeccCC
Confidence                        122226789999995433 3333454  44444443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00082  Score=59.68  Aligned_cols=199  Identities=13%  Similarity=0.067  Sum_probs=116.9

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe---cC-CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS---SD-GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST  136 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  136 (389)
                      .+.+-|.+ |.....+......+..-+|+|++.  .++...   .. ..+.++++.+++....+.. ...-..-+|+|++
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~--~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fspDG  249 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGK--KLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFSPDG  249 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCC--ceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCCCCC
Confidence            34444433 444445544556677788999984  433321   22 3589999998876555553 3445567899999


Q ss_pred             CeEEEeec-CC--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc--EEEEecCCCCCCCccceeee
Q 016457          137 DYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL--ICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       137 ~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~  211 (389)
                      ..++.+.. ||  .|.+.|+..+.. ..+. ...+.-+.-.|+|+|+.++++.+..|.  |.++|..+..     ...+.
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----~~riT  322 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----VTRLT  322 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----eeEee
Confidence            99888776 55  577778877663 3354 222333367899999856666666666  5555555332     22222


Q ss_pred             ccCCceeeEEEecCCCcEEEEEec-CCc--EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTH-IET--LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                      .....-..-.|+ +++++++..+. +|.  |.+.|+.++...+.+..             ......-.|.+++..+
T Consensus       323 ~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-------------~~~~e~ps~~~ng~~i  384 (425)
T COG0823         323 FSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-------------TYLNESPSWAPNGRMI  384 (425)
T ss_pred             ccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-------------cccCCCCCcCCCCceE
Confidence            222222255677 67777766654 344  66677666554444332             2333455677887743

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.19  E-value=0.003  Score=56.23  Aligned_cols=174  Identities=13%  Similarity=0.097  Sum_probs=90.3

Q ss_pred             eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCC-----eeEEEEecC
Q 016457          105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVED-----VTQVHFVPN  178 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-----v~~~~~~~~  178 (389)
                      .|+||+. .|+.+.++.-..+.|.++.|+ .+..|++...||.+++||+. |+....+. ......     +....+...
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt-~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWT-DDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEEC-CCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            4888885 467777766656899999999 57788888899999999986 33311111 001111     222233334


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC------Cceee-EEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          179 NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG------TSVGK-VGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~~i~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      |   ++.-..++.+.+..-.................      ..... ..+. .+....+....++.+.+.+....+.  
T Consensus       139 G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  139 G---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFKQ--  212 (410)
T ss_pred             C---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee-cCcceEEEEecCCEEEEEEcccccc--
Confidence            4   23333455555443321100000000110000      01111 1222 2233333334444454333221111  


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                       +.             ..+++..+++||+++  +||.-..+|.+.+.+.+-.
T Consensus       213 -i~-------------~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 -ID-------------SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             -cc-------------CCCCeEEEEECCCCC--EEEEEECCCCEEEEECccc
Confidence             11             226799999999999  7788888899988875543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.10  E-value=0.0081  Score=55.43  Aligned_cols=193  Identities=13%  Similarity=0.047  Sum_probs=114.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEE----------EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVN----------QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~----------~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      +..|++++.++.|.-+|..+|+.+..+.... ..+.          .+++. +   ..++.++.|+.|.-.|..+|+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~---~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-D---GKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-C---CEEEEEcCCCEEEEEECCCCCEEe
Confidence            4477777778899999999999888765311 1111          12222 2   367778889999999999999998


Q ss_pred             EEEcCC----CCeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccC-------------------
Q 016457          119 SVTAGS----QEIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVE-------------------  168 (389)
Q Consensus       119 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~-------------------  168 (389)
                      ......    ..+++ -..  .++.++++..      +|.|..+|.++++.+.++......                   
T Consensus       145 ~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             ecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            765421    11211 112  2446666543      689999999999987665411110                   


Q ss_pred             -----------Ce-eEEEEecCCCCeEEEEeCC-----C-----------cEEEEecCCCCCCCccceeeeccCC-----
Q 016457          169 -----------DV-TQVHFVPNNQNKVVSASVD-----G-----------LICTFDTGGDINDDDLLESVINVGT-----  215 (389)
Q Consensus       169 -----------~v-~~~~~~~~~~~~l~~~~~d-----~-----------~i~i~d~~~~~~~~~~~~~~~~~~~-----  215 (389)
                                 .+ ..+++.|+.. ++..+..+     +           .|.-.|+++++..  -..+...|..     
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~--W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK--WHYQTTPHDEWDYDG  299 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE--EeeeCCCCCCccccC
Confidence                       01 1346666653 66665522     1           4555666665311  1111111211     


Q ss_pred             ceeeEEEe-cCCCc---EEEEEecCCcEEEEEcCCCceeE
Q 016457          216 SVGKVGFF-GETNK---HLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       216 ~i~~~~~~-~~~~~---~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      .-..+.+. +.+++   .++.+..+|.+++.|..+++.+.
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            01111111 13443   78899999999999999998863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.02  E-value=0.0009  Score=46.16  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=73.2

Q ss_pred             EEEEEEeC---CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457           83 VNQISFSG---PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV  159 (389)
Q Consensus        83 v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  159 (389)
                      |+++++..   ++. +.|+.|+.|..||+|+-  .+.+..+... +.|++++-. ....++.+-.+|+|-+|+-  ...+
T Consensus         2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~-~~~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSL-GGGRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEc-CCCEEEEEecCCEEEEEeC--ccee
Confidence            56666654   443 68999999999999984  4677777764 788888877 4578888888999999984  4445


Q ss_pred             eeeeecccCCeeEEEEec---CCCCeEEEEeCCCcEE
Q 016457          160 ACLEESHVEDVTQVHFVP---NNQNKVVSASVDGLIC  193 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~  193 (389)
                      ..++  .+..++++.+..   +|...|++|-.+|.|-
T Consensus        75 WRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5555  334466666543   3333799998888874

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=3.7e-05  Score=68.18  Aligned_cols=93  Identities=15%  Similarity=-0.004  Sum_probs=79.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE-EEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN-QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      .-.|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|  +.|+.|-.||+|++.|+.++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC--CEEEEEecCCeEEEEEccCCCc
Confidence            5567889999999999999999999999987 777888887777787 99999999  8999999999999999999888


Q ss_pred             EEEEEc-CCCCeEEEEEe
Q 016457          117 VWSVTA-GSQEIFCFSFG  133 (389)
Q Consensus       117 ~~~~~~-~~~~v~~~~~~  133 (389)
                      +..+.. ....|.++.|.
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            776322 25678888885

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.9e-05  Score=67.45  Aligned_cols=95  Identities=8%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeE-EEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      ...|.-+.|+|.-  +++|++..+|.|.+..+. .+.+.++..+...++ +++|.|+|+.++++-.||+|++.|+.++..
T Consensus        20 ~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            3567889999998  799999999999999988 888899997777777 999999998888888899999999999988


Q ss_pred             eeeeeecccCCeeEEEEec
Q 016457          159 VACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~  177 (389)
                      +......-...|.++-|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            8773323556788888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.01  Score=52.47  Aligned_cols=266  Identities=11%  Similarity=0.076  Sum_probs=156.5

Q ss_pred             EEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE
Q 016457           62 VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA  141 (389)
Q Consensus        62 i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  141 (389)
                      +.+++..+.+....+..+. ....+...+.+. +..++-.....+...+................-..++.++.+..+++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~-~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGT-QVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccC-EEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence            5566655554444444332 455677777774 23333333335555555422222212221234557788888887777


Q ss_pred             eec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe--CCCcEEEEecCCCCCCCccceeeeccCCcee
Q 016457          142 AGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLLESVINVGTSVG  218 (389)
Q Consensus       142 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~  218 (389)
                      ... ++.|.+.|..+.+.......+  .....++++|+++...++-.  .++.+.+.|..+.    ........-..+ .
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~  163 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-T  163 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-c
Confidence            665 699999998888887777633  36788999999974444444  3688888888854    233332222234 8


Q ss_pred             eEEEecCCCcEE-EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC-CceEE
Q 016457          219 KVGFFGETNKHL-WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG-AGTVG  296 (389)
Q Consensus       219 ~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~-dg~i~  296 (389)
                      .+++. +++..+ ++-..++.|.++|........ -......       .-......+.++++|+++|++-... ++.+.
T Consensus       164 ~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~-------~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         164 GVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV-------GVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             eEEEC-CCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc-------ccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            89998 566644 444578899999976655543 1100000       0224456788999999766554433 37888


Q ss_pred             EEEeccCCccccCCCeEE-EecccceeeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccCC
Q 016457          297 YFPVNYGGAATIGPPEAV-LVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDDS  361 (389)
Q Consensus       297 i~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~~  361 (389)
                      ..|..++..      ... ...+-. ....+         .++|+|+++.+.. ..+.|.+-+....
T Consensus       235 ~id~~~~~v------~~~~~~~~~~-~~~~v---------~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         235 KIDTATGNV------TATDLPVGSG-APRGV---------AVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEeCCCceE------EEeccccccC-CCCce---------eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            888887654      111 110110 12233         7788888877773 3366766666543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0083  Score=50.82  Aligned_cols=225  Identities=10%  Similarity=0.046  Sum_probs=129.9

Q ss_pred             eecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457           45 VPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG  123 (389)
Q Consensus        45 ~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  123 (389)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+  ..|+++. .| +.+++.+++..+..+...
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~--g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAG--GRLIACE-HG-VRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCC--CeEEEEc-cc-cEEEeccCCceeEEeccc
Confidence            4777776 4445555788999998766432 222 22334444444343  3555553 33 677777655553333221


Q ss_pred             -----CCCeEEEEEeCCCCeEEEeec-----------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          124 -----SQEIFCFSFGGSTDYLLAAGC-----------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       124 -----~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                           ....+.+...|++...+....           -|.|+.+|. .+..+..+. .+-..-+.|+|+|+++.++++=+
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEEEeC
Confidence                 245567778877666555433           133444443 455555544 44556688999999974555556


Q ss_pred             CCCcEEEEecCC--CCCCCcc-ceeeeccCCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCC
Q 016457          188 VDGLICTFDTGG--DINDDDL-LESVINVGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       188 ~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ..+.|.-|++..  +...... ........+..-.++.. .++.+.+++..+| .|.+|+.. ++.+..+....      
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~------  254 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV------  254 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCC-CcEEEEEECCC------
Confidence            668899888862  1111111 11121234556677776 5666554444444 99999988 88888887632      


Q ss_pred             ccCCCCCceeeecccC-CCCeEEEEEecC
Q 016457          264 WTLDDVDYFVDCHYPG-EGENLWVIGGTG  291 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~~~~l~~g~~  291 (389)
                            ..+.+++|-- +.+.+|+.+...
T Consensus       255 ------~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         255 ------KRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ------CCCccceEeCCCcCEEEEEecCC
Confidence                  5567777754 455555544444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=1.4e-05  Score=61.98  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=65.9

Q ss_pred             CeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457          137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS  216 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  216 (389)
                      ..+.+.+.+|.|.-++++..+.-..-...+.    +..--+.....+++|+.+|.|++|...-.   .............
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~---g~~~d~~~s~~e~  103 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLE---GAHSDRVCSGEES  103 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCcc---chHHHhhhccccc
Confidence            3466677789998888875433211110122    22111222247999999999999998821   1112222222233


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      |..+.-...++.+.++++.+|.|+.|++.-.+.+.....
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence            333333325566899999999999999987776655443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.92  E-value=1.4e-05  Score=61.98  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=83.9

Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE-Eeecccccc
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA-SFENARSLA  260 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~  260 (389)
                      .+...+.+|.|.-++++..+   ...+...-+... ..+   +.-+..+++|+.+|.|++|+........ .+...    
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k---~s~rse~~~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~----  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHK---ESCRSERFIDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG----  100 (238)
T ss_pred             hhccccCCcccccchhhhhh---hhhhhhhhhhcc-eee---cccCceEEeecccceEEEecCCccchHHHhhhcc----
Confidence            45556678999988888321   111111111111 111   1334579999999999999876221111 11110    


Q ss_pred             cCCccCCCCCcee-eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCC
Q 016457          261 SDSWTLDDVDYFV-DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQ  338 (389)
Q Consensus       261 ~~~~~~~~~~~i~-~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s  338 (389)
                             . ..+. .+.--.++.  +..++..||.|+.|++...+.      +. ....|. .++...         ..+
T Consensus       101 -------~-e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~------~g-~~g~h~~~~~e~~---------ivv  154 (238)
T KOG2444|consen  101 -------E-ESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKV------LG-YVGQHNFESGEEL---------IVV  154 (238)
T ss_pred             -------c-ccceeccccccccc--eeEEeccCCceeeeccccCce------ee-eeccccCCCccee---------EEe
Confidence                   0 1121 122222333  678999999999999987765      23 323555 444444         455


Q ss_pred             CCceeEEEe--cCCCeEEEEeccCCcc
Q 016457          339 SHGIFGWTG--GEDGRLCCWLSDDSSE  363 (389)
Q Consensus       339 ~~~~~l~s~--~~dg~v~iW~~~~~~~  363 (389)
                      ..+++|+.+  |.|..++.|+++.-.+
T Consensus       155 ~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  155 GSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             cCCceEEeeccccchhhhhcchhhhhc
Confidence            666677777  8888889998886533

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.00031  Score=61.30  Aligned_cols=142  Identities=12%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC-----EEEEEecCCeEEEEEccC-Ce-EEEEEEcC-
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH-----VLHSCSSDGTIRAWDTRS-FH-EVWSVTAG-  123 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~l~s~~~dg~i~iwd~~~-~~-~~~~~~~~-  123 (389)
                      +|..+.....++-.|++.|+.+..+.-|.. |+-+.+.|+....     .-+.|-.|..|.-||.+- +. .+...++| 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344555566788889999999999987766 7778888876322     234456788899999873 22 23333333 


Q ss_pred             ---CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          124 ---SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       124 ---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                         .....|.+-. .++++++++.+|.|++||- .+....+..++...+|..|..+.+|+ +|++.+ +..+.+.++.
T Consensus       427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEEEEEe
Confidence               4556677666 6789999999999999996 55555544448889999999999997 555444 6778887776

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.83  E-value=0.011  Score=48.08  Aligned_cols=204  Identities=10%  Similarity=0.059  Sum_probs=120.2

Q ss_pred             eeeeeecCCC--CcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeEEEEEEcCC-CCeEEEEEeCCCCeEEEeecC
Q 016457           71 QYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHEVWSVTAGS-QEIFCFSFGGSTDYLLAAGCG  145 (389)
Q Consensus        71 ~~~~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  145 (389)
                      +.+.++. |.  .-...+.|..++  .++-+.+.-|  .|+.+|+.+++......... ---..++.. ++.....+=.+
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g--~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~  109 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDG--TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETT--EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSS
T ss_pred             EEEEECC-CCCcccCccEEecCCC--EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecC
Confidence            3455554 33  335567786677  5777877766  69999999999887766542 223345554 33333334448


Q ss_pred             CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCC---ceeeE
Q 016457          146 SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGT---SVGKV  220 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~---~i~~~  220 (389)
                      +...+||..+.+.+.++.  ....=..++  .++. .|+.......++++|..+..    ....+.  ....   .++-+
T Consensus       110 ~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~----~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFK----EVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE---SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-S----EEEEEE-EETTEE---EEEE
T ss_pred             CeEEEEccccceEEEEEe--cCCcceEEE--cCCC-EEEEECCccceEEECCcccc----eEEEEEEEECCEECCCcEeE
Confidence            999999999999998887  344556666  3454 55555556789999987432    222222  2222   35567


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC---ccCCCCCceeeecccCCCCeEEEEEec
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS---WTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                      .+.  +|...+-.-....|...|..+|++...+.-..-.....   -.....+-.+.+++.|..++ +++||-
T Consensus       181 E~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTGK  250 (264)
T PF05096_consen  181 EYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTGK  250 (264)
T ss_dssp             EEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEET
T ss_pred             EEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEeC
Confidence            775  56666666667789999999999988775321111000   00012456789999998876 467773

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.80  E-value=7.5e-05  Score=40.99  Aligned_cols=39  Identities=41%  Similarity=0.711  Sum_probs=33.8

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      +++...+..|...|.++.|.+.+  ..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG--KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC--CEEEEecCCCeEEEcC
Confidence            35566777889999999999988  6999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0013  Score=62.14  Aligned_cols=142  Identities=10%  Similarity=0.010  Sum_probs=99.6

Q ss_pred             CEEEEE-ecCCeEEEEEccCCeEEEEEEcCCCC-eEEEEEeC-----CCCeEEEeecCCeEEEEECcCCc--eeee-ee-
Q 016457           95 HVLHSC-SSDGTIRAWDTRSFHEVWSVTAGSQE-IFCFSFGG-----STDYLLAAGCGSQIQFWDWRNKK--QVAC-LE-  163 (389)
Q Consensus        95 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--~~~~-~~-  163 (389)
                      .+|+.- .....|.-.|+..|+.+..++.+... |..++-..     .....++|-+++.+..||.|-..  .+.. .. 
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344443 45577999999999999999988543 55554321     23456778888999999999542  2211 10 


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD  243 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d  243 (389)
                      -......+|++-..+|  .||+|+.+|.|++||-- +.   .....+.+.+.+|..|..+ .+|+++++.+. ..|.+++
T Consensus       574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~---~AKT~lp~lG~pI~~iDvt-~DGkwilaTc~-tyLlLi~  645 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK---RAKTALPGLGDPIIGIDVT-ADGKWILATCK-TYLLLID  645 (794)
T ss_pred             cccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch---hhhhcCCCCCCCeeEEEec-CCCcEEEEeec-ceEEEEE
Confidence            0244568899998887  79999999999999954 22   2233344668999999999 88887776654 5666777


Q ss_pred             c
Q 016457          244 W  244 (389)
Q Consensus       244 ~  244 (389)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.011  Score=48.28  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=113.3

Q ss_pred             ec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           36 FG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        36 ~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      .+ ...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- --...-.|++..++  ++.++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEEehhcceEEEEEEcC
Confidence            44 56699999999999888888777777776677888877642 12234567787777  6777777888898888765


Q ss_pred             CeEEEE-----EE-----cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-e--eeee------ecccCCeeEEE
Q 016457          114 FHEVWS-----VT-----AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-V--ACLE------ESHVEDVTQVH  174 (389)
Q Consensus       114 ~~~~~~-----~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~~------~~~~~~v~~~~  174 (389)
                      ...+..     +.     ..+.....++|.|.+..++++=.-.-+.||....... +  ....      .-.-..|+++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            422211     11     1156788999999999999998877777776653321 1  0000      01124578889


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                      |++...++++-+.+++.+...|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            99877678888888898988888843

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.022  Score=48.31  Aligned_cols=203  Identities=12%  Similarity=0.023  Sum_probs=117.8

Q ss_pred             CeEEEEecC-ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec----C-CCCcEEEEEEeCCCCC
Q 016457           21 NSIKRFGLK-NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK----G-HSSTVNQISFSGPSTP   94 (389)
Q Consensus        21 ~~i~~w~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~   94 (389)
                      +.|..|+.. .....+...+.+.++..-..+..|+++.  .-+.+++.+++..+..+.    + .....+.+...|++  
T Consensus        47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG--  122 (307)
T COG3386          47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG--  122 (307)
T ss_pred             CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC--
Confidence            344445443 2333343345555555444444555543  346777776665433221    1 22456788888888  


Q ss_pred             CEEEEEecC----------CeEEEEEcc-CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcC--Cc---
Q 016457           95 HVLHSCSSD----------GTIRAWDTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRN--KK---  157 (389)
Q Consensus        95 ~~l~s~~~d----------g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~~---  157 (389)
                       .+..+...          ..-.+|-+. .+..+..+..+-..-+.|+|+|+++.++.+-+ .+.|.-|++..  +.   
T Consensus       123 -~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~  201 (307)
T COG3386         123 -RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG  201 (307)
T ss_pred             -CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence             34443333          111455554 56666666655566678999999999888877 58888887752  11   


Q ss_pred             e--eeeeeecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          158 Q--VACLEESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       158 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      .  ...+. ...+..-.++...+|. +.+++..+| .|..|+.. +    +.+..+.-....+.+++|-.++.+.|++.+
T Consensus       202 ~~~~~~~~-~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         202 RRGFVDFD-EEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cceEEEcc-CCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            1  11111 2345556678888884 654554444 89999988 3    234444444477888888766555555444


Q ss_pred             c
Q 016457          235 H  235 (389)
Q Consensus       235 ~  235 (389)
                      .
T Consensus       275 ~  275 (307)
T COG3386         275 A  275 (307)
T ss_pred             c
Confidence            4

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.67  E-value=0.032  Score=48.67  Aligned_cols=237  Identities=11%  Similarity=0.132  Sum_probs=105.3

Q ss_pred             CCCeEEEEe-cCCeEEEEeCCCc----eeeeeecC---CC----CcEEEEEEeCCCCCCEEEEEe--c----CCeEEEEE
Q 016457           49 DWSLMAVSL-STNVVKLYSPVTG----QYSGECKG---HS----STVNQISFSGPSTPHVLHSCS--S----DGTIRAWD  110 (389)
Q Consensus        49 ~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~---~~----~~v~~i~~~~~~~~~~l~s~~--~----dg~i~iwd  110 (389)
                      +.++|+..+ ..+.|+|.|+.+.    ++.+.+..   +.    ..-..+...|++  +.++|+-  .    -|-+.+.|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G--~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG--RIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc--cEEEEeccCCCCCCCCcEEEEc
Confidence            345666665 6789999998742    34444432   11    223344455677  6888743  2    24578888


Q ss_pred             ccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEeec--------------------CCeEEEEECcCCceeeeeeeccc
Q 016457          111 TRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAGC--------------------GSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus       111 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      -++.+........   ..--..+-|.|..+.++++..                    ...+.+||+.+.+.++++..+..
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            8887777777653   233456778888888887642                    25899999999999999884333


Q ss_pred             C-CeeEEEEecC--CCCeEEEEeCCCcEEEEec-CCCCCCCccceee-----------------eccCCceeeEEEecCC
Q 016457          168 E-DVTQVHFVPN--NQNKVVSASVDGLICTFDT-GGDINDDDLLESV-----------------INVGTSVGKVGFFGET  226 (389)
Q Consensus       168 ~-~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~  226 (389)
                      . ....|.|..+  ...-++.+.-...|..|-- ..+.-..+.+..+                 .....-|+.+..+ .+
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lD  322 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LD  322 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TT
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cC
Confidence            2 4556777543  3322444444445554443 2111001111111                 1113457888998 55


Q ss_pred             CcEEEEEe-cCCcEEEEEcCCCce---eEEeecccccccCCc----cCCCCCceeeecccCCCCeEEEEE
Q 016457          227 NKHLWCLT-HIETLSIWDWKDGQN---VASFENARSLASDSW----TLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       227 ~~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      .++|+.++ ..|.|+.||+.+...   ..++.-...+.....    ...-.+...-+..|.||+++|+.+
T Consensus       323 DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            56665554 589999999987533   322221111100000    000112335567888899877544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.64  E-value=0.023  Score=46.17  Aligned_cols=221  Identities=10%  Similarity=0.025  Sum_probs=126.9

Q ss_pred             ceeeeeecCcceEEEeecCCC-CeEEEEecCC-eEEEEeCCCceeeeeecCCCCc--EEEEEEeCCCCCCEEEEEec---
Q 016457           30 NSIQTNFGDDYVFEIVPKNDW-SLMAVSLSTN-VVKLYSPVTGQYSGECKGHSST--VNQISFSGPSTPHVLHSCSS---  102 (389)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~l~s~~~---  102 (389)
                      +.+....-...-..|+|+|.- .-++.+-.-| ...++|.+..+....+...++.  ---=.|+|++  .+|...-.   
T Consensus        59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~LYATEndfd  136 (366)
T COG3490          59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLLYATENDFD  136 (366)
T ss_pred             ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEEEeecCCCC
Confidence            333333335666788899865 4455555544 4678898877665554322111  1123689999  56665433   


Q ss_pred             --CCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeec------------------CCeEEEEECcCCceeee
Q 016457          103 --DGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGC------------------GSQIQFWDWRNKKQVAC  161 (389)
Q Consensus       103 --dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~  161 (389)
                        -|.|-|||.+.+ +.+..+..|.-....+.+.+++..++.+..                  .-++.+.|..+++.+.+
T Consensus       137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence              367999998853 456677777777778889988888877653                  12455556566665544


Q ss_pred             eee---cccCCeeEEEEecCCCCeEEEEeCCCcE----EEEecCCCCCCCc----cceeeeccCCceeeEEEecCCCcEE
Q 016457          162 LEE---SHVEDVTQVHFVPNNQNKVVSASVDGLI----CTFDTGGDINDDD----LLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       162 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i----~i~d~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      ...   .+...|..++..++|. .++.+-..|.-    -+.-...+....+    +..+.......|-+++.+..++...
T Consensus       217 h~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         217 HTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             ccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence            331   2445688888888874 44333222210    0000000000000    0111112234677888875555555


Q ss_pred             EEEecCCcEEEEEcCCCceeEEe
Q 016457          231 WCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      +++-..+...+||..++..+..-
T Consensus       296 lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         296 LTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             EecCCCCeEEEEEcCCCcEEecc
Confidence            55556668889999999877554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.63  E-value=0.03  Score=47.23  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=92.7

Q ss_pred             CEEEEEecCCeEEEEEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee-----------
Q 016457           95 HVLHSCSSDGTIRAWDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL-----------  162 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------  162 (389)
                      +.|+.|+.+| +.++++.. ........  ...|..+...|.-+.+++-+ |+.+.++++.........           
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            6899999998 89999833 33333333  24499999987777766665 499999999865443311           


Q ss_pred             --eecccCCeeEEE--EecCCCCeEEEEeCCCcEEEEecCCCCCCC-ccceeeeccCCceeeEEEecCCCcEEEEEecCC
Q 016457          163 --EESHVEDVTQVH--FVPNNQNKVVSASVDGLICTFDTGGDINDD-DLLESVINVGTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       163 --~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                        .......+...+  -...+. ..++......|.+|......... ....+ ......+..++|. .  +.++.+..+ 
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~~-~--~~i~v~~~~-  157 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAFL-G--NKICVGTSK-  157 (275)
T ss_pred             cccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEE-EEcCCCcEEEEEe-C--CEEEEEeCC-
Confidence              101223344444  123333 44445556699999988542222 23333 4456888999998 3  367777654 


Q ss_pred             cEEEEEcCCCceeEEe
Q 016457          238 TLSIWDWKDGQNVASF  253 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~  253 (389)
                      ...+.|+.++.....+
T Consensus       158 ~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELL  173 (275)
T ss_pred             ceEEEecCCCCceEEe
Confidence            4778999877654443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=0.00029  Score=38.47  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457          114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD  152 (389)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  152 (389)
                      +++...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778888999999998888899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0054  Score=53.97  Aligned_cols=141  Identities=13%  Similarity=0.049  Sum_probs=97.9

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC-------eEEEeecCCeEEEEECcCCce-eeeeeec--
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD-------YLLAAGCGSQIQFWDWRNKKQ-VACLEES--  165 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~~~~~--  165 (389)
                      +|.++.....++-.|++.|+.+..++.+.. |+-+.+.|+..       .-++|-++..|.-||.|-... +.....+  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455566666788889999999999998755 77777776542       345566689999999984322 1111112  


Q ss_pred             --ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457          166 --HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD  243 (389)
Q Consensus       166 --~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d  243 (389)
                        ......|.+-..+|  .+++|+.+|.|++||-- +.   .....+.+.+.+|..|..+ .+|+++++.+ +..+.+-+
T Consensus       427 y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri-~~---~AKTAlPgLG~~I~hVdvt-adGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRI-GR---RAKTALPGLGDAIKHVDVT-ADGKWILATC-KTYLLLID  498 (644)
T ss_pred             cccccccceeeecCCc--eEEEeecCCcEEeehhh-hh---hhhhcccccCCceeeEEee-ccCcEEEEec-ccEEEEEE
Confidence              23456778877777  79999999999999984 22   2233456678899999998 7787766544 45666666


Q ss_pred             cC
Q 016457          244 WK  245 (389)
Q Consensus       244 ~~  245 (389)
                      +.
T Consensus       499 t~  500 (644)
T KOG2395|consen  499 TL  500 (644)
T ss_pred             Ee
Confidence            53

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.45  E-value=0.062  Score=50.22  Aligned_cols=173  Identities=9%  Similarity=0.003  Sum_probs=93.5

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe------cCC--eEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS------SDG--TIRAWDTRSFHEVWSVTAGSQEIFCF  130 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~  130 (389)
                      +|.+.-.+-..-.++.-..+....+.+.+++|++  +.++..-      .|.  .|.+++.. +.. ..+... ...+.-
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~P  402 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRP  402 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCc
Confidence            6666555433223333333333467899999999  5555544      244  44444542 222 333222 348888


Q ss_pred             EEeCCCCeEEEeecC------------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE---E
Q 016457          131 SFGGSTDYLLAAGCG------------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT---F  195 (389)
Q Consensus       131 ~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i---~  195 (389)
                      .|+|+++.+.+....            +.+.+.++..++...  .  ....|..+.|+|+|. .++... ++.|++   -
T Consensus       403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGV-RAAMII-GGKVYLAVVE  476 (591)
T ss_pred             eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEE
Confidence            999998877766432            233333444333322  1  245799999999996 666655 577777   3


Q ss_pred             ecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          196 DTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       196 d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      ....+.........+. .....+..+.|. .++. |+++..++.-.+|.+
T Consensus       477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        477 QTEDGQYALTNPREVGPGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             eCCCCceeecccEEeecccCCccccceEe-cCCE-EEEEecCCCCceEEE
Confidence            3332211111112222 233446889998 5655 445555554445543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.40  E-value=0.051  Score=44.34  Aligned_cols=195  Identities=12%  Similarity=0.080  Sum_probs=114.6

Q ss_pred             eeeeeec--CcceEEEeecCCCCeEEEEecCC--eEEEEeCCCceeeeeecCC-CCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           31 SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTN--VVKLYSPVTGQYSGECKGH-SSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+.++.+  ..-.-.+.|..++.++-+.+.-|  .|+.+|+.+|+......-. .--=-.++...+   .+..-.-.++.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~~  111 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSSSE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecCCe
Confidence            3445555  44455788877887777777766  7999999999876554321 111223444433   34555567889


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-ccc---CCeeEEEEecCCCC
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHV---EDVTQVHFVPNNQN  181 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~  181 (389)
                      ..+||..+.+.+.++... ..=+.++.  ++..|+.+.....|.++|..+.+...++.- ...   ..++.+.+. +|. 
T Consensus       112 ~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-  186 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-  186 (264)
T ss_dssp             EEEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-
T ss_pred             EEEEccccceEEEEEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-
Confidence            999999999999988764 56777874  677888888789999999988877666551 111   235556665 342 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCC-----cccee------eeccCCceeeEEEecCCCcEEEEE
Q 016457          182 KVVSASVDGLICTFDTGGDINDD-----DLLES------VINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      +.|=.-....|...|..++.-..     .....      ........+.||+.|..+.++++|
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            55545555566666776653110     00000      011135678999996666666665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.39  E-value=0.074  Score=45.97  Aligned_cols=267  Identities=11%  Similarity=0.043  Sum_probs=124.7

Q ss_pred             CeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457           21 NSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL   97 (389)
Q Consensus        21 ~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l   97 (389)
                      ..+.+.|+.+ .+.++..  .+......++|+.+.++.......|+-.|+++++....+......+-...|..+.....+
T Consensus        60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen   60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred             cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence            3444555542 3444433  233445667788888776666678999999998776666666666666677543321343


Q ss_pred             EEEec----------------------CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC-----eEEE
Q 016457           98 HSCSS----------------------DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-----QIQF  150 (389)
Q Consensus        98 ~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i  150 (389)
                      +-.-.                      ...|.--|+.+|+....+.. ..-+..+.|+|.+..+++-+..|     .-+|
T Consensus       140 ~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri  218 (386)
T PF14583_consen  140 VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI  218 (386)
T ss_dssp             EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred             EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence            32211                      12344456667666555554 47788999999999988876633     1356


Q ss_pred             EECcC-Cceeeeee-ecccCCeeEEEEecCCCCeEEEEe----CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457          151 WDWRN-KKQVACLE-ESHVEDVTQVHFVPNNQNKVVSAS----VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG  224 (389)
Q Consensus       151 wd~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (389)
                      |-+++ +.....+. ......+..=-|.|+|..+...+.    .+..|.-+|+.++..     ..+...+ ....+-.+ 
T Consensus       219 W~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-----~~~~~~p-~~~H~~ss-  291 (386)
T PF14583_consen  219 WTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-----RRLMEMP-WCSHFMSS-  291 (386)
T ss_dssp             EEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-----EEEEEE--SEEEEEE--
T ss_pred             EEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-----eEEEeCC-ceeeeEEc-
Confidence            65543 22222222 112233445568899964444332    244567777775421     1122122 22333334 


Q ss_pred             CCCcEEEEEecCC----------------cEEEEEcCCCceeEEeecccccccCCccC-CCCC--ceeeecccCCCCeEE
Q 016457          225 ETNKHLWCLTHIE----------------TLSIWDWKDGQNVASFENARSLASDSWTL-DDVD--YFVDCHYPGEGENLW  285 (389)
Q Consensus       225 ~~~~~l~~~~~d~----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~  285 (389)
                      +++++++-=+.|.                -|+++++..++... +..+.    .+|.. .+..  .=....|+|||+. +
T Consensus       292 ~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~----~sw~v~~~~~q~~hPhp~FSPDgk~-V  365 (386)
T PF14583_consen  292 PDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHD----TSWKVLDGDRQVTHPHPSFSPDGKW-V  365 (386)
T ss_dssp             TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-----------BTTBSSTT----EE-TTSSE-E
T ss_pred             CCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeecc----CcceeecCCCccCCCCCccCCCCCE-E
Confidence            6677665444432                45667776654332 22111    12211 0111  1245789999985 3


Q ss_pred             EEEecCCceEEEEEec
Q 016457          286 VIGGTGAGTVGYFPVN  301 (389)
Q Consensus       286 l~~g~~dg~i~i~~~~  301 (389)
                      |++....|...||-++
T Consensus       366 lF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  366 LFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEE-TTSS-EEEEEE
T ss_pred             EEECCCCCCccEEEEe
Confidence            5677778888887654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.37  E-value=0.069  Score=49.91  Aligned_cols=185  Identities=9%  Similarity=-0.004  Sum_probs=101.1

Q ss_pred             CcceEEEeecCCCCeEEEEe------cCC--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC------
Q 016457           38 DDYVFEIVPKNDWSLMAVSL------STN--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD------  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~------~d~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------  103 (389)
                      ...+.+.+++|+|+.+|...      .|.  .|.+++.. +.......+  ...+.-.|+|++  ..|++....      
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG--~~lw~v~dg~~~~~v  423 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDA--DAVWVVVDGNTVVRV  423 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCC--CceEEEecCcceEEE
Confidence            34678899999999887765      243  45555542 333222233  237888999997  566666432      


Q ss_pred             ------CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE---EECcCCce-e---eeeeecccCCe
Q 016457          104 ------GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF---WDWRNKKQ-V---ACLEESHVEDV  170 (389)
Q Consensus       104 ------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~~v  170 (389)
                            +.+.+.++..+....   .....|..+.|+|++.+++... ++.|.+   -....+.. +   ..+...-...+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                  222222333332222   2246799999999999988876 477777   44334431 1   11221233446


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEe--cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          171 TQVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      ..+.|.+++.  |+++..++.-.+|.  +....  .. ...-.....++..++-. ++  .++....++.+
T Consensus       500 ~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~~--~~-~~~~~n~~~~v~~vaa~-~~--~iyv~~~~g~~  562 (591)
T PRK13616        500 VSLDWRTGDS--LVVGRSDPEHPVWYVNLDGSN--SD-ALPSRNLSAPVVAVAAS-PS--TVYVTDARAVL  562 (591)
T ss_pred             ccceEecCCE--EEEEecCCCCceEEEecCCcc--cc-ccCCCCccCceEEEecC-Cc--eEEEEcCCceE
Confidence            8899999984  44555544444444  44221  11 10111123456666655 22  45555555533

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.34  E-value=0.16  Score=48.65  Aligned_cols=309  Identities=13%  Similarity=0.097  Sum_probs=164.8

Q ss_pred             ccCCCCeEEEEecCcee-------eeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           16 SCDNVNSIKRFGLKNSI-------QTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        16 s~~~~~~i~~w~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      .+..||.+..+.+....       +...|..++.=-.|+..++.-+.+..|.-..+|..+ ++.+.+--.-+.--....|
T Consensus       600 valgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f  678 (1096)
T KOG1897|consen  600 VALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPF  678 (1096)
T ss_pred             EEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhccc
Confidence            35567777766553211       112234444444565554433444446666677643 4443322111111122234


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeE--EEEEEcCCCCeEEEEEeCCCCeEEEeec-----------C---CeEEEEE
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----------G---SQIQFWD  152 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~iwd  152 (389)
                      +.+..+..++++..+ .+++..++.-+.  ++++..+ .....+++.+....+.+.+.           .   ..++++|
T Consensus       679 ~s~a~~d~l~~~~~~-~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD  756 (1096)
T KOG1897|consen  679 NSDAYPDSLASANGG-ALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD  756 (1096)
T ss_pred             ccccCCceEEEecCC-ceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence            444444567776644 577776654332  3344433 55666777653333333332           1   2467777


Q ss_pred             CcCCceeeeeeecccC---CeeEEEEecCCCCeEEEEeC----------CCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457          153 WRNKKQVACLEESHVE---DVTQVHFVPNNQNKVVSASV----------DGLICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       153 ~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                      -++.+.+...+.....   .+.+..|..+...++++|+.          .|.|.+|...... ..+ +......++.+.+
T Consensus       757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~-~v~e~~v~Gav~a  834 (1096)
T KOG1897|consen  757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLE-LVAETVVKGAVYA  834 (1096)
T ss_pred             CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-cee-eeeeeeeccceee
Confidence            7666655443311222   34455588774457777763          5778888877311 111 1112223455666


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      +...  +++++|.  -...|++|+..+.+.++.-..            +..++..+.....|+  .++.|..-+.+.+-.
T Consensus       835 L~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~------------~~~~~~aL~l~v~gd--eI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  835 LVEF--NGKLLAG--INQSVRLYEWTTERELRIECN------------ISNPIIALDLQVKGD--EIAVGDLMRSITLLQ  896 (1096)
T ss_pred             hhhh--CCeEEEe--cCcEEEEEEccccceehhhhc------------ccCCeEEEEEEecCc--EEEEeeccceEEEEE
Confidence            6553  4555544  456899999988866655444            447778888888888  778888778777765


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ....+-    .....-..-+....+++         .+-.+..| +.+..+|.+.+-+.+..
T Consensus       897 y~~~eg----~f~evArD~~p~Wmtav---------eil~~d~y-lgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  897 YKGDEG----NFEEVARDYNPNWMTAV---------EILDDDTY-LGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             EeccCC----ceEEeehhhCccceeeE---------EEecCceE-EeecccccEEEEEecCC
Confidence            554331    01122222344555555         33333333 55667888888777744

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.065  Score=43.99  Aligned_cols=173  Identities=10%  Similarity=0.107  Sum_probs=110.9

Q ss_pred             ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457           76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW  153 (389)
Q Consensus        76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~  153 (389)
                      +.+-...+.++.|+|+.  +.|++......-.++=...|+.+.++... -.....+.+. .++.++.+.. ++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~--rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCc--ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEE
Confidence            34555669999999998  67777777777677766789998887653 3445567777 4444444444 888888877


Q ss_pred             cCCceeee-----ee---ecc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-------CCce
Q 016457          154 RNKKQVAC-----LE---ESH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-------GTSV  217 (389)
Q Consensus       154 ~~~~~~~~-----~~---~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~i  217 (389)
                      .....+..     +.   ..+ ......++|.|.+. .|+.+=+..-+.||......... .......+       -..+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecc
Confidence            65432211     11   012 45678899999986 78877777778888776332110 01111111       1356


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      .++.|.+..+.+|+.+.+++.+.-.|.. |..+..+.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            7888887778888888888888777765 55554444

>PRK10115 protease 2; Provisional

Probab=97.33  E-value=0.17  Score=48.65  Aligned_cols=242  Identities=11%  Similarity=0.026  Sum_probs=122.4

Q ss_pred             cceEEEeecCCCCeEEEEecC-----CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLST-----NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRA  108 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~i  108 (389)
                      -.+..+.++||+++|+.+.+.     ..|++.|+.+|+.+...-....  ..++|.+++. .++++...+     ..|..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSW-TFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCC-EEEEEEecCCCCCCCEEEE
Confidence            346678899999999887653     2688999988864432221222  4699999883 344443322     35777


Q ss_pred             EEccCC--eEEEEEEcCCCCeE-EEEEeCCCCeEEEeec---CCeEEEEECc--CCceeeeeeecccCCeeEEEEecCCC
Q 016457          109 WDTRSF--HEVWSVTAGSQEIF-CFSFGGSTDYLLAAGC---GSQIQFWDWR--NKKQVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       109 wd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      +++.++  +....+........ .+..+.++..++..+.   ++.+.+++..  .+.....+.  +...+..-..+..+.
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  281 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP--RRKDHEYSLDHYQHR  281 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE--CCCCCEEEEEeCCCE
Confidence            888877  33444544333333 2333336666665444   5689999853  333222222  222222212233332


Q ss_pred             CeEEEEeC---CCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEEEEEecCCcEEE--EEcCCCceeEEe
Q 016457          181 NKVVSASV---DGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHLWCLTHIETLSI--WDWKDGQNVASF  253 (389)
Q Consensus       181 ~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~  253 (389)
                       +++....   ...|...++..    ......+..+  ...+..+.+. . +.++++...++.-++  ++...+ .+..+
T Consensus       282 -ly~~tn~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~i~~~~~~-~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l  353 (686)
T PRK10115        282 -FYLRSNRHGKNFGLYRTRVRD----EQQWEELIPPRENIMLEGFTLF-T-DWLVVEERQRGLTSLRQINRKTR-EVIGI  353 (686)
T ss_pred             -EEEEEcCCCCCceEEEecCCC----cccCeEEECCCCCCEEEEEEEE-C-CEEEEEEEeCCEEEEEEEcCCCC-ceEEe
Confidence             3333322   12344444431    1122333444  2367778876 3 346666666765444  444322 33333


Q ss_pred             ecccccccCCccCCCCCceeeeccc--CCCCeEEEEEecC--CceEEEEEeccCC
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYP--GEGENLWVIGGTG--AGTVGYFPVNYGG  304 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~g~~--dg~i~i~~~~~~~  304 (389)
                      .-.           ....+..+.++  +++..+++...+.  -+.++.+|..+++
T Consensus       354 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        354 AFD-----------DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             cCC-----------CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            210           11222223333  4444444333333  3678888887654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.068  Score=43.62  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe-EEEEEccCCeEEEEEEcCCC--CeEEEEEeCCCCeEEEeecC-
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT-IRAWDTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLLAAGCG-  145 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-  145 (389)
                      |+++.... -...-..|+|+|... .-++.+-.-|+ ..++|....+...++...+.  -.-.=.|+|++..|+++-.| 
T Consensus        58 Gk~v~~~~-lpaR~Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          58 GKIVFATA-LPARGHGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             Cceeeeee-cccccCCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            55554432 223445688888763 55666666565 56889888776665544321  12234689899888887653 


Q ss_pred             ----CeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          146 ----SQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       146 ----~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                          |.|-+||.+.+ +.+..+. .|.-....+.+.++|+ .++.+
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGr-tlvva  179 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGR-TLVVA  179 (366)
T ss_pred             CCCCceEEEEecccccceecccc-cCCcCcceeEEecCCc-EEEEe
Confidence                78999999854 4566776 7777788999999997 66555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.29  E-value=0.00096  Score=38.37  Aligned_cols=34  Identities=18%  Similarity=0.024  Sum_probs=30.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY   72 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~   72 (389)
                      ...|.+++|+|..++||.|..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999998 4554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.011  Score=56.66  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=76.4

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCc-eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      +..++-.-.+..++.|++.|.+-..|+... .+...=..-..+|++++|+.+|  ..++.|-.+|.|.+||+..++.++.
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k~l~~  167 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAKILKV  167 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCcceee
Confidence            333333334567899998999998887642 1111112245789999999999  7999999999999999999999988


Q ss_pred             EEcCCCCeEEEE---EeCCCCeEEEeecCCeEEEEECc
Q 016457          120 VTAGSQEIFCFS---FGGSTDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus       120 ~~~~~~~v~~~~---~~~~~~~l~~~~~d~~i~iwd~~  154 (389)
                      +..+..+.+++-   +...+..++++...|.  +|.+.
T Consensus       168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            887766655543   3334555666665665  55543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.014  Score=56.29  Aligned_cols=211  Identities=11%  Similarity=0.115  Sum_probs=112.3

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE-----EEEEcC------CCCeEEEEEeCCCCe-EEEeecCCeEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV-----WSVTAG------SQEIFCFSFGGSTDY-LLAAGCGSQIQ  149 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~~-l~~~~~d~~i~  149 (389)
                      +|..+...++..-..++..+.+-.|..||+++-...     .-+..|      ..-..++.|+|.=.. .+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455555566752112333334447889998753221     111211      244567888876544 34445588888


Q ss_pred             EEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-cCCceeeEEEecCCC
Q 016457          150 FWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFGETN  227 (389)
Q Consensus       150 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  227 (389)
                      +..+.... .+..+.  .....++++|+|.|+ .++.|-..|++.-|-..-...  ..+..... ....|.+|+|. ...
T Consensus       182 V~~~~~~~~~v~s~p--~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl-~t~  255 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP--VTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWL-STQ  255 (1405)
T ss_pred             hhhhhhhhhhhcccC--cccceeeEEeccccc-eeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEe-cce
Confidence            88765432 233333  567789999999997 999999999999887763211  11111111 14678999998 444


Q ss_pred             cEEEEEec-CC--------cEEEEEcCCCceeEEeecccccccCCc----cCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          228 KHLWCLTH-IE--------TLSIWDWKDGQNVASFENARSLASDSW----TLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       228 ~~l~~~~~-d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      .++++-+. ++        ..+++... ...-..|...... ...|    +..|...+.-..|.++...+.|++.+....
T Consensus       256 eflvvy~n~ts~~~dpd~y~~~~~k~k-p~g~~nF~E~~d~-tppfg~~~rq~h~y~~~L~~W~~~~~~vVvvansaSsE  333 (1405)
T KOG3630|consen  256 EFLVVYGNVTSETDDPDSYDQKMYKIK-PDGSANFQETFDI-TPPFGQIVRQPHMYKVTLSGWIEPDANVVVVANSASSE  333 (1405)
T ss_pred             eEEEEecccccCcCCchhhhhcccccc-CcceeeeccccCC-CCCccccCccchhHHHhhhhhcccccceEEEecccccc
Confidence            45443322 11        11111111 0001111110000 0001    122445555667888777666666666666


Q ss_pred             EEEEEe
Q 016457          295 VGYFPV  300 (389)
Q Consensus       295 i~i~~~  300 (389)
                      |-||..
T Consensus       334 vsila~  339 (1405)
T KOG3630|consen  334 VSILAS  339 (1405)
T ss_pred             hhhhhh
Confidence            666665

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.053  Score=50.68  Aligned_cols=185  Identities=9%  Similarity=-0.030  Sum_probs=91.8

Q ss_pred             CCCeEEEEecC------CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCCe
Q 016457           49 DWSLMAVSLST------NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSFH  115 (389)
Q Consensus        49 ~~~~l~~~~~d------~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  115 (389)
                      ++.+.++|+.+      ..+..||+.+.+-  +..+....... +++.. ++  .+.+.||.++     ++..||..+.+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~-~g--~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI-DD--TIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE-CC--EEEEECCcCCCCCCceEEEEECCCCe
Confidence            56677777753      3577888776532  22222111122 23333 45  5777887754     47889987664


Q ss_pred             EEE--EEEcCCCCeEEEEEeCCCCeEEEeecC-----------------------CeEEEEECcCCce--eeeeeecccC
Q 016457          116 EVW--SVTAGSQEIFCFSFGGSTDYLLAAGCG-----------------------SQIQFWDWRNKKQ--VACLEESHVE  168 (389)
Q Consensus       116 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~iwd~~~~~~--~~~~~~~~~~  168 (389)
                      -..  .+.........+.+  ++...+.||.+                       ..+..||.++.+-  +..+.  ...
T Consensus       379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r  454 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGT  454 (557)
T ss_pred             EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccc
Confidence            322  11111112222222  44555555543                       2477788776543  22222  111


Q ss_pred             CeeEEEEecCCCCeEEEEeCC------CcEEEEecCC-CCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC--cE
Q 016457          169 DVTQVHFVPNNQNKVVSASVD------GLICTFDTGG-DINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE--TL  239 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i  239 (389)
                      .-.+++.. ++. +.+.|+.+      ..+..||..+ ..  ...+..+.. ......++..  ++.+.++|+.++  .+
T Consensus       455 ~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~  527 (557)
T PHA02713        455 IRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTES-RLSALHTILH--DNTIMMLHCYESYMLQ  527 (557)
T ss_pred             ccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCc-ccccceeEEE--CCEEEEEeeecceeeh
Confidence            11223322 243 67777654      2467888885 21  222222221 1222333333  567888888887  56


Q ss_pred             EEEEcCCCc
Q 016457          240 SIWDWKDGQ  248 (389)
Q Consensus       240 ~i~d~~~~~  248 (389)
                      ..||..+.+
T Consensus       528 e~yd~~~~~  536 (557)
T PHA02713        528 DTFNVYTYE  536 (557)
T ss_pred             hhcCccccc
Confidence            666665543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.21  E-value=0.066  Score=48.25  Aligned_cols=177  Identities=12%  Similarity=0.060  Sum_probs=100.0

Q ss_pred             CcceEEEeecCCCCeEEEEe--cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC--CEEEEEecCCeEEEEEcc-
Q 016457           38 DDYVFEIVPKNDWSLMAVSL--STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTR-  112 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~iwd~~-  112 (389)
                      -.+|..++|....+.+.+.-  .+|.+++=|   .+.+    |.-+.|..+.|.|-+..  ..|++....+.|.+|.+. 
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            45678888874444444432  133332221   1222    33456899999986421  245555667789999986 


Q ss_pred             ----CCeEEEEEEcC---CCC--eEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCC
Q 016457          113 ----SFHEVWSVTAG---SQE--IFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       113 ----~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                          ..+.+..-..+   .-+  -..+.|+|....|.+-.....-.+++++..  .....+.  ..+.|.|.+|.++|..
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCE
Confidence                22222221111   112  236789988877776665444345555533  3334443  5678999999999974


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF  223 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (389)
                      ++++.+..=.-++||-..+....-.....+..++.|.++.-.
T Consensus       170 LVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT  211 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT  211 (671)
T ss_pred             EEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence            444445555578888763322222233445556677776654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.072  Score=41.34  Aligned_cols=187  Identities=13%  Similarity=0.096  Sum_probs=109.0

Q ss_pred             CEEEEEecCC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecccCCee
Q 016457           95 HVLHSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        95 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                      .++.+.+.-|  .|++||+++++.+.+-+.....+..=-...-++.+..-. .+|.-..+|.++.+.+..+.  ..+.=.
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~GeGW  134 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEGEGW  134 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCCcce
Confidence            5777766443  699999999998876654322222211111234444433 47888999999988888776  444445


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV  250 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  250 (389)
                      .++.  ++.+ |+.+....+++.-|..+............+. -..++.+.|-  +|...+-.-.+..|...+..+|+.+
T Consensus       135 gLt~--d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~  209 (262)
T COG3823         135 GLTS--DDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV  209 (262)
T ss_pred             eeec--CCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence            5554  3433 4444445567776766432211111111111 1233445564  4556665556667778888889888


Q ss_pred             EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      ..+....-.........|..-...+++.|++++ ++++|
T Consensus       210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG  247 (262)
T COG3823         210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG  247 (262)
T ss_pred             EEEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence            777644333323333335567788999998876 45676

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.16  E-value=0.024  Score=50.97  Aligned_cols=154  Identities=10%  Similarity=0.116  Sum_probs=94.1

Q ss_pred             CCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC----CCeEEEEeCCCcEEEEe
Q 016457          124 SQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN----QNKVVSASVDGLICTFD  196 (389)
Q Consensus       124 ~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~i~i~d  196 (389)
                      -.++..++|. +|+.++...-   +|.+++=|   .+.+.+|+     .|..+.|.|-+    + .+++......|.+|.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQ   88 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC-ceEEEeccceEEEEE
Confidence            4688999998 8877776653   55555433   23444443     47889998863    3 456666688999999


Q ss_pred             cCCCCCC-Cccce-eeecc--CCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--eEEeecccccccCCccCCC
Q 016457          197 TGGDIND-DDLLE-SVINV--GTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDD  268 (389)
Q Consensus       197 ~~~~~~~-~~~~~-~~~~~--~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~  268 (389)
                      +.....+ .+.+. +.-..  ..+  ...+.|+ |....|++-+....-.+++++....  ...+.             .
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-------------~  154 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVSVLPSVHCDSSRVKADIK-------------T  154 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCceeEeeeeeeCCceEEEecc-------------C
Confidence            8732111 11111 11111  112  2467798 5566776666555444666654322  22232             3


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .+.|.+.+|.+||+++.++.|+ .=.-+|||-..
T Consensus       155 ~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q  187 (671)
T PF15390_consen  155 SGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ  187 (671)
T ss_pred             CceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence            4889999999999998777775 45567887543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.14  E-value=0.27  Score=47.45  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=125.9

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCc--------EEEEEEeCC--------------CCCCEEEEEecCCeEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST--------VNQISFSGP--------------STPHVLHSCSSDGTIR  107 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~  107 (389)
                      +..|++++.++.|.-.|..+|+.+..+......        ...+.+...              -....++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457788888899999999999998887532211        122333211              0114788889999999


Q ss_pred             EEEccCCeEEEEEEcCCCCeE-------------EEEEeC--CCCeEEEeec----------CCeEEEEECcCCceeeee
Q 016457          108 AWDTRSFHEVWSVTAGSQEIF-------------CFSFGG--STDYLLAAGC----------GSQIQFWDWRNKKQVACL  162 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~  162 (389)
                      -.|.++|+.+..+... +.|.             .+.-.|  .++.+++++.          +|.|+-+|.++++.+..+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999999876532 1110             011111  2456777643          588999999999999887


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      ....... ...  .+.+. ....++.+. ...-+|.+.+.     +  +.....+.  ..+...+ .........++|.-
T Consensus       353 ~~g~p~~-~~~--~~~g~-~~~~gg~n~W~~~s~D~~~gl-----v--y~ptGn~~--pd~~g~~-r~~~~n~y~~slvA  418 (764)
T TIGR03074       353 DPGNPDP-TAP--PAPGE-TYTRNTPNSWSVASYDEKLGL-----V--YLPMGNQT--PDQWGGD-RTPADEKYSSSLVA  418 (764)
T ss_pred             ecCCCCc-ccC--CCCCC-EeccCCCCccCceEEcCCCCe-----E--EEeCCCcc--ccccCCc-cccCcccccceEEE
Confidence            6221111 100  11222 222222111 23334443221     1  11111000  0000000 00000112456777


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCC-eEEEEEecCCceEEEEEeccCCc
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGE-NLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .|.++|+..-.++...   ...|..+-.....-+.+.. +|+ .-.++.++.+|.++++|-++++.
T Consensus       419 LD~~TGk~~W~~Q~~~---hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       419 LDATTGKERWVFQTVH---HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             EeCCCCceEEEecccC---CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            7888888776665421   1122222112222222322 442 22678999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.14  E-value=0.17  Score=44.85  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             EEeecCCCCeEEEEecCCeEEE---EeCC-----CceeeeeecC---CC--CcEEEEEEeCCC---------CCCEEEEE
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKL---YSPV-----TGQYSGECKG---HS--STVNQISFSGPS---------TPHVLHSC  100 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~i---w~~~-----~~~~~~~~~~---~~--~~v~~i~~~~~~---------~~~~l~s~  100 (389)
                      .++.+|++..||.+..+..+.+   |+..     .++....+.+   +.  +.|+++.+-|-.         ....++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5678999999999987776655   5331     1222222221   22  578888876531         11589999


Q ss_pred             ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe
Q 016457          101 SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG  133 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  133 (389)
                      ..+|.|++|.. +|..+..-..|..+|..+.+.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            99999999995 566666556677788877764

>PHA02713 hypothetical protein; Provisional

Probab=97.11  E-value=0.062  Score=50.20  Aligned_cols=214  Identities=9%  Similarity=0.021  Sum_probs=100.5

Q ss_pred             eEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC------CeEEEEEccCCeEEE--EEEcCCCCeEEE
Q 016457           61 VVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD------GTIRAWDTRSFHEVW--SVTAGSQEIFCF  130 (389)
Q Consensus        61 ~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~  130 (389)
                      .+..||..+++-.  ..+...... .+++.. ++  .+++.||.+      ..+..||+.+..-..  .+....... ++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l-~~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAIV-DN--EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEEE-CC--EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE
Confidence            5677888765422  222211111 233333 44  577777754      346778887664321  111111222 23


Q ss_pred             EEeCCCCeEEEeecCC-----eEEEEECcCCcee--eeeeecccCCeeEEEEecCCCCeEEEEeCCC-------------
Q 016457          131 SFGGSTDYLLAAGCGS-----QIQFWDWRNKKQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDG-------------  190 (389)
Q Consensus       131 ~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------------  190 (389)
                      +.. ++...+.||.++     .+..||..+.+-.  ..+.  ....-.+++. -++ .+.+.|+.++             
T Consensus       348 ~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp--~~r~~~~~~~-~~g-~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        348 AVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP--IALSSYGMCV-LDQ-YIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             EEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC--cccccccEEE-ECC-EEEEEeCCCcccccccccccccc
Confidence            332 455555666543     4888998865422  2222  1111112222 234 3777777542             


Q ss_pred             ----------cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC------cEEEEEcCC-Cc--eeE
Q 016457          191 ----------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE------TLSIWDWKD-GQ--NVA  251 (389)
Q Consensus       191 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~-~~--~~~  251 (389)
                                .+..||..+..  ...+..+. ....-.+++..  ++.+.+.|+.++      .+..||..+ .+  .+.
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~--W~~v~~m~-~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNI--WETLPNFW-TGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             cccccccccceEEEECCCCCe--EeecCCCC-cccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                      46778877532  11111111 11111223332  456666676542      456788775 32  222


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc--eEEEEEeccCCc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG--TVGYFPVNYGGA  305 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~  305 (389)
                      .+...+            . ...++.. ++ + +.+.|+.+|  .+..||..+.+-
T Consensus       498 ~m~~~r------------~-~~~~~~~-~~-~-iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        498 TTESRL------------S-ALHTILH-DN-T-IMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             ccCccc------------c-cceeEEE-CC-E-EEEEeeecceeehhhcCcccccc
Confidence            222111            1 1112221 33 3 456777777  778888888765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.08  E-value=0.11  Score=48.55  Aligned_cols=187  Identities=13%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             CCCeEEEEecC------CeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC------CeEEEEEccCC
Q 016457           49 DWSLMAVSLST------NVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD------GTIRAWDTRSF  114 (389)
Q Consensus        49 ~~~~l~~~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~  114 (389)
                      .+.++++|+.+      ..+..||..+++-.  ..+. ....-.+++...+   .+.++||.|      .++-.||..+.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence            45577777776      36888998876332  2233 2333455666643   588899988      35677888776


Q ss_pred             eEEE--EEEcCCCCeEEEEEeCCCCeEEEeecCC-----eEEEEECcCCceeeeeeecccCCeeEEEE-ecCCCCeEEEE
Q 016457          115 HEVW--SVTAGSQEIFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNKKQVACLEESHVEDVTQVHF-VPNNQNKVVSA  186 (389)
Q Consensus       115 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~  186 (389)
                      +-..  .+....... +++.. .+...++||.||     +|-.||.++.+--..-.  .......... .-+| .+.++|
T Consensus       360 ~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g-~iYi~G  434 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGG-KLYIIG  434 (571)
T ss_pred             ceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECC-EEEEEc
Confidence            5332  222222222 22222 566666677775     57888887654322111  1112222221 2234 377777


Q ss_pred             eCCC------cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCce
Q 016457          187 SVDG------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQN  249 (389)
Q Consensus       187 ~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~  249 (389)
                      +.++      .+..||..++.  ...+..+. ....-..++..  ++.+.+.|+.|+     ++..||..+.+-
T Consensus       435 G~~~~~~~l~sve~YDP~t~~--W~~~~~M~-~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNT--WTLIAPMN-TRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             CcCCCccccceEEEEcCCCCc--eeecCCcc-cccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence            7554      46788888543  11111111 11122234443  566788888776     366777766543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.02  E-value=0.24  Score=44.64  Aligned_cols=199  Identities=13%  Similarity=0.072  Sum_probs=105.4

Q ss_pred             cEEEEEEeCCCCCCEEEEE-ecCC----eEEEEEccCCeEEEEE-EcCCCCeEEEEEeCCCCeEEEeecCC---------
Q 016457           82 TVNQISFSGPSTPHVLHSC-SSDG----TIRAWDTRSFHEVWSV-TAGSQEIFCFSFGGSTDYLLAAGCGS---------  146 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~---------  146 (389)
                      .+....++|++  ++++.+ +..|    .++++|+.+++.+... ..  .....+.|.+++..++....+.         
T Consensus       125 ~~~~~~~Spdg--~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDG--KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTS--SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCC--CEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            44467889999  566643 4444    5999999999876532 32  2233499998888887776532         


Q ss_pred             --eEEEEECcCCcee--eeeeecccCC-eeEEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCcee
Q 016457          147 --QIQFWDWRNKKQV--ACLEESHVED-VTQVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVG  218 (389)
Q Consensus       147 --~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~  218 (389)
                        .|+.|.+.+...-  ..+....... ...+..+++++.+++.....   ..+.+.|+............+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence              3777887765432  3333122233 66888999997334444433   34788888753111223333333333333


Q ss_pred             e-EEEecCCCcEEEEEec---CCcEEEEEcCCCce---eEEeecccccccCCccCCCCC--ceeeecccCCCCeEEEEEe
Q 016457          219 K-VGFFGETNKHLWCLTH---IETLSIWDWKDGQN---VASFENARSLASDSWTLDDVD--YFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       219 ~-~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~g  289 (389)
                      . +...  ++.+++....   .+.|...++.+...   ...+..            +..  .+..+..  .++. +++..
T Consensus       281 ~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~--~~~~-Lvl~~  343 (414)
T PF02897_consen  281 YYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSL--FKDY-LVLSY  343 (414)
T ss_dssp             EEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEE--ETTE-EEEEE
T ss_pred             EEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC------------CCCceeEEEEEE--ECCE-EEEEE
Confidence            3 3333  3334433322   24676777776642   223332            223  3444444  3443 34444


Q ss_pred             cCCc--eEEEEEec
Q 016457          290 TGAG--TVGYFPVN  301 (389)
Q Consensus       290 ~~dg--~i~i~~~~  301 (389)
                      ..++  .|+++++.
T Consensus       344 ~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  344 RENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTEEEEEEEETT
T ss_pred             EECCccEEEEEECC
Confidence            4443  67788887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.99  E-value=0.069  Score=42.24  Aligned_cols=171  Identities=13%  Similarity=0.093  Sum_probs=96.3

Q ss_pred             CccccCCCCeEEEEecC----ceeeeeec------CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC---
Q 016457           13 KSQSCDNVNSIKRFGLK----NSIQTNFG------DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH---   79 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~----~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---   79 (389)
                      ..+.|+..--|--||-.    ...+++..      +...+.-..+|+|++ ..|.....--.+....+.+..-+.+|   
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~  151 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVE  151 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCce
Confidence            34455555556667632    22333221      455666778999988 44443211112222222222222222   


Q ss_pred             -----CCcEEEEEEeCCCCCCEEEEEecCCeEEEEE--ccCC-----eEEEEEEcC----CCCeEEEEEeCCCCeEEEee
Q 016457           80 -----SSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--TRSF-----HEVWSVTAG----SQEIFCFSFGGSTDYLLAAG  143 (389)
Q Consensus        80 -----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd--~~~~-----~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~  143 (389)
                           -.--+.++|..+.. .+.++-+.+-+|.-||  ..+|     +.+..++..    .-..-.++....+...+++-
T Consensus       152 ~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  152 LIWNCVGISNGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             eeehhccCCccccccccCc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence                 23346788986663 4555666777888888  4444     333333321    12223455564555555555


Q ss_pred             cCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          144 CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       144 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      ..++|...|..+++.+.++. -....|+|++|-..+-..+++.
T Consensus       231 ng~~V~~~dp~tGK~L~eik-lPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGKILLEIK-LPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             cCcEEEEECCCCCcEEEEEE-cCCCceEEEEecCCCccEEEEE
Confidence            67899999999999999998 5578899999975532244443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.0065  Score=58.01  Aligned_cols=92  Identities=12%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             cCCCCeEEEEecCceeee-eec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE---EEe
Q 016457           17 CDNVNSIKRFGLKNSIQT-NFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI---SFS   89 (389)
Q Consensus        17 ~~~~~~i~~w~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i---~~~   89 (389)
                      +++.|.+-..|....+.. ..+   .++|++++|+.+|+.++.|-.+|.|.+||+.++++++.+..|..+.+.+   .+.
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t  184 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT  184 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe
Confidence            344455555554332221 122   8899999999999999999999999999999999988887666554444   344


Q ss_pred             CCCCCCEEEEEecCCeEEEEEcc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      ..+  ..++++...|.  +|.+.
T Consensus       185 ~~n--S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  185 SQN--SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCC--cEEEEccCCCc--eEEEE
Confidence            444  47888888775  67654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0045  Score=35.63  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|..++|+|..  ++||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~m--dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTM--DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCC--CEEEEEECCCeEEEEEC-CCcC
Confidence            4569999999999  79999999999999998 4544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.81  E-value=0.18  Score=40.01  Aligned_cols=222  Identities=11%  Similarity=0.076  Sum_probs=119.2

Q ss_pred             CeEEEEecCCeEEEEeCCCceeee-eecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEcc--CCeEEEEEEc----
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSG-ECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTR--SFHEVWSVTA----  122 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~--~~~~~~~~~~----  122 (389)
                      .++.+--..+.|.-||..+.+... ++.+.  ++..+.+--.+.++.++.+ +..-.|.-||..  ......++..    
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            455555556777778887654332 23322  2334444333322344443 333334556633  2223333111    


Q ss_pred             -CCCCeEEEEEeCCCCeEEEeec-C---------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          123 -GSQEIFCFSFGGSTDYLLAAGC-G---------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       123 -~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                       .+...+.-..+|++++ +.+.. |         |.++.|-..  ..+..+. ..-.--+.++|+.+.+.+.++-+.+-.
T Consensus       106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeee-hhccCCccccccccCcEEEEEccCceE
Confidence             1345566677888777 44433 2         344444322  1222222 222334678898887656667777778


Q ss_pred             EEEEe--cCCCCCC-Cccceeeec---cC-CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          192 ICTFD--TGGDIND-DDLLESVIN---VG-TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       192 i~i~d--~~~~~~~-~~~~~~~~~---~~-~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      |.-||  ..++... ...+..+..   .+ -....++.. .+|.+.++.-..++|..+|..+|+.+.++.-.        
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------  252 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------  252 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------
Confidence            87777  4444311 111211211   11 122345555 56777888888889999999999999998863        


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecC
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                          ...+++++|--.+-.++.+++..
T Consensus       253 ----t~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  253 ----TPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             ----CCceEEEEecCCCccEEEEEehh
Confidence                37899999975432223444433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.77  E-value=0.57  Score=45.18  Aligned_cols=220  Identities=11%  Similarity=0.013  Sum_probs=117.7

Q ss_pred             cCCCCeEEEEecCc-----eeeeeecCcceEEEe--ecC--CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEE
Q 016457           17 CDNVNSIKRFGLKN-----SIQTNFGDDYVFEIV--PKN--DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQIS   87 (389)
Q Consensus        17 ~~~~~~i~~w~~~~-----~~~~~~~~~~v~~~~--~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~   87 (389)
                      +..||++++..-+-     ....+.|-..++.+.  +.+  |. +|+.+-. +.-++..+...-......+-......+.
T Consensus       378 a~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif  455 (1096)
T KOG1897|consen  378 AFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIF  455 (1096)
T ss_pred             CCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEeccccccccCceEE
Confidence            44679999988652     222334455666666  443  33 6666553 3445555442211112222223333343


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      .+.-.. +.|+=...+ .||+++-.  ..+..+... ..++....+.+...++.++.++.+...++..............
T Consensus       456 ~S~i~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e  530 (1096)
T KOG1897|consen  456 CSTING-NQLVQVTSN-SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFE  530 (1096)
T ss_pred             EEccCC-ceEEEEecc-cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheec
Confidence            333221 334433333 47777643  233444443 4444444444667888888888888888876653333222345


Q ss_pred             CCeeEEEEecC--CCC---eEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          168 EDVTQVHFVPN--NQN---KVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       168 ~~v~~~~~~~~--~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      ..|.|+.++|.  +++   +++.|..+..+.+.-.....  .........   .+..|.-..+- .+..+|+++..||.+
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~--~~~~~~~l~~~~iPRSIl~~~~e-~d~~yLlvalgdG~l  607 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL--ILITHEQLSGEIIPRSILLTTFE-GDIHYLLVALGDGAL  607 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc--ceeeeeccCCCccchheeeEEee-ccceEEEEEcCCceE
Confidence            67999999976  444   78888877665554333110  011111111   22334444454 446799999999988


Q ss_pred             EEEEcCC
Q 016457          240 SIWDWKD  246 (389)
Q Consensus       240 ~i~d~~~  246 (389)
                      ..|.+..
T Consensus       608 ~~fv~d~  614 (1096)
T KOG1897|consen  608 LYFVLDI  614 (1096)
T ss_pred             EEEEEEc
Confidence            7766543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.71  E-value=0.3  Score=45.70  Aligned_cols=213  Identities=12%  Similarity=0.072  Sum_probs=106.0

Q ss_pred             CeEEEEecCce-eeeeec---CcceEEEeecCCCCeEEEEecC------CeEEEEeCCCceee--eeecCCCCcEEEEEE
Q 016457           21 NSIKRFGLKNS-IQTNFG---DDYVFEIVPKNDWSLMAVSLST------NVVKLYSPVTGQYS--GECKGHSSTVNQISF   88 (389)
Q Consensus        21 ~~i~~w~~~~~-~~~~~~---~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~   88 (389)
                      ..+..+|.... ...+..   ...-.+++.. ++...++|+.+      ..+..||..+++-.  ..+....... +++.
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE
Confidence            45666666532 222222   2233444444 34688888888      36778888766522  2222222222 2333


Q ss_pred             eCCCCCCEEEEEecCCe-----EEEEEccCCeEE--EEEEcCCCCeEEEEEeCCCCeEEEeecC------CeEEEEECcC
Q 016457           89 SGPSTPHVLHSCSSDGT-----IRAWDTRSFHEV--WSVTAGSQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRN  155 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~  155 (389)
                      . ++  .+.++||.||.     +-.||..+.+-.  ..+.......-.+.+  ++...++||.+      .++..||..+
T Consensus       379 l-~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t  453 (571)
T KOG4441|consen  379 L-DG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPET  453 (571)
T ss_pred             E-CC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCC
Confidence            3 45  58889998874     667777654432  111111122222223  45555556543      4678899887


Q ss_pred             CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc-----EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL-----ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      ++-...-.......-..++... + .+++.|+.|+.     |..||..+..  ...+ ........-..++.  -++...
T Consensus       454 ~~W~~~~~M~~~R~~~g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v-~~m~~~rs~~g~~~--~~~~ly  526 (571)
T KOG4441|consen  454 NTWTLIAPMNTRRSGFGVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQ--WTMV-APMTSPRSAVGVVV--LGGKLY  526 (571)
T ss_pred             CceeecCCcccccccceEEEEC-C-EEEEECCccCCCccceEEEEcCCCCc--eeEc-ccCccccccccEEE--ECCEEE
Confidence            6532221100111122234333 3 38888887763     6778888542  1222 11112222223333  356677


Q ss_pred             EEEecCC-----cEEEEEcCCC
Q 016457          231 WCLTHIE-----TLSIWDWKDG  247 (389)
Q Consensus       231 ~~~~~d~-----~i~i~d~~~~  247 (389)
                      ++|+.|+     +|..||..+.
T Consensus       527 ~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  527 AVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEecccCccccceeEEcCCCCC
Confidence            8888776     4555555443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.047  Score=52.90  Aligned_cols=149  Identities=10%  Similarity=-0.044  Sum_probs=93.2

Q ss_pred             CCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceee-----eee-----ecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          124 SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVA-----CLE-----ESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       124 ~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      ..++..+...++....++...  +-.|..||+++...-.     -+.     ........++.|+|.-+...+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            345555666656544444333  4489999998643211     010     0123456788999987666777888999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      |++..+.-    ..............++++|+ +.|+.+++|-..|++.-|... .+....+......        ....
T Consensus       180 l~V~~~~~----~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~--------e~yr  245 (1405)
T KOG3630|consen  180 LRVKSTKQ----LAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE--------ENYR  245 (1405)
T ss_pred             hhhhhhhh----hhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-cceeecccCCCcC--------CCcc
Confidence            99887762    12222223445678999999 788899999999999988754 4444444332211        2367


Q ss_pred             eeeecccCCCCeEEEEE
Q 016457          272 FVDCHYPGEGENLWVIG  288 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~  288 (389)
                      |.+++|-....  |++.
T Consensus       246 vl~v~Wl~t~e--flvv  260 (1405)
T KOG3630|consen  246 VLSVTWLSTQE--FLVV  260 (1405)
T ss_pred             eeEEEEeccee--EEEE
Confidence            88999987655  5443

>PHA03098 kelch-like protein; Provisional

Probab=96.39  E-value=0.32  Score=45.55  Aligned_cols=185  Identities=10%  Similarity=0.047  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCC------eEEEEeCCCceeee--eecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEEEEccCC
Q 016457           48 NDWSLMAVSLSTN------VVKLYSPVTGQYSG--ECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRAWDTRSF  114 (389)
Q Consensus        48 ~~~~~l~~~~~d~------~i~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  114 (389)
                      .++..++.|+.++      .+..||..+.+-..  .+....... +++.. ++  .+++.||.+     ..+..||..+.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~--~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NN--RIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CC--EEEEEeCCCCCEecceEEEEcCCCC
Confidence            3455667776532      57788877654322  111111122 22222 44  577777765     34677887765


Q ss_pred             eEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC------CeEEEEECcCCceee--eeeecccCCeeEEEEecCCCCeEE
Q 016457          115 HEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRNKKQVA--CLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       115 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      +-...  +....... +++.. ++..++.||.+      ..+..||+.+.+-..  .+.  ....-.+++.. ++ .+++
T Consensus       369 ~W~~~~~lp~~r~~~-~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~~-~~-~iyv  442 (534)
T PHA03098        369 KWREEPPLIFPRYNP-CVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYH-DG-KIYV  442 (534)
T ss_pred             ceeeCCCcCcCCccc-eEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccccCceEEEE-CC-EEEE
Confidence            43221  11111111 22222 44455555531      468889987654321  111  11111223332 34 3667


Q ss_pred             EEeCC--------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCC
Q 016457          185 SASVD--------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDG  247 (389)
Q Consensus       185 ~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~  247 (389)
                      .|+.+        ..+.+||..+..  ...+.... ....-.+++..  ++.+++.|+.+     +.+.+||..+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNK--WTELSSLN-FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCc--eeeCCCCC-cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            77643        238888887542  11111111 11111122222  45566666654     35677776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.69  Score=43.28  Aligned_cols=184  Identities=12%  Similarity=0.087  Sum_probs=96.8

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE----EcCCCCeEEEEEeC
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV----TAGSQEIFCFSFGG  134 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~  134 (389)
                      --.|+||+.. |+++..+.-....+-.+.|+.+.   .|+....+|++.+|++- |+.+...    ......|..+.+. 
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e---eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f-  136 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE---ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFF-  136 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc---eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEe-
Confidence            3468899865 77777665444478889999765   78888999999999975 3332221    1122334444443 


Q ss_pred             CCCeEEEeecCCeEEEE-ECcCCceeeeeee--cccCCeeEEEEecCCCCeEEEEeCCCc--EEEEecCCCCCCCcccee
Q 016457          135 STDYLLAAGCGSQIQFW-DWRNKKQVACLEE--SHVEDVTQVHFVPNNQNKVVSASVDGL--ICTFDTGGDINDDDLLES  209 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~  209 (389)
                      .++..+... +|.+.+- +... ..+.++..  ....+-+|-...+++.+......-+..  ..++-....   ......
T Consensus       137 ~~GVavlt~-~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~~q~~~  211 (829)
T KOG2280|consen  137 HNGVAVLTV-SGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---RVQLHA  211 (829)
T ss_pred             cCceEEEec-CCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---cccccc
Confidence            233333333 3444433 3322 12222221  112222333333332111111111100  111111111   111222


Q ss_pred             eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          210 VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +....+.+..+..+ ++..+|+.-...|.|.+-+....+....+.
T Consensus       212 ~~~~~~~~~ki~VS-~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  212 LSWPNSSVVKISVS-PNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cCCCCceEEEEEEc-CCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            22234677888888 788899999999999998887777666665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.58  Score=43.77  Aligned_cols=178  Identities=12%  Similarity=0.119  Sum_probs=91.9

Q ss_pred             CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---ecccCCeeEEEEecCC
Q 016457          103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---ESHVEDVTQVHFVPNN  179 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~  179 (389)
                      --.|+|+++ +|+.+..+......+..+.|+ +...|++...+|++++|++- ++.+....   +.....|....+..+|
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs-~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWS-DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeeccc-CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence            345888886 477776665555689999999 78899999999999999975 33322211   1223345555555555


Q ss_pred             CCeEEEEeCCCcEEEE-ecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCc--EEEEEcCCC-ceeEE
Q 016457          180 QNKVVSASVDGLICTF-DTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIET--LSIWDWKDG-QNVAS  252 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~-~~~~~  252 (389)
                         +++-..+|.+.+- +....     .......   ...+-.+....++.........-+-.  ..++-.... .....
T Consensus       140 ---Vavlt~~g~v~~i~~~~~~-----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  140 ---VAVLTVSGQVILINGVEEP-----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA  211 (829)
T ss_pred             ---eEEEecCCcEEEEcCCCcc-----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence               3333334554443 33311     1111111   11111222222222111111111100  011111111 01111


Q ss_pred             eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          253 FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +..            ....+..+..||+.+  +|+--...|.|.+-+.+..+.
T Consensus       212 ~~~------------~~~~~~ki~VS~n~~--~laLyt~~G~i~~vs~D~~~~  250 (829)
T KOG2280|consen  212 LSW------------PNSSVVKISVSPNRR--FLALYTETGKIWVVSIDLSQI  250 (829)
T ss_pred             cCC------------CCceEEEEEEcCCcc--eEEEEecCCcEEEEecchhhh
Confidence            111            125678899999988  788888899999988876543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.16  E-value=0.69  Score=39.23  Aligned_cols=156  Identities=17%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEEC-cCC
Q 016457           78 GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDW-RNK  156 (389)
Q Consensus        78 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~  156 (389)
                      .-...+..+..++++  .+++++..-..+.-||.-...-...-+.....|..|.|.|++...+ .+..|.|+.=+. ...
T Consensus       142 ~~~gs~~~~~r~~dG--~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  142 ETSGSINDITRSSDG--RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDG  218 (302)
T ss_dssp             S----EEEEEE-TTS---EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEE
T ss_pred             CCcceeEeEEECCCC--cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCc
Confidence            345678889889998  6777776655566777543222222222368999999997755444 557788888772 222


Q ss_pred             ceeee-eee--cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          157 KQVAC-LEE--SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       157 ~~~~~-~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      +.-.. +..  ...-.+..++|.+++. ..++|+ .|.+. .....++ .-+..............+.|.++  +.-++.
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~--~~gf~l  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGK-TWQKDRVGENVPSNLYRIVFVNP--DKGFVL  292 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTS-S-EE-GGGTTSSS---EEEEEET--TEEEEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCc-cceECccccCCCCceEEEEEcCC--CceEEE
Confidence            21111 110  1233478999998874 666555 55443 3444332 22222222234556788888734  355666


Q ss_pred             ecCCcEEEE
Q 016457          234 THIETLSIW  242 (389)
Q Consensus       234 ~~d~~i~i~  242 (389)
                      +.+|.|--|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            677876544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.11  E-value=0.6  Score=43.64  Aligned_cols=111  Identities=8%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-----C-
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-----S-  113 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-----~-  113 (389)
                      +.-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.....++.+++.|....|.++.-.     . 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3344444444444444445689999998876433222 35788999999765555788888999999998532     1 


Q ss_pred             ---CeEEEEE--EcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457          114 ---FHEVWSV--TAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDW  153 (389)
Q Consensus       114 ---~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  153 (389)
                         ..++..+  ..+ ..+|.+..|.++| .+++++. +.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG-NQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC-CEEEEECC
Confidence               1233333  333 4789999999555 4444332 68888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.10  E-value=0.63  Score=43.51  Aligned_cols=123  Identities=10%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEe--cCCCCeEEEEeCCCcEEEEe
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV--PNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~i~d  196 (389)
                      ++...-..+.-+.-+..++.-++-.....+.|||.+.+.....-.....+.|..+.|.  |++. .+++.+..+.|.+|-
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~  102 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYT  102 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEE
Confidence            3444444555555554444444444456899999998875443332347889999985  6775 666777788888875


Q ss_pred             cC-----CCCCCCccceee--ecc-CCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          197 TG-----GDINDDDLLESV--INV-GTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       197 ~~-----~~~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      -.     ...+....++.+  ..+ ..+|.+..|. ++|.++ +|+ ++.+.|+|-.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~Lv-V~s-GNqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLV-VGS-GNQLFVFDKW  156 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEE-EEe-CCEEEEECCC
Confidence            42     222222333333  222 3678899998 666544 333 3578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.09  E-value=0.75  Score=39.03  Aligned_cols=233  Identities=13%  Similarity=0.118  Sum_probs=103.1

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec---CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-Ce
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK---GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-FH  115 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~  115 (389)
                      ...++.|..+ ..+++| ..+ +.+...+.|+.-..+.   .-......+....++   ....++..|.|  |...+ ++
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~i--y~T~DgG~  134 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAI--YRTTDGGK  134 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--E--EEESSTTS
T ss_pred             eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcE--EEeCCCCC
Confidence            3567777653 344444 455 4444445554333321   112233444444444   33334455543  43332 22


Q ss_pred             E-EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          116 E-VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       116 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      . ..........+..+.-++++.+++++.......-||--...- ..........|..|.|.|++. +.+ ....|.|+.
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~  211 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQF  211 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEE
Confidence            2 222334457788888887777666665544556777432211 111113467899999999974 544 447888888


Q ss_pred             EecCCCCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          195 FDTGGDIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       195 ~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      =+....... .+.+.........+..++|. +++. +.+++..|.+ +.....|+.=+.......         -...+.
T Consensus       212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~-~~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~---------~~~n~~  279 (302)
T PF14870_consen  212 SDDPDDGETWSEPIIPIKTNGYGILDLAYR-PPNE-IWAVGGSGTL-LVSTDGGKTWQKDRVGEN---------VPSNLY  279 (302)
T ss_dssp             EE-TTEEEEE---B-TTSS--S-EEEEEES-SSS--EEEEESTT-E-EEESSTTSS-EE-GGGTT---------SSS---
T ss_pred             ccCCCCccccccccCCcccCceeeEEEEec-CCCC-EEEEeCCccE-EEeCCCCccceECccccC---------CCCceE
Confidence            772211000 01111111223347888997 4444 5555566655 445555554433332111         235678


Q ss_pred             eecccCCCCeEEEEEecCCceEEEE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      .+.|....+  -++.| .+|.|.-|
T Consensus       280 ~i~f~~~~~--gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVNPDK--GFVLG-QDGVLLRY  301 (302)
T ss_dssp             EEEEEETTE--EEEE--STTEEEEE
T ss_pred             EEEEcCCCc--eEEEC-CCcEEEEe
Confidence            888876654  23444 78877655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.08  E-value=0.34  Score=34.94  Aligned_cols=117  Identities=10%  Similarity=0.080  Sum_probs=75.9

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCce--------eeeeecCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEc
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--------YSGECKGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      .-.|......|++++..|.|.|++.....        .+..+. -...|++|+-.+   +...+.|+.|+.. .+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence            34566666789999999999999876432        233333 456777776443   3333678887755 6899999


Q ss_pred             cCCeEEEEEEcCCCCeEEEEEeC---CCCeEEEeecCCeEEEEECcCCceeeee
Q 016457          112 RSFHEVWSVTAGSQEIFCFSFGG---STDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      .....+..-.. .+.|.++.+-.   ....++..|.+..|.-||..-.+...+.
T Consensus        81 ~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            87766544333 36777777632   2345666666688888887655544443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.03  E-value=1.3  Score=42.73  Aligned_cols=76  Identities=21%  Similarity=0.138  Sum_probs=52.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCC----------Cceee---eee--------cCCCCcEEEEEEeCCCC-CC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV----------TGQYS---GEC--------KGHSSTVNQISFSGPST-PH   95 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~----------~~~~~---~~~--------~~~~~~v~~i~~~~~~~-~~   95 (389)
                      .-.|..+.++|+|.+||..|..|. .|..+.          .|+..   .++        ..+...|..+.|+|.+. ..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            346888899999999999997664 443332          11111   111        23456799999999751 25


Q ss_pred             EEEEEecCCeEEEEEccCC
Q 016457           96 VLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~  114 (389)
                      .|+.-..|+++|+||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8888889999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.98  E-value=1.6  Score=41.99  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC----------CeE---EEEEE--------cCCCCeEEEEEeCC---C
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHE---VWSVT--------AGSQEIFCFSFGGS---T  136 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~---~~~~~--------~~~~~v~~~~~~~~---~  136 (389)
                      -.|..|..+|+|  .+|+..|..| |.|-.+..          ++.   .+++.        .+...|..+.|+|.   +
T Consensus        85 f~v~~i~~n~~g--~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTG--SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCC--CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            468899999999  6888888776 44444321          111   11221        22467889999986   5


Q ss_pred             CeEEEeecCCeEEEEECcCC
Q 016457          137 DYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~  156 (389)
                      ..|++-.+|+.+++||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            88999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.92  E-value=1.2  Score=39.79  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             CEEEEEecCCeEEEEEccCCe-----EEEEEEcCCCCeEEEEEeC----CCCeEEEeecCCeEEEEECcCC--c------
Q 016457           95 HVLHSCSSDGTIRAWDTRSFH-----EVWSVTAGSQEIFCFSFGG----STDYLLAAGCGSQIQFWDWRNK--K------  157 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~--~------  157 (389)
                      +.|++|+..|.++||+.....     .+...+. +.+|..+....    .....++.=.-..+.+|.+...  .      
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            699999999999999986432     2223332 57888887542    2334555555678888887421  1      


Q ss_pred             -eeeeeeeccc--CCeeEEEEecCC----CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          158 -QVACLEESHV--EDVTQVHFVPNN----QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       158 -~~~~~~~~~~--~~v~~~~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                       .+..+. .|.  .....++.-|-|    +.++.+-+.||.+.+|+-+...     .......---...+.|. +..+.+
T Consensus       117 ~~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~llPgPl~Y~-~~tDsf  189 (418)
T PF14727_consen  117 YQLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFLLPGPLCYC-PRTDSF  189 (418)
T ss_pred             EEEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCCCCcCeEEe-ecCCEE
Confidence             111222 232  233344443332    3588889999999999988321     12222111122345666 455678


Q ss_pred             EEEecCCcEEEEEcC
Q 016457          231 WCLTHIETLSIWDWK  245 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~  245 (389)
                      ++++.+..+.-|...
T Consensus       190 vt~sss~~l~~Yky~  204 (418)
T PF14727_consen  190 VTASSSWTLECYKYQ  204 (418)
T ss_pred             EEecCceeEEEecHH
Confidence            888888888888753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.91  E-value=0.81  Score=37.96  Aligned_cols=164  Identities=16%  Similarity=0.101  Sum_probs=90.0

Q ss_pred             CeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE-c
Q 016457          169 DVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD-W  244 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d-~  244 (389)
                      .+.+.++++++. .++...   ....++++.....      ..... ....+..-.|. +++...+....+....++. .
T Consensus        25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~------~~~~~-~g~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGP------VRPVL-TGGSLTRPSWD-PDGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCc------ceeec-cCCcccccccc-CCCCEEEEEcCCCceEEEEec
Confidence            688999999996 655544   3344555554421      12111 33367777888 5566555555555555553 3


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE-ecCCceEEEEEeccCCcc---ccCCCeEEEecccc
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG-GTGAGTVGYFPVNYGGAA---TIGPPEAVLVGGHT  320 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-g~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~h~  320 (389)
                      .++.....-.....         ....|..+.+||||.++.++. ...++.|++=-+......   .+..++.... ...
T Consensus        96 ~~g~~~~~~v~~~~---------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~  165 (253)
T PF10647_consen   96 ASGTGEPVEVDWPG---------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLL  165 (253)
T ss_pred             CCCcceeEEecccc---------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-ccc
Confidence            33332221111100         112799999999999876555 334577888776644331   1112222221 223


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEEEecCCCe-EEE-EeccC
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR-LCC-WLSDD  360 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~-v~i-W~~~~  360 (389)
                      ..+.++         +|.+++.+++.+...+. +.. ..++.
T Consensus       166 ~~v~~v---------~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  166 SDVTDV---------AWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             Ccceee---------eecCCCEEEEEeCCCCCceeEEEEccC
Confidence            466666         89999988777654333 433 44443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.89  E-value=1.1  Score=39.47  Aligned_cols=182  Identities=13%  Similarity=0.060  Sum_probs=91.0

Q ss_pred             cCCCCeEEEEecCc------eeeeeec--------CcceEEEeecCCCCeEEEEecC------CeEEEEeCCCceeeeee
Q 016457           17 CDNVNSIKRFGLKN------SIQTNFG--------DDYVFEIVPKNDWSLMAVSLST------NVVKLYSPVTGQYSGEC   76 (389)
Q Consensus        17 ~~~~~~i~~w~~~~------~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~   76 (389)
                      +-..+.|.+.|+..      ..+++..        -..-..+-.-|+|+.++++-.|      |-+.++|-++.+....+
T Consensus        94 gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W  173 (461)
T PF05694_consen   94 GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW  173 (461)
T ss_dssp             BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-
T ss_pred             eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee
Confidence            33557788888752      2333331        1222334445788888776432      46888888877777666


Q ss_pred             cCC---CCcEEEEEEeCCCCCCEEEEEec--------------------CCeEEEEEccCCeEEEEEEcCCC--CeEEEE
Q 016457           77 KGH---SSTVNQISFSGPSTPHVLHSCSS--------------------DGTIRAWDTRSFHEVWSVTAGSQ--EIFCFS  131 (389)
Q Consensus        77 ~~~---~~~v~~i~~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~  131 (389)
                      ...   ..--..+-|.|..  +.++|...                    ..++.+||+.+.+.++++.....  ....+.
T Consensus       174 e~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvR  251 (461)
T PF05694_consen  174 EKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVR  251 (461)
T ss_dssp             -SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEE
T ss_pred             ccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEE
Confidence            542   2234667778876  67777543                    45799999999999999987643  355677


Q ss_pred             Ee--CCCCeEEEeec-CCeEEEEEC-cCCc----eeeeeee---------c-------ccCCeeEEEEecCCCCeEEEEe
Q 016457          132 FG--GSTDYLLAAGC-GSQIQFWDW-RNKK----QVACLEE---------S-------HVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       132 ~~--~~~~~l~~~~~-d~~i~iwd~-~~~~----~~~~~~~---------~-------~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      |.  |...+=++++. ..+|..|-- ..++    .+.++..         .       -..-|+.|.++.+++.+.++.-
T Consensus       252 flH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W  331 (461)
T PF05694_consen  252 FLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW  331 (461)
T ss_dssp             E-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET
T ss_pred             ecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc
Confidence            64  44455444443 566665543 3332    2222220         0       0245799999999985566666


Q ss_pred             CCCcEEEEecCCC
Q 016457          188 VDGLICTFDTGGD  200 (389)
Q Consensus       188 ~d~~i~i~d~~~~  200 (389)
                      ..|.|+.||+...
T Consensus       332 ~~GdvrqYDISDP  344 (461)
T PF05694_consen  332 LHGDVRQYDISDP  344 (461)
T ss_dssp             TTTEEEEEE-SST
T ss_pred             cCCcEEEEecCCC
Confidence            7999999999843

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=95.84  E-value=1.1  Score=41.18  Aligned_cols=182  Identities=7%  Similarity=-0.061  Sum_probs=83.2

Q ss_pred             CCCeEEEEecCC-----eEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC--CeEEEEEccCCeEEE-
Q 016457           49 DWSLMAVSLSTN-----VVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD--GTIRAWDTRSFHEVW-  118 (389)
Q Consensus        49 ~~~~l~~~~~d~-----~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~-  118 (389)
                      ++.++++|+.++     .+..||..+++-.  ..+....... +++.. ++  .+.+.||.+  .++..||..+++-.. 
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~-~~--~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA-NN--KLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE-CC--EEEEECCcCCCCceEEEECCCCeEEEC
Confidence            455667777542     5777887765422  2222111112 22222 45  577777754  357788876554322 


Q ss_pred             -EEEcCCCCeEEEEEeCCCCeEEEeecC---CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          119 -SVTAGSQEIFCFSFGGSTDYLLAAGCG---SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       119 -~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                       .+....... +++.. ++...+.||.+   ..+..||.++.+-...-.......-.+++ .-++. +.+.|   |.+.+
T Consensus       347 ~~l~~~r~~~-~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~-IYv~G---G~~e~  419 (480)
T PHA02790        347 PSLLKPRCNP-AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRR-LFLVG---RNAEF  419 (480)
T ss_pred             CCCCCCCccc-EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCE-EEEEC---CceEE
Confidence             121111112 22222 44445555543   35778888765432211101111111222 22342 55555   35778


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCC
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKD  246 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~  246 (389)
                      ||..++.  ...+..+. ....-.+++..  ++++.++|+.+     ..+..||..+
T Consensus       420 ydp~~~~--W~~~~~m~-~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        420 YCESSNT--WTLIDDPI-YPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             ecCCCCc--EeEcCCCC-CCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence            8887542  22222211 11112233333  45677777754     2455555543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.81  E-value=0.93  Score=37.83  Aligned_cols=239  Identities=16%  Similarity=0.175  Sum_probs=130.9

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCC------Cc-eeeeeecC-----CCCcEEEEEEeCCCC----------CCEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPV------TG-QYSGECKG-----HSSTVNQISFSGPST----------PHVLH   98 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~----------~~~l~   98 (389)
                      -+.|+++|.+.+-++....+...+||..      .. .++-.+..     .....+.+.|+....          ...++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4578999988666666667899999986      12 22333331     224577777774321          12467


Q ss_pred             EEecCCeEEEEEccCCeE-----EEEEEcC-CCC-eEEEEEeC--CCCeEEEeec-CCeEEEEECcCCcee--eeeee--
Q 016457           99 SCSSDGTIRAWDTRSFHE-----VWSVTAG-SQE-IFCFSFGG--STDYLLAAGC-GSQIQFWDWRNKKQV--ACLEE--  164 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~~-v~~~~~~~--~~~~l~~~~~-d~~i~iwd~~~~~~~--~~~~~--  164 (389)
                      .+++||+|.-|...-+..     ...+... ... -..+++..  .+.+|+++-. .++|.+||-.-.+..  ..+.+  
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            789999999998542211     1222211 233 34555543  3567777766 799999985422211  01110  


Q ss_pred             --c-----------ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---CceeeEEEec----
Q 016457          165 --S-----------HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG---TSVGKVGFFG----  224 (389)
Q Consensus       165 --~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~----  224 (389)
                        .           ..-.|+-..-.++. +.=+.|..-|.|-+||+...     .++++ .+.   ...+.|+..|    
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-----l~~r~-as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-----LLRRV-ASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-----EEEEe-ccCCcccCCceeeeChhhhC
Confidence              0           00011111112222 12233344578999999843     23333 222   2345565543    


Q ss_pred             -CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC-----CCeEEEEEecCC
Q 016457          225 -ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE-----GENLWVIGGTGA  292 (389)
Q Consensus       225 -~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~g~~d  292 (389)
                       ..+.+|+---.||+|..||..+++.+-.+.......-      -...++.+.|-..     .+.+|+++|-.|
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi------~i~GLWgL~fGng~~~~~~ntLyFaAGp~d  325 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV------KVDGLWSLTFGNGVSGGSANYLYFTAGPDD  325 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE------EecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence             3466777777899999999999988777664321100      1245666777652     234555555443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.71  E-value=0.27  Score=43.58  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE-EEEeCCCC---------------CC-EEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ-ISFSGPST---------------PH-VLHSC  100 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~-i~~~~~~~---------------~~-~l~s~  100 (389)
                      ...+.+++.+|++++.|+...-|.|.|+|+.++..++.++|-.+.-.. +.....+.               .. +++-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            566889999999998888877899999999999888888775543111 11111110               01 33446


Q ss_pred             ecCCeEEEEEccCCeEEEEEEcC
Q 016457          101 SSDGTIRAWDTRSFHEVWSVTAG  123 (389)
Q Consensus       101 ~~dg~i~iwd~~~~~~~~~~~~~  123 (389)
                      -.-|.|.||.++++..+..+...
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEeC
Confidence            67889999999999888877754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.71  E-value=0.0012  Score=57.31  Aligned_cols=149  Identities=14%  Similarity=0.197  Sum_probs=102.4

Q ss_pred             EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      ....|-|.+.-++.++.+..+..||- .++...... .+....+++|..++. ..++.+-..+.+.+||+.+.... .+.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegd-vlavlAek~~piylwd~n~eytq-qLE  113 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGD-VLAVLAEKTGPIYLWDVNSEYTQ-QLE  113 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccc-hhhhhhhcCCCeeechhhhhhHH-HHh
Confidence            34557777767888988999999994 355555544 345566788888774 45666777889999999754321 222


Q ss_pred             c-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          122 A-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       122 ~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      . ....-.-+.|++....++.+-..|.+.+++..+.+.+...- .|...++++++.+.+  +.+.++.|..+.+-..
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd--~vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED--YVILCDCDNTLSVTTQ  187 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc--eeeecCcHHHHHHhhh
Confidence            1 12222226788777777777778999999988766655553 488999999999986  5666766665544433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.64  E-value=2.4  Score=41.30  Aligned_cols=208  Identities=10%  Similarity=0.069  Sum_probs=111.6

Q ss_pred             CCeEEEeecCCeEEEEECcCCceeeeeeecccC--------CeeEEEEec----------------CCCCeEEEEeCCCc
Q 016457          136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE--------DVTQVHFVP----------------NNQNKVVSASVDGL  191 (389)
Q Consensus       136 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~~l~~~~~d~~  191 (389)
                      ++.+++++.++.|.-.|.++++.+.++. ....        ....+++..                .+ ..++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~-~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA-RRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccC-CEEEEecCCCe
Confidence            6788888888999999999999988876 2111        012233321                22 27888889999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCc----------------eee-EEEecCCCcEEEEEec----------CCcEEEEEc
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTS----------------VGK-VGFFGETNKHLWCLTH----------IETLSIWDW  244 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~----------------i~~-~~~~~~~~~~l~~~~~----------d~~i~i~d~  244 (389)
                      +.-.|.++++..    -.+ ..+..                +++ -...  + ..+++++.          +|.|+-+|.
T Consensus       272 LiALDA~TGk~~----W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~--~-g~VIvG~~v~d~~~~~~~~G~I~A~Da  343 (764)
T TIGR03074       272 LIALDADTGKLC----EDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVA--G-TTVVIGGRVADNYSTDEPSGVIRAFDV  343 (764)
T ss_pred             EEEEECCCCCEE----EEe-cCCCceeeecccCcCCCcccccccCCEEE--C-CEEEEEecccccccccCCCcEEEEEEC
Confidence            999999877521    111 11100                111 1111  2 25555543          588999999


Q ss_pred             CCCceeEEeecccccc------cCCccCCCCCceeeecccCCCCeEEEEEec----------------CCceEEEEEecc
Q 016457          245 KDGQNVASFENARSLA------SDSWTLDDVDYFVDCHYPGEGENLWVIGGT----------------GAGTVGYFPVNY  302 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~----------------~dg~i~i~~~~~  302 (389)
                      ++|+.+-.+.......      ...|..+....=...++.+....+|+-+|.                ..+.|.-.|.++
T Consensus       344 ~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T  423 (764)
T TIGR03074       344 NTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT  423 (764)
T ss_pred             CCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence            9999987776321111      111111111111234455554433333321                124566667777


Q ss_pred             CCccccCCCeEEEecccceeeeec-cCCCcccCCCCCC-Cce---eEEEecCCCeEEEEeccCC
Q 016457          303 GGAATIGPPEAVLVGGHTAVVRSV-LPMPSVQGRPAQS-HGI---FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~s~-~~~---~l~s~~~dg~v~iW~~~~~  361 (389)
                      ++.      .-.+...| ..+.+. .+....+ ..+.. +|+   .++.++.+|.+.+.|..++
T Consensus       424 Gk~------~W~~Q~~~-hD~WD~D~~~~p~L-~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       424 GKE------RWVFQTVH-HDLWDMDVPAQPSL-VDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             Cce------EEEecccC-CccccccccCCceE-EeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            765      22222111 112222 1222222 02222 553   7899999999999999877

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.64  E-value=1.8  Score=41.17  Aligned_cols=144  Identities=17%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCcee------eeeec----------------CCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQY------SGECK----------------GHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~------~~~~~----------------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      +.++++|. .+.|.||++..-..      ...+.                ...-.|+.|....-+..+.|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56777766 78999998753211      11110                011235555554434347999999999999


Q ss_pred             EEEccC-------C-------------eEEEEEEcCCCCeEEEEEe--CCCCeEEEeecCCeEEEEECcCC--cee--ee
Q 016457          108 AWDTRS-------F-------------HEVWSVTAGSQEIFCFSFG--GSTDYLLAAGCGSQIQFWDWRNK--KQV--AC  161 (389)
Q Consensus       108 iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~--~~~--~~  161 (389)
                      +|.+.+       .             ++...++. ...+++++++  .....+++++....|.||-....  +..  ..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997631       1             01222332 4689999997  55555666666677777654432  111  12


Q ss_pred             eeecccCCeeEEEEecCC--CC---eEEEEeCCCcEEEEec
Q 016457          162 LEESHVEDVTQVHFVPNN--QN---KVVSASVDGLICTFDT  197 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~--~~---~l~~~~~d~~i~i~d~  197 (389)
                      .  .+...|-+|.|.++.  +.   .+++++-.|.+.+|++
T Consensus       207 ~--~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 H--QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             c--ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            2  356678899998765  22   6788889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.61  E-value=1.6  Score=39.01  Aligned_cols=145  Identities=10%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             CCCeEEEEecCCeEEEEeCCCce-----eeeeecCCCCcEEEEEEeC---CCCCCEEEEEecCCeEEEEEccC--Ce---
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSG---PSTPHVLHSCSSDGTIRAWDTRS--FH---  115 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~dg~i~iwd~~~--~~---  115 (389)
                      +...|++|+..|.++||+...+.     .+...+ -..+|..++.-.   ......||. -.-..+.+|.+..  +.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34699999999999999986433     111222 456788877542   222124444 5566788888731  11   


Q ss_pred             ----EEEEEEcC--CCCeEEEEEeCC-----CCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          116 ----EVWSVTAG--SQEIFCFSFGGS-----TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       116 ----~~~~~~~~--~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                          .+..+..|  ......+++-|-     ...+.+-+.||.+.+|+-+.......+.  .---.-.+.+.+... .|+
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tD-sfv  190 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTD-SFV  190 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCC-EEE
Confidence                22233333  334444554432     2456666779999999965443333332  223344578888774 899


Q ss_pred             EEeCCCcEEEEecC
Q 016457          185 SASVDGLICTFDTG  198 (389)
Q Consensus       185 ~~~~d~~i~i~d~~  198 (389)
                      +++.+..+..|...
T Consensus       191 t~sss~~l~~Yky~  204 (418)
T PF14727_consen  191 TASSSWTLECYKYQ  204 (418)
T ss_pred             EecCceeEEEecHH
Confidence            99988889888764

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.52  E-value=1.7  Score=39.60  Aligned_cols=274  Identities=12%  Similarity=0.052  Sum_probs=138.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|.++.++-.| .+.+|+.+| +..||..+++.++.-.... ..|..+.-.-.+   .|..|+.+| |.+.+.+..+.
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg---~LWVGTdqG-v~~~e~~G~~~  237 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG---RLWVGTDQG-VYLQEAEGWRA  237 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC---cEEEEeccc-eEEEchhhccc
Confidence            6778888888887 567788777 7788888888776654433 677777666555   788888887 77777664222


Q ss_pred             EEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-ccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          117 VWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-HVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       117 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      ..-.. .....|..+.-. ..+.+..++..|..+.--.+.+-.+...+.. ..+.|.++..+.+|  -+-+++.++.+++
T Consensus       238 sn~~~~lp~~~I~ll~qD-~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG--sLWv~t~~giv~~  314 (671)
T COG3292         238 SNWGPMLPSGNILLLVQD-AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG--SLWVGTYGGIVRY  314 (671)
T ss_pred             cccCCCCcchheeeeecc-cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCC--CEeeeccCceEEE
Confidence            11111 113445444443 3456666666555433222222111111111 12456677777777  4777777776665


Q ss_pred             EecCCCCCCCccceeeeccCCce-eeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          195 FDTGGDINDDDLLESVINVGTSV-GKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      -+-.     ......+...++.+ ...+..|+ ....+.-...-|.+.+-+-.++..+......+           ...|
T Consensus       315 ~~a~-----w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-----------g~ni  378 (671)
T COG3292         315 LTAD-----WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-----------GMNI  378 (671)
T ss_pred             ecch-----hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-----------cccc
Confidence            4332     11111121111111 11111110 01112222222344444555565555533322           1456


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCe
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR  352 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  352 (389)
                      +.+++..+ .+++  .|+...-+..|+-.+     .+..+........++|..+         .-.|+++ |.-|+.+|.
T Consensus       379 t~~~~d~~-g~lW--lgs~q~GLsrl~n~n-----~~avlde~agl~ss~V~ai---------ved~dns-LWIGTs~Gl  440 (671)
T COG3292         379 TTTLEDSR-GRLW--LGSMQNGLSRLDNKN-----EWAVLDEDAGLPSSEVSAI---------VEDPDNS-LWIGTSGGL  440 (671)
T ss_pred             chhhhccC-CcEE--EEecccchhhhccCC-----cccccccccCCcccceeee---------eecCCCC-EEEeccCCe
Confidence            66677764 4344  444443355555554     1122233322234566666         4556666 566776776


Q ss_pred             EE
Q 016457          353 LC  354 (389)
Q Consensus       353 v~  354 (389)
                      ++
T Consensus       441 vk  442 (671)
T COG3292         441 VK  442 (671)
T ss_pred             Ee
Confidence            54

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.45  E-value=0.46  Score=42.36  Aligned_cols=144  Identities=13%  Similarity=0.088  Sum_probs=89.9

Q ss_pred             CCCeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC-----CCEEEEEecCCeEEEEEcc-CCeEEEEEE
Q 016457           49 DWSLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST-----PHVLHSCSSDGTIRAWDTR-SFHEVWSVT  121 (389)
Q Consensus        49 ~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~~~l~s~~~dg~i~iwd~~-~~~~~~~~~  121 (389)
                      |..+|+ .|+....++-.|++.|+.+..+..|..-  -+.|.|...     +..-+.|-.+..|.-.|.+ .|..+...+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            333433 4444567777889999999999877665  467777541     0123334445445445655 333333222


Q ss_pred             cC----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          122 AG----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       122 ~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      ..    +....|..-. .++++++++..|.|++||-- +....+..++.+..|..+....+|. ++++.+ ...+.+-|+
T Consensus       556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk-~ilaTC-k~yllL~d~  631 (776)
T COG5167         556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGK-HILATC-KNYLLLTDV  631 (776)
T ss_pred             ehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCc-EEEEee-cceEEEEec
Confidence            21    2333444433 67899999999999999943 4333333337788999999999997 554444 567888888


Q ss_pred             C
Q 016457          198 G  198 (389)
Q Consensus       198 ~  198 (389)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            7

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.37  E-value=0.083  Score=29.46  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=26.6

Q ss_pred             CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCC
Q 016457          168 EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       168 ~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~  199 (389)
                      +.+.++.|+|...  .+|+.+-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999997653  4888888889999999994

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=95.34  E-value=2  Score=40.23  Aligned_cols=145  Identities=10%  Similarity=-0.036  Sum_probs=66.8

Q ss_pred             CEEEEEecCC------eEEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceeee
Q 016457           95 HVLHSCSSDG------TIRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVAC  161 (389)
Q Consensus        95 ~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~  161 (389)
                      .+++.||.++      .+..||..+.+....  +.........+.+  ++..++.||.+     ..+..||..+++-...
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            4677776543      467788776654321  1111112222222  45555556653     3577888876543221


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCC------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVD------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      -...+...-.+++.. ++ .+++.|+.+      ..+..||..+..  ...+.... ....-.+++.  .++.+++.|+.
T Consensus       374 ~~lp~~r~~~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p-~~r~~~~~~~--~~~~iyv~GG~  446 (534)
T PHA03098        374 PPLIFPRYNPCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLP-ISHYGGCAIY--HDGKIYVIGGI  446 (534)
T ss_pred             CCcCcCCccceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCC-ccccCceEEE--ECCEEEEECCc
Confidence            110111111222222 34 377777632      357888987542  11111111 0111112222  24556666654


Q ss_pred             CC--------cEEEEEcCCCc
Q 016457          236 IE--------TLSIWDWKDGQ  248 (389)
Q Consensus       236 d~--------~i~i~d~~~~~  248 (389)
                      +.        .+.+||..+.+
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             cCCCCCcccceEEEecCCCCc
Confidence            32        37788877654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.28  E-value=0.002  Score=55.99  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=97.3

Q ss_pred             EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457          128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (389)
                      ....|-|.+..++.++.+..+..|| +.++.+....  .+.....++|..+++..++.+...+.+.+||+.+..  ...+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQL  112 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhh-hhcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHH
Confidence            3456777888899999999999999 4455555554  455667788988887667777888999999998532  1111


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ..-..+...  -+.|+ +....++.+...+.+.|++..+.+.+.....            |...++.+++.+.+   +.+
T Consensus       113 E~gg~~s~s--ll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gk------------h~RRgtq~av~lEd---~vi  174 (615)
T KOG2247|consen  113 ESGGTSSKS--LLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGK------------HQRRGTQIAVTLED---YVI  174 (615)
T ss_pred             hccCcchHH--HHhhc-cCCccccccccccceEEEeccchhhhhhhcc------------cccceeEEEecccc---eee
Confidence            111111112  25677 6677788888889999999876655444332            56778888888876   445


Q ss_pred             EecCCc
Q 016457          288 GGTGAG  293 (389)
Q Consensus       288 ~g~~dg  293 (389)
                      .++.|.
T Consensus       175 l~dcd~  180 (615)
T KOG2247|consen  175 LCDCDN  180 (615)
T ss_pred             ecCcHH
Confidence            555554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.24  E-value=0.08  Score=29.51  Aligned_cols=31  Identities=13%  Similarity=-0.053  Sum_probs=26.3

Q ss_pred             cceEEEeecCCC---CeEEEEecCCeEEEEeCCC
Q 016457           39 DYVFEIVPKNDW---SLMAVSLSTNVVKLYSPVT   69 (389)
Q Consensus        39 ~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~   69 (389)
                      ++|.++.|+|..   .+|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999854   5888888899999999885

It contains a characteristic DLL sequence motif.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.09  E-value=2.1  Score=37.29  Aligned_cols=152  Identities=11%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEE-EeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKL-YSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-w~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      ...++++.+.|++.+++++. .|.+.. ++ ..++.-... ..-...++++.+.+++  ..++. +..|.+++=..+.+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCEEEEccCCCCC
Confidence            55788999999987776665 565543 22 222222222 2345678999999887  45554 456766532233333


Q ss_pred             EEEEEEcC----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          116 EVWSVTAG----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       116 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      .-.....+    ...+..+.+.|++ .+++++.+|.|.. ....++.-....  ..-....+.+.|..++. . +..+..
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~-~~~G~~  322 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-G-FVLGQR  322 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc-e-EEECCC
Confidence            22211211    2457888998654 5677777776653 334444333322  01223577788876653 4 445668


Q ss_pred             CcEEEEecC
Q 016457          190 GLICTFDTG  198 (389)
Q Consensus       190 ~~i~i~d~~  198 (389)
                      |.|..|+-.
T Consensus       323 G~il~~~~~  331 (334)
T PRK13684        323 GVLLRYVGS  331 (334)
T ss_pred             ceEEEecCC
Confidence            888777643

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.99  E-value=1.4  Score=34.84  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CeEEEEecCCeEEEEeCC--CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC------eEEEE-EccC----CeEE
Q 016457           51 SLMAVSLSTNVVKLYSPV--TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG------TIRAW-DTRS----FHEV  117 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg------~i~iw-d~~~----~~~~  117 (389)
                      +.|..+...+.|.+|++.  ..+.+..+.. -+.|..+.++..|  ++|+|--.+.      .+|+| |.+.    .+++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G--DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG--DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc--ceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            455554667889999988  3356666664 4789999999998  7999964332      46665 2221    1111


Q ss_pred             E-EEEc--------------------C-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457          118 W-SVTA--------------------G-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus       118 ~-~~~~--------------------~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  156 (389)
                      . .+-+                    . ..++.+++..|..+.|++++. +.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            1 1112                    1 356788998888888888776 78889987644

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=2.5  Score=37.43  Aligned_cols=158  Identities=7%  Similarity=0.003  Sum_probs=85.6

Q ss_pred             CeEEEEEeCCCCeEEEeecCCeEEEEECcCC--ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457          126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK--KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND  203 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (389)
                      .-+.+-|...++.+++.. .|.+.-|-..-.  ...-.+.....++|.++.|++|.+ .+++--.+..|.+++.......
T Consensus        24 esngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   24 ESNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence            344566663344444443 355555554422  223333334567999999999996 8999999999999998643222


Q ss_pred             CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457          204 DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (389)
                      .............|....|. .+ .-++..+..| +-+|-.... +.++....            |...|.=..|.++.+
T Consensus       102 l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~pekrslRlVks------------~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS------------HNLNVNWYMYCPETA  166 (657)
T ss_pred             hHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEchhhhhhhhhhh------------cccCccEEEEccccc
Confidence            22222333334558888887 44 3455554444 445543322 22222222            335566666777665


Q ss_pred             eEEEEEecCCceEEEEEe
Q 016457          283 NLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       283 ~~~l~~g~~dg~i~i~~~  300 (389)
                      -.+|+++-....+.=+.+
T Consensus       167 v~LL~t~~~~n~lnpf~~  184 (657)
T KOG2377|consen  167 VILLSTTVLENVLNPFHF  184 (657)
T ss_pred             eEeeeccccccccccEEE
Confidence            433444433433333333

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.63  E-value=2.8  Score=36.49  Aligned_cols=103  Identities=16%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE---EEEEE----cCCCCeEEEEEeCC---CCeEEEeecC------
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVT----AGSQEIFCFSFGGS---TDYLLAAGCG------  145 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~l~~~~~d------  145 (389)
                      .-++|+|.|++  .+++ +...|.|++++ ..+..   +..+.    ........++++|+   +..+++....      
T Consensus         3 ~P~~~a~~pdG--~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPDG--RLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETTS--CEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCCC--cEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            35789999998  4555 56799999999 44443   22221    12567899999983   4555555441      


Q ss_pred             ---CeEEEEECcCC-------ceee-eeee--cccCCeeEEEEecCCCCeEEEEeCC
Q 016457          146 ---SQIQFWDWRNK-------KQVA-CLEE--SHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       146 ---~~i~iwd~~~~-------~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                         ..|.-|....+       +.+. .+..  .....-..|+|.|++. ++++.+..
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~  134 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDG  134 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-T
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCC
Confidence               23443443322       1111 1121  1223456799999995 66666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.61  E-value=3  Score=36.92  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=111.4

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCC--CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC-C
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGH--SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS-Q  125 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~  125 (389)
                      ++ .+.++..+|.|.-.|.++++.+.....-  ...+..-.+..++   .++.++.++.+..+|..+++.+....... .
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G---~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG---KIYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC---eEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            44 5566677888999999988866543322  1233333333366   68888999999999998999999888765 1


Q ss_pred             CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc--cCCeeEEEEecCCCCeEEEEeC--CCcEEEEecCCCC
Q 016457          126 EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH--VEDVTQVHFVPNNQNKVVSASV--DGLICTFDTGGDI  201 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~  201 (389)
                      .+..-..- .+..++..+.++.+...|..+++.+.......  ...+..-....++  .++.+..  ++.+.-+|..++.
T Consensus       144 ~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         144 YYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG--TVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             EEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc--eEEEecCCCcceEEEEEccCCc
Confidence            12222222 34455555578999999998888877654111  1111111112222  4555555  5566667776553


Q ss_pred             CCCcc-ceeeeccC-----CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          202 NDDDL-LESVINVG-----TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       202 ~~~~~-~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      ..... ........     ..+..-... -+ .-++.++.++.+...|..+++.+-.+..
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVY-VD-GGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEE-EC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            21110 00011110     011110111 11 1346677778888888888888877664

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=3.6  Score=41.49  Aligned_cols=151  Identities=13%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             EeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC------CEEEEEecCCeEEEEEccCCe--
Q 016457           44 IVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP------HVLHSCSSDGTIRAWDTRSFH--  115 (389)
Q Consensus        44 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~--  115 (389)
                      |-+-|.-.+... +.|+.+.+|+.+++.....+.+-...|..+..-....+      ++++....--.|.++-+.-.+  
T Consensus        84 mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~  162 (1311)
T KOG1900|consen   84 MGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT  162 (1311)
T ss_pred             eccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence            334444334443 34889999999998888888877777777764321110      233333333346665443111  


Q ss_pred             --E-----EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc----CC---c-e----------------eeeeee
Q 016457          116 --E-----VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR----NK---K-Q----------------VACLEE  164 (389)
Q Consensus       116 --~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~---~-~----------------~~~~~~  164 (389)
                        .     ..++......|+|+... ++++++.+|.||.  +|.+.    .+   + +                +..+..
T Consensus       163 ~~~~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  163 GELSIFNTSFKISVDGVSVNCITYT-ENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             CcccccccceeeecCCceEEEEEec-cCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence              0     12233335678899955 7778888888884  44331    11   1 0                111112


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      .+.++|..|+..... +++.+-+..|.|.+||+..
T Consensus       240 ~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence            467799999999887 4999999999999999985

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.38  E-value=0.12  Score=48.94  Aligned_cols=137  Identities=11%  Similarity=0.088  Sum_probs=83.2

Q ss_pred             CCeEEEEecCc--------eeeeee-c-CcceEEEeecC---CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           20 VNSIKRFGLKN--------SIQTNF-G-DDYVFEIVPKN---DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        20 ~~~i~~w~~~~--------~~~~~~-~-~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      -|.+-+|++..        ...+.. . ...+.-+.|+|   ..-++..+..++.|++.+.++... ..+.+|...+..+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence            36677888641        111121 1 44445555554   557888888899999988765432 4456677766655


Q ss_pred             E-----------EeCCCCCCEEEEEecCCeEEEEEcc-----CCeEEEEEEcCC-CCeEEEEEeCCCC---------eEE
Q 016457           87 S-----------FSGPSTPHVLHSCSSDGTIRAWDTR-----SFHEVWSVTAGS-QEIFCFSFGGSTD---------YLL  140 (389)
Q Consensus        87 ~-----------~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~  140 (389)
                      +           .+|||  ..++.++.||.+++|.+.     ...+++..+.|. .+-.|.-|+.+..         .++
T Consensus       231 a~~~~g~~~l~~lSpDG--tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I  308 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDG--TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI  308 (1283)
T ss_pred             HHHhhchhhheeeCCCC--cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence            4           57788  789999999998888764     223455556663 4444443442221         233


Q ss_pred             Eeec-CCeEEEEECcCCcee
Q 016457          141 AAGC-GSQIQFWDWRNKKQV  159 (389)
Q Consensus       141 ~~~~-d~~i~iwd~~~~~~~  159 (389)
                      +++. +..+++|.....+++
T Consensus       309 tttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  309 TTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecccCCcceeEeeccchhhh
Confidence            3443 567888887666555

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.22  E-value=0.035  Score=52.41  Aligned_cols=154  Identities=13%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC--CCceeEEeecccccccCCccC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK--DGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      .+.+++-+..+...   ...-..+..+.+-.+.|-.-+...+.  -.-|.+.+|++.  .|+....+.-...-..++   
T Consensus       110 ~~~vrvaN~~~sm~---~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs---  181 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMR---HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS---  181 (1283)
T ss_pred             hhhhhhccCcchhH---HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC---
Confidence            44566665553211   11122344566666666422222222  233577788865  343332222111000000   


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc-CCCc-ccCCCCCCCceeE
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL-PMPS-VQGRPAQSHGIFG  344 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~~~~~~s~~~~~l  344 (389)
                       ....|.-+-|.++.-  ++..+-.++.|++..+.+...        .+..+|...+.++. ...+ ......||||+.+
T Consensus       182 -~~~~V~wcp~~~~~~--~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~  250 (1283)
T KOG1916|consen  182 -DPQLVSWCPIAVNKV--YICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVF  250 (1283)
T ss_pred             -Ccceeeecccccccc--eeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence             113344444555443  888888899999887776432        33357999888883 3322 2233589999999


Q ss_pred             EEecCCCeEEEEeccCC
Q 016457          345 WTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~~  361 (389)
                      +.+..||.+++|.+--.
T Consensus       251 a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             EEeecCCccceeeeeee
Confidence            99999999999998754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.13  E-value=0.62  Score=37.58  Aligned_cols=70  Identities=19%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee------ee-------cccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL------EE-------SHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       125 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      .++..+..  .+.++++.+.+|.+++||+.+++.+..-      -.       .....|..+.++.+|. -+++-+ +|.
T Consensus        13 s~~~~l~~--~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~   88 (219)
T PF07569_consen   13 SPVSFLEC--NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGD   88 (219)
T ss_pred             CceEEEEe--CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCC
Confidence            45555554  6888999999999999999987754332      11       2446688888888874 555554 678


Q ss_pred             EEEEecC
Q 016457          192 ICTFDTG  198 (389)
Q Consensus       192 i~i~d~~  198 (389)
                      .+.|+..
T Consensus        89 ~y~y~~~   95 (219)
T PF07569_consen   89 SYSYSPD   95 (219)
T ss_pred             EEEeccc
Confidence            8999887

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=94.05  E-value=6.2  Score=38.26  Aligned_cols=115  Identities=9%  Similarity=-0.030  Sum_probs=65.3

Q ss_pred             CCeEEEEEeCCCCeEEEeec-C----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-----CcEEE
Q 016457          125 QEIFCFSFGGSTDYLLAAGC-G----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-----GLICT  194 (389)
Q Consensus       125 ~~v~~~~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i  194 (389)
                      -.+..+.++|+++.++.+.. +    ..|++.|+.++..+.... ....  ..++|.+++..++++...+     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999888777654 2    368899998886443322 1212  4599999986444544322     35777


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEc
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDW  244 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~  244 (389)
                      +++.++......+..  .......-..+.+.++.+++..+..   +.+.+++.
T Consensus       204 h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            777765322333322  1222222122333466665554443   47888884

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.89  Score=40.02  Aligned_cols=115  Identities=12%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee----eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY----SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      .++|.++.|++|++.||+--.+.+|.+++....+.    ..+.+..+..|....|..+.   -+|-....| +-+|....
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST---EIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-eEEEEEch
Confidence            67999999999999999999999999999843332    23334455679999998664   566665555 67776553


Q ss_pred             -CeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCC
Q 016457          114 -FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNK  156 (389)
Q Consensus       114 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~  156 (389)
                       .+.++..+.++..|.-..|.++...++.++.  .+.+.=+.++++
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence             3445566777788888888877666555544  344444444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.91  E-value=3.9  Score=36.21  Aligned_cols=112  Identities=11%  Similarity=0.042  Sum_probs=54.5

Q ss_pred             CCeeEEEEecCCCCeEEEEe-----------CCC-cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457          168 EDVTQVHFVPNNQNKVVSAS-----------VDG-LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~-----------~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      .....|+|.++|. ++++-.           ..+ .|.+++-..+.........+...-.....+++. +++  |+++..
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G--lyV~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG--VYVATP   89 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC--EEEeCC
Confidence            4567889999985 655542           223 677776543211111222232233355788887 566  444444


Q ss_pred             CCcEEEE-EcCCC-----ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          236 IETLSIW-DWKDG-----QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       236 d~~i~i~-d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                      . .|..| |....     +....+...... .    ..+......+.|.|||. +|+..|+
T Consensus        90 ~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~-~----~~~~~~~~~l~~gpDG~-LYv~~G~  143 (367)
T TIGR02604        90 P-DILFLRDKDGDDKADGEREVLLSGFGGQ-I----NNHHHSLNSLAWGPDGW-LYFNHGN  143 (367)
T ss_pred             C-eEEEEeCCCCCCCCCCccEEEEEccCCC-C----CcccccccCceECCCCC-EEEeccc
Confidence            4 34444 44211     111112211100 0    00224577899999985 4555553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.87  E-value=5.4  Score=40.29  Aligned_cols=230  Identities=13%  Similarity=0.097  Sum_probs=105.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ......++|+|...++|.|+..|.|++|-...-+......... ..+..+.+-...  ........+..+.+|.......
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~--s~~~~l~~~~~~~~~~~~~~~~  112 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGI--SRNLVLSDDDSLHLWSIKIKTG  112 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecc--cccceeecccceeeecccccce
Confidence            4566788999999999999999999999754323222211111 112222222211  1233333444555565432211


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeEE-EEec-CCCCeEEEEeCCCcEE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQV-HFVP-NNQNKVVSASVDGLIC  193 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~-~~~~-~~~~~l~~~~~d~~i~  193 (389)
                      +    .....+++....+.-.. +.+ ..+.+++||..-... ..+. ..-....... ...+ .-.........+  -.
T Consensus       113 ~----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~  183 (993)
T KOG1983|consen  113 V----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQL-SDLKYAGTESSNFVPYESLSPTLSIEGLVIDLD--TV  183 (993)
T ss_pred             e----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhh-ccceeccccccccceeeeeccceeeeccccccc--cc
Confidence            1    12344555544333333 444 678888888652211 1111 0000000000 0000 000000000001  01


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      .+-+.      .....+..+..++.+..+..++  -++.+...+.+.+|+.........+..                 .
T Consensus       184 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  238 (993)
T KOG1983|consen  184 LISLP------DAYLGLSLIEYESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAYLP-----------------N  238 (993)
T ss_pred             eeecc------cccccccccccccceeeeecCC--Ccceeeeeeeeeehhcccccchhhccc-----------------c
Confidence            11111      0112233344555555554232  234444455666666443333333322                 1


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .....+++.  .++++-.||.+.+||+..++.
T Consensus       239 ~~~~~~~~~--~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  239 GQLESRDGS--HFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccCccCCc--eEEEEEecCCEEeeecCCCce
Confidence            111267777  889999999999999998755

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.78  E-value=1.9  Score=31.28  Aligned_cols=107  Identities=18%  Similarity=0.223  Sum_probs=68.7

Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCC--------eEEEEEEcCCCCeEEEEEeC----CCCeEEEeecCCeEEEEECc
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HEVWSVTAGSQEIFCFSFGG----STDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~  154 (389)
                      .|....  ..|+.++.-|.|.|++....        ..+..++. ...|++++-.+    ++.-++..|....|..||+.
T Consensus         5 kfDG~~--pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    5 KFDGVH--PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EeCCCc--eeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            454443  57888888899999987632        34455554 57788887544    23446666667899999999


Q ss_pred             CCceeeeeeecccCCeeEEEEecCC---CCeEEEEeCCCcEEEEecCC
Q 016457          155 NKKQVACLEESHVEDVTQVHFVPNN---QNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~  199 (389)
                      ....+..-.  -...++++.+-.-+   ..++++|+ +..|.-||...
T Consensus        82 ~N~d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   82 NNSDLFYKE--VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             cCchhhhhh--CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            877665443  34667777763221   12444444 66777777763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.69  E-value=4.7  Score=35.67  Aligned_cols=142  Identities=8%  Similarity=0.042  Sum_probs=75.5

Q ss_pred             cceEEEeecCCCCeEEEEe-----------cCC-eEEEEeCCC--cee--eeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457           39 DYVFEIVPKNDWSLMAVSL-----------STN-VVKLYSPVT--GQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSS  102 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iw~~~~--~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  102 (389)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+...-.....+++.+++   ++++ +.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEe-CC
Confidence            3456889999998766542           123 777776433  332  23333333456788998766   4444 44


Q ss_pred             CCeEEEEEccCC-----eE--E-EEEEcC----CCCeEEEEEeCCCCeEEEeecC-------------------CeEEEE
Q 016457          103 DGTIRAWDTRSF-----HE--V-WSVTAG----SQEIFCFSFGGSTDYLLAAGCG-------------------SQIQFW  151 (389)
Q Consensus       103 dg~i~iwd~~~~-----~~--~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~iw  151 (389)
                      ....++.|....     +.  + ..+...    ......++|.|++...++.+..                   |.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            433334344311     21  1 112221    2447789999888766655521                   334445


Q ss_pred             ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      |...++ ...+..+ -.....++|+|++. ++++-.
T Consensus       170 ~pdg~~-~e~~a~G-~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       170 NPDGGK-LRVVAHG-FQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             ecCCCe-EEEEecC-cCCCccceECCCCC-EEEEcc
Confidence            544332 2233312 23356788988884 665533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.68  E-value=4.9  Score=35.83  Aligned_cols=145  Identities=13%  Similarity=0.114  Sum_probs=82.6

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceee-e-eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-G-ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH---  115 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---  115 (389)
                      ...+..++++.+++++.....++-||  .|+.. . .-......+.++.|.+++  ..++ ++.+|.+ ++....++   
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg--~l~l-~g~~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADG--GLWL-LTRGGGL-YVSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCC--CEEE-EeCCceE-EEecCCCCccc
Confidence            34456678887777776433333344  23321 1 112234568999999888  4554 4466764 34444443   


Q ss_pred             --EEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          116 --EVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       116 --~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                        ........  ...+.++.|. +++.++++|..|.+.... ..++.-....  ..-....+.+.|.+++  .....+.+
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~-~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~--~g~~~G~~  390 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYR-SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK--KGFVLGND  390 (398)
T ss_pred             ccceeecccCCCCcceEEEEEc-CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC--ceEEEeCC
Confidence              22222221  2458899998 566778888888777664 3343322221  1234568899998775  34555568


Q ss_pred             CcEEEE
Q 016457          190 GLICTF  195 (389)
Q Consensus       190 ~~i~i~  195 (389)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            877654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.67  E-value=3.6  Score=34.20  Aligned_cols=151  Identities=10%  Similarity=0.007  Sum_probs=82.6

Q ss_pred             cEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE-CcCCcee
Q 016457           82 TVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD-WRNKKQV  159 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~  159 (389)
                      .+.+.++++++  ..++... .++.-.+|-...+.....+.. ...+..-.|++++....+...+....++. ..++...
T Consensus        25 ~~~s~AvS~dg--~~~A~v~~~~~~~~L~~~~~~~~~~~~~~-g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDG--SRVAAVSEGDGGRSLYVGPAGGPVRPVLT-GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCC--CeEEEEEEcCCCCEEEEEcCCCcceeecc-CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            68899999999  4555544 233333443333333333322 24788889998855444444455556653 3333222


Q ss_pred             -eeeeeccc-CCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCC-----CccceeeeccCCceeeEEEecCCCcE
Q 016457          160 -ACLEESHV-EDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDIND-----DDLLESVINVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       160 -~~~~~~~~-~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (389)
                       ..+..... ..|+.+.++|+|. .++...   .++.|.+--+.....-     .............+..+.|. ++..+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-~~~~L  179 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-DDSTL  179 (253)
T ss_pred             eEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-CCCEE
Confidence             12221111 2899999999996 665554   3577777655422111     11112222335688999999 55555


Q ss_pred             EEEEecCC
Q 016457          230 LWCLTHIE  237 (389)
Q Consensus       230 l~~~~~d~  237 (389)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            55554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.65  E-value=4.4  Score=35.23  Aligned_cols=241  Identities=10%  Similarity=-0.005  Sum_probs=115.4

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCcee---eeee----cCCCCcEEEEEEeCCC--CCCEEEEEecC-------
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY---SGEC----KGHSSTVNQISFSGPS--TPHVLHSCSSD-------  103 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~---~~~~----~~~~~~v~~i~~~~~~--~~~~l~s~~~d-------  103 (389)
                      ..++|+|.|||++++ +...|.|++++ ..+..   +..+    .........++++|+-  ++.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999986655 56699999999 44443   2222    2345678999999951  10233333321       


Q ss_pred             -CeEEEEEccCC-------eEE-EEEEc---CCCCeEEEEEeCCCCeEEEeecC-------------CeEEEEECcCCce
Q 016457          104 -GTIRAWDTRSF-------HEV-WSVTA---GSQEIFCFSFGGSTDYLLAAGCG-------------SQIQFWDWRNKKQ  158 (389)
Q Consensus       104 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~  158 (389)
                       ..|.-|....+       +.+ ..+..   ....-..|.|.|++...++.|..             |.|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             23444444333       111 22222   24566779999988666666552             233333322 110


Q ss_pred             -------------eeeeeecccCCeeEEEEecC-CCCeEEEE-eCCCcEEEEecCCCCCC--------------------
Q 016457          159 -------------VACLEESHVEDVTQVHFVPN-NQNKVVSA-SVDGLICTFDTGGDIND--------------------  203 (389)
Q Consensus       159 -------------~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~--------------------  203 (389)
                                   ...+..++. ....++|+|. +. ++++= +.++.=.|.-+..+...                    
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence                         111111222 2457999998 53 33331 22322222222221100                    


Q ss_pred             -----CccceeeeccCCceeeEEEecC------CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          204 -----DDLLESVINVGTSVGKVGFFGE------TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       204 -----~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                           ..+.. ...+...+..+.|...      .+.++++.-..+.|....+.....+......-        .+....+
T Consensus       238 ~~~~~~~P~~-~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~r~  308 (331)
T PF07995_consen  238 SCPGFVPPVF-AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--------GGFGGRP  308 (331)
T ss_dssp             S-TTS---SE-EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------TTSSS-E
T ss_pred             CCCCcCccce-eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--------ccCCCCc
Confidence                 01111 2233456667777622      34456655556688887776553332221100        0123478


Q ss_pred             eeecccCCCCeEEEEEecCCceEE
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      .++++.|||.  +.++-+.+|.|+
T Consensus       309 ~~v~~~pDG~--Lyv~~d~~G~iy  330 (331)
T PF07995_consen  309 RDVAQGPDGA--LYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEETTSE--EEEEE-TTTTEE
T ss_pred             eEEEEcCCCe--EEEEECCCCeEe
Confidence            8999999986  555555777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02790 Kelch-like protein; Provisional

Probab=93.28  E-value=6.7  Score=36.20  Aligned_cols=100  Identities=12%  Similarity=-0.072  Sum_probs=48.7

Q ss_pred             CEEEEEecCC-----eEEEEEccCCeEEE--EEEcCCCCeEEEEEeCCCCeEEEeecC--CeEEEEECcCCcee--eeee
Q 016457           95 HVLHSCSSDG-----TIRAWDTRSFHEVW--SVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKKQV--ACLE  163 (389)
Q Consensus        95 ~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~--~~~~  163 (389)
                      .+++.||.++     .+..||..+++...  .+....... +++.. ++...++||.+  ..+..||..+++-.  ..+.
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            4667777543     46678877655332  121111122 22222 44445555543  46788887655322  2221


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCC---cEEEEecCCC
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDG---LICTFDTGGD  200 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~  200 (389)
                        ....-.+++. -++ .+.+.|+.++   .+..||.++.
T Consensus       351 --~~r~~~~~~~-~~g-~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        351 --KPRCNPAVAS-INN-VIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             --CCCcccEEEE-ECC-EEEEecCcCCCCccEEEEeCCCC
Confidence              1111112222 234 3777777553   4677887743

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.22  E-value=3.5  Score=32.72  Aligned_cols=106  Identities=12%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             CeEEEeecCCeEEEEECcC--CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC------cEEEE-ecCCCCCCCccc
Q 016457          137 DYLLAAGCGSQIQFWDWRN--KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG------LICTF-DTGGDINDDDLL  207 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~-d~~~~~~~~~~~  207 (389)
                      +.|+++...+.|.+|++..  .+.+.++.  .-+.|..+.++..|. ++++--.+.      .+++| +.+.......++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            5565556668999999983  34556665  558899999999995 888865432      44553 333221111111


Q ss_pred             e-ee---------------------eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          208 E-SV---------------------INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       208 ~-~~---------------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      . .+                     .....++.+++..|-.|++++. + ++.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEE
Confidence            1 11                     1123466778887667765543 3 457888887543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.10  E-value=2.4  Score=40.00  Aligned_cols=68  Identities=16%  Similarity=0.328  Sum_probs=49.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ..-++++.-+|.+..++.+..||.|++|++......+... ...+-..+.|...|    |+++..|..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg----l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG----LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc----eEEEeccchhheee
Confidence            5667888899999999999999999999986554322222 23344567777555    67777788777786

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.10  E-value=5.7  Score=34.88  Aligned_cols=201  Identities=13%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe----CCCCCCEEEEEe-cC---CeEEEEEcc--CCeE
Q 016457           47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS----GPSTPHVLHSCS-SD---GTIRAWDTR--SFHE  116 (389)
Q Consensus        47 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~~l~s~~-~d---g~i~iwd~~--~~~~  116 (389)
                      +|...+++....++-+.+||++ |+.++.+.  .+.++.+...    -.+...-|+.++ .+   .+|++|.+.  ++. 
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-  140 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-  140 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred             CcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence            3455677777778899999987 77777664  2344444332    123111144444 32   479999876  333 


Q ss_pred             EEEEEc-------CCCCeEEEEE--eCC-CC-eEEEeecCCeEEEEECc---CC----ceeeeeeecccCCeeEEEEecC
Q 016457          117 VWSVTA-------GSQEIFCFSF--GGS-TD-YLLAAGCGSQIQFWDWR---NK----KQVACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       117 ~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~  178 (389)
                      +..+..       ....+..+++  +|. +. +.++...+|.+..|-+.   .+    +.+++|.  -...+..++....
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe  218 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDE  218 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecc
Confidence            333322       1234667776  333 33 45556668988888775   22    3566776  4557888999888


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCCCCC-ccceeeec--cCCceeeEEEec-CCC-cEEE-EEecCCcEEEEEcCCC-ceeE
Q 016457          179 NQNKVVSASVDGLICTFDTGGDINDD-DLLESVIN--VGTSVGKVGFFG-ETN-KHLW-CLTHIETLSIWDWKDG-QNVA  251 (389)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~-~~~-~~l~-~~~~d~~i~i~d~~~~-~~~~  251 (389)
                      .. .|..+-++.-|.-|+.+...... ..+....+  ....|..+++.. .++ .+|+ +.-.+++..+|+.... ..+.
T Consensus       219 ~g-~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g  297 (381)
T PF02333_consen  219 TG-RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG  297 (381)
T ss_dssp             TT-EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred             cC-CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence            75 99999999888888887432211 11211111  235677777752 222 3444 4445679999998753 4444


Q ss_pred             Eee
Q 016457          252 SFE  254 (389)
Q Consensus       252 ~~~  254 (389)
                      .|.
T Consensus       298 ~f~  300 (381)
T PF02333_consen  298 SFR  300 (381)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.03  E-value=0.91  Score=36.65  Aligned_cols=69  Identities=10%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             ecCCCCeEEEEecCCeEEEEeCCCceeeeee-------c-------CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-------K-------GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        46 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      +..++.+|++-+.+|.+++||+.+++.+..-       .       .....|..+..+.+|  .-+++- .+|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~l-sng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTL-SNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEE-eCCCEEEecc
Confidence            4456778988999999999999988654321       2       345678888888777  344444 3567788886


Q ss_pred             cCCeEE
Q 016457          112 RSFHEV  117 (389)
Q Consensus       112 ~~~~~~  117 (389)
                      .-+.-+
T Consensus        95 ~L~~W~  100 (219)
T PF07569_consen   95 DLGCWI  100 (219)
T ss_pred             ccceeE
Confidence            644333

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.95  E-value=4.6  Score=33.95  Aligned_cols=114  Identities=14%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe------cCCeEEEEEccCCeEEEEEEc-----CCCCeE
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS------SDGTIRAWDTRSFHEVWSVTA-----GSQEIF  128 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~-----~~~~v~  128 (389)
                      ..|++||..+.+-...-.+-.+.|+++.|..+.  ++++.|.      ....+..||+.+.... .+..     -.++|.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT   92 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence            469999988766554445567889999998555  5777664      3456888998765432 2332     146788


Q ss_pred             EEEEeC-CCCeEEEeec----CCeEEEEECcCCceeee-eeecccCCeeEEEEec
Q 016457          129 CFSFGG-STDYLLAAGC----GSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVP  177 (389)
Q Consensus       129 ~~~~~~-~~~~l~~~~~----d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~  177 (389)
                      .+.+.. +...+.++|.    +..|..||=.+...+.. .. .....|..+.+-|
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~  146 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP  146 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence            887742 3444554443    34566776554444433 11 2234455555443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=3.9  Score=32.22  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCeEEEEec--CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC
Q 016457           49 DWSLMAVSLS--TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE  126 (389)
Q Consensus        49 ~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  126 (389)
                      +|.++.+.+.  ...|++||+.+|+.+.+-.-....+..=-...-++ .+.+-.-.+|.-..+|.++.+.+..+.. .+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y-~Ge  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSY-EGE  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhccccc-CCc
Confidence            3455555554  34799999999987765432111221111111121 1333344677788899998888877765 355


Q ss_pred             eEEEEEeCCCCeEEEeecCCeEEEEECcCCcee
Q 016457          127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV  159 (389)
Q Consensus       127 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  159 (389)
                      =+.++.  ++..++.+.....+..-|.++....
T Consensus       133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~  163 (262)
T COG3823         133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL  163 (262)
T ss_pred             ceeeec--CCcceEeeCCceEEEecCHHHhhhc
Confidence            666665  5666776666677777777655433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.76  E-value=7.3  Score=35.21  Aligned_cols=140  Identities=12%  Similarity=0.104  Sum_probs=90.3

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-------CeEEEeecCCeEEEEECcCCc-eeeeee--e-
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-------DYLLAAGCGSQIQFWDWRNKK-QVACLE--E-  164 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~-~~~~~~--~-  164 (389)
                      ++..|+....+.-.|+..|+.+..+..|...  -+.|.|..       ..-++|-++..|.-.|.|... .+....  . 
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            4445666677888899999999999987444  56777643       335566667777777877432 222211  0 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      .......|..-...|  ++++++..|-|++||--..    .....+.+.+..|..+... .+|+++++.+. ..+.+-|+
T Consensus       560 ~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvt-a~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         560 KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVT-ANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             cccccccccccccCc--eEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEee-cCCcEEEEeec-ceEEEEec
Confidence            112234444444554  8999999999999997632    1223344567788888888 77777666554 46667675


Q ss_pred             C
Q 016457          245 K  245 (389)
Q Consensus       245 ~  245 (389)
                      .
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.34  E-value=12  Score=36.76  Aligned_cols=199  Identities=10%  Similarity=0.091  Sum_probs=111.1

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEE--------EcCCCCeEEEEEe--CCCCeEEEeecC---CeEEEEECcC--C---
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSV--------TAGSQEIFCFSFG--GSTDYLLAAGCG---SQIQFWDWRN--K---  156 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~--~~~~~l~~~~~d---~~i~iwd~~~--~---  156 (389)
                      .-++.....|.+++|-.+........        ......|+..++.  .++..+++++.+   +.|++|.+.-  +   
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~  142 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP  142 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence            35666678899999977432222111        1224556655554  455566666654   7888875431  1   


Q ss_pred             -----c--eeeeeee---c-----------------ccCCeeEEEEec------CCCCeEEEEeC----CCcEEEEecCC
Q 016457          157 -----K--QVACLEE---S-----------------HVEDVTQVHFVP------NNQNKVVSASV----DGLICTFDTGG  199 (389)
Q Consensus       157 -----~--~~~~~~~---~-----------------~~~~v~~~~~~~------~~~~~l~~~~~----d~~i~i~d~~~  199 (389)
                           +  +-..+..   .                 .-..++.+.|-+      ..+..+++.+.    ...|.-|.++.
T Consensus       143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence                 0  1111110   0                 112566777765      12224544443    34689999874


Q ss_pred             CCCCC-----------------ccceee-----eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe----
Q 016457          200 DINDD-----------------DLLESV-----INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF----  253 (389)
Q Consensus       200 ~~~~~-----------------~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----  253 (389)
                      ....-                 .....+     ......|.++... .-+.+++..-.||+|.++|-.+.+.+...    
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEec-ccCcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence            32100                 000001     1123456677765 55668999999999999999888766555    


Q ss_pred             eccc---ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          254 ENAR---SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       254 ~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      ....   .+....+.++....+..++|||.+.  .++.-..+|.+.
T Consensus       302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c--~~v~~~~~~~~~  345 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC--SLVQIDEDGKTK  345 (753)
T ss_pred             CCccccccccccccccccCCCCceEEECcccc--eEEEEecCCCce
Confidence            2111   1222334444445666789999987  567777788755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.20  E-value=3.8  Score=41.30  Aligned_cols=174  Identities=13%  Similarity=0.095  Sum_probs=102.1

Q ss_pred             EEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe--------CC
Q 016457           64 LYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG--------GS  135 (389)
Q Consensus        64 iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~  135 (389)
                      +|++. .+.+..+. |...-..+-+.|.-. ..-+  +.|+.+.+|+.+++.....+.+-...|..+..-        |.
T Consensus        64 v~~IP-~el~eq~~-~~~~~~~mGiFpeI~-RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~  138 (1311)
T KOG1900|consen   64 VVNIP-DELLEQFS-NIECKTDMGIFPEIG-RAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE  138 (1311)
T ss_pred             cccCC-HHHHHHhc-Ccceeeeeccchhhc-ceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh
Confidence            34443 23344444 444555555555542 2333  357889999999988777777767777776642        22


Q ss_pred             CCeEEEeecCCeEEEEECc----CCce-----eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC----
Q 016457          136 TDYLLAAGCGSQIQFWDWR----NKKQ-----VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN----  202 (389)
Q Consensus       136 ~~~l~~~~~d~~i~iwd~~----~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----  202 (389)
                      =.++++.+.--.|.++-+.    ++..     ..++. ..+..|+|+....+|+ .|+ ++.||.|+-+-......    
T Consensus       139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~-~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~  215 (1311)
T KOG1900|consen  139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS-VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGS  215 (1311)
T ss_pred             hheeEEecccceEEEEEEEeccccCcccccccceeee-cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhc
Confidence            2455555555566665432    1111     12222 2356789999888885 555 55566444322221100    


Q ss_pred             --C------------Cccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          203 --D------------DDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       203 --~------------~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                        .            ...+..+. .+..+|..+... .....+.+-+..++|.+||+..
T Consensus       216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEccC
Confidence              0            00012222 456789999997 6677899999999999999976

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.09  E-value=5.5  Score=36.08  Aligned_cols=28  Identities=7%  Similarity=-0.021  Sum_probs=21.9

Q ss_pred             CeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457          126 EIFCFSFGGSTDYLLAAGCGSQIQFWDW  153 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~  153 (389)
                      .|..+..++.|..++.+|.+|.+.++=.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp  132 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELP  132 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEch
Confidence            4667778888999999999888777643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.43  E-value=7.5  Score=32.48  Aligned_cols=191  Identities=10%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee---eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG---ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      .+.+..+.++.+  +...+..+.-++|.|+.+...-.   .+. ..+--.++..  .|  ++...+..|.-+.+.|+.+.
T Consensus        86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sG--n~aYVadlddgfLivdvsdp  158 (370)
T COG5276          86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SG--NYAYVADLDDGFLIVDVSDP  158 (370)
T ss_pred             hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cC--CEEEEeeccCcEEEEECCCC
Confidence            666777888765  56666667779999987653222   222 1122333333  45  58888886666778888754


Q ss_pred             ---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       115 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                         +....+.........++.+  +++-+++..|+-+.+.|+.....   +....  ....+.++..+++.. +++ .. 
T Consensus       159 ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~-y~v-vy-  231 (370)
T COG5276         159 SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRA-YLV-VY-  231 (370)
T ss_pred             CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCee-EEE-Ec-
Confidence               3344444445555677775  78888888899999999986543   33332  233678888887642 333 33 


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      +.-+.+-|..+.. . ..+........+  +..+..   .+++......+.-+.+-|+.+.
T Consensus       232 ~egvlivd~s~~s-s-p~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         232 DEGVLIVDVSGPS-S-PTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             ccceEEEecCCCC-C-ceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCC
Confidence            4447777777432 1 111111122222  222333   3456666666666666666543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.42  E-value=1.3  Score=24.37  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             CCCCeEEEeec-CCeEEEEECcCCceeeeee
Q 016457          134 GSTDYLLAAGC-GSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus       134 ~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~  163 (389)
                      |++++++++.. ++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            56777887775 7899999999888888776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.35  E-value=1.6  Score=41.09  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             CCCCeEEEEecCCeEEEEeCCC----ceeeee-----------ecC-----------CCCcEEEEEEeC----CCCCCEE
Q 016457           48 NDWSLMAVSLSTNVVKLYSPVT----GQYSGE-----------CKG-----------HSSTVNQISFSG----PSTPHVL   97 (389)
Q Consensus        48 ~~~~~l~~~~~d~~i~iw~~~~----~~~~~~-----------~~~-----------~~~~v~~i~~~~----~~~~~~l   97 (389)
                      ++...++++..||.+.......    +.....           +.+           ....+..++..+    +.  .+|
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l  233 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD--TFL  233 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT--TEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC--CEE
Confidence            3566788888899888877653    111110           110           123455556655    33  699


Q ss_pred             EEEecCCeEEEEEccCCeEEEEEEc
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWSVTA  122 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~~~~  122 (389)
                      ++.+.|+++|+||+.+++++.+...
T Consensus       234 ~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  234 FTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EEEETTSEEEEEETTTTCEEEEEET
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecc
Confidence            9999999999999999999777654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.30  E-value=1.5  Score=33.96  Aligned_cols=31  Identities=6%  Similarity=0.151  Sum_probs=22.9

Q ss_pred             CCeEEEEEeCCC-----C-eEEEeecCCeEEEEECcC
Q 016457          125 QEIFCFSFGGST-----D-YLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus       125 ~~v~~~~~~~~~-----~-~l~~~~~d~~i~iwd~~~  155 (389)
                      ..+..++|+|.|     + .|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999843     2 355556699999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=91.09  E-value=9.8  Score=33.17  Aligned_cols=153  Identities=12%  Similarity=0.066  Sum_probs=80.5

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      ...+.++.+.+++  .++ ..+..|.+.. ..+.+ +.-..+. .....++++.+.+++..+ +.+..|.+.+=....+.
T Consensus       172 ~g~~~~i~~~~~g--~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~-~vg~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG--KYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLW-MLARGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC--eEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEE-EEecCCEEEEccCCCCC
Confidence            4568899999887  444 4455665432 11222 2222222 235788999999766554 45566776543233333


Q ss_pred             eeeeeeec---ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          158 QVACLEES---HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       158 ~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      .-.....+   ....+..+.+.|++. . +.++.+|.+.. ....+. ....+............+.|. +++ ..+..+
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~-~-~~~G~~G~v~~-S~d~G~-tW~~~~~~~~~~~~~~~~~~~-~~~-~~~~~G  320 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGE-I-WAGGGNGTLLV-SKDGGK-TWEKDPVGEEVPSNFYKIVFL-DPE-KGFVLG  320 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCC-E-EEEcCCCeEEE-eCCCCC-CCeECCcCCCCCcceEEEEEe-CCC-ceEEEC
Confidence            22221101   124578899998764 4 44556776553 333221 111211111223457777776 344 455666


Q ss_pred             cCCcEEEEE
Q 016457          235 HIETLSIWD  243 (389)
Q Consensus       235 ~d~~i~i~d  243 (389)
                      ..|.|--|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            778776665

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.86  E-value=9.6  Score=32.66  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             CCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe-cCCeEEEEEcc
Q 016457           49 DWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSSTVNQISFSGPSTPHVLHSCS-SDGTIRAWDTR  112 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~  112 (389)
                      ++++|+.|+.+| +.+.+...  ++..+.+  +...|+++...+..  +.|++-+ ....++.+++.
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~--~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEEN--NVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhh--CEEEEEeCCcceEEEEEHH
Confidence            336899999888 55555554  2333333  46789999999877  4555544 34459999985

Unpublished observations.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.39  E-value=17  Score=34.62  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=85.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecC-CCCcEEEEEEeCCCC----CCEEEEEec-C---CeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKG-HSSTVNQISFSGPST----PHVLHSCSS-D---GTI  106 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~-~~~~v~~i~~~~~~~----~~~l~s~~~-d---g~i  106 (389)
                      ++.|-.+.|.++++.+++...+|.|.+||...+.  .+..+.. +...+.-=+|-++..    ..++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            6788899999999999999999999999993332  1112211 222111112222211    145555554 3   246


Q ss_pred             EEEEcc-CCeEEEEEE---cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec----cc-CCeeEEEEec
Q 016457          107 RAWDTR-SFHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES----HV-EDVTQVHFVP  177 (389)
Q Consensus       107 ~iwd~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~-~~v~~~~~~~  177 (389)
                      +++.+. ....+..+.   .+........|.-+.+.++.- .++.|.+|++...+...++.-.    .. ..+.++.  |
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~--~  285 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK--P  285 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee--c
Confidence            777771 222333332   122223333333344454444 6789999999888776665521    11 1233332  2


Q ss_pred             CCCCeEEEEeCCCcEEEEecC
Q 016457          178 NNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      -.+++++.+. ++.|++.|+.
T Consensus       286 ~s~nRvLLs~-~nkIyLld~~  305 (670)
T PF10395_consen  286 PSPNRVLLSV-NNKIYLLDLK  305 (670)
T ss_pred             CCCCeEEEEc-CCEEEEEeeh
Confidence            2223444443 6789999987

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.15  E-value=10  Score=31.94  Aligned_cols=207  Identities=14%  Similarity=0.112  Sum_probs=113.3

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEcc------CC-eEEEEEEc-----CCCCeEEEEEeCCCC------------
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTR------SF-HEVWSVTA-----GSQEIFCFSFGGSTD------------  137 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------  137 (389)
                      .-+.|+++|.+  .+-++...-+...+||..      .. ..+-++..     .....+.+.|+....            
T Consensus        24 N~WGia~~p~~--~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGG--PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCC--CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            45789999988  577777777889999986      12 22333332     134677888874332            


Q ss_pred             eEEEeecCCeEEEEECcCCce-----eeeeeecccCCe-eEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457          138 YLLAAGCGSQIQFWDWRNKKQ-----VACLEESHVEDV-TQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLES  209 (389)
Q Consensus       138 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v-~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  209 (389)
                      .++.++.||+|.-|...-...     ...+.......| ..+++-..  +..+.++--..++|.+||-.-.....  ...
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~  179 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGS  179 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCC
Confidence            256677899999998543222     122221112223 34555433  43345555568999999876221000  000


Q ss_pred             eec----cCCceeeEEEe-----------cCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          210 VIN----VGTSVGKVGFF-----------GETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       210 ~~~----~~~~i~~~~~~-----------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      +..    ..-....+.-.           .++...=+.+..-|.|-+||+. ++.++.+.....          -...+.
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~----------LNaPWG  248 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR----------LNAPWG  248 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc----------ccCCce
Confidence            000    00111111111           0111122333444789999975 778877754321          133445


Q ss_pred             ecccCC------CCeEEEEEecCCceEEEEEeccCCc
Q 016457          275 CHYPGE------GENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       275 ~~~~~~------~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++..|-      +.  +|+.--.||+|..||..+++.
T Consensus       249 ~a~APa~FG~~sg~--lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       249 LAIAPESFGSLSGA--LLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             eeeChhhhCCCCCC--eEEeecCCceeEEecCCCCce
Confidence            555442      34  566666799999999988775

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.95  E-value=13  Score=32.76  Aligned_cols=193  Identities=11%  Similarity=0.114  Sum_probs=107.7

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEe----CCCCe--EEEeec-C---CeEEEEECcCC-ceeeeee
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG----GSTDY--LLAAGC-G---SQIQFWDWRNK-KQVACLE  163 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---~~i~iwd~~~~-~~~~~~~  163 (389)
                      .+++....++-+.+||+. |+.+..+..  +.++.+..-    -.+..  |++++. +   ..|++|-+... ..+..+.
T Consensus        69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             -EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             ceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            477777888889999986 677777653  345544432    12333  445544 2   47999977521 2233322


Q ss_pred             e------cccCCeeEEEEe--c-CCCCeEEEEeCCCcEEEEecCCCC---CCCccceeeeccCCceeeEEEecCCCcEEE
Q 016457          164 E------SHVEDVTQVHFV--P-NNQNKVVSASVDGLICTFDTGGDI---NDDDLLESVINVGTSVGKVGFFGETNKHLW  231 (389)
Q Consensus       164 ~------~~~~~v~~~~~~--~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  231 (389)
                      .      .....+..+++.  | ++..+++....+|.+..|-+....   .....++++ ...+.+..+... +....|+
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~EGCVVD-De~g~LY  223 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPEGCVVD-DETGRLY  223 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EEEEEEE-TTTTEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcceEEEEe-cccCCEE
Confidence            0      111335666663  3 344467777889999888885221   112334444 345688899998 6667899


Q ss_pred             EEecCCcEEEEEcCCC-----ceeEEeecccccccCCccCCCCCceeeeccc--CCCCeEEEEEecCCceEEEEEecc
Q 016457          232 CLTHIETLSIWDWKDG-----QNVASFENARSLASDSWTLDDVDYFVDCHYP--GEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .+-++.-|.-|+.+..     ..+....+..          ....+-.+++.  .+++..+|++.-.+++..||+...
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~----------l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDG----------LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S--EEEEEBSSSS----------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecCccEEEEEecCCCCCCcceeeecccccc----------cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999988888887632     1222222211          22456666664  455564555655677899999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.71  E-value=8.3  Score=36.90  Aligned_cols=115  Identities=9%  Similarity=0.010  Sum_probs=72.2

Q ss_pred             CeEEEEEeC--CCCeEEEeecCCeEEEEECcC-------C-------------ceeeeeeecccCCeeEEEEe--cCCCC
Q 016457          126 EIFCFSFGG--STDYLLAAGCGSQIQFWDWRN-------K-------------KQVACLEESHVEDVTQVHFV--PNNQN  181 (389)
Q Consensus       126 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~  181 (389)
                      .|+.|....  ....|+++..||.|.+|.+++       .             ++...+.  -...+..++++  ... +
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~-r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKS-R  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcc-e
Confidence            455554332  345577778899999997632       0             0112222  34578899998  666 3


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC----C-cEEEEEecCCcEEEEEc
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET----N-KHLWCLTHIETLSIWDW  244 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~-~~l~~~~~d~~i~i~d~  244 (389)
                      +||+++....|.||-..... ..........+..-|-+|+|.+.+    | ..+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888888776321 111111122356678899997433    2 27788888999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.55  E-value=13  Score=32.24  Aligned_cols=118  Identities=11%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCc------EEEEecCCCCCCCc-----cceeeeccCC--------ceeeEEEecCCCc
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGL------ICTFDTGGDINDDD-----LLESVINVGT--------SVGKVGFFGETNK  228 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~~~~~~-----~~~~~~~~~~--------~i~~~~~~~~~~~  228 (389)
                      +.++.|.+.+++. .+++.+.+|.      +..+++........     ....+....+        -..++++. +++.
T Consensus        20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~-~~g~   97 (326)
T PF13449_consen   20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP-PDGS   97 (326)
T ss_pred             CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe-cCCC
Confidence            4578899987664 7888888888      77666663110000     0111111111        33477884 7787


Q ss_pred             EEEEEecC------CcEEEEEcCCCceeEEeecccccccCC---ccCCCCCceeeecccCCCCeEEEEE
Q 016457          229 HLWCLTHI------ETLSIWDWKDGQNVASFENARSLASDS---WTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       229 ~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ++++.-.+      ..|..++.. |+.+..+..........   -.......+-+++++|+|+.+|.+.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            77777777      788888876 77666653222111000   1122557788999999999555443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.47  E-value=15  Score=32.64  Aligned_cols=148  Identities=14%  Similarity=0.063  Sum_probs=85.0

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcCC--CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc-CCeeE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGS--QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV-EDVTQ  172 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~  172 (389)
                      .+..+..+|.|.-.|..+++.+.......  ..+.+-.+. .++.+++++.++.+..+|.++++.+.... ... ..+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~-~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG-SDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE-eCCeEEEecccceEEEEECCCCcEEEEEe-cCCCeEEec
Confidence            67777889999999999888776544321  222222233 25668888889999999998999888876 333 11112


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc-c---eeeeccCCceeeEEEecCCCcEEEEEec--CCcEEEEEcCC
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL-L---ESVINVGTSVGKVGFFGETNKHLWCLTH--IETLSIWDWKD  246 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~  246 (389)
                      -..-.++  .+..++.++.+...|..++...... .   ........++    .  .++ .++.+..  ++.+.-+|..+
T Consensus       148 ~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~--~~~-~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         148 PPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----I--ASG-TVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             CcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----e--ecc-eEEEecCCCcceEEEEEccC
Confidence            2222332  4555556788888877765321100 0   1111111111    1  222 3444444  56677778888


Q ss_pred             CceeEEee
Q 016457          247 GQNVASFE  254 (389)
Q Consensus       247 ~~~~~~~~  254 (389)
                      +...-...
T Consensus       219 G~~~w~~~  226 (370)
T COG1520         219 GTLKWSQK  226 (370)
T ss_pred             CcEeeeee
Confidence            87766543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.34  E-value=3.1  Score=32.19  Aligned_cols=31  Identities=10%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             CCeeEEEEecCC-----CCeEEEEeCCCcEEEEecC
Q 016457          168 EDVTQVHFVPNN-----QNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       168 ~~v~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~  198 (389)
                      ..+..++|+|.|     +-+|++.+.++.|.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478999999964     3489999999999999877

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.18  E-value=5.2  Score=37.93  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      ....++++.-+|.+  +.++++..||+|++|+....+....... ..+-..+.|.  +.-++++.+|..+.-|. +.|-.
T Consensus        13 ~~e~~~aiqshp~~--~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~t--nhgl~~~tsdrr~la~~-~dgvv   86 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGG--QSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFT--NHGLVTATSDRRALAWK-EDGVV   86 (1636)
T ss_pred             ccceeeeeeecCCC--ceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeee--ccceEEEeccchhheee-ccCcc
Confidence            34567788888888  7999999999999999865444222221 2334455564  44567777788888886 34544


Q ss_pred             eeeee--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          159 VACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       159 ~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .+++.  ........++...|..+  =++|+-.|-|.-+|.-
T Consensus        87 qqqfdyndqsekefss~~cdptaq--nvvgtlcggv~q~dcc  126 (1636)
T KOG3616|consen   87 QQQFDYNDQSEKEFSSILCDPTAQ--NVVGTLCGGVEQFDCC  126 (1636)
T ss_pred             hhhccccchhhhhccceecCchhh--hhhhhhccceeeehHH
Confidence            33333  22334566777778764  3345555667766653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.06  E-value=25  Score=34.79  Aligned_cols=164  Identities=12%  Similarity=0.169  Sum_probs=94.2

Q ss_pred             CCCeEEEEEe---C---CCCeEEEeecCCeEEEEECcCC---------------ceeeeee--ecccCCeeEEEEecCCC
Q 016457          124 SQEIFCFSFG---G---STDYLLAAGCGSQIQFWDWRNK---------------KQVACLE--ESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       124 ~~~v~~~~~~---~---~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~--~~~~~~v~~~~~~~~~~  180 (389)
                      ..+|..|+|.   .   ....+++.=....+.|+...-.               .++..+.  .....+...++|+|...
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~  158 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ  158 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence            5778878776   2   1223555555667777762111               2333333  11234678899999887


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCC-ccceeeecc----------CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          181 NKVVSASVDGLICTFDTGGDINDD-DLLESVINV----------GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~----------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      ..||+....|...|||+....... .........          .+....+.|. .+...|++++. ..+.++|+.+...
T Consensus       159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-~~~~~lLv~~r-~~l~~~d~~~~~~  236 (765)
T PF10214_consen  159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-SDSNRLLVCNR-SKLMLIDFESNWQ  236 (765)
T ss_pred             ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-CCCCEEEEEcC-CceEEEECCCCCc
Confidence            799999999999999993211111 111111111          1233477887 45555666654 4678999987765


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCC-eEEEEEecCCceEEEEEecc
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGE-NLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ...+...+          ....|.++.-++... .++|+|.   ..|...++..
T Consensus       237 ~~~l~~~~----------~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  237 TEYLVTAK----------TWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS  277 (765)
T ss_pred             cchhccCC----------ChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence            43222211          336788888888733 2233333   3466667665

These proteins are found in fungi.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.33  E-value=29  Score=34.65  Aligned_cols=173  Identities=10%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             eEEEEeCCCceeeeeecCC----CCcEEEEEEeCCCCCCEEEEEec-----------CCeEEEEEcc-CCeEEEEEEcC-
Q 016457           61 VVKLYSPVTGQYSGECKGH----SSTVNQISFSGPSTPHVLHSCSS-----------DGTIRAWDTR-SFHEVWSVTAG-  123 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------dg~i~iwd~~-~~~~~~~~~~~-  123 (389)
                      .|++.|..+++.+..+.-.    .-.+.++.|+......++++|..           +|.++.|++- .++.+.-+... 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            3777777766655544311    12356666765553113333321           2335555542 33322222211 


Q ss_pred             -CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc-cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC
Q 016457          124 -SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH-VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       124 -~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (389)
                       ...+  .+..|..++++++- ...+++||+...++++.....+ ...|+.+.+...   .+++|...-.+.++-.+.. 
T Consensus       934 ~~~~v--~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~~- 1006 (1205)
T KOG1898|consen  934 IPGPV--GAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRRE- 1006 (1205)
T ss_pred             CCccc--eEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEecC-
Confidence             2334  34455666655554 4899999998887766554223 566777777653   6777776666766666522 


Q ss_pred             CCCccceeee--ccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          202 NDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       202 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                        ...+..+.  ..+..|+.+.+.  +...++.+..-|.+.+-.+
T Consensus      1007 --~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1007 --DNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             --CCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence              12233322  234556666665  3346777777677666554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.06  E-value=19  Score=36.67  Aligned_cols=107  Identities=15%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC-CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  160 (389)
                      ....++|.|..  .+++.+...|.|+++-...-+.......... .+..+.+-.......+-..+..+.+|.......+.
T Consensus        37 ~~~~~afD~~q--~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~  114 (993)
T KOG1983|consen   37 TPSALAFDPTQ--GLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF  114 (993)
T ss_pred             CCcceeecccc--ceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence            45678888888  7999999999999997653333222211110 11222222122222333334455555443222111


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                           ....+++....+--. + +.+ ..+.+++||..
T Consensus       115 -----~~~~~~~~~~~~~~~-~-~~g-~~~~~~~~~~~  144 (993)
T KOG1983|consen  115 -----LKQEITSFVTDPPPD-W-LIG-ENGLVKVSDVL  144 (993)
T ss_pred             -----cCCcceeccCCCCcc-h-hcc-cCceeeEeeec
Confidence                 233344443333221 3 445 78888888887

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.89  E-value=2.4  Score=40.22  Aligned_cols=100  Identities=15%  Similarity=0.260  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCCCCEEEEEecCC-----eEEEEEcc---CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457           83 VNQISFSGPSTPHVLHSCSSDG-----TIRAWDTR---SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  154 (389)
                      -..+.|-|.|  ..++|-+.||     .|.++..+   .|+.-.... -...+..++|+ -...+++.+..+.|.+|-..
T Consensus       249 e~~LSWkpqg--S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~-~dEk~~~~~wn-~~s~vlav~~~n~~~lwttk  324 (1243)
T COG5290         249 EHQLSWKPQG--SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVG-CDEKAFLENWN-LLSTVLAVAEGNLLKLWTTK  324 (1243)
T ss_pred             hhccccccCC--ceeeeeccCCCCCcceEEEEccCCcccCCccccCC-chhhhhhhhhh-HHHHHHHHhhcceEEEEEcc
Confidence            3458899999  5899877555     35555432   122211111 13456677776 34445555667899999876


Q ss_pred             CCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      +..-..... ..-..+.-+.|+|...+.++..+
T Consensus       325 NyhWYLK~e-~~ip~~s~vkwhpe~~nTl~f~d  356 (1243)
T COG5290         325 NYHWYLKVE-RQIPGISYVKWHPEEKNTLLFRD  356 (1243)
T ss_pred             ceEEEEEEe-ecCCCcceeeeccccCcEEEEec
Confidence            654332222 23345777889998766555544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.86  E-value=5  Score=37.82  Aligned_cols=75  Identities=19%  Similarity=0.352  Sum_probs=44.1

Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCcc--------------ceeee--------ccCCceeeEEEec---CCCcEEEEEec
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDL--------------LESVI--------NVGTSVGKVGFFG---ETNKHLWCLTH  235 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~--------~~~~~i~~~~~~~---~~~~~l~~~~~  235 (389)
                      ..++.+..||.+..............              +..+.        ........+++..   .+..++++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            47888888999888887641100000              00000        0112344455542   25679999999


Q ss_pred             CCcEEEEEcCCCceeEEeec
Q 016457          236 IETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       236 d~~i~i~d~~~~~~~~~~~~  255 (389)
                      |+.+++||+.+++++.+...
T Consensus       239 D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             TSEEEEEETTTTCEEEEEET
T ss_pred             CCeEEEEECCCCeEEEEecc
Confidence            99999999999999777644

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.76  E-value=30  Score=33.03  Aligned_cols=246  Identities=10%  Similarity=0.082  Sum_probs=127.3

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCC-Cceeeeeec-CCCCcEEEEEEeCCCC-CCEEEEEecCC-eEEEEEccCC----
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPV-TGQYSGECK-GHSSTVNQISFSGPST-PHVLHSCSSDG-TIRAWDTRSF----  114 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~-~~~~~v~~i~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~----  114 (389)
                      +..++|+.+.+-.|=+...|.-|=+. +.+.+..+. ..+..|.|+....... ..+.+.|-.++ .-++-.+..+    
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~  111 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST  111 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence            44678888777777655555555432 456666654 2456677777654321 13555553443 3343333322    


Q ss_pred             -------e--EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEec-----C
Q 016457          115 -------H--EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVP-----N  178 (389)
Q Consensus       115 -------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~-----~  178 (389)
                             +  ....++. .+.|-.+.+.+++..+++.-.+|.|.+||...+.  .+..+...+...+.-=.|-+     +
T Consensus       112 ~~~~~~~e~~~~~~~kl-~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~  190 (670)
T PF10395_consen  112 EDGTVNSETTNEFELKL-DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN  190 (670)
T ss_pred             cccccCccccceEEEEc-ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence                   1  1223333 5789999999889999999999999999993222  11122211222111112211     2


Q ss_pred             CCCeEEEEeC-C---CcEEEEecCCCCCCCccceee---eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          179 NQNKVVSASV-D---GLICTFDTGGDINDDDLLESV---INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       179 ~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      +..++++.+. +   -..+++.+...   ...+..+   ...........|.-..|.+.-.  .+++|.+|++.+.+..+
T Consensus       191 ~~~~ll~v~~~~~~k~~ykL~~l~~~---~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~  265 (670)
T PF10395_consen  191 GKDLLLTVSQLSNSKLSYKLISLSNE---SSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQK  265 (670)
T ss_pred             CCceEEEEEEcCCCcEEEEEEEeccC---CcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEE
Confidence            2235555544 3   23667777211   1222222   1222233333333244543333  77899999998888777


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      ++.-...+...     . ..+.++.- |..++ .|++  .+..|++.|+.-..
T Consensus       266 tI~l~~ii~~~-----~-~~~vSl~~-~s~nR-vLLs--~~nkIyLld~~~~s  308 (670)
T PF10395_consen  266 TISLPSIIDKE-----S-DDLVSLKP-PSPNR-VLLS--VNNKIYLLDLKFES  308 (670)
T ss_pred             EEEechhhccc-----c-ccceEeec-CCCCe-EEEE--cCCEEEEEeehhhh
Confidence            76643222111     0 12333322 22233 3444  46689999986543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=86.31  E-value=3.4  Score=22.57  Aligned_cols=21  Identities=5%  Similarity=-0.031  Sum_probs=16.7

Q ss_pred             CCCeEEEeecCCeEEEEECcC
Q 016457          135 STDYLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~  155 (389)
                      .++.+++++.||.+..+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            577899999999999999764

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=85.93  E-value=43  Score=34.13  Aligned_cols=181  Identities=12%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             eEEEEEccCCeEEEEEEcC-CCCeEEEEEeC---------CCCeEEEeec---------CCeEEEEECcC-----Cce--
Q 016457          105 TIRAWDTRSFHEVWSVTAG-SQEIFCFSFGG---------STDYLLAAGC---------GSQIQFWDWRN-----KKQ--  158 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~---------~~~~l~~~~~---------d~~i~iwd~~~-----~~~--  158 (389)
                      .|.+.+..+.+.+-.+... ...+++++..-         ...++++|..         -|.++++|+-.     +++  
T Consensus      1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred             eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence            3455555555444443332 23345544321         1345666543         38999999743     222  


Q ss_pred             ---eeee-eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          159 ---VACL-EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       159 ---~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                         ++.+ .+..+++|..++=- +|  .|+++. ...|.+|++.... . -.-..+...+-.+.++...   .++++.|.
T Consensus      1085 ~~KlKel~~eE~KGtVsavceV-~G--~l~~~~-GqKI~v~~l~r~~-~-ligVaFiD~~~yv~s~~~v---knlIl~gD 1155 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RG--HLLSSQ-GQKIIVRKLDRDS-E-LIGVAFIDLPLYVHSMKVV---KNLILAGD 1155 (1366)
T ss_pred             cceeeeeehhhcccceEEEEEe-cc--EEEEcc-CcEEEEEEeccCC-c-ceeeEEeccceeEEehhhh---hhheehhh
Confidence               2222 22455677766643 34  555554 5679999995211 0 0011112222222222221   33566666


Q ss_pred             cCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          235 HIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       235 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      --..|.+.-... +..+..+....          ..-.+.++.|--+|..++++++..++.|++|-.....
T Consensus      1156 V~ksisfl~fqeep~rlsL~srd~----------~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRLSLLSRDF----------EPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred             hhhceEEEEEccCceEEEEeecCC----------chhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence            556666655432 22233332211          2356788899999999999999999999999776443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.18  E-value=4.5  Score=22.14  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=25.0

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF  132 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  132 (389)
                      ++++...+++|.++|..+++.+..+... .....++|
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            4444556889999999999888888764 33444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.15  E-value=5.5  Score=35.37  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=91.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee-ee-cC-CC---CcEE-EEEEeCCCCCCEEEEEecCCeEEEE-
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG-EC-KG-HS---STVN-QISFSGPSTPHVLHSCSSDGTIRAW-  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~-~~-~~---~~v~-~i~~~~~~~~~~l~s~~~dg~i~iw-  109 (389)
                      ...|..+-..|||+.+.+-+. .++.++++.+..... .+ .. ..   ..|+ .+.....+  ..++.++.||.|.-| 
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg--~SLLv~~~dG~vsQWF  296 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG--FSLLVVHEDGLVSQWF  296 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc--eeEEEEcCCCceeeee
Confidence            566777889999998887764 778888876542211 11 11 11   1122 11112233  568888899988877 


Q ss_pred             EccCC-----eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          110 DTRSF-----HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       110 d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      |++.+     ..++.++....++..+.-..+.+-+++-...|++..+.....+.+..-  .--..+.-++++|.+. .++
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~-~Ll  373 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQA-YLL  373 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccc-hhe
Confidence            55432     223333333445554444323344556666888888775444433222  1234677889999985 666


Q ss_pred             EEeCCCcEEEEecCCC
Q 016457          185 SASVDGLICTFDTGGD  200 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~  200 (389)
                      +- ..|.++++.+.+.
T Consensus       374 ~e-~~gki~~~~l~Nr  388 (733)
T COG4590         374 SE-DQGKIRLAQLENR  388 (733)
T ss_pred             ee-cCCceEEEEecCC
Confidence            54 4678999988844

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.72  E-value=21  Score=29.38  Aligned_cols=147  Identities=9%  Similarity=-0.022  Sum_probs=74.9

Q ss_pred             EEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeec-C--CeEEEEECcC---Cceeeeee--ecccCCeeEEEEe
Q 016457          106 IRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGC-G--SQIQFWDWRN---KKQVACLE--ESHVEDVTQVHFV  176 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~---~~~~~~~~--~~~~~~v~~~~~~  176 (389)
                      -.+||+.+++... +... ..-..+-.+.++|..+.++|. +  ..+++++...   ........  ......--+....
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            4688988765532 2222 222333456778888887776 3  4688888654   11111100  0123334455667


Q ss_pred             cCCCCeEEEEeCCCc-EEEEecCCCCCCCccceeee----ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          177 PNNQNKVVSASVDGL-ICTFDTGGDINDDDLLESVI----NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       177 ~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      |+|+ .|+.|+...- ..+|.-............+.    .......-..|.-++|++++.+..+.  .|||..+.+.++
T Consensus       127 ~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 PDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            8896 8887776643 33444321110000000000    11122222333337888887776543  367988887777


Q ss_pred             Eeecc
Q 016457          252 SFENA  256 (389)
Q Consensus       252 ~~~~~  256 (389)
                      .+...
T Consensus       204 ~lP~l  208 (243)
T PF07250_consen  204 TLPDL  208 (243)
T ss_pred             eCCCC
Confidence            76643

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.63  E-value=32  Score=31.41  Aligned_cols=61  Identities=3%  Similarity=-0.158  Sum_probs=35.3

Q ss_pred             CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ...+.|+|. +++.+|++--..|.|++++..++.... +........    .........++++|+-
T Consensus        30 ~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~----~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVN----DAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceee-eecCCceec----cCCCCceeeEEECCCc
Confidence            456788998 677666555446999999865543211 111110000    0023678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>smart00564 PQQ beta-propeller repeat

Probab=84.44  E-value=2.8  Score=21.58  Aligned_cols=27  Identities=4%  Similarity=-0.006  Sum_probs=22.0

Q ss_pred             CCeEEEeecCCeEEEEECcCCceeeee
Q 016457          136 TDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus       136 ~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      ++.+++++.+|.+..+|.++++.+.++
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            457888888999999999998877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.36  E-value=6.4  Score=26.22  Aligned_cols=50  Identities=14%  Similarity=0.116  Sum_probs=36.6

Q ss_pred             CCCeEEEEecCceeeeeecCcceEEEeecCCCCeEEEEec-CCeEEEEeCC
Q 016457           19 NVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPV   68 (389)
Q Consensus        19 ~~~~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~   68 (389)
                      .-+.|..|+.++......+-..-+.+.++|++++|.+++. .+.|++|..+
T Consensus        34 ~~~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   34 PWGNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3467778887665544444556678999999998888765 6789998754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.11  E-value=25  Score=29.74  Aligned_cols=92  Identities=10%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             CCeEEEEecCc-eeeeeec--CcceEEEeecCCCCeEEEEe------cCCeEEEEeCCCceeeeeecC-----CCCcEEE
Q 016457           20 VNSIKRFGLKN-SIQTNFG--DDYVFEIVPKNDWSLMAVSL------STNVVKLYSPVTGQYSGECKG-----HSSTVNQ   85 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~   85 (389)
                      -..|.+||... ....+-.  .+.|++|.|..+.++++.|.      ....+..||+.+.. ...+.+     -.++|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            35689999753 3333333  78999999997766777664      24578889987653 223332     2467888


Q ss_pred             EEEeCCCCCCEEEEEe-cCC--eEEEEEcc
Q 016457           86 ISFSGPSTPHVLHSCS-SDG--TIRAWDTR  112 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~-~dg--~i~iwd~~  112 (389)
                      +.+......++.+.|. .++  .|..||=.
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            8875444324554544 233  35555533

>smart00564 PQQ beta-propeller repeat

Probab=84.01  E-value=2.9  Score=21.52  Aligned_cols=25  Identities=12%  Similarity=0.038  Sum_probs=20.6

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeee
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGEC   76 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~   76 (389)
                      .+++++.+|.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6777888999999999998877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.84  E-value=48  Score=32.89  Aligned_cols=158  Identities=13%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             CcceEEEeec---C----CCCeEEEEecCCeEEEEeCCCc---------------eeeeeecC---CCCcEEEEEEeCCC
Q 016457           38 DDYVFEIVPK---N----DWSLMAVSLSTNVVKLYSPVTG---------------QYSGECKG---HSSTVNQISFSGPS   92 (389)
Q Consensus        38 ~~~v~~~~~~---~----~~~~l~~~~~d~~i~iw~~~~~---------------~~~~~~~~---~~~~v~~i~~~~~~   92 (389)
                      ..+|..|+|.   .    ..++|++=. ...+.|+...-.               .++..+..   -..+..+++|+|..
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            6788888887   2    223555544 567777772211               22233321   23467889999977


Q ss_pred             CCCEEEEEecCCeEEEEEccCC----eEEEEEE-cCC----------CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSF----HEVWSVT-AGS----------QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      . ..||.....|.-.||++...    .....+. ...          +.-..+.|.++-+.|+++.. ..+.++|+++..
T Consensus       158 ~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~  235 (765)
T PF10214_consen  158 Q-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW  235 (765)
T ss_pred             c-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence            5 69999999999999999211    1111111 111          22336778767777777765 788899998776


Q ss_pred             eee-eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          158 QVA-CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       158 ~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                      ... .........|..+.-+|..++.++.-+ ...|...|+..
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            533 222134567888888888443444443 36788888885

These proteins are found in fungi.

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=83.79  E-value=3.9  Score=20.26  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEe
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYS   66 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~   66 (389)
                      +.|.+++..+.  +++++.+.+.+|+|+
T Consensus         2 E~i~aia~g~~--~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGDS--WVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence            45778887664  889999889999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.89  E-value=4.6  Score=21.80  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=24.1

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcC
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAG  123 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~  123 (389)
                      .++.++.+|.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566699999999999999999998864

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.75  E-value=4.1  Score=22.00  Aligned_cols=26  Identities=8%  Similarity=-0.032  Sum_probs=22.7

Q ss_pred             eEEEeecCCeEEEEECcCCceeeeee
Q 016457          138 YLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus       138 ~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      .+++++.+|.|.-.|.++|+.+..+.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            56777789999999999999998887

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=82.35  E-value=8.7  Score=36.98  Aligned_cols=141  Identities=12%  Similarity=0.147  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCCeEEEEecCc-----eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCC-----Cceeeeee
Q 016457            9 QSQPKSQSCDNVNSIKRFGLKN-----SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV-----TGQYSGEC   76 (389)
Q Consensus         9 ~~~~~~~s~~~~~~i~~w~~~~-----~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-----~~~~~~~~   76 (389)
                      .+.|....+..++.|.++....     .......  ...+.++.+++.  .+..|.-||++-.|--.     .+++-..+
T Consensus       545 s~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~  622 (925)
T KOG3522|consen  545 SPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISI  622 (925)
T ss_pred             CCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCcccc
Confidence            3455666677888999987641     1111111  566777777654  24445555555444211     02222333


Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAGCGSQIQFWDW  153 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  153 (389)
                      ..-..+|...++..+     ++-++.+|.|.++...+....+....|   ...|+++.+. +.+..++-.....+++++.
T Consensus       623 ~~g~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~-~~gVwvafasG~~~rlfht  696 (925)
T KOG3522|consen  623 PTGSLPVRSLAFQED-----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYL-DNGVWVAFASGDEERLFHT  696 (925)
T ss_pred             ccCCccccchhhhhc-----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEee-CCceEEEEcCCCEEEEecc
Confidence            334567888888643     455667899999998877666555544   5789999987 4455544444456666665


Q ss_pred             cCCc
Q 016457          154 RNKK  157 (389)
Q Consensus       154 ~~~~  157 (389)
                      ++..
T Consensus       697 etl~  700 (925)
T KOG3522|consen  697 ETLW  700 (925)
T ss_pred             cccC
Confidence            5543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=81.88  E-value=61  Score=32.64  Aligned_cols=175  Identities=13%  Similarity=0.163  Sum_probs=95.4

Q ss_pred             eEEEEEccCCeEEEEEEcCC----CCeEEEEEeCCCCe-EEEeec------------CCeEEEEECcCCceeeeeeeccc
Q 016457          105 TIRAWDTRSFHEVWSVTAGS----QEIFCFSFGGSTDY-LLAAGC------------GSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      .|++.|..+++.+..+....    -.+..+.|+..+.. +++++.            +|.++.|++-.......+.  |.
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--h~  931 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--HK  931 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee--ec
Confidence            48888888887776665432    34566667644433 333332            2446777654332222222  33


Q ss_pred             CCe--eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          168 EDV--TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       168 ~~v--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      ..+  .-.+..|... .+++| ....+++||+-..+...+...  ......|..+.+.   +..+++|.....+.++..+
T Consensus       932 T~~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~lLRk~e~--k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  932 TEIPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKKLLRKCEL--KFIPNRISSIQTY---GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             cCCCccceEEeccCC-EEEEe-cccEEEEeeCChHHHHhhhhh--ccCceEEEEEeec---ceEEEEeeccceEEEEEEe
Confidence            322  2346667765 55554 467899999984422111111  1135567777764   4567777766655554433


Q ss_pred             C-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          246 D-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      . .+.+..+....          -...++.+.+-..+   -++.+..=|.+.+-.+.
T Consensus      1005 ~~~n~l~~fadD~----------~pR~Vt~~~~lD~~---tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP----------VPRHVTALELLDYD---TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             cCCCeEEEEeCCC----------ccceeeEEEEecCC---ceeeccccCcEEEEECC
Confidence            2 34444554322          22456666655544   35666666777777654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.30  E-value=6.6  Score=21.17  Aligned_cols=30  Identities=10%  Similarity=0.177  Sum_probs=19.6

Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCC--CcEEEE
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVD--GLICTF  195 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~  195 (389)
                      ....-....|+|+|+.++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445677889999998555555555  665555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=81.15  E-value=40  Score=30.03  Aligned_cols=11  Identities=9%  Similarity=0.211  Sum_probs=7.6

Q ss_pred             eEEEEECcCCc
Q 016457          147 QIQFWDWRNKK  157 (389)
Q Consensus       147 ~i~iwd~~~~~  157 (389)
                      .+..||..+.+
T Consensus       107 ~v~~YD~~~n~  117 (376)
T PRK14131        107 DVYKYDPKTNS  117 (376)
T ss_pred             cEEEEeCCCCE
Confidence            47778877654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.92  E-value=42  Score=30.19  Aligned_cols=162  Identities=11%  Similarity=0.055  Sum_probs=88.7

Q ss_pred             CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee-eeeeecccC----Cee-EEEEecCCCCeEEEEeCCCcEEEE-ec
Q 016457          125 QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV-ACLEESHVE----DVT-QVHFVPNNQNKVVSASVDGLICTF-DT  197 (389)
Q Consensus       125 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~d~~i~i~-d~  197 (389)
                      ..+..+-..|+++.+.+-+. ..+.++++.+.... ..+.....+    .|+ .+..-.-+ .-+++++.||.|.-| |.
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCceeeeeee
Confidence            44556677888888877665 77888887654321 111101111    122 12222233 367888889988765 55


Q ss_pred             CCCC-CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          198 GGDI-NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       198 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      +... .....++.+.-...++..+.-. .+.+-+++-+..|++.++.....+.+-. ..            -...+.-++
T Consensus       299 r~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~------------~~~~~~~~~  364 (733)
T COG4590         299 RRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER------------AYQAPQLVA  364 (733)
T ss_pred             ecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceeh-hh------------hhcCcceee
Confidence            5321 1112222222222333333322 3345677778888888877544333321 11            113556688


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +||++.  ++++- ..|.|+++.+++...
T Consensus       365 ~Sp~~~--~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         365 MSPNQA--YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             eCcccc--hheee-cCCceEEEEecCCCC
Confidence            999988  66554 557899999887543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=80.42  E-value=38  Score=29.42  Aligned_cols=143  Identities=10%  Similarity=0.030  Sum_probs=83.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCe------EEEEeCCC--c--eee-----eeecCCCC--------cEEEEEEeCCCCC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNV------VKLYSPVT--G--QYS-----GECKGHSS--------TVNQISFSGPSTP   94 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~------i~iw~~~~--~--~~~-----~~~~~~~~--------~v~~i~~~~~~~~   94 (389)
                      -+.+..+.+.+++..+++.+++|.      +..+++..  +  ..+     ..+....+        ..-+|++.+++  
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g--   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG--   96 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC--
Confidence            466788999866656666677777      55555443  1  001     11111111        34478886676  


Q ss_pred             CEEEEEecC------CeEEEEEccCCeEEEEEE---------------cCCCCeEEEEEeCCCCeEEEeec-----CC--
Q 016457           95 HVLHSCSSD------GTIRAWDTRSFHEVWSVT---------------AGSQEIFCFSFGGSTDYLLAAGC-----GS--  146 (389)
Q Consensus        95 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~-----d~--  146 (389)
                      .++++.-.+      ..|..++.. |+.+..+.               ..+....+|+++|++..|+++..     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            577776666      678888866 65544431               12567889999999997777654     22  


Q ss_pred             e-------EEE--EECcC-Cceeeeee--e-c-----ccCCeeEEEEecCCCCeEE
Q 016457          147 Q-------IQF--WDWRN-KKQVACLE--E-S-----HVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       147 ~-------i~i--wd~~~-~~~~~~~~--~-~-----~~~~v~~~~~~~~~~~~l~  184 (389)
                      .       +++  ||..+ ++....+.  . .     ....++.+.+.++++ +|+
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLv  230 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLV  230 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEE
Confidence            1       444  45444 22222221  0 1     345678888888875 443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	389
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-11
2h9l_A	329	Wdr5delta23 Length = 329		1e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-08
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		3e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		3e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-05
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		1e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)
Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 11  ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 68
Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 69  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 126
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 184
Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 185 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 241 KLWDYSKGKCLKTY 254

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 119/254 (46%), Gaps = 12/254 (4%)
Query: 2   EMEAEESQSQPKSQSCDNVNSIKR--FGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLST 59
           E EA  +Q  P S +  +  +  +  + LK ++  +       +  P  +W  +A S + 
Sbjct: 9   ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW--LASSSAD 66
Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + +
Sbjct: 67  KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKT 124
Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           +   S  +FC +F   ++ +++      ++ WD +  K +  L  +H + V+ VHF   +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRD 182
Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
            + +VS+S DGL   +DT         L+++I+          F    K++   T   TL
Sbjct: 183 GSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 240 SIWDWKDGQNVASF 253
            +WD+  G+ + ++
Sbjct: 239 KLWDYSKGKCLKTY 252

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 36  PNGEW--LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 39  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 39  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 38  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 93
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 94  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 152
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 153 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 207
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTY 235

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 33  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 88
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 89  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 147
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 148 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 202
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTY 230

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 32  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 87
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 88  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 146
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 147 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 201
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTY 229

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 39  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 94
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 153
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 154 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 208
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTY 236

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 50  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 105
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 106 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 164
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 165 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 219
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 220 NGKYILAATLDNTLKLWDYSKGKCLKTY 247

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 29  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 84
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 85  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 143
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 144 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 198
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTY 226

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 34  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 89
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 90  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 148
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 149 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 203
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTY 231

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 33  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 88
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 89  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 147
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 148 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 202
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTY 230

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 36  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 36  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 36  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +    +  L  +
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T   TL +WD+  G+ + ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 10/208 (4%)
Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T
Sbjct: 36  PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKT 91
Query: 106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES 165
           ++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +    +  L  +
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL-PA 150
Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE 225
           H + V+ VHF   + + +VS+S DGL   +DT         L+++I+          F  
Sbjct: 151 HSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP 205
Query: 226 TNKHLWCLTHIETLSIWDWKDGQNVASF 253
             K++   T    L +WD+  G+ + ++
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTY 233

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78  GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTRS---FHEVWSVTAGSQEIFC 129
           GHS+ V  +++      H+LH     S + D  +  WDTRS         V A + E+ C
Sbjct: 227 GHSAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
            SF   ++++LA G   + +  WD RN K      ESH +++ QVH+ P+N+  + S+  
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 189 DGLICTFD 196
           D  +  +D
Sbjct: 341 DRRLNVWD 348

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78  GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTRS---FHEVWSVTAGSQEIFC 129
           GHS+ V  +++      H+LH     S + D  +  WDTRS         V A + E+ C
Sbjct: 227 GHSAVVEDVAW------HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
            SF   ++++LA G   + +  WD RN K      ESH +++ QVH+ P+N+  + S+  
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 189 DGLICTFD 196
           D  +  +D
Sbjct: 341 DRRLNVWD 348

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 50  WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLH-----SCSSDG 104
           W + AV     VV   +  TG        H++ V  +S+      H+LH     S + D 
Sbjct: 205 WDISAVPKEGKVVDAKTIFTG--------HTAVVEDVSW------HLLHESLFGSVADDQ 250
Query: 105 TIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVA 160
            +  WDTRS +      SV A + E+ C SF   ++++LA G   + +  WD RN K   
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
              ESH +++ QV + P+N+  + S+  D  +  +D
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78  GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
           GH++ V  +++      H+LH     S + D  +  WDTR   +     +V A + E+ C
Sbjct: 231 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
            SF   ++++LA G   + +  WD RN K      ESH +++ QV + P+N+  + S+  
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 189 DGLICTFD 196
           D  +  +D
Sbjct: 345 DRRLHVWD 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78  GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
           GH++ V  +++      H+LH     S + D  +  WDTR   +     +V A + E+ C
Sbjct: 229 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
            SF   ++++LA G   + +  WD RN K      ESH +++ QV + P+N+  + S+  
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 189 DGLICTFD 196
           D  +  +D
Sbjct: 343 DRRLHVWD 350

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 78  GHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAWDTR---SFHEVWSVTAGSQEIFC 129
           GH++ V  +++      H+LH     S + D  +  WDTR   +     +V A + E+ C
Sbjct: 233 GHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 130 FSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
            SF   ++++LA G   + +  WD RN K      ESH +++ QV + P+N+  + S+  
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 189 DGLICTFD 196
           D  +  +D
Sbjct: 347 DRRLHVWD 354

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
           L+AV+ S  ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ 
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 181
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
            T +   ++    G + E+    +    + +++ G    ++ W   +K+ +  ++ES+  
Sbjct: 182 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 239
Query: 169 DVTQVHFVPNNQNK 182
                 + PN  N+
Sbjct: 240 -----DYNPNKTNR 248

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
           L+AV+ S  ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ 
Sbjct: 82  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 140
Query: 112 RSFHEVW---SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
           ++   V     V     E+    +    + +++ G    ++ W   +K+ +  ++ES+  
Sbjct: 141 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 198
Query: 169 DVTQVHFVPNNQNK 182
                 + PN  N+
Sbjct: 199 -----DYNPNKTNR 207

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
           L+AV+ S  ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ 
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 145
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
            T +   ++    G + E+    +    + +++ G    ++ W   +K+ +  ++ES+  
Sbjct: 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 203
Query: 169 DVTQVHFVPNNQNK 182
                 + PN  N+
Sbjct: 204 -----DYNPNKTNR 212

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD- 110
           L+AV+ S  ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ 
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 144
Query: 111 -TRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
            T +   ++    G + E+    +    + +++ G    ++ W   +K+ +  ++ES+  
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 202
Query: 169 DVTQVHFVPNNQNK 182
                 + PN  N+
Sbjct: 203 -----DYNPNKTNR 211

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
           L+AV+ S  ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ 
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNI 144
Query: 112 RSFHEVW---SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
           ++   V     V     E+    +    + +++ G    ++ W   +K+ +  ++ES+  
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-- 202
Query: 169 DVTQVHFVPNNQNK 182
                 + PN  N+
Sbjct: 203 -----DYNPNKTNR 211

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 50  WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109
           +S+M  +     +K++   TG +    KGH+ +V  ISF    +  +L SCS+D TI+ W
Sbjct: 120 FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLW 177
Query: 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD 152
           D + F  + ++      +   S   + D++++A     I+ W+
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           + H+  V    FS       + SC +D T++ +   +  ++  + A   E+ C +F    
Sbjct: 619 RPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
            Y+       +++ WD    K V   +E H E V   HF  N  N ++ A+  G    F 
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFT-NKSNHLLLAT--GSNDFFL 732
Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
              D+N  +   ++     SV     F   ++ L   +   TL +WD +      S    
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCR-FSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 257 RSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
           R   S     +DV+  V  C +  +G+ + V        V  F ++  G
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIV---AAKNKVLLFDIHTSG 837

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           + H+  V    FS       + SC +D T++ +   +  ++  + A   E+ C +F    
Sbjct: 612 RPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
            Y+       +++ WD    K V   +E H E V   HF  N  N ++ A+  G    F 
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFT-NKSNHLLLAT--GSNDFFL 725
Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
              D+N  +   ++     SV     F   ++ L   +   TL +WD +      S    
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCR-FSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 257 RSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
           R   S     +DV+  V  C +  +G+ + V        V  F ++  G
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIV---AAKNKVLLFDIHTSG 830

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 80  SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEIFCFSFGGS 135
           SST++ ++F    TP +L + +S G ++ WD R       ++ S+T     + C     +
Sbjct: 191 SSTLHAVTFL--RTPEIL-TVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPN 247
Query: 136 TDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194
             +++A G     +  WD R       L ++H  ++ +VHF P+N   + + S DG +  
Sbjct: 248 QQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWH 307
Query: 195 FDTGGDINDDDLL 207
           +D   D+ +   L
Sbjct: 308 WDASTDVPEKSSL 320

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 61  VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
            VKL++   GQ      GHSS+VN ++F        + S S D T++ W+ R+   + ++
Sbjct: 244 TVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG--QTIASASDDKTVKLWN-RNGQLLQTL 299
Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
           T  S  ++  +F      + +A     ++ W+ RN + +  L   H   V  V F P+ Q
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTL-TGHSSSVWGVAFSPDGQ 357
Query: 181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF 222
             + SAS D  +  ++  G      LL+++    +SV  V F
Sbjct: 358 T-IASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAF 393

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           +GHS  V+ +  S  S      S S DGT+R WD  +          ++++   +F    
Sbjct: 83  RGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184
             +++      I+ W+     +    +ESH E V+ V F PN+ N ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           +GHS  V+ +  S  S      S S DGT+R WD  +          ++++   +F    
Sbjct: 60  RGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184
             +++      I+ W+     +    +ESH E V+ V F PN+ N ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	8e-20
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-06
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	7e-15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-13
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-12
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-10
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	6e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-12
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-10
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-09
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-12
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-12
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	3e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-12
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-10
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-05
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	3e-12
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-12
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-09
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-06
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	6e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-11
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	6e-06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-11
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	9e-11
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-07
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	5e-06
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-11
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	4e-11
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-11
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-11
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-09
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-08
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	5e-11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-08
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	3e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	5e-11
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-09
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-09
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	7e-11
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	8e-06
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	8e-05
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	7e-11
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	1e-05
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	8e-11
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	5e-10
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	5e-06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-10
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	9e-10
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	7e-08
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	6e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-10
3ow8_A	321	WD repeat-containing protein 61; structural genomi	9e-10
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-09
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-08
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-10
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-09
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	8e-07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	6e-04
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-10
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-09
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	7e-08
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-10
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-06
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-09
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-07
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-04
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-09
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	7e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-09
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-08
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-07
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-09
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	7e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-07
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-09
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-08
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	6e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-06
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-09
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-08
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	6e-06
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-05
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-09
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-06
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-09
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	7e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	6e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	9e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	7e-08
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-08
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	9e-08
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	5e-08
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-05
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-08
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-06
2pm7_B	297	Protein transport protein SEC13, protein transport	1e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-08
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	6e-08
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	3e-07
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	4e-07
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	6e-06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	8e-08
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	4e-04
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-07
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-07
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-07
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-06
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	5e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	9e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-06
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	6e-06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	3e-06
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	8e-05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	9e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	3e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-04

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 89.4 bits (222), Expect = 8e-20
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 16/163 (9%)

Query: 62  VKLYSPVTGQYSGEC-------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114
           + L+                   GH++ V  +++       +  S + D  +  WDTR+ 
Sbjct: 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTRNN 264

Query: 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRN-KKQVACLEESHVED 169
                  +V A + E+ C SF   ++++LA G   + +  WD RN K ++   E SH ++
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDE 323

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESV 210
           + QV + P+N+  + S+  D  +  +D    G+    +  E  
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 57  LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE 116
            + +  K       Q     +GH      +S++ P+    L S S D TI  WD  +  +
Sbjct: 158 YTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN-PNLNGYLLSASDDHTICLWDINATPK 216

Query: 117 VWSVTAGSQEIF----------CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL--EE 164
                  ++ IF           +     +    +     ++  WD RN          +
Sbjct: 217 -EHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSHTVD 274

Query: 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
           +H  +V  + F P ++  + + S D  +  +D
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWD 306

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 34/134 (25%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC--FSFGG 134
           + H   + Q+ +S P    +L S  +D  +  WD     E  S            F  GG
Sbjct: 318 ESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376

Query: 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194
                                          H   ++   + PN    + S S D ++  
Sbjct: 377 -------------------------------HTAKISDFSWNPNEPWIICSVSEDNIMQV 405

Query: 195 FDTGGDINDDDLLE 208
           +    ++ +D+  E
Sbjct: 406 WQMAENVYNDEEPE 419

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 34/120 (28%)

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD 137
            H   VN+  +  P    V+ + +    +  +D          +   Q            
Sbjct: 126 NHEGEVNRARYM-PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL------- 177

Query: 138 YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
                                       H ++   + + PN    ++SAS D  IC +D 
Sbjct: 178 --------------------------RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
           D   +A   +   ++++   TG+   + K H   V   +FS   +   + +CS+D  ++ 
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683

Query: 109 WDTRSFHEVWSVTAGSQEIFC--FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166
           WD+ +   V +    S+++ C  F+   +   L        ++ WD   K+    +   H
Sbjct: 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H 742

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
              V    F P+++  + S S DG +  +D 
Sbjct: 743 TNSVNHCRFSPDDE-LLASCSADGTLRLWDV 772

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
             +KL+     +      GH+++VN   FS      +L SCS+DGT+R WD RS +E  S
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSANERKS 780

Query: 120 VTAGSQEIF---------------CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164
           +      +                 +S  G     +     +++  +D      +A +  
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDK---IIVAAKNKVLLFDIHTSGLLAEIHT 837

Query: 165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
            H   +    F P +    V A     +  ++ 
Sbjct: 838 GHHSTIQYCDFSPYDH-LAVIALSQYCVELWNI 869

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 9/200 (4%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           + H+  V    FS       + SC +D T++ +   +  ++  + A   E+ C +F    
Sbjct: 612 RPHTDAVYHACFS--QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV-VSASVDGLICTF 195
            Y+       +++ WD    K V   +E H E V   HF   + + +  + S D  +  +
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728

Query: 196 DTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255
           D     N  +   ++     SV    F  + ++ L   +   TL +WD +      S   
Sbjct: 729 DL----NQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINV 783

Query: 256 ARSLASDSWTLDDVDYFVDC 275
            R   S     +DV+  V C
Sbjct: 784 KRFFLSSEDPPEDVEVIVKC 803

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 49   DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
            D +  + + +    K++S        E KGH+  V   +FS      +  +   +G IR 
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLA-TGDDNGEIRI 1153

Query: 109  WDTRSFHEVWSVTAGSQEIF-----------CFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157
            W+      + S    S E             CFS    T   L +  G  +++W+     
Sbjct: 1154 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT---LVSAGGY-LKWWNVATGD 1209

Query: 158  QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
                   ++  ++ ++H  P+ +   V+    G++     
Sbjct: 1210 SSQTF-YTNGTNLKKIHVSPDFR-TYVTVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 12/137 (8%)

Query: 60   NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHEV 117
              +K+      +      GH   V  I F+         L S S D  I+ W+ ++   V
Sbjct: 983  GAIKIIELPNNRVFSSGVGHKKAVRHIQFT----ADGKTLISSSEDSVIQVWNWQTGDYV 1038

Query: 118  WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFV 176
              + A  + +  F      D  L +      ++ W+    +        H   V      
Sbjct: 1039 -FLQAHQETVKDFRL--LQDSRLLSWSFDGTVKVWNVITGRIERDFTC-HQGTVLSCAIS 1094

Query: 177  PNNQNKVVSASVDGLIC 193
             +   K  S S D    
Sbjct: 1095 SDAT-KFSSTSADKTAK 1110

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 11/150 (7%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
              L  ++LS   V+L++  +     +C+GH S V+ + FS P     L + S D TIR 
Sbjct: 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFL-TASDDQTIRV 908

Query: 109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHV 167
           W+T+   +  ++    +    F    +    + A    + +Q    +  +          
Sbjct: 909 WETKKVCKNSAIVLKQEIDVVFQENETM---VLAVDNIRGLQLIAGKTGQID----YLPE 961

Query: 168 EDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
             V+     P+ +  V     DG I   + 
Sbjct: 962 AQVSCCCLSPHLE-YVAFGDEDGAIKIIEL 990

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
           D S +A   +   VK++   TG+       HS  VN   F+  S   +L + S+D  ++ 
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727

Query: 109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----- 163
           WD        ++   +  +    F    + L +      ++ WD R+  +   +      
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787

Query: 164 -------ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
                  E     V    +  +   K++ A+ + ++
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGD-KIIVAAKNKVL 822

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 55  VSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
           +  + N V L+   T     E   GH ST+    FS P     +    S   +  W+  S
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAV-IALSQYCVELWNIDS 871

Query: 114 FHEVWSVTAGSQEIFC--FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171
             +V         +    FS  GS+   L A     I+ W+ +   + + +      DV 
Sbjct: 872 RLKVADCRGHLSWVHGVMFSPDGSS--FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929

Query: 172 QVHFVPNNQNKVVSASVDGLICTFDT 197
              F  N    V++      +     
Sbjct: 930 ---FQENET-MVLAVDNIRGLQLIAG 951

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 13/140 (9%)

Query: 60   NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              ++L +  TGQ         + V+    S P   +V      DG I+  +  +     S
Sbjct: 944  RGLQLIAGKTGQ---IDYLPEAQVSCCCLS-PHLEYVA-FGDEDGAIKIIELPNNRVFSS 998

Query: 120  VTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
                 + +    F  + D   L+++   S IQ W+W+    V    ++H E V     + 
Sbjct: 999  GVGHKKAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKDFRLLQ 1054

Query: 178  NNQNKVVSASVDGLICTFDT 197
            +  ++++S S DG +  ++ 
Sbjct: 1055 D--SRLLSWSFDGTVKVWNV 1072

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 20/212 (9%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
             +  +L +  V++++  T       +   + V    F       ++   S D  IR ++
Sbjct: 26  PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI-ARKNWII-VGSDDFRIRVFN 83

Query: 111 TRSFHEVWSVTAGSQEIFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
             +  +V    A    I   +        Y+L+      ++ W+W N   +    E H  
Sbjct: 84  YNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141

Query: 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK 228
            V  V F P + +   S  +D  +  +  G    +  L          V  V ++   +K
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---GVNYVDYYPLPDK 198

Query: 229 HLWCLTHI------ETLSIWDWKDGQNVASFE 254
                 ++       T+ IWD++    VA+ E
Sbjct: 199 -----PYMITASDDLTIKIWDYQTKSCVATLE 225

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 62  VKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
           VKL++        +  +GH   V  ++F+ P  P    S   D T++ W        +++
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179

Query: 121 TAG-SQEIFC--FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
           T G  + +    +       Y++ A     I+ WD++ K  VA LE  H+ +V+   F P
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHP 238

Query: 178 NNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGT-SVGKVGFFGETNKHLWCLT 234
                ++S S DG +  ++  T         +E  +NVG      +       K+     
Sbjct: 239 -TLPIIISGSEDGTLKIWNSSTYK-------VEKTLNVGLERSWCIATHPTGRKNYIASG 290

Query: 235 HIETLSIWDWKDGQNVASFENARSLA 260
                ++    + +   S +    L 
Sbjct: 291 FDNGFTVLSLGNDEPTLSLDPVGKLV 316

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 31/222 (13%)

Query: 62  VKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------- 113
           VK++S      +     G    VN + +        + + S D TI+ WD ++       
Sbjct: 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224

Query: 114 ---FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV 170
                 V            F        +++      ++ W+    K    L    +E  
Sbjct: 225 EGHMSNVSFA--------VFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERS 273

Query: 171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDIN---DDDLLESVINVGTSVGKVGFFGETN 227
             +   P  +   +++  D        G D      D + + V + G +      F    
Sbjct: 274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVI 333

Query: 228 KHLWCLTHIETLSIWDWKDG------QNVASFENARSLASDS 263
           +    +   E LS+   + G      Q++A   N R +    
Sbjct: 334 RGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 26/127 (20%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HE--VWSVTAGSQE 126
              S  V  I F  P+ P VL +    G +  W+  +          E  V +       
Sbjct: 10  SNRSDRVKGIDFH-PTEPWVL-TTLYSGRVEIWNYETQVEVRSIQVTETPVRAG------ 61

Query: 127 IFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS 185
              F    +    +  G    +I+ +++   ++V   E  H + +  +   P     V+S
Sbjct: 62  --KFIARKNW---IIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKP-YVLS 114

Query: 186 ASVDGLI 192
            S D  +
Sbjct: 115 GSDDLTV 121

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 25/187 (13%)

Query: 73  SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVTAGSQEIFC 129
           + E       V ++ +SG    +   S      IR  +     E   + +   GS ++F 
Sbjct: 302 NDEPTLSLDPVGKLVWSGGK--NAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359

Query: 130 FSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187
            S   S +  ++   G G  + +     + +                + P++ N      
Sbjct: 360 QSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-------AFGKCQDFVWGPDS-NSYALID 411

Query: 188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG 247
             G I  +    ++       +  +V         F      L  +     +  +DW +G
Sbjct: 412 ETGQIKYYKNFKEV-------TSWSVPMHSAIDRLFS---GALLGVKSDGFVYFFDWDNG 461

Query: 248 QNVASFE 254
             V   +
Sbjct: 462 TLVRRID 468

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDG 104
           +  ++A +L    ++LYS      +         HSS+V  + F+     +VL S  ++G
Sbjct: 78  NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN-AKQDNVLASGGNNG 136

Query: 105 TIRAWDTRSFHEVWSVTAG---------SQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWR 154
            I  WD     E  S               E+   ++  S  ++ A+   S     WD +
Sbjct: 137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196

Query: 155 NKKQVACLEES-----HVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDT 197
            KK+V  L  +       + ++ V + P N  +V +A+    D  I  +D 
Sbjct: 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 59  TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118
               +  S  T    G+       V  ++++  S  HV  S  S      WD ++  EV 
Sbjct: 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKEVI 202

Query: 119 SVTAGSQEIF--------CFSFGGSTDYLLAAGCGSQ----IQFWDWRNKKQ-VACLEES 165
            ++  S             +    ST   +A   GS     I  WD RN    +  L + 
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNST--RVATATGSDNDPSILIWDLRNANTPLQTLNQG 260

Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           H + +  + +   +++ ++S+  D  + 
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVL 288

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 34/182 (18%)

Query: 58  STNVVKLYSPVTGQ------YSGECKGHSSTVNQISFSGPSTPHVLHSCS---SDGTIRA 108
           S+N   ++     +      Y+    G    ++ + +  P     + + +   +D +I  
Sbjct: 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH-PKNSTRVATATGSDNDPSILI 244

Query: 109 WDTRSF----------HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK 156
           WD R+           H+  + S+         +        LL++G  + +  W+  + 
Sbjct: 245 WDLRNANTPLQTLNQGHQKGILSL--------DWCHQDE-HLLLSSGRDNTVLLWNPESA 295

Query: 157 KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC--TFDTGGDINDDDLLESVINVG 214
           +Q++    +      +  F P   +    AS D  I   T     +  D+   E+     
Sbjct: 296 EQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354

Query: 215 TS 216
            +
Sbjct: 355 ET 356

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 62  VKLYSPVTGQYSGECKGHS--STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----FH 115
           ++L+S +              S  N + +S  +   ++     +G++  + T       +
Sbjct: 47  LELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK--IIAGALDNGSLELYSTNEANNAIN 104

Query: 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE--------ESH 166
            +   +  S  +    F    D +LA+G    +I  WD     +              S 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLI 192
           V++V  + +  +  +   SA      
Sbjct: 165 VDEVISLAWNQSLAHVFASAGSSNFA 190

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 28/215 (13%), Positives = 54/215 (25%), Gaps = 58/215 (26%)

Query: 78  GHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF------------HEVWSVTAG 123
            H      +S +        V  + S+D ++  W   +              +   +   
Sbjct: 21  SHDKIPLLVSGT----VSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDL--- 73

Query: 124 SQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE---ESHVEDVTQVHFVPNN 179
                 +S        +A    +  ++ +                +H   V  V F    
Sbjct: 74  -----DWSHNNKI---IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ 125

Query: 180 QNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL---- 233
            N + S   +G I  +D     +   +    +     +SV +V            L    
Sbjct: 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV----------ISLAWNQ 175

Query: 234 --THI-------ETLSIWDWKDGQNVASFENARSL 259
              H+          SIWD K  + V         
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 9/125 (7%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--TRSFHEVWSVTAGSQEIFCFSFGG 134
            G    +  + F+     + L   S  G     D             +      C     
Sbjct: 115 MGPGDAITGMKFN-QFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV-- 171

Query: 135 STDY-LLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
           S    +LA G  +  +        +     E+ H   VT   F P     + ++SVD  +
Sbjct: 172 SVSRQMLATGDSTGRLLLLGLDGHEIFK--EKLHKAKVTHAEFNPRCDWLMATSSVDATV 229

Query: 193 CTFDT 197
             +D 
Sbjct: 230 KLWDL 234

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 20/201 (9%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF 128
             Q   +          +  S   +  +L +  S G +        HE++       ++ 
Sbjct: 152 VIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGLDG-HEIFKEKLHKAKVT 208

Query: 129 CFSFGGSTD--YLLAAGCGSQ-IQFWDWRNKKQVACL--EESHVEDVTQVHFVPNNQNKV 183
              F  +    +L+A       ++ WD RN K       E  H + V   +F P +  K+
Sbjct: 209 HAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL 266

Query: 184 VSASVDGLICTFDTG---------GDINDDDLLESVINVGTS-VGKVGFFGETNKHLWCL 233
           ++      I  + +             +      + I      +  +   G        L
Sbjct: 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLL 326

Query: 234 THIETLSIWDWKDGQNVASFE 254
               T+ I+D   G  V    
Sbjct: 327 NDKRTIDIYDANSGGLVHQLR 347

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 8/177 (4%)

Query: 27  GLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI 86
           G K   QT+         + ++  + +   L      + S  + +           V  +
Sbjct: 22  GQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQE--PFIRSLKSYKLHRTASPFDRRVTSL 79

Query: 87  SFSGPSTPHVLHSCSSDGTIRAWD--TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC 144
            +  P+ P  +   S  G I  WD   ++             I    F       L    
Sbjct: 80  EWH-PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138

Query: 145 G-SQIQFWDW-RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199
                   D+  +  QV    +S       V    + Q  + +    G +      G
Sbjct: 139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG 194

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 31/163 (19%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
              ++A   ST  + L      +   E K H + V    F+ P    ++ + S D T++ 
Sbjct: 174 SRQMLATGDSTGRLLLLGLDGHEIFKE-KLHKAKVTHAEFN-PRCDWLMATSSVDATVKL 231

Query: 109 WDTRSF-----------HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWR 154
           WD R+            HE  V +          F+   ST   L        I+ +   
Sbjct: 232 WDLRNIKDKNSYIAEMPHEKPVNAA--------YFNPTDST--KLLTTDQRNEIRVYSSY 281

Query: 155 NKKQVACLE-----ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
           +  +   +      +       +  + P     V     D  +
Sbjct: 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL 324

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 19/214 (8%)

Query: 52  LMAVSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           L  V     N     S  +G   GE  GHS  +N       S P    +   DG++  + 
Sbjct: 131 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQ 189

Query: 111 TRSFHEVWSV---TAGSQEIFCFSFGGSTDY--LLAAGCG-SQIQFWDWRNKKQVACLEE 164
              F    S          +    F  S D    +       +I  +D ++ + +  +E+
Sbjct: 190 GPPFKFSASDRTHHKQGSFVRDVEF--SPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247

Query: 165 SHVEDVTQVHFVPNNQN--KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVG--KV 220
              E V    F  +  +  K  +   D  I  +    D+     ++        +G  +V
Sbjct: 248 -DQEPVQGGIFALSWLDSQKFATVGADATIRVW----DVTTSKCVQKWTLDKQQLGNQQV 302

Query: 221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254
           G     N  +  L+   TL+ ++    + + +  
Sbjct: 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 18/157 (11%)

Query: 56  SLSTNVVKLYSPVTGQYSG--ECKGH-SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112
              +  V+       +     +  GH SS V  + FS       L S    G +  W   
Sbjct: 37  CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96

Query: 113 SFHEVWSVTAGSQEIF----------CFSFGGSTDYLLAAGCGSQ--IQFWDWRNKKQVA 160
              E  SV    +  F           + F G    L   G G      F  W +   + 
Sbjct: 97  FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR--LCVVGEGRDNFGVFISWDSGNSLG 154

Query: 161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
            +   H + +   H   +   + ++   DG +  +  
Sbjct: 155 EVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 21/150 (14%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS---- 113
            V KL                +  + IS S    P    + +    G I  +D +S    
Sbjct: 470 QVFKLSDLEVSFDLKT--PLRAKPSYISIS----PSETYIAAGDVMGKILLYDLQSREVK 523

Query: 114 -----FHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166
                F    + +++    E          D +      + I  +  +   ++     +H
Sbjct: 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
            + V  + +     + +VS+  D  I  ++
Sbjct: 584 KDGVNNLLWETP--STLVSSGADACIKRWN 611

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 26/219 (11%), Positives = 61/219 (27%), Gaps = 42/219 (19%)

Query: 62  VKLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
           ++++   T +   +           Q+         ++ S S DGT+  ++      + +
Sbjct: 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYELGHDEVLKT 334

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
           ++  ++ I   +   +   L++     +I  W   +        + H   +  +      
Sbjct: 335 ISGHNKGITALTV--NP--LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKAQ 384

Query: 180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL 239
           +    S S D  +                   +   S  KV      +     LT+ + L
Sbjct: 385 E--YSSISWDDTLKVNGITK------------HEFGSQPKVASAN-NDGFTAVLTNDDDL 429

Query: 240 SIWDWKDGQNVASFE--------------NARSLASDSW 264
            I     G  + S                 A  L   + 
Sbjct: 430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 468

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 16/153 (10%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKGHSS-TVNQISFSGPSTPHVLHSCSSDGTIRAW 109
              AV  + + + +    TG      + +S  +   +S +  +    L   ++    +  
Sbjct: 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV--GLEEGNTIQVFKLS 475

Query: 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVE 168
           D     ++ +           S   +    +AAG     I  +D ++++           
Sbjct: 476 DLEVSFDLKTPLRAKPSYISISPSETY---IAAGDVMGKILLYDLQSREVKTSRWAFRTS 532

Query: 169 DVTQVHFVPNNQNK---------VVSASVDGLI 192
            +  + + P  +           V + S+D  I
Sbjct: 533 KINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 59  TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118
                ++   TG  +G   G +  +N + F  PS P  + S S D T+  ++   F    
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKS 184

Query: 119 SVTAGSQEIFC--FSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES------HVED 169
           +    ++ +    ++  GS     A+  G   I  ++  +  +    E+       H   
Sbjct: 185 TFGEHTKFVHSVRYNPDGSL---FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDT 197
           V  + + P+   K+ SAS D  I  ++ 
Sbjct: 242 VFGLTWSPDGT-KIASASADKTIKIWNV 268

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 62  VKLYSPVTGQYSGE-------CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114
           + LY+ V G  +G           HS +V  +++S P    +  S S+D TI+ W+  + 
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIA-SASADKTIKIWNVATL 271

Query: 115 HEVWSVTAGSQEIF---CFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDV 170
               ++  G++         +       L +   +  I F +             H + +
Sbjct: 272 KVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINFVNPELGSIDQVR-YGHNKAI 327

Query: 171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217
           T +    + +  + SA  +G I ++D    I++    +    + T +
Sbjct: 328 TALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 32/167 (19%)

Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT 105
           P  D        S   V + S    +       HS        S PS  +   S    G 
Sbjct: 28  PAGDKIQYCNGTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTS-PSGYYCA-SGDVHGN 82

Query: 106 IRAWDTRSFHE------------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ---IQF 150
           +R WDT                 V  +         +         +AA    +      
Sbjct: 83  VRIWDTTQTTHILKTTIPVFSGPVKDI--------SWDSESKR---IAAVGEGRERFGHV 131

Query: 151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
           + +        L       +  V F P+   +++S S D  +  F+ 
Sbjct: 132 FLFDTGTSNGNLTG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 62  VKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
           +K+++  T +       G      Q+      T   L S S++G I   +          
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGII--WTKQALVSISANGFINFVNPELGSIDQVR 320

Query: 121 TAGSQEIFC--FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN 178
              ++ I     S  G T  L +A     I  WD           + H   +T +     
Sbjct: 321 YGHNKAITALSSSADGKT--LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378

Query: 179 NQNKVVSASVDGLICTFDTGGD 200
               + + S D  +     GG 
Sbjct: 379 --GDLFTVSWDDHLKVVPAGGS 398

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 32/163 (19%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIR 107
             +AV    + V +Y       S      H + +  ++FS         L +      + 
Sbjct: 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS----NNGAFLVATDQSRKVI 516

Query: 108 AWDTRS-----------FHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR 154
            +   +           FH   V  V         +S       L      + +  W+  
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACV--------SWSPDNV--RLATGSLDNSVIVWNMN 566

Query: 155 NKKQVACL-EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
                  + + +H           N    +VSA  D  I  ++
Sbjct: 567 KPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 608

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 13/150 (8%)

Query: 55  VSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
           VS+S    +   +P  G       GH+  +  +S S  +    L S  ++G I +WD  +
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSS--ADGKTLFSADAEGHINSWDIST 355

Query: 114 FHEVWSVTAGSQEI---FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVE 168
                        +      +  G    L        ++          +          
Sbjct: 356 GISNRVFPDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412

Query: 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTG 198
               +    +    +  A+    I  +  G
Sbjct: 413 QPLGLAVSADGD--IAVAACYKHIAIYSHG 440

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 27/138 (19%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------- 114
           ++++    G+     +GH++ V  +  S       L S ++DG+IR WD   +       
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDYSRKFSYH 389

Query: 115 --HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ 172
             +              F    +    L +G  +Q   ++ R+ K V        + +  
Sbjct: 390 HTNLSAIT--------TFYVSDNI---LVSGSENQFNIYNLRSGKLVHANILKDADQIWS 438

Query: 173 VHFVPNNQNKVVSASVDG 190
           V+F       +V+A    
Sbjct: 439 VNF---KGKTLVAAVEKD 453

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 9/128 (7%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++++Y  +  ++  +  GH   V  + ++       L S S+D T+R WD +       
Sbjct: 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI---LVSGSTDRTVRVWDIKKGCCTHV 198

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLEESHVEDVTQVHFV 176
               +  + C       +       GS+   +  W    +  V   +     D   V   
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIV-TGSRDNTLHVWKLPKESSVP--DHGEEHDYPLVFHT 255

Query: 177 PNNQNKVV 184
           P      V
Sbjct: 256 PEENPYFV 263

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 30/140 (21%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHEVW 118
              + G  +GH ++V  +S  G    +++ S S D T+  WD                ++
Sbjct: 259 NPYFVGVLRGHMASVRTVSGHG----NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314

Query: 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVP 177
           S          +           +      I+ WD  N + +  L+  H   V  +    
Sbjct: 315 ST--------IYDHERKR---CISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSD 362

Query: 178 NNQNKVVSASVDGLICTFDT 197
                +VSA+ DG I  +D 
Sbjct: 363 ---KFLVSAAADGSIRGWDA 379

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 54/219 (24%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HE--VW 118
                   +GH ++V        +    + + + D  IR +D+ +         H+  VW
Sbjct: 110 FVPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVW 166

Query: 119 SVTAGSQEIFCFSFG-----GSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT-- 171
           ++         ++ G     GSTD          ++ WD +         E H   V   
Sbjct: 167 AL--------KYAHGGILVSGSTD--------RTVRVWDIKKGCCTHVF-EGHNSTVRCL 209

Query: 172 QVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGET--- 226
            +    N +  +V+ S D  +  +       + D         V  +  +  +F      
Sbjct: 210 DIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268

Query: 227 -NKHLWCL----THI------ETLSIWDWKDGQNVASFE 254
               +  +      +       TL +WD    + +    
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE--IFCFSFGG 134
               S               L    +   ++ W    F    +   G     I C  F  
Sbjct: 75  NLKLSQKYPKLSQ--QDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFED 132

Query: 135 STDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD 189
           +    +  G   + I+ +D  NKK +  L   H   V  + +       +VS S D
Sbjct: 133 NY---VITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG--GILVSGSTD 182

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 10/152 (6%)

Query: 48  NDWSLMAVSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI 106
           ++  L     +    +     +          + + +            ++ + S DG I
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI-AASWDGLI 124

Query: 107 RAWDTRSFHEVWSVTAGSQEIF------CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA 160
              D R++ +                   F+   ++  L+     SQ+Q++     +   
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 161 CLEE--SHVEDVTQVHFVPNNQNKVVSASVDG 190
              E       +  V  +P  Q     +S+DG
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 82  TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDY 138
            ++ I    PS   +L   S DG++  +      +   +         + C +F  +TD 
Sbjct: 13  YISDIKII-PSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 139 LLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
            +  G    +I   D         L   +  ++          +K+++AS DGLI   D 
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 198 GGDINDDDLLESVINVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV 250
               +    ++++ +  T V  K+      +  L    +   +  +     ++ 
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 36/263 (13%), Positives = 82/263 (31%), Gaps = 31/263 (11%)

Query: 127 IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE--SHVEDVTQVHFVPNNQNKVV 184
           I       S   LL       +  + +  + +   L +   +   +   +F+ N   ++ 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW 244
             +V G I   D  G  +   L  +      ++G        +  L   +    + + D 
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNN----EANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
           ++  +       ++L S++  + +  + +D +         +I G     V +F +    
Sbjct: 130 RNYGDGVIAV--KNLNSNNTKVKNKIFTMDTNSSR------LIVGMNNSQVQWFRLPLCE 181

Query: 305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEI 364
                    +   G    +R V  +P       +  G        DGR+     DD    
Sbjct: 182 D----DNGTIEESGLKYQIRDVALLPK------EQEGY--ACSSIDGRVAVEFFDDQ--- 226

Query: 365 NRSWISNAMVMRSPKTHKKNRHN 387
                 N+    + + H+ N  +
Sbjct: 227 --GDDYNSSKRFAFRCHRLNLKD 247

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 19/138 (13%), Positives = 53/138 (38%), Gaps = 14/138 (10%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
             ++++   TG       GH S  + +        ++L S ++D T++ WD ++   + +
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQCLQT 354

Query: 120 VTAGSQ---EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL----EESHVEDVTQ 172
           +   ++    + C  F  + ++++ +     ++ WD +  + +  L           V +
Sbjct: 355 LQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412

Query: 173 VHFVPNNQNKVVSASVDG 190
           +             S +G
Sbjct: 413 IRASNTKL-VCAVGSRNG 429

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           ++++   TGQ      GH + V  + + G      + S + D  ++ WD  +   + ++ 
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDG----RRVVSGAYDFMVKVWDPETETCLHTLQ 276

Query: 122 AGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ 180
             +  ++   F G     + +G   + I+ WD      +  L   H    + +       
Sbjct: 277 GHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKD--- 329

Query: 181 NKVVSASVDGLICTFDT 197
           N +VS + D  +  +D 
Sbjct: 330 NILVSGNADSTVKIWDI 346

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 26/145 (17%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
             + +      N +K++S VTG+      GH+  V           +++ S S+D T++ 
Sbjct: 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKV 183

Query: 109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
           W+  +   + ++   +  + C         +++    + ++ WD    + +  L   HV 
Sbjct: 184 WNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVA 240

Query: 169 DVTQVHFVPNNQNKVVSASVDGLIC 193
            V  V +   +  +VVS + D ++ 
Sbjct: 241 AVRCVQY---DGRRVVSGAYDFMVK 262

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           VK++ P T       +GH++ V  + F G      + S S D +IR WD  + + + ++T
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDG----IHVVSGSLDTSIRVWDVETGNCIHTLT 316

Query: 122 AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNN 179
                          + L++    S ++ WD +  + +  L+    H   VT + F    
Sbjct: 317 GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-- 372

Query: 180 QNKVVSASVDGLI 192
            N V+++S DG +
Sbjct: 373 -NFVITSSDDGTV 384

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 9/136 (6%)

Query: 58  STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
             N++                    V +  F    +P              W        
Sbjct: 54  EDNLLWREKCKEEGIDEPLHIKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSP 111

Query: 118 WSVTAGSQEIF-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV 176
             +      +  C  F G  + +++    + ++ W     K +  L   H   V      
Sbjct: 112 KVLKGHDDHVITCLQFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR 168

Query: 177 PNNQNKVVSASVDGLI 192
               N ++S S D  +
Sbjct: 169 D---NIIISGSTDRTL 181

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 66.8 bits (162), Expect = 3e-12
 Identities = 26/272 (9%), Positives = 69/272 (25%), Gaps = 20/272 (7%)

Query: 28  LKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY-SGECKGHSSTVNQI 86
            +    T    D +         + +        V  +     +  S   + H S +  +
Sbjct: 255 CEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314

Query: 87  SFSGPST-PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS--FGGSTDYLLAAG 143
           S +       V+ + + DG    ++ +      +  +  +        +       + + 
Sbjct: 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374

Query: 144 CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND 203
             S ++    R    V  L       +T +     +   V++ S DG +   +    +  
Sbjct: 375 GASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLH 432

Query: 204 DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS 263
                S       + K  +  + +K  + +     +      D        +  ++    
Sbjct: 433 GIKNSSATQKSLRLWKWDYSIKDDK--YRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK 490

Query: 264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295
           W                           AG +
Sbjct: 491 WN------------ETSAGGKCYAFSNSAGLL 510

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 16/135 (11%)

Query: 79  HSSTVNQISFS----GPSTPHVLHSCSSDGTIRAWD---------TRSFHEVWSVTAGSQ 125
               V  + +      P     L   S +GTI   +              E  S+T    
Sbjct: 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265

Query: 126 EIFCFSFGGSTDYLLAAGCGS-QIQFWDWRNKKQVACLEESHVEDVTQVHFVPN--NQNK 182
           +    +F   +   +  G  +  +  +D  + +  +  ++ H   +  V    +      
Sbjct: 266 DSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV 325

Query: 183 VVSASVDGLICTFDT 197
           V + +VDG    F+ 
Sbjct: 326 VSTVAVDGYFYIFNP 340

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           +K++    G++     GH   ++ +++S  S   +L S S D T++ WD  S   + ++ 
Sbjct: 47  IKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVSSGKCLKTLK 104

Query: 122 AGSQEIFCFSFGGSTD-YLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
             S  +FC +F  +    L+ +G   + ++ WD +  K +  L  +H + V+ VHF  + 
Sbjct: 105 GHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDG 161

Query: 180 QNKVVSASVDGLI 192
              +VS+S DGL 
Sbjct: 162 S-LIVSSSYDGLC 173

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 26/145 (17%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE----- 116
           V+++   TG+       HS  V+ + F+   +  ++ S S DG  R WDT S        
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLI 188

Query: 117 ------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVE 168
                 V  V         FS  G   Y+LAA   + ++ WD+   K +      ++   
Sbjct: 189 DDDNPPVSFV--------KFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238

Query: 169 DVTQVHFVPNNQNKVVSASVDGLIC 193
            +     V   +  +VS S D L+ 
Sbjct: 239 CIFANFSVTGGK-WIVSGSEDNLVY 262

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 77  KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF--------HE--VWSVTAGS 124
            GH+  V+ + FS    P    L S S+D  I+ W             H+  +  V    
Sbjct: 20  AGHTKAVSSVKFS----PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71

Query: 125 QEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183
                +S   +    L +    + ++ WD  + K +  L+  H   V   +F P +   +
Sbjct: 72  ----AWSSDSNL---LVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSN-LI 122

Query: 184 VSASVDGLIC 193
           VS S D  + 
Sbjct: 123 VSGSFDESVR 132

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHEVWS 119
           +KL+    G+      GH +    I  +  S      + S S D  +  W+ ++   V  
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFAN-FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274

Query: 120 VTAGSQEIFCFSF 132
           +   +  +   + 
Sbjct: 275 LQGHTDVVISTAC 287

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 24/142 (16%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------- 114
           +K++   TG +    KGH+ +V  ISF       +L SCS+D TI+ WD + F       
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRTMH 189

Query: 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171
              H V SV             G  D++++A     I+ W+ +    V      H E V 
Sbjct: 190 GHDHNVSSV--------SIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVR 238

Query: 172 QVHFVPNNQNKVVSASVDGLIC 193
            V    +    + S S D  + 
Sbjct: 239 MVRPNQDGT-LIASCSNDQTVR 259

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 24/156 (15%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           +K++   TG       GH   V  +  +      +  SCS+D T+R W   +        
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIA-SCSNDQTVRVWVVATKECKAELR 273

Query: 114 --FHEVWSV----------TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC 161
              H V  +           + +        G    +LL+      I+ WD      +  
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333

Query: 162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
           L   H   V  V F    +  ++S + D  +  +D 
Sbjct: 334 LVG-HDNWVRGVLFHSGGK-FILSCADDKTLRVWDY 367

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 30/129 (23%)

Query: 77  KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS----------FHEVWSVTAGS 124
            GH S V ++ F     P   V+ S S D TI+ WD  +             V  +    
Sbjct: 105 SGHRSPVTRVIFH----PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI---- 156

Query: 125 QEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183
                F   G     LA+      I+ WD++  + +  +   H  +V+ V  +PN    +
Sbjct: 157 ----SFDHSGKL---LASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGD-HI 207

Query: 184 VSASVDGLI 192
           VSAS D  I
Sbjct: 208 VSASRDKTI 216

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           +K++   TG       GH + V  + F       +L SC+ D T+R WD ++   + ++ 
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFIL-SCADDKTLRVWDYKNKRCMKTLN 377

Query: 122 AGSQEIFCFSF 132
           A    +    F
Sbjct: 378 AHEHFVTSLDF 388

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 24/148 (16%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
             L+   +GQ      GH + V  +  +   T +   S   D     WD RS        
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237

Query: 114 --FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE-ESHVED 169
               +V SV         +   G      A+G      + +D R  ++VA    ES +  
Sbjct: 238 THESDVNSV--------RYYPSGDA---FASGSDDATCRLYDLRADREVAIYSKESIIFG 286

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDT 197
            + V F  + +  + +   D  I  +D 
Sbjct: 287 ASSVDFSLSGR-LLFAGYNDYTINVWDV 313

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT------RS 113
            +    +            H++ ++  SF+  S   +L + S DGT   WD       +S
Sbjct: 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQIL-TASGDGTCALWDVESGQLLQS 191

Query: 114 FH----EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED 169
           FH    +V  +          +   + +  ++ GC  +   WD R+ + V   E  H  D
Sbjct: 192 FHGHGADVLCL--------DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESD 242

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDT 197
           V  V + P+      S S D     +D 
Sbjct: 243 VNSVRYYPSGD-AFASGSDDATCRLYDL 269

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 18/149 (12%), Positives = 36/149 (24%), Gaps = 32/149 (21%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------- 114
           V ++   T           + V   +++ PS   +      D     +            
Sbjct: 88  VIVWDSFTTNKEHAVTMPCTWVMACAYA-PSGCAIA-CGGLDNKCSVYPLTFDKNENMAA 145

Query: 115 ---------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEE 164
                    + + +          F+        +    G      WD  + + +     
Sbjct: 146 KKKSVAMHTNYLSAC--------SFTNSDMQ---ILTASGDGTCALWDVESGQLLQSFHG 194

Query: 165 SHVEDVTQVHFVPNNQ-NKVVSASVDGLI 192
            H  DV  +   P+   N  VS   D   
Sbjct: 195 -HGADVLCLDLAPSETGNTFVSGGCDKKA 222

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 34/135 (25%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE----------VWSVTAGSQE 126
           KGH + V  + +        + S S DG +  WD+ + ++          V +       
Sbjct: 61  KGHGNKVLCMDWCKDKR--RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMAC------ 112

Query: 127 IFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLEES-----HVEDVTQVHFVPN 178
              ++  G     +A  CG        +     K      +      H   ++   F  +
Sbjct: 113 --AYAPSGCA---IA--CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165

Query: 179 NQNKVVSASVDGLIC 193
           +  ++++AS DG   
Sbjct: 166 DM-QILTASGDGTCA 179

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-------------- 114
                G  +GH+  V  ++ S    P++L S S D T+ +W                   
Sbjct: 6   VLVLRGTLEGHNGWVTSLATS-AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64

Query: 115 -HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQV 173
            H V             +  G+  Y L+A     ++ WD    +        H  DV  V
Sbjct: 65  SHIVQDC--------TLTADGA--YALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSV 113

Query: 174 HFVPNNQNKVVSASVDGLICTFDTGG 199
                    ++S S D  I  +   G
Sbjct: 114 DIDKKAS-MIISGSRDKTIKVWTIKG 138

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 34/151 (22%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF--- 114
            +VK ++    Q   +  GH+S +N ++ S    P   ++ S   DG I  W+  +    
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTAS----PDGTLIASAGKDGEIMLWNLAAKKAM 231

Query: 115 ------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----- 163
                  EV+S+         FS      Y LAA   + I+ +    +  V  L      
Sbjct: 232 YTLSAQDEVFSL--------AFSPNR---YWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280

Query: 164 --ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
             ++       + +  + Q  + +   D +I
Sbjct: 281 YSKAAEPHAVSLAWSADGQ-TLFAGYTDNVI 310

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------- 114
           +       G      KGHS  V   + +     + L S S D T+R WD  +        
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLT-ADGAYAL-SASWDKTLRLWDVATGETYQRFV 104

Query: 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDV 170
               +V SV              S    + +G   + I+ W     + +A L   H + V
Sbjct: 105 GHKSDVMSV--------DIDKKASM---IISGSRDKTIKVWT-IKGQCLATL-LGHNDWV 151

Query: 171 TQVHFVPNNQNK-----VVSASVDGLI 192
           +QV  VPN +       ++SA  D ++
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMV 178

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 35/152 (23%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS---- 113
            +VK+++    +      GH+  +N ++ S    P   +  S   DG    WD       
Sbjct: 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVS----PDGSLCASGGKDGQAMLWDLNEGKHL 250

Query: 114 -----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----- 163
                   + ++        CFS      Y L A  G  I+ WD   K  V  L+     
Sbjct: 251 YTLDGGDIINAL--------CFSPNR---YWLCAATGPSIKIWDLEGKIIVDELKQEVIS 299

Query: 164 ---ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
              ++     T + +  + Q  + +   D L+
Sbjct: 300 TSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLV 330

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 37/157 (23%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 62  VKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--- 114
             LY               KGH+  V QI+ + P  P ++ S S D TI  W        
Sbjct: 16  ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATT-PQFPDMILSASRDKTIIMWKLTRDETN 74

Query: 115 ------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL 162
                       H V  V          S  G   + L+      ++ WD          
Sbjct: 75  YGIPQRALRGHSHFVSDV--------VISSDGQ--FALSGSWDGTLRLWDLTTGTTTRRF 124

Query: 163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG 199
              H +DV  V F  +N+ ++VS S D  I  ++T G
Sbjct: 125 -VGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLG 159

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 27/145 (18%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHE--- 116
           ++L+   TG  +    GH+  V  ++FS         + S S D TI+ W+T    +   
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFS----SDNRQIVSGSRDKTIKLWNTLGVCKYTV 165

Query: 117 --------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
                   V  V         FS   S   +++ G    ++ W+  N K        H  
Sbjct: 166 QDESHSEWVSCV--------RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTG 216

Query: 169 DVTQVHFVPNNQNKVVSASVDGLIC 193
            +  V   P+      S   DG   
Sbjct: 217 YLNTVTVSPDGS-LCASGGKDGQAM 240

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 25/128 (19%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD------TRSF--HE--VWSVTAGSQE 126
           +GHS  V+ +  S       L S S DGT+R WD      TR F  H   V SV      
Sbjct: 83  RGHSHFVSDVVIS-SDGQFAL-SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV------ 134

Query: 127 IFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK-VV 184
              FS        + +G   + I+ W+     +    +ESH E V+ V F PN+ N  +V
Sbjct: 135 --AFSSDNRQ---IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189

Query: 185 SASVDGLI 192
           S   D L+
Sbjct: 190 SCGWDKLV 197

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 18/199 (9%)

Query: 60  NVVKLYSPVTGQYSGECK--GHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSFH 115
           NV+ ++   TG          H  T+  + +S  G     ++ +   D  +R  + R   
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG----ALICTSCRDKRVRVIEPRKGT 209

Query: 116 EVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGS----QIQFWDWRNKKQVACLEES-HVED 169
            V       +          ++  +L  G       Q+  WD ++ ++   L+E      
Sbjct: 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG 269

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH 229
           V    F P+     +    D  I  F+   +      L    +  +  G +G+     K 
Sbjct: 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG-MGYMP---KR 325

Query: 230 LWCLTHIETLSIWDWKDGQ 248
              +   E    +   + +
Sbjct: 326 GLEVNKCEIARFYKLHERK 344

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--SQEIF--CFSF 132
           +GH+  V  +++  P+  +VL S   D  I  WD  +   V ++        I+   +S 
Sbjct: 128 EGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186

Query: 133 GGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESH 166
            G+   L+   C   +++  + R    VA  +  H
Sbjct: 187 DGA---LICTSCRDKRVRVIEPRKGTVVAEKDRPH 218

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 29/139 (20%)

Query: 76  CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD------TRSFHE-----------VW 118
             GH++ V  I++  P   +V+ S S D T+  W+           E           V 
Sbjct: 77  VCGHTAPVLDIAWC-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135

Query: 119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL-EESHVEDVTQVHFVP 177
            V         +        LL+AGC + I  WD      V  L  + H + +  V +  
Sbjct: 136 IV--------AWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186

Query: 178 NNQNKVVSASVDGLICTFD 196
           +    + ++  D  +   +
Sbjct: 187 DGA-LICTSCRDKRVRVIE 204

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 62.6 bits (153), Expect = 5e-11
 Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
           D S ++V L   +V +Y   +        GH + V  +S++     HVL S S  G I  
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHH 200

Query: 109 WDTRSF-----------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNK 156
            D R              EV  +         +   G     LA+G   + +Q WD R+ 
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGL--------AWRSDGLQ---LASGGNDNVVQIWDARSS 249

Query: 157 KQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187
                    H   V  V + P   N + +  
Sbjct: 250 IPKFTKTN-HNAAVKAVAWCPWQSNLLATGG 279

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL--HSCSSDGTIRAWDTRSFHEV 117
           NVV+++   +         H++ V  +++  P   ++L     + D  I  W+  +   V
Sbjct: 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARV 297

Query: 118 WSVTAGSQEIFCFSFGGSTDY-LLAAGCGS---QIQFWDWRNKKQVACLE-ESHVEDVTQ 172
            +V AGSQ +    +  S     + +  G     +  W + +      ++  +H   V  
Sbjct: 298 NTVDAGSQ-VTSLIW--SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354

Query: 173 VHFVPNNQNKVVSASVDGLIC 193
               P+ +  + +A+ D  + 
Sbjct: 355 SALSPDGR-ILSTAASDENLK 374

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 12/150 (8%)

Query: 49  DWS---LMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDG 104
           DWS   ++AV+L    V +++  +G  S   +   S+ V  + +S      +      +G
Sbjct: 100 DWSNLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWS-HDGSFLS-VGLGNG 156

Query: 105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE 163
            +  +D  S  ++ ++      + C S+       L++G  S  I   D R         
Sbjct: 157 LVDIYDVESQTKLRTMAGHQARVGCLSWNRHV---LSSGSRSGAIHHHDVRIANHQIGTL 213

Query: 164 ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           + H  +V  + +  +   ++ S   D ++ 
Sbjct: 214 QGHSSEVCGLAWRSDGL-QLASGGNDNVVQ 242

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 61.8 bits (151), Expect = 7e-11
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 62  VKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
           V+++         EC     GH  TV    F        L S S D T+R W      E 
Sbjct: 177 VRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234

Query: 118 WSVTAG---------SQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES-- 165
                           ++++  ++    + L+A+      +  ++  + +     + +  
Sbjct: 235 DQQEWVCEAILPDVHKRQVYNVAW--GFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC 292

Query: 166 -HVEDVTQV-HFVPNNQNKVVSASVDGLI 192
             V ++  V     N +  + +   DG++
Sbjct: 293 HGVYEINVVKWLELNGKTILATGGDDGIV 321

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 43/166 (25%)

Query: 62  VKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF- 114
           +KL S     ++         H   +  +++     P   +L + S D T+  W      
Sbjct: 36  IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR----PHTSLLAAGSFDSTVSIWAKEESA 91

Query: 115 ----------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKK 157
                           +EV  V         +S  G     LA     + +  W+     
Sbjct: 92  DRTFEMDLLAIIEGHENEVKGV--------AWSNDGYY---LATCSRDKSVWIWETDESG 140

Query: 158 QVA-CLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD 200
           +   C+   + H +DV  V + P+    + S+S D  +  +    D
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDD 185

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 37/143 (25%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------------HE 116
           +       K +   +    FS      +L + S+D  I+    +              H+
Sbjct: 3   SINLIKSLKLYKEKIWSFDFS----QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK 58

Query: 117 --VWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES------HV 167
             + SV         +    S    LAAG   S +  W            +       H 
Sbjct: 59  KAIRSV--------AWRPHTSL---LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107

Query: 168 EDVTQVHFVPNNQNKVVSASVDG 190
            +V  V +  +    + + S D 
Sbjct: 108 NEVKGVAWSNDGY-YLATCSRDK 129

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 60  NVVKLYSPVTGQYSGECK----GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
            V+ +Y  V G++    K         +N + +   +   +L +   DG +  W    
Sbjct: 271 GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 39/157 (24%)

Query: 62  VKLYSPVTGQYSGEC-------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF 114
           V +++                 +GH + V  +++S     ++  +CS D ++  W+T   
Sbjct: 82  VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLA-TCSRDKSVWIWETDES 139

Query: 115 HE--------------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQV 159
            E              V  V         +    +    LA+      ++ W   +    
Sbjct: 140 GEEYECISVLQEHSQDVKHV--------IWHPSEAL---LASSSYDDTVRIWKDYDDDW- 187

Query: 160 ACLE--ESHVEDVTQVHFVPNNQ-NKVVSASVDGLIC 193
            C+     H   V    F       ++ S S D  + 
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 29/235 (12%), Positives = 70/235 (29%), Gaps = 45/235 (19%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSG--ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
           + +A+  + + V +Y     ++    E K H+  V  + ++ P +  ++ +C +D     
Sbjct: 21  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIV-TCGTDRNAYV 78

Query: 109 WDTRSF------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRN 155
           W  +                   V         ++         A G GS+ I    +  
Sbjct: 79  WTLKGRTWKPTLVILRINRAARCV--------RWAPNEKK---FAVGSGSRVISICYFEQ 127

Query: 156 KKQVACLE---ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN 212
           +      +   +     V  + + PN+   + + S D     F       ++    +   
Sbjct: 128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186

Query: 213 VGTSVGKV--GFFGETN-----------KHLWCLTHIETLSIWDWKDGQNVASFE 254
                G++                      +  ++H  T+ + D      VA+  
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 8/139 (5%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           V L               +  +  ++F   S+  ++ +      +  +   S     S  
Sbjct: 226 VCLADADKKMAVATLASETLPLLAVTFITESS--LVAAGHDCFPVL-FTYDSAAGKLSFG 282

Query: 122 AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ- 180
                    S  G T          +       +    A L+  H   V+Q+  +   + 
Sbjct: 283 GRLDVPKQSSQRGLTARERFQNLDKKA--SSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340

Query: 181 --NKVVSASVDGLICTFDT 197
             ++  +  +DG +  +D 
Sbjct: 341 KCSQFCTTGMDGGMSIWDV 359

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGEC--KGHSSTVNQISFS--GPSTPHVLHSCSSDGTI 106
            L A     N+ K  S      +G      H ++V+QIS    G +      +   DG +
Sbjct: 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354

Query: 107 RAWDTRS 113
             WD RS
Sbjct: 355 SIWDVRS 361

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 32/206 (15%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE--- 116
               L++ +    S      +      +             +++G I+  D+    +   
Sbjct: 78  GHDFLFNTIIRDGSKML-KRADYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQREI 134

Query: 117 -------VWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVE 168
                  +  +         F   G     L +     Q++ W  ++      L   H  
Sbjct: 135 DQAHVSEITKL--------KFFPSGEA---LISSSQDMQLKIWSVKDGSNPRTLIG-HRA 182

Query: 169 DVTQVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVGTSVGKVGFFGET 226
            VT +  +   +N V+SAS+DG I  ++  TG  I+         N    V  +  F  T
Sbjct: 183 TVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIH---TFNRKENPHDGVNSIALFVGT 238

Query: 227 NKHLWCLTHIETLSIWDWKDGQNVAS 252
           ++ L  ++  +  ++     G+ V +
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIA 264

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 28/157 (17%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           +K++S   G       GH +TV  I+       +VL S S DGTIR W+  +        
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNVL-SASLDGTIRLWECGTGTTIHTFN 220

Query: 114 -----FHEVWSVTAGSQEIFCFSFGGSTDY-----------LLAAGCGSQ-IQFWDWRNK 156
                   V S+ A            ST              + AG  S  I   +  +K
Sbjct: 221 RKENPHDGVNSI-ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279

Query: 157 KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           +Q   L          +    NN N + +   +G++ 
Sbjct: 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 19/161 (11%), Positives = 60/161 (37%), Gaps = 35/161 (21%)

Query: 60  NVVKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-- 116
            V+ +++  + + + +     + + N ++  G +  ++  +   +G +  WD RS     
Sbjct: 269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY-AGYENGMLAQWDLRSPECPV 327

Query: 117 ----------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-- 164
                     + +V         F+ G      +++G  + I+     + +      E  
Sbjct: 328 GEFLINEGTPINNV--------YFAAGA---LFVSSGFDTSIKLDIISDPESERPAIEFE 376

Query: 165 ------SHVEDVTQVHFVPNNQN--KVVSASVDGLICTFDT 197
                 S+ + V+Q  +V ++++  +V+    +     ++ 
Sbjct: 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 29/129 (22%)

Query: 77  KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS---------FHEVWSVTAGSQ 125
                     +F          L+    DG    ++T                       
Sbjct: 53  SRGVDAGKGNTFE----KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVD----- 103

Query: 126 EIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV 184
                            G     I+  D     Q    +  HV ++T++ F P+ +  ++
Sbjct: 104 ---TAKLQMRR---FILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGE-ALI 155

Query: 185 SASVDGLIC 193
           S+S D  + 
Sbjct: 156 SSSQDMQLK 164

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 34/150 (22%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------ 113
            ++++ +P+T Q      GH + +N++ F  P  P++L S S D  +R W+ ++      
Sbjct: 95  GIIRIINPITMQCIKHYVGHGNAINELKFH-PRDPNLLLSVSKDHALRLWNIQTDTLVAI 153

Query: 114 -------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH 166
                    EV S          +   G    +++ G    ++ W   +K+ +  ++ES 
Sbjct: 154 FGGVEGHRDEVLSA--------DYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIKES- 202

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
                   + PN  N      +   I   D
Sbjct: 203 ------YDYNPNKTN---RPFISQKIHFPD 223

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 33/146 (22%)

Query: 71  QYSGEC-----KGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRS---------- 113
           +YS +C     + H+  +  + F+        ++ +      +  ++  S          
Sbjct: 4   KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY 63

Query: 114 -----FHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCG-SQIQFWDWRNKKQVACLEESH 166
                    ++          +++  +T + LLA       I+  +    + +      H
Sbjct: 64  VDADADENFYTC--------AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-H 114

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLI 192
              + ++ F P + N ++S S D  +
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHAL 140

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 31/173 (17%)

Query: 41  VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS-----TVNQISFS--GPST 93
            F    K    L+  ++ +N V LY   +       + +            +++    ++
Sbjct: 25  QFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS 84

Query: 94  PHVLHSCSSDGTIRAWDTRSF----------HEVWSVTAGSQEIFCFSFGGSTDYLLAAG 143
             +L    S G IR  +  +           + +  +         F        LL + 
Sbjct: 85  HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL--------KFHPRDPN--LLLSV 134

Query: 144 CGSQ-IQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
                ++ W+ +    VA     E H ++V    +    + K++S  +D  + 
Sbjct: 135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLK 186

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 27/163 (16%)

Query: 62  VKLYSPVTGQY---SGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHE 116
           ++L++  T       G  +GH   V    +          + SC  D +++ W   S   
Sbjct: 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYD----LLGEKIMSCGMDHSLKLWRINSKRM 195

Query: 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV 176
           +             S+  + +         +I F D+  +       + H   V  V ++
Sbjct: 196 M--------NAIKESYDYNPNKTNRPFISQKIHFPDFSTR-------DIHRNYVDCVRWL 240

Query: 177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK 219
            +    ++S S +  I  +  G   +D D ++   +  T +G+
Sbjct: 241 GD---LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 18/156 (11%), Positives = 38/156 (24%), Gaps = 32/156 (20%)

Query: 59  TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW 118
           +  +      T         H + V+ + + G     ++ S S +  I  W      +  
Sbjct: 216 SQKIHFPDFSTRD------IHRNYVDCVRWLG----DLILSKSCENAIVCWKPGKMEDDI 265

Query: 119 SVTAGSQEIF----------------CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL 162
                S+                    FS       L       ++  WD   +      
Sbjct: 266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325

Query: 163 EE-----SHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
                       + Q  F  ++   +++   D  I 
Sbjct: 326 CTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIW 360

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 28/159 (17%)

Query: 54  AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDT 111
             S   N+    +   G    + + H   +  +++          + + S D  ++ W  
Sbjct: 6   HHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW 65

Query: 112 RS------------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQ 158
           R                V SV          S         A+    + I+ WD  N KQ
Sbjct: 66  RDERLDLQWSLEGHQLGVVSV--------DISHTLPI---AASSSLDAHIRLWDLENGKQ 114

Query: 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
           +  + ++   D   + F P++Q  + + +  G +  F  
Sbjct: 115 IKSI-DAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGV 151

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 58.6 bits (143), Expect = 9e-10
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 30/144 (20%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS------ 113
           V ++   +G+           +  I++S    P    L S + DG I  +D  +      
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYS----PDGKYLASGAIDGIINIFDIATGKLLHT 201

Query: 114 ----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVE 168
                  + S+         FS        L        I+ +D ++      L   H  
Sbjct: 202 LEGHAMPIRSL--------TFSPDSQL---LVTASDDGYIKIYDVQHANLAGTLSG-HAS 249

Query: 169 DVTQVHFVPNNQNKVVSASVDGLI 192
            V  V F P++    VS+S D  +
Sbjct: 250 WVLNVAFCPDDT-HFVSSSSDKSV 272

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 62  VKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHEV 117
           VK++     +       +GH   V  +  S        +  S S D  IR WD  +  ++
Sbjct: 60  VKVWKWRDERLDLQWSLEGHQLGVVSVDIS----HTLPIAASSSLDAHIRLWDLENGKQI 115

Query: 118 WSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHF 175
            S+ AG  + +  +F  S D   LA G     +  +   + K+   L+    + +  + +
Sbjct: 116 KSIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAY 172

Query: 176 VPNNQNKVVSASVDGLICTFDT 197
            P+ +  + S ++DG+I  FD 
Sbjct: 173 SPDGK-YLASGAIDGIINIFDI 193

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 53.2 bits (129), Expect = 4e-08
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 30/146 (20%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS---- 113
            ++ ++   TG+     +GH+  +  ++FS    P   +L + S DG I+ +D +     
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFS----PDSQLLVTASDDGYIKIYDVQHANLA 241

Query: 114 ------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESH 166
                    V +V         F    +      +    + ++ WD   +  V    + H
Sbjct: 242 GTLSGHASWVLNV--------AFCPDDTH---FVSSSSDKSVKVWDVGTRTCVHTFFD-H 289

Query: 167 VEDVTQVHFVPNNQNKVVSASVDGLI 192
            + V  V +  N   K+VS   D  I
Sbjct: 290 QDQVWGVKYNGNGS-KIVSVGDDQEI 314

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 24/102 (23%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           +K+Y       +G   GH+S V  ++F  P   H + S SSD +++ WD  +        
Sbjct: 230 IKIYDVQHANLAGTLSGHASWVLNVAFC-PDDTHFV-SSSSDKSVKVWDVGTRTCVHTFF 287

Query: 114 --FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWD 152
               +VW V         ++  GS    + +    Q I  +D
Sbjct: 288 DHQDQVWGV--------KYNGNGSK---IVSVGDDQEIHIYD 318

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 26/114 (22%)

Query: 95  HVLHSCSSDGTIRAWDTRSF--------HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC 144
           H  H  S +        +          H+  +WSV         +      +       
Sbjct: 3   HHHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSV--------AWGTNKKENSETVV-T 53

Query: 145 GSQ---IQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           GS    ++ W WR+++        E H   V  V           S+S+D  I 
Sbjct: 54  GSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIR 105

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 19/196 (9%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE--IFCFSFGG 134
             +   V   +F       +L + ++   +  +D R+   +  +    +   +       
Sbjct: 166 GKNEYAVRMRAFV-NEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE 224

Query: 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP---NNQNKVVSASVDGL 191
               L+       I  WD R    +          +T V        N   VV  S    
Sbjct: 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284

Query: 192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA 251
           +  +    +        + IN         F             +E L+    +    ++
Sbjct: 285 LTIW----NFVKGHCQYAFINSDEQPSMEHFLPIEK-------GLEELNFCGIRSLNALS 333

Query: 252 SF--ENARSLASDSWT 265
           +    N + L +D  T
Sbjct: 334 TISVSNDKILLTDEAT 349

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 26/157 (16%)

Query: 66  SPVTGQYSGECK-----GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV 120
           SP  G   G+          +++   + S P     L + S  G I+ W+ +        
Sbjct: 44  SPNMGNLRGKLIATLMENEPNSITSSAVS-PGETPYLITGSDQGVIKIWNLKEIIVGEVY 102

Query: 121 TA-----GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL------------- 162
           ++      S  +   +   + D    +    QI      + +Q + +             
Sbjct: 103 SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162

Query: 163 --EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
                +   V    FV   ++ +V+ +    +  FD 
Sbjct: 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 20/171 (11%), Positives = 45/171 (26%), Gaps = 31/171 (18%)

Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS---------------- 89
            KN   ++    S   + +++ V G             +   F                 
Sbjct: 270 GKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328

Query: 90  -------GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAA 142
                    S   +L +  +  +I  +         +V + S+    F     T     A
Sbjct: 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT-----A 383

Query: 143 GCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK-VVSASVDGLI 192
                ++     +   V      H + +  +     ++   +V+    GLI
Sbjct: 384 NLTMLLRKMKRTSTHSVDDS-LYHHDIINSISTCEVDETPLLVACDNSGLI 433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 9/60 (15%), Positives = 20/60 (33%)

Query: 50  WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109
                 +  T +++     +     +   H   +N IS        +L +C + G I  +
Sbjct: 377 IPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 36/189 (19%), Positives = 58/189 (30%), Gaps = 30/189 (15%)

Query: 28  LKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQIS 87
           + N  Q +     V   V         V  +    +  +       G  + H+  V  I+
Sbjct: 330 MPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIA 389

Query: 88  FSGPSTPHVLHSCSSDGTIRAWDTRSF---------------HEVWSVTAGSQEIFCFSF 132
                   ++ S S D +I  W                    H V  V          S 
Sbjct: 390 TP-IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV--------VLSS 440

Query: 133 GGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
            G       +G     ++ WD             H +DV  V F  +N+ ++VSAS D  
Sbjct: 441 DGQF---ALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNR-QIVSASRDRT 495

Query: 192 ICTFDTGGD 200
           I  ++T G+
Sbjct: 496 IKLWNTLGE 504

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 29/154 (18%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHEV 117
             VK+++    +      GH+  V+ ++ S    P   +  S   DG +  WD     ++
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVS----PDGSLCASGGKDGVVLLWDLAEGKKL 596

Query: 118 WSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACLE------------- 163
           +S+ A S  I    F  S + Y L A     I+ WD  +K  V  L+             
Sbjct: 597 YSLEANS-VIHALCF--SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653

Query: 164 -----ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
                +  V   T +++  +    + S   DG+I
Sbjct: 654 GPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVI 686

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HE--VWSVTAGSQE 126
           +GH   V+ + FS  +    + S S D T++ W+  +         H   V +V      
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV------ 567

Query: 127 IFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS 185
               S  GS     A+G     +  WD    K++  L E++   +  + F PN    + +
Sbjct: 568 --AVSPDGSL---CASGGKDGVVLLWDLAEGKKLYSL-EAN-SVIHALCFSPNRY-WLCA 619

Query: 186 ASVDGLICTFDT 197
           A+ +  I  +D 
Sbjct: 620 AT-EHGIKIWDL 630

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 10/117 (8%), Positives = 30/117 (25%), Gaps = 5/117 (4%)

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT--AGSQEIFCFSFGGS 135
                +  ++        +             + +    + ++   +        +   +
Sbjct: 294 NKDKPLGAVALK-SYEEELAKD--PRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA 350

Query: 136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
                           +      +     +H + VT +    +N + +VSAS D  I
Sbjct: 351 ASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSI 407

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 26/148 (17%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------F- 114
             L+   TGQ +    GH+  V  +S + P T   + S + D + + WD R       F 
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV-SGACDASAKLWDVREGMCRQTFT 223

Query: 115 -HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE-ESHVED 169
            HE  + ++        CF   G+     A G      + +D R  +++     ++ +  
Sbjct: 224 GHESDINAI--------CFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDT 197
           +T V F  + +  +++   D     +D 
Sbjct: 273 ITSVSFSKSGR-LLLAGYDDFNCNVWDA 299

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 32/148 (21%), Positives = 45/148 (30%), Gaps = 32/148 (21%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS---- 113
              KL+    G       GH S +N I F     P  +   + S D T R +D R+    
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLFDLRADQEL 261

Query: 114 --------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEE 164
                      + SV         FS  G     L AG        WD     +   L  
Sbjct: 262 MTYSHDNIICGITSV--------SFSKSGRL---LLAGYDDFNCNVWDALKADRAGVL-A 309

Query: 165 SHVEDVTQVHFVPNNQNKVVSASVDGLI 192
            H   V+ +    +    V + S D  +
Sbjct: 310 GHDNRVSCLGVTDDGM-AVATGSWDSFL 336

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           + ++   T          SS V   +++ PS  +V      D     ++ ++      V+
Sbjct: 79  LIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVA-CGGLDNICSIYNLKTREGNVRVS 136

Query: 122 ---AG-SQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFV 176
              AG +  + C  F    D  +    G      WD    +Q       H  DV  +   
Sbjct: 137 RELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLA 193

Query: 177 PNNQNKVVSASVDGLIC 193
           P+ +   VS + D    
Sbjct: 194 PDTR-LFVSGACDASAK 209

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 33/133 (24%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHEVWSVTAGSQE 126
           +GH + +  + +   S   +L S S DG +  WD+ +             V +       
Sbjct: 52  RGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC------ 103

Query: 127 IFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLEES---HVEDVTQVHFVPNNQ 180
              ++  G+    +A  CG        ++ + ++    +      H   ++   F+ +NQ
Sbjct: 104 --AYAPSGNY---VA--CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156

Query: 181 NKVVSASVDGLIC 193
             +V++S D    
Sbjct: 157 --IVTSSGDTTCA 167

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 52/195 (26%)

Query: 62  VKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------ 113
           VK++    G      + +GH   V Q++++ P   ++L SCS D  +  W   +      
Sbjct: 37  VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96

Query: 114 ------FHEVWSVTAGSQEIFCFS--FGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACL 162
                    V SV        C++    G     LA  CGS    I    +  + Q    
Sbjct: 97  HEHAGHDSSVNSV--------CWAPHDYGLI---LA--CGSSDGAISLLTYTGEGQWEVK 143

Query: 163 E--ESHVEDVTQVHFVP----------------NNQNKVVSASVDGLIC--TFDTGGDIN 202
           +   +H      V + P                N   +  S   D LI     +  G   
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203

Query: 203 DDDLLESVINVGTSV 217
           ++  LE+  +    V
Sbjct: 204 EEQKLEAHSDWVRDV 218

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 34/139 (24%)

Query: 60  NVVKLYSPVTGQYSGEC---KGHSSTVNQISFSGPSTP---HVLHSCSSDGTIRAWDTRS 113
           N++KL+         E    + HS  V  ++++ PS       + SCS DG +  W    
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA-PSIGLPTSTIASCSQDGRVFIWTCDD 247

Query: 114 F--------------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQ 158
                            VW V         +S   +    LA   G +++  W      Q
Sbjct: 248 ASSNTWSPKLLHKFNDVVWHV--------SWSITANI---LAVSGGDNKVTLWKESVDGQ 296

Query: 159 VACLEESHVEDVTQVHFVP 177
             C+ +   +    V    
Sbjct: 297 WVCISD-VNKGQGSVSASV 314

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 38/144 (26%)

Query: 78  GHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSF----------HE--VWSVTAG 123
            H   ++       G      L +CSSD +++ +D R+           HE  VW V   
Sbjct: 11  SHEDMIHDAQMDYYG----TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV--- 63

Query: 124 SQEIFCFS--FGGSTDYLLAAGCG-SQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPN 178
                 ++    G+    LA+     ++  W   N    +       H   V  V + P+
Sbjct: 64  -----AWAHPMYGNI---LASCSYDRKVIIWREENGTWEKSHEHAG-HDSSVNSVCWAPH 114

Query: 179 NQ-NKVVSASVDGLIC--TFDTGG 199
           +    +   S DG I   T+   G
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEG 138

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 41/165 (24%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------ 113
           +   ++  + G+  G   GH+ T+  I      T + + + S+D +I+ WD  +      
Sbjct: 54  SSASVWYSLNGERLGTLDGHTGTIWSIDVD-CFTKYCV-TGSADYSIKLWDVSNGQCVAT 111

Query: 114 --FH-EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ------IQFWDWRNKKQVACLEE 164
                 V  V         FS  G+      A   +       I  ++         L +
Sbjct: 112 WKSPVPVKRV--------EFSPCGNY---FLAILDNVMKNPGSINIYEIERDSATHELTK 160

Query: 165 SHVED------------VTQVHFVPNNQNKVVSASVDGLICTFDT 197
              E              T   +    +  +++   DG I  +D 
Sbjct: 161 VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDV 204

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 31/141 (21%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS------ 113
             LY   +   + +  GH   + Q+ ++        +L SCS D +   W + +      
Sbjct: 14  ENLYFQGSHMKAIKLTGHERPLTQVKYN----KEGDLLFSCSKDSSASVWYSLNGERLGT 69

Query: 114 ----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVE 168
                  +WS+                      G     I+ WD  N + VA  +     
Sbjct: 70  LDGHTGTIWSI--------DVDCFTKY---CVTGSADYSIKLWDVSNGQCVATWKSPV-- 116

Query: 169 DVTQVHFVPNNQNKVVSASVD 189
            V +V F P      ++   +
Sbjct: 117 PVKRVEFSPCGN-YFLAILDN 136

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
              + Y  +  +  G  +GH   +N ++ S  G S      S   DG IR       +  
Sbjct: 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS----YASGGEDGFIRLHHFEKSYFD 350

Query: 118 W 118
           +
Sbjct: 351 F 351

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 7/140 (5%)

Query: 54  AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
            +      + +Y       +G+  GH   ++ + F+  +   +L S S DGT+R W   +
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL-SASDDGTLRIWHGGN 278

Query: 114 FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQ 172
            +        SQ I   S+    D  + +      ++ W  +    +A         +  
Sbjct: 279 GNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRLWSLKQNTLLALSIV-DGVPIFA 335

Query: 173 VHFVPNNQNKVVSASVDGLI 192
                + Q K   A +DG +
Sbjct: 336 GRISQDGQ-KYAVAFMDGQV 354

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 25/142 (17%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           ++++    G       GHS ++   S+       +  SCS DG++R W  +         
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQSIVSASWV-GDDKVI--SCSMDGSVRLWSLKQNTLLALSI 327

Query: 114 --FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDV 170
                +++           S  G      A      Q+  +D +     +     + + +
Sbjct: 328 VDGVPIFAG--------RISQDGQK---YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376

Query: 171 TQVHFVPNNQNKVVSASVDGLI 192
                +P   +   S   D + 
Sbjct: 377 LNPLPIPLYASYQSSQDNDYIF 398

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 37/157 (23%)

Query: 60  NVVKLYSPVTGQYSGECKGHS---STVNQISFSGPSTPHV---------LHSCSSDGTIR 107
           NV  L++ ++G      +      S++N  + SG  +  V                G I 
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230

Query: 108 AWDTRS----------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNK 156
            +                 +  +         F+        L +      ++ W   N 
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVL--------EFNDTNKL---LLSASDDGTLRIWHGGNG 279

Query: 157 KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
               C    H + +    +V +++  V+S S+DG + 
Sbjct: 280 NSQNCFYG-HSQSIVSASWVGDDK--VISCSMDGSVR 313

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 68  VTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--------FHEVWS 119
            TG        H + +  + ++     H++ S   +     W+  S          E   
Sbjct: 137 KTGALLNVLNFHRAPIVSVKWN-KDGTHII-SMDVENVTILWNVISGTVMQHFELKETGG 194

Query: 120 VTAGSQEIFCFSFGGSTDY---------LLAAGCGSQIQFWDWRNKKQVACLEESHVEDV 170
            +  ++     S  GS             +  G    I  +    K     L   H   +
Sbjct: 195 SSINAE---NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPI 250

Query: 171 TQVHFVPNNQNKVVSASVDGLI 192
           + + F   N+  ++SAS DG +
Sbjct: 251 SVLEFNDTNK-LLLSASDDGTL 271

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/127 (9%), Positives = 25/127 (19%), Gaps = 30/127 (23%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHE--- 116
           V+L+S                +     S               DG +  +D +  +    
Sbjct: 312 VRLWSLKQNTLLALSIVDGVPIFAGRIS----QDGQKYAVAFMDGQVNVYDLKKLNSKSR 367

Query: 117 --------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ--FWDWRNKKQVACLEESH 166
                   + +               S     ++     I    W+    K         
Sbjct: 368 SLYGNRDGILNPLP-------IPLYAS---YQSSQDNDYIFDLSWNCAGNKISVAY-SLQ 416

Query: 167 VEDVTQV 173
              V  +
Sbjct: 417 EGSVVAI 423

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 37/153 (24%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWD-------TRSFHE--V 117
               S      ++ V  +++S       + + +   +G +R W+         +FH   +
Sbjct: 97  PFALSASSGKTTNQVTCLAWS----HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPI 152

Query: 118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHF 175
            SV         ++  G+   +++    +    W+  +   +   E  E+    +   + 
Sbjct: 153 VSV--------KWNKDGTH--IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202

Query: 176 VPNNQ----------NKVVSASVDGLICTFDTG 198
             +            +K V     G I  +   
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT 235

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 62  VKLYSPVTGQYSGEC-KGHSSTVNQISFSGPST----PHVLHSCSSDGTIRAWDTRSFHE 116
           + +++    +      KGH   +N I   G          + + S DGT++ WD R   +
Sbjct: 92  LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151

Query: 117 VWSV-------TAGSQEIFCFSFGGSTD-YLLAAGCGSQ-IQFWDWRNKKQVACLEESHV 167
             +                 F    + +  ++ AG  +  I+ +D RN       E +  
Sbjct: 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW--ETNIK 209

Query: 168 EDVTQVHFVPN--NQNKVVSASVDGLICTFDT 197
             V  + F     + NK+V+ S++G    FD 
Sbjct: 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 29/153 (18%)

Query: 62  VKLYSPVTGQYSGEC----KGHS-STVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF 114
           VK++ P             +G +      ++F         V+ +   +G I+ +D R+ 
Sbjct: 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM 200

Query: 115 ---------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE- 163
                    + V S+         F     +   L A     +   +D R +        
Sbjct: 201 ALRWETNIKNGVCSL--------EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252

Query: 164 ---ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
              ++H   V QV  +P N+   ++A   G + 
Sbjct: 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH 285

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 48/167 (28%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSFHE--- 116
           +KL+         E     + V  + F     S   ++ + S +G    +D R+ H    
Sbjct: 192 IKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV-ATSLEGKFHVFDMRTQHPTKG 249

Query: 117 ------------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE 163
                       VW V                  L     G+  +  W +    Q +  +
Sbjct: 250 FASVSEKAHKSTVWQV--------RHLPQNRE--LFLTAGGAGGLHLWKYEYPIQRSKKD 299

Query: 164 ES------------------HVEDVTQVHFVPNNQNKVVSASVDGLI 192
                                 + ++ + + P+ +   V +S D  +
Sbjct: 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 45/196 (22%)

Query: 77  KGHSSTVNQISFSGPSTPHVL---HSCSSDGTIRAWDTRS-----------FHEVWSVTA 122
           KG + TV    +  P +   +   +     G I+ ++ +               +   T 
Sbjct: 15  KGFNYTVFDCKWV-PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF 73

Query: 123 GSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPN--- 178
           G+      S        LA G     +  W+    +      + H E +  +  +     
Sbjct: 74  GA-----TSLQQRY---LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGI 125

Query: 179 --NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI 236
                ++V+ S DG +  +D     +    +E               GE  +  W +   
Sbjct: 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP------------VQGENKRDCWTVAFG 173

Query: 237 ETLSIWDWKDGQNVAS 252
              +    ++ + V +
Sbjct: 174 NAYN----QEERVVCA 185

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/222 (13%), Positives = 55/222 (24%), Gaps = 37/222 (16%)

Query: 58  STNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF 114
            T V++LY    G      +   +  +   +F   S      L +    G +  W+  + 
Sbjct: 42  GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS-LQQRYLATGDFGGNLHIWNLEAP 100

Query: 115 ---------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEE 164
                    H+                G      +  G     ++ WD R K       E
Sbjct: 101 EMPVYSVKGHKEIINAIDGIGGLGIGEGAPE---IVTGSRDGTVKVWDPRQKDDPVANME 157

Query: 165 --------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFD--TGGDINDDDLLESVINVG 214
                             +    +  V +   +G I  FD            L    N+ 
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM-------ALRWETNIK 209

Query: 215 TSVGKVGF--FGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254
             V  + F     +   L   +      ++D +       F 
Sbjct: 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA 251

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 54  AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
                +  +++    +          +  ++ + +S P    +    S D T+R    
Sbjct: 295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-PDKRGLCVCSSFDQTVRVLIV 351

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 22/146 (15%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           V+L+S                +N + +       +L     D  I          +++ +
Sbjct: 41  VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP------LFATS 92

Query: 122 AGSQ---------EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQ 172
                         +   SF      +++       + W       V  L ++H   V  
Sbjct: 93  GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWD 147

Query: 173 VHFVPNNQNKVVSASVDGLICTFDTG 198
              V  ++NK ++AS D  I  +   
Sbjct: 148 AKVVSFSENKFLTASADKTIKLWQND 173

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 32/142 (22%), Positives = 45/142 (31%), Gaps = 27/142 (19%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----- 114
           N V L++           GH   V  +SF       V+ S S D T + W   S      
Sbjct: 84  NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWKEGSLVYNLQ 139

Query: 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDV 170
                VW            SF  +           + I+ W   N K +      H + V
Sbjct: 140 AHNASVWDAK-------VVSFSENK---FLTASADKTIKLWQ--NDKVIKTFSGIHNDVV 187

Query: 171 TQVHFVPNNQNKVVSASVDGLI 192
             +  V +     +S S DGLI
Sbjct: 188 RHLAVVDDGH--FISCSNDGLI 207

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 49.4 bits (119), Expect = 7e-07
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 20/130 (15%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG--- 133
           KGH   V  +     S    + S S DGT+R W          V  G   +    +    
Sbjct: 15  KGHDQDVRDVVAVDDSK---VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK 71

Query: 134 -----GSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV 188
                G  D ++     + +  +    +  +  L   H  +V  + F       V+S S 
Sbjct: 72  ELLLFGGKDTMI-----NGVPLFATSGEDPLYTLIG-HQGNVCSLSFQD---GVVISGSW 122

Query: 189 DGLICTFDTG 198
           D     +  G
Sbjct: 123 DKTAKVWKEG 132

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
            ++KL    TG      +GH S V  I          + SC  D T+R W   +      
Sbjct: 205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSLKQV 261

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE-ESHVEDV 170
           +T  +  I+       ++  +  G     ++ +     +  +  E +  +   
Sbjct: 262 ITLPAISIWSVDC--MSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 27/130 (20%)

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHEVWSVTAGSQEI 127
            H+  V  ++       H + SCS+DG I+  D  +             V+ +       
Sbjct: 182 IHNDVVRHLAVV-DDG-HFI-SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI------- 231

Query: 128 FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS 187
                 G    +++ G    ++ W   N      +       +  V  + N    ++  S
Sbjct: 232 -KLLPNGD---IVSCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGD--IIVGS 284

Query: 188 VDGLICTFDT 197
            D L+  F  
Sbjct: 285 SDNLVRIFSQ 294

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 9/153 (5%), Positives = 26/153 (16%), Gaps = 34/153 (22%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------ 113
               +Y    G+   + +  +  +  I         V  +            +       
Sbjct: 46  RTDGIYIINLGKTWEKLQLAARVIVAIENPQDII--VQSARPYGQRAVLKFAQYTGAHAI 103

Query: 114 ----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLE--- 163
                   ++               S                       +  +  +    
Sbjct: 104 AGRHTPGTFTN--------QLQTSFSE---PR--LLILTDPRTDHQPIKESALGNIPTIA 150

Query: 164 ---ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
                       +    NN+ K     +  L+ 
Sbjct: 151 FCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLA 183

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 7/152 (4%), Positives = 19/152 (12%), Gaps = 17/152 (11%)

Query: 60  NVVKLYSPVTGQYSGEC-------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR 112
           +    + P+     G                  I     +             +     +
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP-ANNKGKQSIGCLFWLLARMVLQ 188

Query: 113 SFHEVWSVTAGSQE-----IFCFSFGGSTD--YLLAAGCGSQIQFWDWRNKKQVACLEES 165
               +                              A          ++          E 
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEE-AKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEW 247

Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
             +   Q   +P         +          
Sbjct: 248 GTDAAAQPAAIPAQA-GADWTAAPAPAAGGWD 278

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 3/134 (2%), Positives = 13/134 (9%), Gaps = 31/134 (23%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--------HE--VWSVTAGSQE 126
              +                        T   +                 + ++      
Sbjct: 22  MLAADVHLGTKNC--DFQMER-YVYKRRTDGIYIINLGKTWEKLQLAARVIVAI------ 72

Query: 127 IFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183
                         +               +     A     H           +   + 
Sbjct: 73  --ENPQDIIV---QS--ARPYGQRAVLKFAQYTGAHAIA-GRHTPGTFTNQLQTSFS-EP 123

Query: 184 VSASVDGLICTFDT 197
               +         
Sbjct: 124 RLLILTDPRTDHQP 137

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
              K++   + Q   +   H + V  I +        + + S D T++ WDTRS + +  
Sbjct: 108 KTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA-CLEESHVEDVTQVHFVPN 178
           +    +  +C          + A     +  +   N+      +E         V    +
Sbjct: 167 LQ-LPERCYCADV--IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223

Query: 179 NQNKV---VSASVDG 190
            QNK       S++G
Sbjct: 224 KQNKPTGFALGSIEG 238

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 42/299 (14%), Positives = 82/299 (27%), Gaps = 65/299 (21%)

Query: 80  SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--HE--VWSVTAGSQEIFCFSFGGS 135
           S       F   S   +  S ++D      D       +  +  +         FS    
Sbjct: 2   SLFGTTSGFG-TSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCL--------SFSPPTL 52

Query: 136 TDYLLAAGCG-SQIQFWDWR-NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
               L AG   + ++ W+ + + + +   ++ H   V  V +  +   KV +AS D    
Sbjct: 53  PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDKTAK 111

Query: 194 TFDTGGDINDDDLLESVINVGT---SVGKVGFFGETNKHLWCLTHI------ETLSIWDW 244
            +D   +          I +      V  + +    N      + +      +TL  WD 
Sbjct: 112 MWDLSSN--------QAIQIAQHDAPVKTIHWIKAPNY-----SCVMTGSWDKTLKFWDT 158

Query: 245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG 304
           +    +   +           L +  Y  D  YP       V   T    +  + +    
Sbjct: 159 RSSNPMMVLQ-----------LPERCYCADVIYPM----AVV--ATAERGLIVYQLE--- 198

Query: 305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE 363
                     +        R V      Q +P          G  +GR+     +  + 
Sbjct: 199 --NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF-----ALGSIEGRVAIHYINPPNP 250

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 26/135 (19%)

Query: 77  KGHSSTVNQISFS-GPSTPHVLHSCSSDGTIRAWDTRSF----------HE--VWSVTAG 123
                ++  +SFS      + L + S    +R W+ +            H   V  V   
Sbjct: 36  SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV--- 92

Query: 124 SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN-NQNK 182
                C+S  GS   +  A C    + WD  + + +      H   V  +H++   N + 
Sbjct: 93  -----CWSDDGSK--VFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSC 143

Query: 183 VVSASVDGLICTFDT 197
           V++ S D  +  +DT
Sbjct: 144 VMTGSWDKTLKFWDT 158

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/190 (10%), Positives = 44/190 (23%), Gaps = 39/190 (20%)

Query: 30  NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS 89
           N +      +  +        +++A +    +V        ++             ++  
Sbjct: 162 NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221

Query: 90  --GPSTPHVLHSCSSDGTIRAWD-------------------------TRSFHEVWSVTA 122
               + P      S +G +                              +  + V  +  
Sbjct: 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI-- 279

Query: 123 GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK 182
                  F     T  L   G   +  FWD   + ++    E   + ++   F  N    
Sbjct: 280 ------AFHPVHGT--LATVGSDGRFSFWDKDARTKLKTS-EQLDQPISACCFNHNGN-I 329

Query: 183 VVSASVDGLI 192
              AS     
Sbjct: 330 FAYASSYDWS 339

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/195 (14%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 62  VKLYS-PVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
           V+ +    +GQ   +  + H+  V  + +S       + + S D T + WD  S ++   
Sbjct: 66  VRCWEVQDSGQTIPKAQQMHTGPVLDVCWS--DDGSKVFTASCDKTAKMWDLSS-NQAIQ 122

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACLEESHVEDVTQVHFV 176
           +      +    +  + +Y      GS    ++FWD R+   +  L+             
Sbjct: 123 IAQHDAPVKTIHWIKAPNYSCVMT-GSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIY 180

Query: 177 PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF--GETNKHLWCLT 234
           P     V +A    ++   +                +      V  F   +     + L 
Sbjct: 181 PMAV--VATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234

Query: 235 HIE-TLSIWDWKDGQ 248
            IE  ++I       
Sbjct: 235 SIEGRVAIHYINPPN 249

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 17/183 (9%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI 106
             +    + +TN V+LY      +        H   V  + ++ P +  ++ +CS D   
Sbjct: 22  QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA-PKSNRIV-TCSQDRNA 79

Query: 107 RAWD---TRSFHEVWSVTAGSQEIFC--FSFGGSTDYLLAAGCGSQ-IQFWDW---RNKK 157
             ++     ++ +   +   ++      +S         A G G++ I    +    +  
Sbjct: 80  YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK---FAVGSGARVISVCYFEQENDWW 136

Query: 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217
               L+      +  + + PNN   + +   D             D     SV       
Sbjct: 137 VSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195

Query: 218 GKV 220
             V
Sbjct: 196 NTV 198

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 40/312 (12%), Positives = 68/312 (21%), Gaps = 73/312 (23%)

Query: 60  NVVKLYSPVTGQYSGECK----GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH 115
            V+ +            K       ST+  + +  P+    L +  +D            
Sbjct: 122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH-PNNVL-LAAGCADRKAYVLSAYV-- 177

Query: 116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF 175
                                D    A        W  R      C E      V  V F
Sbjct: 178 ------------------RDVDAKPEASV------WGSRLPFNTVCAEYPSGGWVHAVGF 213

Query: 176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH 235
            P+    +  A  D  +              L +V                         
Sbjct: 214 SPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITV------------------------K 248

Query: 236 IETLSIWD--W-KDGQNVAS--------FENARSLASDSWTLDDVDYFVDCHYPGEGENL 284
           +  L +    W  +   VA+         +   S  + +  LD         + G     
Sbjct: 249 LSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEG 308

Query: 285 WVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG 344
               G  + T                  + L   H  ++ ++ P     G          
Sbjct: 309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA-----F 363

Query: 345 WTGGEDGRLCCW 356
            + G DGR+  W
Sbjct: 364 TSSGTDGRVVLW 375

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 62  VKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
           +K++       + E     + H S++  I ++ P    ++ S S D T++ W+     E 
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94

Query: 118 WSVTAGSQEIFCFSFGGSTDY-------------LLAAGCGSQ---IQFWDWRNKKQVAC 161
            S   G +     +   S                 LA  C      ++ +D      +  
Sbjct: 95  CS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA--CLGNDGILRLYDALEPSDLRS 149

Query: 162 LE------------ESHVEDVTQVHFVPNNQN--KVVSASVDGLI 192
                          +H++    + + P+  +  K+  ++++  I
Sbjct: 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI 194

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 60  NVVKLYSPVTGQYS--GECKGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSFH 115
             +       G+     +  GH S +  IS++        ++ +   DG IR +      
Sbjct: 192 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251

Query: 116 EVWSVTAGSQEIFCFSFGGSTDY-LLAAGC--GSQIQFWDWRNKKQVACLE--ESHVEDV 170
                 +         F  S D  + A G    +  +  + ++  QV  L   + H  +V
Sbjct: 252 SPL--ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309

Query: 171 TQVHFVPNNQNKVVSASVDGLI 192
             V +       + SA  DG +
Sbjct: 310 WSVSWNLTG-TILSSAGDDGKV 330

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
            +L S +  +   E   H+  V  +S++   T  +L S   DG +R W    
Sbjct: 288 AELQSNLQVELLSEHDDHNGEVWSVSWN--LTGTILSSAGDDGKVRLWKATY 337

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 20/161 (12%), Positives = 39/161 (24%), Gaps = 42/161 (26%)

Query: 60  NVVKLYSPVTGQ-------------YSGECKGHSSTVNQISFSGPSTPHVLH--SCSSDG 104
            +++LY  +                 S     H  +   +S+  PS          + + 
Sbjct: 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC-PSRFSPEKLAVSALEQ 192

Query: 105 TIRAWD--TRSFHE----------VWSVTAGSQEIFCFSFGGSTDY-LLAAGCG-SQIQF 150
            I          H           + S+         ++      Y L+A GC   +I+ 
Sbjct: 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSI--------SWAPSIGRWYQLIATGCKDGRIRI 244

Query: 151 WDWRNKKQVACLEESHVEDVTQVHFVP-NNQNKVVSASVDG 190
           +    K        S         F    + +       D 
Sbjct: 245 FKITEKLSPL---ASEESLTNSNMFDNSADVDMDAQGRSDS 282

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 18/125 (14%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           ++L+    G      +GH   V  I F        + S + DG I+ WD  +  +  +  
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRCIRFDN----KRIVSGAYDGKIKVWDLVAALDPRAPA 373

Query: 122 AG---------SQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVT 171
                      S  +F   F       + +      I  WD+ N               T
Sbjct: 374 GTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFLNDPAAQAE-PPRSPSRT 429

Query: 172 QVHFV 176
             +  
Sbjct: 430 YTYIS 434

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 33/149 (22%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           V+++   TG+       H   V  + F+      ++ +CS D +I  WD  S        
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRR 250

Query: 114 -----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
                   V  V    + I   S   S D          I+ W+    + V  L   H  
Sbjct: 251 VLVGHRAAVNVVDFDDKYI--VS--ASGDRT--------IKVWNTSTCEFVRTL-NGHKR 297

Query: 169 DVTQVHFVPNNQNKVVSASVDGLICTFDT 197
            +  + +       VVS S D  I  +D 
Sbjct: 298 GIACLQY---RDRLVVSGSSDNTIRLWDI 323

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
           N +K++   T +      GH+ +V  + +       V+ + SSD T+R WD  +   + +
Sbjct: 153 NTIKIWDKNTLECKRILTGHTGSVLCLQYDE----RVIITGSSDSTVRVWDVNTGEMLNT 208

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE--ESHVEDVTQVHFV 176
           +    + +    F       +        I  WD  +   +        H   V  V F 
Sbjct: 209 LIHHCEAVLHLRFNNGM---MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264

Query: 177 PNNQNKVVSASVDGLI 192
             +   +VSAS D  I
Sbjct: 265 --DDKYIVSASGDRTI 278

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 69  TGQYSGEC-KGHSSTVNQI---SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS 124
            G++S +     S T   +    +        + S   D TI+ WD  +      +T  +
Sbjct: 118 CGRHSLQRIHCRSETSKGVYCLQYDD----QKIVSGLRDNTIKIWDKNTLECKRILTGHT 173

Query: 125 QEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV 183
             + C  +       +  G     ++ WD    + +  L   H E V  + F   N   +
Sbjct: 174 GSVLCLQYDERV---IITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF---NNGMM 226

Query: 184 VSASVDGLICTFD--TGGDINDDDLLE 208
           V+ S D  I  +D  +  DI    +L 
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLV 253

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 31/142 (21%)

Query: 68  VTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF------------- 114
           + G+     + H   V  ++ + P     L + S D T++ WD R               
Sbjct: 238 MDGKELWNLRMHKKKVTHVALN-PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296

Query: 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE-----ESHVE 168
           H V +         CFS  G+    L        I+ +          L           
Sbjct: 297 HPVNAA--------CFSPDGAR---LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345

Query: 169 DVTQVHFVPNNQNKVVSASVDG 190
              +  + P     VV    D 
Sbjct: 346 TPIKAAWHPRYNLIVVGRYPDP 367

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 13/145 (8%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE------------ 116
           + +   +          +++  P+ P  +   S  G I  W+     +            
Sbjct: 108 SYRILQKAAPFDRRATSLAWH-PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 166

Query: 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE-ESHVEDVTQVH 174
           +  +         F+   +      A       +  D++          ++       + 
Sbjct: 167 ITGL--------KFNPLNTN--QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216

Query: 175 FVPNNQNKVVSASVDGLICTFDTGG 199
              +++  VV+    G +   +  G
Sbjct: 217 VSASSR-MVVTGDNVGNVILLNMDG 240

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 29/150 (19%)

Query: 62  VKLYSPVTGQYSGE---CKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS--- 113
           VK++     +          H   VN   FS    P    L +      IR +       
Sbjct: 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFS----PDGARLLTTDQKSEIRVYSASQWDC 330

Query: 114 -----FHEVWSVTAGSQEIFCFSFGGST---------DYLLAAGCGSQ-IQFWDWRNKKQ 158
                 H        +     +    +          ++        + I  +D  + K 
Sbjct: 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390

Query: 159 VACLEESHVEDVTQVH-FVPNNQNKVVSAS 187
           +  L +     ++ ++ F P     + SA 
Sbjct: 391 MCQLYDPESSGISSLNEFNPMGD-TLASAM 419

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 29/220 (13%)

Query: 61  VVKLYSPVTGQYSGE-CKGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSFHEV 117
            + + S    +++ E   GH S +  +           ++ +   D  I+         V
Sbjct: 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHYPQCFIV 233

Query: 118 WSVTAG-SQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE-ESHVEDVTQVH 174
                G    +         DYLL +  G  +I  WDW+  K ++  +  S ++      
Sbjct: 234 DKWLFGHKHFVSSICC--GKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291

Query: 175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT 234
            +   +                   + +  +   S I    ++  V FF E  K +  L 
Sbjct: 292 HLAPPR---------------FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL- 335

Query: 235 HIETLSIWDWKDGQNVASFENARSLASDS----WTLDDVD 270
            +      D    Q +    N  SL++ +     TLD+ +
Sbjct: 336 EMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKE 375

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 29/218 (13%)

Query: 54  AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
             S   + +K  +              S +  +  +      ++    SD ++  +D   
Sbjct: 76  LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDK 134

Query: 114 FHEVWSVTAGSQEIF------CFSFGGSTDYLLAAGCGS----QIQFWDWRNKKQVACLE 163
             +                    +   +T   +           I       +K      
Sbjct: 135 TSKNVLKLRKRFCFSKRPNAISIAEDDTT---VIIADKFGDVYSIDINSIPEEKFTQEPI 191

Query: 164 ESHVEDVTQVHFVPNNQNK--VVSASVDGLICTFD--TGGDINDDDL--LESVINVGTSV 217
             HV  +T VH + ++     ++++  D  I          ++         V ++    
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250

Query: 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN 255
                    +  L      + +  WDWK G+N+++F+ 
Sbjct: 251 --------KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 43/256 (16%)

Query: 51  SLMAVSLSTNVVKLYSPVTGQYSGECKG---HSSTVNQISFSGPSTPHVLHSCSSDGTIR 107
           +L+A++  T  V +Y    GQ   E        S + ++ F        L   ++  T+ 
Sbjct: 30  NLLAIATVTGEVHIY----GQQQVEVVIKLEDRSAIKEMRFV---KGIYLVVINAKDTVY 82

Query: 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR----------NKK 157
                S  +V +      +I       S D++L       +  +D            N +
Sbjct: 83  VLSLYS-QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141

Query: 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI-----------------CTFDTGGD 200
           + +    + +  +  + + P +   V+ +     +                   F  GGD
Sbjct: 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGD 201

Query: 201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLA 260
            ++    +    V  S+     +   + H+  +    +L  WD   G  + +     +  
Sbjct: 202 FSEKTNEKRTPKVIQSL-----YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256

Query: 261 SDSWTLDDVDYFVDCH 276
           +        D   +  
Sbjct: 257 NVPQPDYIRDSSTNAA 272

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 33/146 (22%)

Query: 62  VKLYSPVTGQ--YSGECKGHSSTVNQISFS--------GPSTPHVLHSCSSDGTIRAWDT 111
           +KL++ +      S E + HS  V+ + +S                 S   DG ++ W+T
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201

Query: 112 -----RSF--HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVAC 161
                 +F  HE  V  +          S  G     +A G    ++  WD  N      
Sbjct: 202 NFQIRYTFKAHESNVNHL--------SISPNGKY---IATGGKDKKLLIWDILNLTYPQR 250

Query: 162 LEESHVEDVTQVHFVPNNQNKVVSAS 187
             +     + Q+ F P  Q  V   +
Sbjct: 251 EFD-AGSTINQIAFNPKLQ-WVAVGT 274

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 33/148 (22%)

Query: 73  SGECKGHSSTVNQISFSGPSTP----HVLHSCSSDGTIRAWDTRSF-------------- 114
            G  +GHS  V  I             VL S S D T+  W                   
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73

Query: 115 ---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171
              H V  +          S      + +++     ++ WD R           H  +V 
Sbjct: 74  GHNHFVSDL--------ALSQENC--FAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVY 122

Query: 172 QVHFVPNNQNKVVSASVDGLICTFDTGG 199
            V F P+N+ +++SA  +  I  ++  G
Sbjct: 123 SVAFSPDNR-QILSAGAEREIKLWNILG 149

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 37/154 (24%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS------ 113
           ++L+   TG       GH S V  ++FS    P    + S  ++  I+ W+         
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFS----PDNRQILSAGAEREIKLWNILGECKFSS 155

Query: 114 ------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQ---IQFWDWRNKKQV 159
                    V  V         +S    +   +               ++ W+  N +  
Sbjct: 156 AEKENHSDWVSCV--------RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIR 206

Query: 160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
              +  H  +V  +   PN +  + +   D  + 
Sbjct: 207 YTFKA-HESNVNHLSISPNGK-YIATGGKDKKLL 238

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 45/179 (25%)

Query: 62  VKLY--SPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS------ 113
           +K++     T +      GH   V ++ ++ P    +L SCS DG +  W   +      
Sbjct: 33  IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92

Query: 114 ----FHE--VWSVTAGSQEIFCFS--FGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACL 162
                H   V SV         ++    G     L     S    +   +++     + +
Sbjct: 93  AVHAVHSASVNSV--------QWAPHEYGPM---LL--VASSDGKVSVVEFKENGTTSPI 139

Query: 163 E-ESHVEDVTQVHFVPNNQN------------KVVSASVDGLICTFDTGGDINDDDLLE 208
             ++H   V    + P                K V+   D L+  +    D     L  
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 18/121 (14%)

Query: 60  NVVKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS 113
           N+VK++   +   +       +GHS  V  +++S P+      + S S D T   W   +
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYMASVSQDRTCIIWTQDN 238

Query: 114 FHEVWSVTAGSQEIF-------CFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES 165
               W  T   +E F        +S  G+    LA   G +++  W    + +     E 
Sbjct: 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNV---LALSGGDNKVTLWKENLEGKWEPAGEV 295

Query: 166 H 166
           H
Sbjct: 296 H 296

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 32/144 (22%)

Query: 77  KGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSF----------HE--VWSVTA 122
             H+  ++       G      + +CSSD TI+ ++              HE  VW V  
Sbjct: 6   NAHNEMIHDAVMDYYG----KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-- 59

Query: 123 GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNNQ 180
                  ++       L +     ++  W   N +  Q+A     H   V  V + P+  
Sbjct: 60  ------DWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEY 112

Query: 181 -NKVVSASVDGLIC--TFDTGGDI 201
              ++ AS DG +    F   G  
Sbjct: 113 GPMLLVASSDGKVSVVEFKENGTT 136

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 51/204 (25%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT 121
           V+L    +G  S   +GH   +  +S+S P   ++L + S+D  ++ WD R         
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRR-------- 218

Query: 122 AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN 181
                              A+GC   +   + +  + V     +H   V  + F  +   
Sbjct: 219 -------------------ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL- 258

Query: 182 KVVSASVDG-----------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL 230
            +++   D                       N    L+  ++          F       
Sbjct: 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC--GCSSEFVFVPYGS-- 314

Query: 231 WCLTHIETLSIWDWKDGQNVASFE 254
                  T++++    G+ +   +
Sbjct: 315 -------TIAVYTVYSGEQITMLK 331

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 18/154 (11%), Positives = 38/154 (24%), Gaps = 27/154 (17%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
           +  ++      +     + H   +N +    P     + S  SDG I  +D  +      
Sbjct: 23  STRRVLGLELNKDRDVERIHGGGINTLDIE-PVEGRYMLSGGSDGVIVLYDLENSSRQSY 81

Query: 120 VTAGSQEIF---------------CFSFGGSTDYLLAAGCGSQ---IQFWDWRNKKQVAC 161
            T  +                    +    +   +      S    ++ WD    +    
Sbjct: 82  YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFT--SSSFDKTLKVWDTNTLQTADV 137

Query: 162 LEESHVEDVTQVHFVPNNQNK--VVSASVDGLIC 193
                 E V   H  P +     V   +    + 
Sbjct: 138 FN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 23/108 (21%)

Query: 55  VSLST-NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS 113
           V +   + + +Y+  +G+     KGH  TV+   F   +   +  S S D  I AW    
Sbjct: 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ-SNFQELY-SGSRDCNILAWVPSL 365

Query: 114 -------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWD 152
                                   +          +          W 
Sbjct: 366 YEPVPDDDETTTKS--------QLNPAFED---AWSSSDEEGGTSAWS 402

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 37/158 (23%)

Query: 55  VSLSTNVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIR 107
            +     VK++              +C    + +          P    L       T+ 
Sbjct: 67  YTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL----PDGCTLIVGGEASTLS 122

Query: 108 AWDTRSF----------HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWR 154
            WD  +                +++          S          + C    I  WD  
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYAL--------AISPDSKV---CFSCCSDGNIAVWDLH 171

Query: 155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
           N+  V    + H +  + +    +   K+ +  +D  +
Sbjct: 172 NQTLVRQF-QGHTDGASCIDISNDGT-KLWTGGLDNTV 207

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 31/138 (22%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHE---------- 116
           T +   E    +     ++ S    P   V  SC SDG I  WD  +             
Sbjct: 130 TPRIKAELTSSAPACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHF 175
              +          S  G+    L  G     ++ WD R  +Q+   +      +  + +
Sbjct: 186 ASCI--------DISNDGTK---LWTGGLDNTVRSWDLREGRQLQ--QHDFTSQIFSLGY 232

Query: 176 VPNNQNKVVSASVDGLIC 193
            P  +  +        + 
Sbjct: 233 CPTGE-WLAVGMESSNVE 249

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 30/143 (20%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS------ 113
           + ++         + +GH+   + I  S         L +   D T+R+WD R       
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDIS----NDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 114 ---FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVED 169
                +++S+         +   G     LA G  S  ++        +       H   
Sbjct: 221 HDFTSQIFSL--------GYCPTGEW---LAVGMESSNVEVLHVNKPDKYQL--HLHESC 267

Query: 170 VTQVHFVPNNQNKVVSASVDGLI 192
           V  + F    +   VS   D L+
Sbjct: 268 VLSLKFAYCGK-WFVSTGKDNLL 289

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 26/129 (20%)

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------HEVWSVTAGSQEIF 128
             S        +             D  I     R             V +V        
Sbjct: 7   MGSKPAYSFHVT-ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAV-------- 57

Query: 129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES----HVEDVTQVHFVPNNQNKVV 184
             S        +  G    ++ WD  +    + + +         +     +P+    ++
Sbjct: 58  TISNPTRH---VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLI 113

Query: 185 SASVDGLIC 193
                  + 
Sbjct: 114 VGGEASTLS 122

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 31/145 (21%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF--- 114
           N V+ +    G+   +    +S +  + +     P    L        +           
Sbjct: 205 NTVRSWDLREGRQLQQ-HDFTSQIFSLGYC----PTGEWLAVGMESSNVEVLHVNKPDKY 259

Query: 115 ----HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHV 167
               HE  V S+         F++ G       +      +  W       +   +    
Sbjct: 260 QLHLHESCVLSL--------KFAYCGKW---FVSTGKDNLLNAWRTPYGASIFQSK--ES 306

Query: 168 EDVTQVHFVPNNQNKVVSASVDGLI 192
             V       +++  +V+ S D   
Sbjct: 307 SSVLSCDISVDDK-YIVTGSGDKKA 330

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 39/160 (24%), Positives = 54/160 (33%), Gaps = 34/160 (21%)

Query: 62  VKLYSPVTGQYSGEC--KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSFHEV 117
           VKLY      +      +GH STV  ++F     P    L SCS D T+R W        
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFD----PSGQRLASCSDDRTVRIWRQYLPGNE 229

Query: 118 WSVTAGS-----QEIFCFSFGGSTDY-----------LLAAGCGSQ-IQFWDWRNKKQV- 159
             V         + I   S G  +              LA  CG   I+ +         
Sbjct: 230 QGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ 288

Query: 160 -------ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
                  A L ++H +DV  V + P     + S S DG +
Sbjct: 289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 35/214 (16%), Positives = 70/214 (32%), Gaps = 52/214 (24%)

Query: 62  VKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE- 116
             ++         EC    +GH + V  ++++ PS   +  +CS D ++  W+     E 
Sbjct: 85  TCIWKKNQDD--FECVTTLEGHENEVKSVAWA-PSGNLLA-TCSRDKSVWVWEVDEEDEY 140

Query: 117 ------------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE 163
                       V  V         +         LA+      ++ +       V C  
Sbjct: 141 ECVSVLNSHTQDVKHV--------VWHPSQEL---LASASYDDTVKLYREEEDDWV-CCA 188

Query: 164 --ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVG 221
             E H   V  + F P+ Q ++ S S D  +  +      N+  +  S            
Sbjct: 189 TLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSG----------- 236

Query: 222 FFGETNKHLWCLTHIETLSIWD--W-KDGQNVAS 252
               + K +  L+   + +I+D  W +    +A+
Sbjct: 237 -SDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 60  NVVKLYSPVTGQYSGEC---------KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD 110
           + ++++         +          + HS  VN ++++ P  P +L SCS DG +  W 
Sbjct: 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-PKEPGLLASCSDDGEVAFWK 332

Query: 111 TRS 113
            + 
Sbjct: 333 YQR 335

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 36/141 (25%)

Query: 69  TGQYSGECKGHS-STVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRSF----------- 114
           +    G    H  S    ++++    P   +L SC  D  IR W T              
Sbjct: 4   SLVLLGRVPAHPDSRCWFLAWN----PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG 59

Query: 115 HE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLE--ESHVED 169
           H+  V  V         +S  G+    LA+    +    W  +N+    C+   E H  +
Sbjct: 60  HQRTVRKV--------AWSPCGNY---LASASFDATTCIWK-KNQDDFECVTTLEGHENE 107

Query: 170 VTQVHFVPNNQNKVVSASVDG 190
           V  V + P+    + + S D 
Sbjct: 108 VKSVAWAPSGN-LLATCSRDK 127

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 43/229 (18%), Positives = 69/229 (30%), Gaps = 37/229 (16%)

Query: 60  NVVKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS 113
           N+VK++   +   +       +GHS  V  +++S P+      L S S D T   W   +
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDN 238

Query: 114 FHEVWSVTAGSQEIF-------CFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES 165
               W  T   +E F        +S  G+    LA   G +++  W            E 
Sbjct: 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNV---LALSGGDNKVTLWK--------ENLEG 287

Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL----ESVINVGTSVGKVG 221
             E   +VH          S         FD       D L     + + N    + +  
Sbjct: 288 KWEPAGEVHQGG-----GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERR 342

Query: 222 FFGETNKHLWCLTHIETLSIWDWKDGQNVASF--ENARSLASDSWTLDD 268
           F        +    +        K G ++     E  R    D   LD 
Sbjct: 343 FTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDK 391

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 35/174 (20%)

Query: 62  VKLY--SPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--------- 110
           +K++     T +      GH   V ++ ++ P    +L SCS DG +  W          
Sbjct: 33  IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI 92

Query: 111 -TRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESH 166
              + H   V SV         ++       LL A    ++   +++     + +  ++H
Sbjct: 93  AVHAVHSASVNSV--------QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144

Query: 167 VEDVTQVHFVP------------NNQNKVVSASVDGLICTFDTGGDINDDDLLE 208
              V    + P                K V+   D L+  +    D     L  
Sbjct: 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 77  KGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSF----------HE--VWSVTA 122
             H+  ++       G      L +CSSD TI+ ++              HE  VW V  
Sbjct: 6   NAHNELIHDAVLDYYG----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD- 60

Query: 123 GSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNN 179
                +     G+    LA+     ++  W   N +  Q+A     H   V  V + P+ 
Sbjct: 61  -----WAHPKFGTI---LASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHE 111

Query: 180 Q-NKVVSASVDGLIC--TFDTGGDI 201
               ++ AS DG +    F   G  
Sbjct: 112 YGPLLLVASSDGKVSVVEFKENGTT 136

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 45/179 (25%)

Query: 62  VKLY--SPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--------- 110
           +K++     T +      GH   V ++ ++ P    +L SCS DG +  W          
Sbjct: 35  IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI 94

Query: 111 -TRSFHE--VWSVTAGSQEIFCFS--FGGSTDYLLAAGCGSQ---IQFWDWRNKKQVACL 162
              + H   V SV         ++    G     L     S    +   +++     + +
Sbjct: 95  AVHAVHSASVNSV--------QWAPHEYGPL---LL--VASSDGKVSVVEFKENGTTSPI 141

Query: 163 E-ESHVEDVTQVHFVP------------NNQNKVVSASVDGLICTFDTGGDINDDDLLE 208
             ++H   V    + P                K V+   D L+  +    D     L  
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%)

Query: 60  NVVKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS 113
           N+VK++   +   +       +GHS  V  +++S P+      L S S D T   W   +
Sbjct: 182 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDN 240

Query: 114 FHEVWSVTAGSQEIF-------CFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEES 165
               W  T   +E F        +S  G+    LA   G +++  W            E 
Sbjct: 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNV---LALSGGDNKVTLWK--------ENLEG 289

Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDT 197
             E   +VH          S         FD 
Sbjct: 290 KWEPAGEVHQGG-----GGSGGGGATSKEFDG 316

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 38/152 (25%)

Query: 74  GEC----KGHSSTVNQISFS--GPSTPHVLHSCSSDGTIRAWDTRSF----------HE- 116
           G        H+  ++       G      L +CSSD TI+ ++              HE 
Sbjct: 1   GSMVVIANAHNELIHDAVLDYYG----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG 56

Query: 117 -VWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKK--QVACLEESHVEDVTQ 172
            VW V       +     G+    LA+     ++  W   N +  Q+A     H   V  
Sbjct: 57  PVWRVD------WAHPKFGTI---LASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNS 106

Query: 173 VHFVPNNQ-NKVVSASVDGLIC--TFDTGGDI 201
           V + P+     ++ AS DG +    F   G  
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 4/123 (3%)

Query: 78  GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFG---G 134
              +     +       + L        I   D+++   +  +   S     + +G    
Sbjct: 78  NPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEV 137

Query: 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194
           +T+Y + A     I F  + +  Q          + +      ++   +   S DG++  
Sbjct: 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDV 196

Query: 195 FDT 197
           ++ 
Sbjct: 197 YNL 199

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 79  HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA----GSQEIFCFSFGG 134
            +    +++ S      V      DG +     +    + ++T        E       G
Sbjct: 33  KTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRG 92

Query: 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK-VVSASVDGLIC 193
             + LL    G+QI   D +  K +  +E     ++  ++       +  + A   G I 
Sbjct: 93  PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152

Query: 194 TFD 196
              
Sbjct: 153 FQS 155

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 22/214 (10%), Positives = 53/214 (24%), Gaps = 22/214 (10%)

Query: 46  PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTP--HVLHSCSS 102
            + +      + +   +   S             S    +             +L   S 
Sbjct: 135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH----KDSLLLALYSP 190

Query: 103 DGTIRAWDTRSFHEVWSV--TAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQV 159
           DG +  ++  S  +  S        +I    F  + + Y +   C   +  +D R     
Sbjct: 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKF--ADNGYWMVVECDQTVVCFDLRKDVGT 248

Query: 160 ACLEESHVED----VTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVIN 212
                  + +            + +N +++ S +     I  FD        D   ++  
Sbjct: 249 LAYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKNWTKDEESALCL 307

Query: 213 VGTSVGKVG--FFGETNKHLWCLTHIETLSIWDW 244
              +                  L   ++ +I   
Sbjct: 308 QSDTADFTDMDVVCGDGGIAAILKTNDSFNIVAL 341

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 29/148 (19%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--------TRS 113
           ++++     +     +GH   +  + +  PS   ++ S S D T+R WD        T S
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLV-SGSGDRTVRIWDLRTGQCSLTLS 204

Query: 114 FHE-VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEES------ 165
             + V +V          S G      +AAG   + ++ WD      V  L+        
Sbjct: 205 IEDGVTTV--------AVSPGDGK--YIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254

Query: 166 HVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           H + V  V F  + Q  VVS S+D  + 
Sbjct: 255 HKDSVYSVVFTRDGQ-SVVSGSLDRSVK 281

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 24/151 (15%), Positives = 36/151 (23%), Gaps = 48/151 (31%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---------------HE--VWS 119
             HS  +             +       T   +   +                H   V  
Sbjct: 12  ANHSKPIPPFLLD--LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 69

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---------------- 163
           V         FS  G     LA GC    Q +   +   VA L                 
Sbjct: 70  V--------KFSNDGEY---LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118

Query: 164 -ESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
             S    +  V F P+ +  + + + D LI 
Sbjct: 119 SPSSDLYIRSVCFSPDGK-FLATGAEDRLIR 148

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 30/138 (21%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTP--HVLHSCSSDGTIRAWDTRS----------FHE 116
               +         +  + FS    P    L + + D  IR WD  +            +
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFS----PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 167

Query: 117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLEESHVEDVTQVHF 175
           ++S+         +   G     L +G G + ++ WD R  +    L     + VT V  
Sbjct: 168 IYSL--------DYFPSGDK---LVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAV 214

Query: 176 VPNNQNKVVSASVDGLIC 193
            P +   + + S+D  + 
Sbjct: 215 SPGDGKYIAAGSLDRAVR 232

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 64  LYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD--------T 111
           LY+P   +           H+S V  + FS       L +   + T + +          
Sbjct: 44  LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLAT-GCNKTTQVYRVSDGSLVAR 100

Query: 112 RSFHEVWSVTAGSQEIF------------CFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQ 158
            S     +    +                CFS  G     LA G     I+ WD  N+K 
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF---LATGAEDRLIRIWDIENRKI 157

Query: 159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           V  L+  H +D+  + + P+   K+VS S D  + 
Sbjct: 158 VMILQG-HEQDIYSLDYFPSGD-KLVSGSGDRTVR 190

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 43/160 (26%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-------- 113
           V+++   TGQ S         V  ++ S P     + + S D  +R WD+ +        
Sbjct: 189 VRIWDLRTGQCSLTLSIEDG-VTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246

Query: 114 ---------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-IQFWDWRNKKQVACLE 163
                       V+SV         F+  G +   + +G   + ++ W+ +N    +  +
Sbjct: 247 SENESGTGHKDSVYSV--------VFTRDGQS---VVSGSLDRSVKLWNLQNANNKSDSK 295

Query: 164 ES-----------HVEDVTQVHFVPNNQNKVVSASVDGLI 192
                        H + V  V    N++  ++S S D  +
Sbjct: 296 TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGV 334

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 62  VKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH----VLHSCSSDGTIRAWDTRS 113
           V  +   +G      +GH ++V  ++ +  S+      V  + S D   R W  + 
Sbjct: 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 44/222 (19%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-------------------SFHEV 117
           K H + +  +S           SCS DG ++ WD +                     H V
Sbjct: 13  KAHDADIFSVSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68

Query: 118 ---WSVTAGSQE---IFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVT 171
               ++   + E   +   SF G   +          +    +     + + + H     
Sbjct: 69  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-KKHSFWAL 127

Query: 172 QVHFVPNNQN--KVVSASVDGLICTFD-TGGDINDDDLLESVINVGTSVGKVGFFGETNK 228
           +     +     ++V+  V G    +         + L  +        G V      ++
Sbjct: 128 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187

Query: 229 HLWCLT-----------HIETLSIWDWKDGQNVASFENARSL 259
               +            +  T+ I +    + + +FE+  S+
Sbjct: 188 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSM 229

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 22/165 (13%), Positives = 42/165 (25%), Gaps = 24/165 (14%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG-PSTPHVLHSCSSDGTIR 107
           D     ++      K+          + K HS    +   S      H L +    GT  
Sbjct: 92  DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 151

Query: 108 AWDTRSF------HEVWSVTAGSQEIFCFSFGGSTDY----------LLAAGCGSQ-IQF 150
            W    F        +        +    S    + +          L+A G  +  +Q 
Sbjct: 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQI 211

Query: 151 WDWRNKKQVACLE-----ESHVEDVTQVHFVPNNQNKVVSASVDG 190
            +    + +   E      ++   +  V F P     +  A    
Sbjct: 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN 255

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 6/119 (5%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           K     V  + ++ P+ P ++  C +DG+I         +V +    +  +    +    
Sbjct: 146 KDAGGMVIDMKWN-PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG 204

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVA-----CLEESHVEDVTQVHFVPNNQNKVVSASVDG 190
             L        +  +    +++         E  H   V  V ++      +V A+ DG
Sbjct: 205 KQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 23/195 (11%), Positives = 41/195 (21%), Gaps = 46/195 (23%)

Query: 79  HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-----------HEVWSVTAGSQEI 127
               +N+I +            ++D TI+ W                 +       +   
Sbjct: 92  IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151

Query: 128 FCFSFGGSTDY----------------------------LLAAGCGSQIQFWDWRNKKQV 159
                    D                                +    +I  W      + 
Sbjct: 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRS 211

Query: 160 ACL-------EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN 212
             +        E   E +T   F PN+ N  V +S  G I   D       D   +    
Sbjct: 212 FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE 271

Query: 213 VGTSVGKVGFFGETN 227
                 +  F    +
Sbjct: 272 PEDPSNRSFFSEIIS 286

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 40.1 bits (93), Expect = 9e-04
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 30/129 (23%)

Query: 72  YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS 131
                +  +  +    F  P++ +     SS GTIR  D R+                  
Sbjct: 218 KPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRA------------------ 258

Query: 132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL 191
                    +A C    + ++              +  ++ V F  + +  +++      
Sbjct: 259 ---------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD-YLS 307

Query: 192 ICTFDTGGD 200
           +  +D   +
Sbjct: 308 VKVWDLNME 316

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 56  SLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT-IRAWDTRSF 114
           S +T    +            K H++ +  +  +  S   ++ +CS DGT IR + T   
Sbjct: 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD--MVATCSQDGTIIRVFKTEDG 228

Query: 115 HEVWSVTAGS--QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ 158
             V     G    ++    +      L        +  ++  N + 
Sbjct: 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 12/111 (10%), Positives = 25/111 (22%), Gaps = 6/111 (5%)

Query: 69  TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF 128
           T          S+ V    F+   +       S+  +   ++      + S         
Sbjct: 8   TRNPIVPENHVSNPVTDYEFNQDQS---CLILSTLKSFEIYNVHPVAHIMSQEMRHLSKV 64

Query: 129 CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN 179
                 +       G    +  WD   K+ V+         V  +      
Sbjct: 65  RMLHRTNY-VAFVTGVKEVVHIWDDVKKQDVS--RIKVDAPVKDLFLSREF 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.31
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.31
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.22
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.12
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.01
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.96
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.92
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.86
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.83
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.56
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.56
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.5
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.49
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.36
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.27
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.23
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
3ott_A	758	Two-component system sensor histidine kinase; beta	98.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.79
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.79
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.75
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.62
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.61
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.51
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.32
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.24
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.24
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.22
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.16
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.07
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.03
3ott_A	758	Two-component system sensor histidine kinase; beta	97.0
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.96
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.57
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.48
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.87
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.65
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.6
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.47
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.02
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.25
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	89.57
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.64
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.62
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.83
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.29
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.31
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	82.06
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.1

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-51  Score=367.65  Aligned_cols=289  Identities=19%  Similarity=0.289  Sum_probs=267.0

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ...+.+ .+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++  ++|++|+.|++|++||
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~--~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG--KLLASCSADMTIKLWD  178 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS--SEEEEEETTSCCCEEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC--CEEEEEeCCCeEEEEe
Confidence            344556 8899999999999999999999999999999999999999999999999999998  7999999999999999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      +.+++++..+.+|...|.+++|+|++..+++++.|+.|++||++++..+..+. +|...|.++.++|++. +|++|+.|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~-~l~s~s~D~  256 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSNDQ  256 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCC-EEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999998 8999999999999995 999999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecCC-------------------CcEEEEEecCCcEEEEEcCCCceeE
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET-------------------NKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      .|++||++++    .....+..|...|.+++|+|..                   +.+|++++.|+.|++||+++++++.
T Consensus       257 ~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          257 TVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             CEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            9999999854    4556677899999999999532                   5689999999999999999999999


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPS  331 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  331 (389)
                      .+.+            |...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|...|.++     
T Consensus       333 ~~~~------------h~~~v~~v~~~~~g~--~l~s~s~D~~i~vwd~~~~~~------~~~~~-~h~~~v~~l-----  386 (410)
T 1vyh_C          333 TLVG------------HDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRC------MKTLN-AHEHFVTSL-----  386 (410)
T ss_dssp             EEEC------------CSSCEEEEEECSSSS--CEEEEETTTEEEEECCTTSCC------CEEEE-CCSSCEEEE-----
T ss_pred             EEEC------------CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCce------EEEEc-CCCCcEEEE-----
Confidence            8887            779999999999999  889999999999999988765      67775 999999999     


Q ss_pred             ccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          332 VQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       332 ~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                          +|+|++.+|+||+.||+|++|++
T Consensus       387 ----~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          387 ----DFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----EECSSSSCEEEEETTSEEEEEC-
T ss_pred             ----EEcCCCCEEEEEeCCCcEEEEeC
Confidence                99999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.3e-50  Score=347.71  Aligned_cols=289  Identities=14%  Similarity=0.203  Sum_probs=261.2

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ...++.+ .+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++  ++|++|+.|+.|++|
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~d~~v~iw  124 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG--NYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS--SEEEEEETTCEEEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC--CEEEEEeCCCeEEEE
Confidence            4566777 8999999999999999999999999999999999999999999999999999999  799999999999999


Q ss_pred             EccCC----eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          110 DTRSF----HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       110 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ++.+.    .....+.+|...|.++.|+++ +.+++++.|+.|++||+++++.+..+. +|...|.+++|+|++. ++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s  201 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTR-LFVS  201 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCC-EEEE
Confidence            99865    466778899999999999954 568999999999999999999999998 8999999999999995 9999


Q ss_pred             EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      |+.|+.|++||++++    .....+..|...|.+++|+ +++.+|++++.|+.|++||+++++.+..+....        
T Consensus       202 g~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--------  268 (340)
T 1got_B          202 GACDASAKLWDVREG----MCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDN--------  268 (340)
T ss_dssp             EETTSCEEEEETTTC----SEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------
T ss_pred             EeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC--------
Confidence            999999999999854    4566777899999999999 788999999999999999999988877765322        


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW  345 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~  345 (389)
                        +...+.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|...|.++         +|+|+|.+|+
T Consensus       269 --~~~~v~~~~~s~~g~--~l~~g~~d~~i~vwd~~~~~~------~~~~~-~h~~~v~~~---------~~s~dg~~l~  328 (340)
T 1got_B          269 --IICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADR------AGVLA-GHDNRVSCL---------GVTDDGMAVA  328 (340)
T ss_dssp             --CCSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCE------EEEEE-CCSSCEEEE---------EECTTSSCEE
T ss_pred             --cccceEEEEECCCCC--EEEEECCCCeEEEEEcccCcE------eeEee-cCCCcEEEE---------EEcCCCCEEE
Confidence              345799999999999  899999999999999988765      56665 999999999         9999999999


Q ss_pred             EecCCCeEEEEe
Q 016457          346 TGGEDGRLCCWL  357 (389)
Q Consensus       346 s~~~dg~v~iW~  357 (389)
                      ||+.||.|++|+
T Consensus       329 s~s~D~~i~iWd  340 (340)
T 1got_B          329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCccEEecC
Confidence            999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-50  Score=345.26  Aligned_cols=288  Identities=15%  Similarity=0.260  Sum_probs=261.0

Q ss_pred             eeeec-CcceEEEeecCC----CCeEEEEecCCeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           33 QTNFG-DDYVFEIVPKND----WSLMAVSLSTNVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      +.+.+ .+.|++++|+|+    +.+|++|+.|++|+||++.+++.  ...+.+|...|.+++|++++  .++++++.|++
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~--~~l~s~s~D~~  103 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL--PIAASSSLDAH  103 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC--CEEEEEeCCCc
Confidence            34445 899999999985    56899999999999999887653  45688999999999999998  79999999999


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      |++||+.+++.+..+..+...+.+++|+|++..+++++.|+.|++||+++++....+. .|...+.+++|+|+++ +|++
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~-~las  181 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGK-YLAS  181 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSS-EEEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCC-EEEE
Confidence            9999999999999999998999999999999999999999999999999999988888 7889999999999996 9999


Q ss_pred             EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      |+.|+.|++||++++    ..+..+..|..+|.+++|+ +++.+|++++.|+.|++||+++++....+.+          
T Consensus       182 g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------  246 (321)
T 3ow8_A          182 GAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSG----------  246 (321)
T ss_dssp             EETTSCEEEEETTTT----EEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECC----------
T ss_pred             EcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcC----------
Confidence            999999999999854    4566777899999999999 7889999999999999999999998888876          


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW  345 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~  345 (389)
                        |...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|...|.++         +|+|++++|+
T Consensus       247 --h~~~v~~~~~sp~~~--~l~s~s~D~~v~iwd~~~~~~------~~~~~-~h~~~v~~v---------~~s~~g~~l~  306 (321)
T 3ow8_A          247 --HASWVLNVAFCPDDT--HFVSSSSDKSVKVWDVGTRTC------VHTFF-DHQDQVWGV---------KYNGNGSKIV  306 (321)
T ss_dssp             --CSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE------EEEEC-CCSSCEEEE---------EECTTSSEEE
T ss_pred             --CCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCEE------EEEEc-CCCCcEEEE---------EECCCCCEEE
Confidence              779999999999999  889999999999999998776      66665 899999999         9999999999


Q ss_pred             EecCCCeEEEEecc
Q 016457          346 TGGEDGRLCCWLSD  359 (389)
Q Consensus       346 s~~~dg~v~iW~~~  359 (389)
                      +++.||.|++|++.
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            99999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5e-49  Score=336.63  Aligned_cols=293  Identities=17%  Similarity=0.191  Sum_probs=255.8

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ..+++.+ .+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++  ++|++|+.|++|++|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK--NWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG--TEEEEEETTSEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC--CEEEEECCCCEEEEE
Confidence            3456666 8899999999999999999999999999999999999999999999999999999  799999999999999


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      |+.+++.+..+.+|...|.+++|+|++..+++++.|+.|++||++++.. ...+. +|...|.+++|+|.+...|++|+.
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEET
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEeC
Confidence            9999999999999999999999999999999999999999999998744 45565 899999999999964459999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEec-CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG-ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      |+.|++||+++..   ........+...+..+.|+| +++.+|++++.|++|++||+++++++..+.+            
T Consensus       162 D~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~------------  226 (304)
T 2ynn_A          162 DRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG------------  226 (304)
T ss_dssp             TSEEEEEETTCSS---CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC------------
T ss_pred             CCeEEEEECCCCC---ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC------------
Confidence            9999999998542   12222334567889999985 3677999999999999999999999999987            


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce--eEE
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI--FGW  345 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~--~l~  345 (389)
                      |...|..++|+|+++  +|++|+.||.|++||+.+++.      +..+. .|...+.++         +|+|++.  +++
T Consensus       227 h~~~v~~~~~~p~~~--~l~s~s~Dg~i~iWd~~~~~~------~~~~~-~~~~~~~~~---------~~~~~~~~~~~a  288 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV------EKTLN-VGLERSWCI---------ATHPTGRKNYIA  288 (304)
T ss_dssp             CSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCE------EEEEC-CSSSSEEEE---------EECTTCGGGCEE
T ss_pred             CCCCEEEEEECCCCC--EEEEEcCCCeEEEEECCCCce------eeecc-CCCccEEEE---------EECCCCCceEEE
Confidence            779999999999999  899999999999999998876      56665 888899999         8888775  578


Q ss_pred             EecCCCeEEEEeccC
Q 016457          346 TGGEDGRLCCWLSDD  360 (389)
Q Consensus       346 s~~~dg~v~iW~~~~  360 (389)
                      +|+.|| +.+|++..
T Consensus       289 sg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          289 SGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EEETTE-EEEEECC-
T ss_pred             EecCCc-eEEEEecc
Confidence            877555 66787753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-50  Score=348.65  Aligned_cols=298  Identities=12%  Similarity=0.091  Sum_probs=240.4

Q ss_pred             EEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc-----------eeeeeecCCCCcEEEEEEeC
Q 016457           23 IKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG-----------QYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        23 i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----------~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .+.|++....  ... ...|.+++|+|||++|++++ |+++++||....           ........|...|.+++|+|
T Consensus        16 ~r~w~~~~~~--~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           16 AREWNLPPNA--PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             -------CCS--CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccccCCCCCC--cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            4677764321  112 56799999999999998887 778888873211           11112223667899999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCCeEEE----EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSFHEVW----SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      ++   .|++|+.||+|+|||+.+++.+.    .+.+|...|++++|+|++..|++++.|+.|++||+++++.+..+. +|
T Consensus        93 d~---~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h  168 (344)
T 4gqb_B           93 ER---GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AH  168 (344)
T ss_dssp             TT---EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CC
T ss_pred             CC---eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-Cc
Confidence            86   78999999999999999886543    345799999999999999999999999999999999999999998 89


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      ...|++++|+|++..+|++++.|+.|++||++++.    ....+  ..+...+.+++|+|.++.+|++++.|+.|++||+
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccc----eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            99999999999987689999999999999999653    23322  3355678999999778889999999999999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR  324 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~  324 (389)
                      ++++++..+.+            |...|.+++|+|++.+ +|++|+.||.|+|||+.+++.       ..+. +|...|+
T Consensus       245 ~~~~~~~~~~~------------h~~~v~~v~fsp~g~~-~lasgs~D~~i~vwd~~~~~~-------~~~~-~H~~~V~  303 (344)
T 4gqb_B          245 KSTSCVLSSAV------------HSQCVTGLVFSPHSVP-FLASLSEDCSLAVLDSSLSEL-------FRSQ-AHRDFVR  303 (344)
T ss_dssp             CC--CCEEEEC------------CSSCEEEEEECSSSSC-CEEEEETTSCEEEECTTCCEE-------EEEC-CCSSCEE
T ss_pred             CCCcEEEEEcC------------CCCCEEEEEEccCCCe-EEEEEeCCCeEEEEECCCCcE-------EEEc-CCCCCEE
Confidence            99999999987            7799999999999854 689999999999999998765       5554 9999999


Q ss_pred             eccCCCcccCCCCCCCcee-EEEecCCCeEEEEeccCC
Q 016457          325 SVLPMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~~~  361 (389)
                      ++         +|+|+++. |+|||.||+|++|+++..
T Consensus       304 ~v---------~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          304 DA---------TWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EE---------EECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EE---------EEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            99         99999874 679999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-50  Score=352.23  Aligned_cols=306  Identities=13%  Similarity=0.129  Sum_probs=241.1

Q ss_pred             CCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEec------CCeEEEEeCCCceeee----eecCCCCcEEEE
Q 016457           18 DNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLS------TNVVKLYSPVTGQYSG----ECKGHSSTVNQI   86 (389)
Q Consensus        18 ~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~----~~~~~~~~v~~i   86 (389)
                      +.+.....|++...  ...+ ...|++++|+|||++||+|+.      |+.|++|+..++....    ...+|...|.++
T Consensus        23 ~g~~~~~~w~~p~~--~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~  100 (357)
T 4g56_B           23 NGSSKGSAWGRPVT--APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDV  100 (357)
T ss_dssp             -------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEE
T ss_pred             CCCccccccCCCCC--CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEE
Confidence            34455677775421  1223 788999999999999999997      7789999987765433    335688999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEE----EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW----SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      +|+|++   .+++++.||+|+|||+.+++...    ...+|...|++++|+|++..|++++.|+.|++||+++++.+..+
T Consensus       101 ~~s~d~---~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          101 AWVSEK---GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             EEETTT---EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEcCCC---CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999987   67788899999999998876543    34478899999999999999999999999999999999999999


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      . +|...|++++|+|+++.++++++.|+.|++||++++..  ........+...+.+++|+|.++.+|++++.|+.|++|
T Consensus       178 ~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          178 N-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             C-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             c-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            8 89999999999999866899999999999999996531  11223344667899999997677899999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV  322 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  322 (389)
                      |+++++.+..+..            |...|.+++|+|++.+ +|++|+.||.|+|||+.+++.       .... +|...
T Consensus       255 d~~~~~~~~~~~~------------~~~~v~~l~~sp~~~~-~lasgs~D~~i~iwd~~~~~~-------~~~~-~H~~~  313 (357)
T 4g56_B          255 NIKNPDSAQTSAV------------HSQNITGLAYSYHSSP-FLASISEDCTVAVLDADFSEV-------FRDL-SHRDF  313 (357)
T ss_dssp             ESSCGGGCEEECC------------CSSCEEEEEECSSSSC-CEEEEETTSCEEEECTTSCEE-------EEEC-CCSSC
T ss_pred             ECCCCcEeEEEec------------cceeEEEEEEcCCCCC-EEEEEeCCCEEEEEECCCCcE-------eEEC-CCCCC
Confidence            9999999988886            6689999999999754 689999999999999998775       3444 89999


Q ss_pred             eeeccCCCcccCCCCCC-CceeEEEecCCCeEEEEeccCC
Q 016457          323 VRSVLPMPSVQGRPAQS-HGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       323 v~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |+++         +|+| ++.+|+|||.||+|++|++...
T Consensus       314 V~~v---------afsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          314 VTGV---------AWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEE---------EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEE---------EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999         9998 8999999999999999999754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.2e-49  Score=341.91  Aligned_cols=291  Identities=16%  Similarity=0.193  Sum_probs=261.1

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      +...++.+ .+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++  .+|++|+.|+.+++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g--~~lasg~~d~~i~v  132 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG--CAIACGGLDNKCSV  132 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS--SEEEEESTTSEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC--CEEEEeeCCCCEEE
Confidence            34567777 8999999999999999999999999999999999888899999999999999999  79999999999999


Q ss_pred             EEccCC------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC--CC
Q 016457          109 WDTRSF------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN--NQ  180 (389)
Q Consensus       109 wd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~  180 (389)
                      |++...      .....+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+. +|...|.+++|+|.  + 
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g-  210 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETG-  210 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSC-
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCC-
Confidence            998643      3456778899999999999999999999999999999999999999998 89999999999885  4 


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccc
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLA  260 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  260 (389)
                      +.|++|+.||.|++||++++    ..+..+..|...|.+++|+ +++.+|++++.|++|++||++.++.+..+....   
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~---  282 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKES---  282 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTT---
T ss_pred             CEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---
Confidence            59999999999999999954    4566777899999999999 778899999999999999999988777665432   


Q ss_pred             cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                             +...+.+++|+|++.  +|++|+.|+.|++||+.+++.      +..+. +|...|.++         +|+|+
T Consensus       283 -------~~~~~~~~~~s~~g~--~l~~g~~d~~i~vwd~~~~~~------~~~l~-~h~~~v~~l---------~~spd  337 (354)
T 2pbi_B          283 -------IIFGASSVDFSLSGR--LLFAGYNDYTINVWDVLKGSR------VSILF-GHENRVSTL---------RVSPD  337 (354)
T ss_dssp             -------CCSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCSE------EEEEC-CCSSCEEEE---------EECTT
T ss_pred             -------cccceeEEEEeCCCC--EEEEEECCCcEEEEECCCCce------EEEEE-CCCCcEEEE---------EECCC
Confidence                   345788999999999  899999999999999988765      56665 999999999         99999


Q ss_pred             ceeEEEecCCCeEEEEe
Q 016457          341 GIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~  357 (389)
                      |++|++|+.||+|++|+
T Consensus       338 g~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          338 GTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEcCCCCEEecC
Confidence            99999999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-48  Score=363.44  Aligned_cols=313  Identities=16%  Similarity=0.178  Sum_probs=259.8

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-------CCCCc
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-------GHSST   82 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-------~~~~~   82 (389)
                      ..++++.|++|++|+..  +...++.+ .+.|++++|+|++++||+|+.|++|++||+.+++.+..+.       +|.+.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            37899999999999975  35566776 8899999999999999999999999999999998887774       79999


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE-------------------------------------------
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS-------------------------------------------  119 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------------------------------  119 (389)
                      |.+++|+|++  ++|++++.|++|++||+.+++.+..                                           
T Consensus       242 V~~v~~spdg--~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~  319 (611)
T 1nr0_A          242 VFGLTWSPDG--TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV  319 (611)
T ss_dssp             EEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEEECCCC--CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence            9999999999  7999999999999999988765543                                           


Q ss_pred             EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-----------------------------------
Q 016457          120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-----------------------------------  164 (389)
Q Consensus       120 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------------------------------  164 (389)
                      +.+|...|++++|+|++..+++++.|+.|++||+.+++....+..                                   
T Consensus       320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG  399 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence            346888999999999999999999999999999987644322100                                   


Q ss_pred             ----------------------------------------------cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          165 ----------------------------------------------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       165 ----------------------------------------------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                                                                    .|...+.+++|+|+++ +|++|+.|+.|++||+.
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~  478 (611)
T 1nr0_A          400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLS  478 (611)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEE
T ss_pred             ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEcc
Confidence                                                          1234577899999996 99999999999999998


Q ss_pred             CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecc
Q 016457          199 GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHY  277 (389)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (389)
                      ++.  ...... ..|...|.+++|+ |++++|++++.|++|++|++.+ ++........          .|...|.+++|
T Consensus       479 ~~~--~~~~~~-~~h~~~v~~v~fs-pdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~----------~H~~~V~~v~f  544 (611)
T 1nr0_A          479 GAS--VSEVKT-IVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWT----------FHTAKVACVSW  544 (611)
T ss_dssp             TTE--EEEEEE-EECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC----------CCSSCEEEEEE
T ss_pred             CCc--eeeeec-cCCCCceEEEEEC-CCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee----------ecccceeEEEE
Confidence            431  111222 6788999999999 7899999999999999999987 5443321100          17799999999


Q ss_pred             cCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEE
Q 016457          278 PGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW  356 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW  356 (389)
                      +|+|+  +|++|+.|+.|++|++.++..     .+.....+| ...|.++         +|+|+++ |++|+.||+|++|
T Consensus       545 spdg~--~lasgs~D~~v~lW~~~~~~~-----~~~~~~~~h~~~~v~~v---------~fs~d~~-l~s~~~D~~i~lW  607 (611)
T 1nr0_A          545 SPDNV--RLATGSLDNSVIVWNMNKPSD-----HPIIIKGAHAMSSVNSV---------IWLNETT-IVSAGQDSNIKFW  607 (611)
T ss_dssp             CTTSS--EEEEEETTSCEEEEETTCTTS-----CCEEETTSSTTSCEEEE---------EEEETTE-EEEEETTSCEEEE
T ss_pred             CCCCC--EEEEEECCCcEEEEECCCccc-----ccchhhccCcccCeeEE---------EEcCCCE-EEEecCCCCEEEE
Confidence            99999  899999999999999987653     121334589 8999999         9999999 9999999999999


Q ss_pred             ecc
Q 016457          357 LSD  359 (389)
Q Consensus       357 ~~~  359 (389)
                      ++.
T Consensus       608 ~~~  610 (611)
T 1nr0_A          608 NVP  610 (611)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6e-49  Score=346.71  Aligned_cols=312  Identities=14%  Similarity=0.175  Sum_probs=264.1

Q ss_pred             eEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEE
Q 016457           22 SIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLH   98 (389)
Q Consensus        22 ~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~   98 (389)
                      .+..|+..  .+.+++.+ .+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++  ++|+
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g--~~la  124 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG--QSVA  124 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS--SEEE
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC--CEEE
Confidence            33445543  35567777 8999999999999999999999999999999999999999999999999999999  7999


Q ss_pred             EEecCCeEEEEEccCCe-------EEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCceeeeee----ecc
Q 016457           99 SCSSDGTIRAWDTRSFH-------EVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACLE----ESH  166 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~  166 (389)
                      +|+.|+.+++||+.+..       ....+.+|...|.++.|.|+++ .+++++.|+.|++||+++++.+..+.    .+|
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence            99999999999987532       3456778999999999998754 58888889999999999998887662    278


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ...|.+++|++.+.++|++|+.|+.|++||++..   ...+..+.+|...|.+++|+ +++.+|++++.|++|++||+++
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---CCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETTT
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---CcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECCC
Confidence            8999999998844469999999999999999832   24566778899999999999 7889999999999999999999


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEE---ecccceee
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL---VGGHTAVV  323 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~---~~~h~~~v  323 (389)
                      ++.+..+........     .+...+.+++|+|+|+  +|++|+.||.|++||+.+++.      +..+   ..+|...|
T Consensus       281 ~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~h~~~v  347 (380)
T 3iz6_a          281 GHQLQVYNREPDRND-----NELPIVTSVAFSISGR--LLFAGYSNGDCYVWDTLLAEM------VLNLGTLQNSHEGRI  347 (380)
T ss_dssp             TEEEEEECCCCSSSC-----CSSCSCSEEEECSSSS--EEEEECTTSCEEEEETTTCCE------EEEECCSCSSCCCCC
T ss_pred             CcEEEEecccccccc-----cccCceEEEEECCCCC--EEEEEECCCCEEEEECCCCce------EEEEecccCCCCCce
Confidence            998888765321110     1334588999999999  899999999999999987765      3333   24799999


Q ss_pred             eeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          324 RSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .++         +|+|+|++|+||+.||+|++|++...
T Consensus       348 ~~l---------~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          348 SCL---------GLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CEE---------EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEE---------EECCCCCEEEEeeCCCCEEEEecCCC
Confidence            999         99999999999999999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.4e-47  Score=326.87  Aligned_cols=291  Identities=23%  Similarity=0.410  Sum_probs=256.0

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ..++.+ .+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++  ++|++++.|+.|++||
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEE
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC--CEEEEECCCCEEEEEE
Confidence            345556 8899999999999999999999999999999999999999999999999999998  7999999999999999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      +.+++.+..+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+. .|..+|.+++|+|++. +|++++.|+
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~  171 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSYDG  171 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCC-EEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999888 8999999999999995 999999999


Q ss_pred             cEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          191 LICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      .|++||++++    ..+..+ ..+...+..++|+ +++++|++++.|+.|++||+.+++.+..+..+.          ..
T Consensus       172 ~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~  236 (312)
T 4ery_A          172 LCRIWDTASG----QCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK----------NE  236 (312)
T ss_dssp             CEEEEETTTC----CEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECSSC----------CS
T ss_pred             cEEEEECCCC----ceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC----------Cc
Confidence            9999999854    233333 3455678999999 788999999999999999999999988887643          11


Q ss_pred             Cceeeeccc-CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          270 DYFVDCHYP-GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       270 ~~i~~~~~~-~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                      .......++ +++.  +|++|+.||.|++||+.+++.      +..+. +|...|.++         +|+|++.+|++++
T Consensus       237 ~~~~~~~~~~~~~~--~l~sg~~dg~i~vwd~~~~~~------~~~~~-~h~~~v~~~---------~~~p~~~~l~s~~  298 (312)
T 4ery_A          237 KYCIFANFSVTGGK--WIVSGSEDNLVYIWNLQTKEI------VQKLQ-GHTDVVIST---------ACHPTENIIASAA  298 (312)
T ss_dssp             SSCCCEEEECSSSC--EEEECCTTSCEEEEETTTCCE------EEEEC-CCSSCEEEE---------EECSSSSEEEEEE
T ss_pred             eEEEEEEEEeCCCc--EEEEECCCCEEEEEECCCchh------hhhhh-ccCCcEEEE---------eecCcCCceEEEE
Confidence            222233344 4566  889999999999999998776      56665 999999999         9999999999986


Q ss_pred             --CCCeEEEEecc
Q 016457          349 --EDGRLCCWLSD  359 (389)
Q Consensus       349 --~dg~v~iW~~~  359 (389)
                        .|+.|++|+.+
T Consensus       299 ~~~d~~i~~W~~d  311 (312)
T 4ery_A          299 LENDKTIKLWKSD  311 (312)
T ss_dssp             CTTTCCEEEEECC
T ss_pred             ccCCccEEEecCC
Confidence              69999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.8e-48  Score=359.95  Aligned_cols=307  Identities=13%  Similarity=0.164  Sum_probs=260.0

Q ss_pred             CeEEEEecCceeeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEE
Q 016457           21 NSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLH   98 (389)
Q Consensus        21 ~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~   98 (389)
                      +.|++|+.++....+.+ ...|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++  ++|+
T Consensus       129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~la  206 (611)
T 1nr0_A          129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFA  206 (611)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEE
T ss_pred             eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEE
Confidence            58999998888888888 88999999999987 59999999999999999999999999999999999999999  7999


Q ss_pred             EEecCCeEEEEEccCCeEEEEEE-------cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--------
Q 016457           99 SCSSDGTIRAWDTRSFHEVWSVT-------AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--------  163 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------  163 (389)
                      +|+.|++|++||+.+++.+..+.       +|...|.+++|+|++..|++++.|++|++||+++++.+.++.        
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            99999999999999999988884       689999999999999999999999999999998876543321        


Q ss_pred             ----------------------------------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc----
Q 016457          164 ----------------------------------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD----  205 (389)
Q Consensus       164 ----------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----  205 (389)
                                                        .+|...|++++|+|+++ +|++++.|+.|++||+.++.....    
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~  365 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDV  365 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccC
Confidence                                              26889999999999996 999999999999999875421000    


Q ss_pred             ---cc-----------------------------------------------------------------------eeee
Q 016457          206 ---LL-----------------------------------------------------------------------ESVI  211 (389)
Q Consensus       206 ---~~-----------------------------------------------------------------------~~~~  211 (389)
                         .+                                                                       ....
T Consensus       366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~  445 (611)
T 1nr0_A          366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV  445 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred             CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence               00                                                                       0000


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .+...+.+++|+ +++++|++++.|++|++||+.++...  .. ..            |...|.+++|+|+|+  +|+++
T Consensus       446 ~~~~~v~~va~s-pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~------------h~~~v~~v~fspdg~--~las~  509 (611)
T 1nr0_A          446 PISYNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV------------HPAEITSVAFSNNGA--FLVAT  509 (611)
T ss_dssp             ECSSCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE------------CSSCEEEEEECTTSS--EEEEE
T ss_pred             ecCCCceEEEEe-CCCCEEEEeCCCCeEEEEEccCCceeeeec-cC------------CCCceEEEEECCCCC--EEEEE
Confidence            123456789999 78899999999999999999876432  22 22            779999999999999  89999


Q ss_pred             cCCceEEEEEecc-CCccccCCCeEE-EecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          290 TGAGTVGYFPVNY-GGAATIGPPEAV-LVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       290 ~~dg~i~i~~~~~-~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.|+.|++|++.+ ++.      +.. +..+|...|.++         +|+|||++|+||+.|++|++|+++..
T Consensus       510 s~d~~v~~w~~~~~~~~------~~~~~~~~H~~~V~~v---------~fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          510 DQSRKVIPYSVANNFEL------AHTNSWTFHTAKVACV---------SWSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             ETTSCEEEEEGGGTTEE------SCCCCCCCCSSCEEEE---------EECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cCCCCEEEEEcCCCCce------eeeeeeeecccceeEE---------EECCCCCEEEEEECCCcEEEEECCCc
Confidence            9999999999987 433      121 233599999999         99999999999999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-47  Score=326.18  Aligned_cols=289  Identities=15%  Similarity=0.221  Sum_probs=249.6

Q ss_pred             eeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCC-----ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC
Q 016457           32 IQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVT-----GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG  104 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg  104 (389)
                      ..++.+ .+.|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|...|.+++|+|++  .+|++|+.|+
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~s~s~D~   87 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--AYALSASWDK   87 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--CEEEEEeCCC
Confidence            345667 8999999999965 8999999999999999864     34567889999999999999999  7999999999


Q ss_pred             eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC----
Q 016457          105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ----  180 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  180 (389)
                      +|++||+.+++.+..+.+|...|.+++|+|++..+++++.|+.|++||++ ++.+..+. +|...|.++.|.|...    
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999996 55667776 8999999999998531    


Q ss_pred             -CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc
Q 016457          181 -NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL  259 (389)
Q Consensus       181 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  259 (389)
                       ..+++++.|+.|++||+++.    .....+.+|...|.+++|+ +++.+|++++.|+.|++||+.+++.+..+..    
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  236 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA----  236 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEEC----
T ss_pred             ccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence             38999999999999999843    4556677899999999999 7889999999999999999999998888763    


Q ss_pred             ccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-------cccceeeeeccCCCcc
Q 016457          260 ASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-------GGHTAVVRSVLPMPSV  332 (389)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~  332 (389)
                               ...+.+++|+|++.  +|++++.+ .+++|++.....      +..+.       ..|...+.++      
T Consensus       237 ---------~~~v~~~~~sp~~~--~la~~~~~-~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~------  292 (319)
T 3frx_A          237 ---------QDEVFSLAFSPNRY--WLAAATAT-GIKVFSLDPQYL------VDDLRPEFAGYSKAAEPHAVSL------  292 (319)
T ss_dssp             ---------CSCEEEEEECSSSS--EEEEEETT-EEEEEEETTEEE------EEEECCCCTTCCGGGCCCEEEE------
T ss_pred             ---------CCcEEEEEEcCCCC--EEEEEcCC-CcEEEEeCcCee------eeccCccccccccCcCcceeEE------
Confidence                     36799999999998  77877655 499999987543      22221       2345667777      


Q ss_pred             cCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          333 QGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       333 ~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                         +|+|||++|++|+.||.|++|++.+
T Consensus       293 ---~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          293 ---AWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---EECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---EECCCCCEEEEeecCceEEEEEEee
Confidence               9999999999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=333.08  Aligned_cols=302  Identities=16%  Similarity=0.187  Sum_probs=248.7

Q ss_pred             eeeeeec-Cc-ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee---eecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           31 SIQTNFG-DD-YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG---ECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~-~~-~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+.++.+ .+ .|.+++|+|++++||+|+.|++|+|||+.+++...   ...+|...|.+++|+|++  ++|++|+.|++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~D~~   84 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASFDAT   84 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEETTSC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEECCCc
Confidence            4456666 44 89999999999999999999999999998775432   236899999999999999  79999999999


Q ss_pred             EEEEEccCC--eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc---eeeeeeecccCCeeEEEEecCCC
Q 016457          106 IRAWDTRSF--HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK---QVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       106 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      |++|++..+  +.+..+.+|...|.+++|+|++..|++++.|+.|++||++++.   .+..+. +|...|.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCCC
Confidence            999998876  4677889999999999999999999999999999999998764   345565 8999999999999996


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc------------
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ------------  248 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------  248 (389)
                       +|++++.|+.|++||.+++.  ......+.+|...|.+++|+ +++++|++++.|++|++|+.....            
T Consensus       164 -~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          164 -LLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             -CEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             -EEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence             99999999999999998431  12345677899999999999 788999999999999999964321            


Q ss_pred             ---eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC--CeEEEecccceee
Q 016457          249 ---NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP--PEAVLVGGHTAVV  323 (389)
Q Consensus       249 ---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~h~~~v  323 (389)
                         ++..+.+           .|...|.+++|+|++.  +|++++.|+.|++|+...........  .......+|...|
T Consensus       240 ~~~~~~~~~~-----------~h~~~v~~v~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V  306 (345)
T 3fm0_A          240 SWKCICTLSG-----------FHSRTIYDIAWCQLTG--ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV  306 (345)
T ss_dssp             EEEEEEEECS-----------SCSSCEEEEEECTTTC--CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE
T ss_pred             ccceeEEecC-----------CCCCcEEEEEEecCCC--EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE
Confidence               1222222           1678999999999998  78999999999999998654211100  1122234899999


Q ss_pred             eeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCC
Q 016457          324 RSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~  361 (389)
                      +++         +|+|++. +|+||+.||+|++|++...
T Consensus       307 ~~v---------~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          307 NCV---------AWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             EEE---------EECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             eEe---------EEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            999         9999984 8999999999999998765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-46  Score=348.61  Aligned_cols=301  Identities=22%  Similarity=0.336  Sum_probs=269.9

Q ss_pred             CCccccCCCCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           12 PKSQSCDNVNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ...++++.++.|++|+.. +.+..+.+ ...|.+++|+|+++.|++++.|+.|++||.. ++.+..+.+|...|.+++|+
T Consensus       275 ~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s  353 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFS  353 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEEC
Confidence            356778899999999986 45566666 8899999999999999999999999999976 45567788899999999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      |++  ++|++++.|+.|++||. +++.+..+..|...|.+++|+|++..+++++.|+.|++||. +++.+..+. +|...
T Consensus       354 ~~g--~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~  428 (577)
T 2ymu_A          354 PDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS  428 (577)
T ss_dssp             TTS--SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSC
T ss_pred             CCC--CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCC
Confidence            999  79999999999999995 57888899999999999999999999999999999999995 577788887 89999


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      |++++|+|++. +|++++.|+.|++||...     ..+..+..|...|.+++|+ +++++|++++.|+.|++||. +++.
T Consensus       429 v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~~~v~~~~~s-pd~~~las~~~d~~i~iw~~-~~~~  500 (577)
T 2ymu_A          429 VWGVAFSPDDQ-TIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQL  500 (577)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSEEEEEET-TSCE
T ss_pred             eEEEEECCCCC-EEEEEcCCCEEEEEECCC-----CEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEcC-CCCE
Confidence            99999999996 999999999999999763     4567778899999999999 78899999999999999995 6788


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM  329 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  329 (389)
                      +..+.+            |...|.+++|+|+++  +|++++.||.|++||.. ++.      +..+. +|...|.++   
T Consensus       501 ~~~~~~------------h~~~v~~l~~s~dg~--~l~s~~~dg~v~lwd~~-~~~------~~~~~-~h~~~v~~~---  555 (577)
T 2ymu_A          501 LQTLTG------------HSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQL------LQTLT-GHSSSVWGV---  555 (577)
T ss_dssp             EEEEEC------------CSSCEEEEEECTTSS--CEEEEETTSEEEEECTT-SCE------EEEEE-CCSSCEEEE---
T ss_pred             EEEEeC------------CCCCEEEEEEcCCCC--EEEEEECcCEEEEEeCC-CCE------EEEEc-CCCCCEEEE---
Confidence            888876            779999999999999  88999999999999964 333      57776 999999999   


Q ss_pred             CcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457          330 PSVQGRPAQSHGIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       330 ~~~~~~~~s~~~~~l~s~~~dg~v~iW~  357 (389)
                            +|+|||++|+|++.||+|++||
T Consensus       556 ------~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          556 ------AFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ------EECTTSSCEEEEETTSCEEEEC
T ss_pred             ------EEcCCCCEEEEEeCCCEEEEeC
Confidence                  9999999999999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-46  Score=331.97  Aligned_cols=291  Identities=19%  Similarity=0.282  Sum_probs=246.1

Q ss_pred             eecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCC------------------cEEEEEEeCCCCCCE
Q 016457           35 NFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS------------------TVNQISFSGPSTPHV   96 (389)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~~~   96 (389)
                      +.+.+.|.+++|+|+|++||+|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|++  ++
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~  137 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--KF  137 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS--SE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--CE
Confidence            33488999999999999999987 68999999999988877765532                  49999999999  79


Q ss_pred             EEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEe
Q 016457           97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFV  176 (389)
Q Consensus        97 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  176 (389)
                      |++|+.|++|++||+.+++.+..+.+|...|.+++|+|++..+++++.|+.|++||+++++....+.  +...+.+++|+
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~  215 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVS  215 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999998888776  67789999999


Q ss_pred             c-CCCCeEEEEeCCCcEEEEecCCCCCCCccceee-------eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          177 P-NNQNKVVSASVDGLICTFDTGGDINDDDLLESV-------INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       177 ~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      | ++ .+|++|+.|+.|++||++++.    .+..+       .+|...|.+++|+ +++.+|++++.|+.|++||+.+..
T Consensus       216 ~~~~-~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          216 PGDG-KYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             STTC-CEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC----
T ss_pred             CCCC-CEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCC
Confidence            9 66 599999999999999998653    22222       4688899999999 788999999999999999997643


Q ss_pred             e------------eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe
Q 016457          249 N------------VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       249 ~------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      .            ...+.+            |...|.+++|+|++.  +|++|+.||.|++||+.+++.      +..+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~--~l~sgs~D~~v~iwd~~~~~~------~~~l~  349 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIG------------HKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNP------LLMLQ  349 (393)
T ss_dssp             -----------CEEEEEEC------------CSSCEEEEEECGGGC--EEEEEETTSEEEEEETTTCCE------EEEEE
T ss_pred             CcccccCCCCCcceEEEec------------ccCcEEEEEECCCCC--EEEEEeCCCeEEEEECCCCeE------EEEEC
Confidence            2            333333            778999999999998  899999999999999998776      56665


Q ss_pred             cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       317 ~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                       +|...|.++.....   ..|+|++.+|+||+.||+|++|++..
T Consensus       350 -~h~~~v~~v~~~~~---~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          350 -GHRNSVISVAVANG---SSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             -CCSSCEEEEEECSS---CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             -CCCCCEEEEEecCC---cCcCCCCCEEEEECCCCcEEECcccc
Confidence             99999999931111   13567899999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-46  Score=323.63  Aligned_cols=295  Identities=15%  Similarity=0.188  Sum_probs=235.1

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeee-cC-CCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGEC-KG-HSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~-~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+..+.+ .+.|++++|+|+  +||+|+.|++|++||+.++  +....+ .+ |...|.+++|+|++  .+|++|+.|++
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~las~s~D~~   81 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--SLLAAGSFDST   81 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS--SEEEEEETTSC
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC--CEEEEEeCCCc
Confidence            4566777 889999999998  9999999999999999875  445555 44 99999999999998  79999999999


Q ss_pred             EEEEEccC-------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC----ceeeeeeecccCCeeEEE
Q 016457          106 IRAWDTRS-------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK----KQVACLEESHVEDVTQVH  174 (389)
Q Consensus       106 i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~  174 (389)
                      |++||+..       .+.+..+.+|...|.+++|+|++.+|++++.|+.|++||++..    +.+..+. +|...|.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEE
Confidence            99999853       4567788999999999999999999999999999999999532    4556676 8999999999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC-CcEEEEEecCCcEEEEEcCCC------
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET-NKHLWCLTHIETLSIWDWKDG------  247 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~------  247 (389)
                      |+|++. +|++++.|+.|++||.+++  ....+..+.+|...|.+++|+|.. +.+|++++.|++|++||+..+      
T Consensus       161 ~~p~~~-~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          161 WHPSEA-LLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             ECSSSS-EEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             ECCCCC-EEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            999995 9999999999999998743  123566777899999999999432 568999999999999998654      


Q ss_pred             --ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-eee
Q 016457          248 --QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-VVR  324 (389)
Q Consensus       248 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~  324 (389)
                        .+...+..           .|...|.+++|++++   +|++++.||.|++|+..+++.    ..+.....+|.. .|.
T Consensus       238 ~~~~~~~~~~-----------~h~~~v~~v~~s~~~---~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~h~~~~v~  299 (330)
T 2hes_X          238 EWVCEAILPD-----------VHKRQVYNVAWGFNG---LIASVGADGVLAVYEEVDGEW----KVFAKRALCHGVYEIN  299 (330)
T ss_dssp             EEEEEEECCS-----------CCSSCEEEEEECTTS---CEEEEETTSCEEEEEEETTEE----EEEEEESCTTTTSCEE
T ss_pred             eeEEeeeccc-----------ccccceEEEEEcCCC---EEEEEeCCCEEEEEEcCCCce----EEEeccccccccceEE
Confidence              22222222           167899999999754   678999999999999987632    012233347876 899


Q ss_pred             eccCCCcccCCCCCC--CceeEEEecCCCeEEEEeccC
Q 016457          325 SVLPMPSVQGRPAQS--HGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~--~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      ++         +|+|  ++++|+||+.||+|++|+++.
T Consensus       300 ~v---------~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          300 VV---------KWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EE---------EEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EE---------EEecCCCceEEEEecCCCcEEEEEecc
Confidence            99         9999  789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-45  Score=320.28  Aligned_cols=294  Identities=19%  Similarity=0.254  Sum_probs=244.0

Q ss_pred             eeeeeec-CcceEEEee-----cC-CCCeEEEEecCCeEEEEeCCC-------ceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           31 SIQTNFG-DDYVFEIVP-----KN-DWSLMAVSLSTNVVKLYSPVT-------GQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~-----~~-~~~~l~~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      ....+.+ .+.|++++|     ++ ++++|++|+.|++|++||+.+       +.+...+.+|...|.+++|+|++  .+
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~   90 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CF   90 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CE
Confidence            4456777 889999999     76 899999999999999999864       34567788999999999999998  79


Q ss_pred             EEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee-eecccCCeeEEEE
Q 016457           97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL-EESHVEDVTQVHF  175 (389)
Q Consensus        97 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~  175 (389)
                      +++|+.|++|++||+++++.+..+.+|...|.+++|+|++..+++++.|+.|++||+......... ...|...|.+++|
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence            999999999999999999999999999999999999999999999999999999999843322221 1258889999999


Q ss_pred             ecCCC---------CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          176 VPNNQ---------NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       176 ~~~~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      +|++.         .+|++++.|+.|++||...     .....+..|...|.+++|+ +++++|++++.|+.|++||+..
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSC
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCC
Confidence            99862         3899999999999999542     3455677899999999999 7889999999999999999944


Q ss_pred             -CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe---------
Q 016457          247 -GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV---------  316 (389)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~---------  316 (389)
                       ......+.             +...|.+++|+|++.  ++++| .|+.|++|++.+++...    +..+.         
T Consensus       245 ~~~~~~~~~-------------~~~~v~~v~~sp~~~--~la~~-~d~~v~iw~~~~~~~~~----~~~~~~~~~~~~~~  304 (343)
T 2xzm_R          245 LTYPQREFD-------------AGSTINQIAFNPKLQ--WVAVG-TDQGVKIFNLMTQSKAP----VCTIEAEPITKAEG  304 (343)
T ss_dssp             CSSCSEEEE-------------CSSCEEEEEECSSSC--EEEEE-ESSCEEEEESSSCCSCS----EEECCCCSGGGBTT
T ss_pred             Ccccceeec-------------CCCcEEEEEECCCCC--EEEEE-CCCCEEEEEeCCCCCCc----eEEeecCcchhhhh
Confidence             34444443             335699999999987  66655 67889999998765411    11111         


Q ss_pred             -cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          317 -GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       317 -~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       .+|...|.++         +|+|+|++|++|+.||.|++|+++.+
T Consensus       305 ~~~~~~~v~~~---------~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          305 QKGKNPQCTSL---------AWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             BCCSCCCEEEE---------EECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hcCCCCceEEE---------EECCCCCeEEEecCCceEEEEEEEcc
Confidence             2677888888         99999999999999999999998643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=317.96  Aligned_cols=267  Identities=17%  Similarity=0.244  Sum_probs=246.3

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      ...++++.|++|++|+...    ....+.+ ...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.++
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  128 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL  128 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCE
T ss_pred             CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEE
Confidence            3578999999999999853    2334566 8899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +|+|++  ++|++|+.||.|++|++++++....+..+...|.+++|+|++..+++++.|+.|++||+++++.+..+. +|
T Consensus       129 ~~spdg--~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h  205 (321)
T 3ow8_A          129 AFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GH  205 (321)
T ss_dssp             EECTTS--SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CC
T ss_pred             EECCCC--CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-cc
Confidence            999999  799999999999999999999999999999999999999999999999999999999999999999998 89


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ..+|++++|+|+++ +|++++.|+.|++||++++    .....+.+|...|.+++|+ +++.+|++++.|++|++||+.+
T Consensus       206 ~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFC-PDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             SSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred             CCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCC
Confidence            99999999999996 9999999999999999854    4566777899999999999 7888999999999999999999


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++++..+.+            |...|.+++|+|+++  +|++++.||.|++||..
T Consensus       280 ~~~~~~~~~------------h~~~v~~v~~s~~g~--~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          280 RTCVHTFFD------------HQDQVWGVKYNGNGS--KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TEEEEEECC------------CSSCEEEEEECTTSS--EEEEEETTCCEEEEECC
T ss_pred             CEEEEEEcC------------CCCcEEEEEECCCCC--EEEEEeCCCeEEEEeCC
Confidence            999999886            669999999999999  88999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.3e-46  Score=330.48  Aligned_cols=267  Identities=19%  Similarity=0.235  Sum_probs=246.3

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      +..++++.|++|++||+.  +...++.+ .+.|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~  200 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI  200 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE
Confidence            346788999999999985  46677777 889999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +|++  ++|++|+.|++|++||++++.++..+.+|...|.++.++|++..+++++.|+.|++||+++++....+. +|..
T Consensus       201 ~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~  277 (410)
T 1vyh_C          201 MPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRH  277 (410)
T ss_dssp             CSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSS
T ss_pred             eCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCc
Confidence            9998  799999999999999999999999999999999999999999999999999999999999999999888 8999


Q ss_pred             CeeEEEEecC--------------------CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          169 DVTQVHFVPN--------------------NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       169 ~v~~~~~~~~--------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      .|.+++|+|+                    + .+|++|+.|+.|++||++++    ..+..+.+|...|.+++|+ +++.
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~-~~g~  351 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFH-SGGK  351 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEC-SSSS
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEc-CCCC
Confidence            9999999996                    4 38999999999999999954    4667778899999999999 7888


Q ss_pred             EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          229 HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +|++++.|+.|++||+.+++++..+..            |...|.+++|+|++.  +|++|+.||.|++|+++
T Consensus       352 ~l~s~s~D~~i~vwd~~~~~~~~~~~~------------h~~~v~~l~~~~~~~--~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          352 FILSCADDKTLRVWDYKNKRCMKTLNA------------HEHFVTSLDFHKTAP--YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEEC------------CSSCEEEEEECSSSS--CEEEEETTSEEEEEC--
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcC------------CCCcEEEEEEcCCCC--EEEEEeCCCcEEEEeCC
Confidence            999999999999999999999998886            779999999999999  88999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-47  Score=338.77  Aligned_cols=323  Identities=14%  Similarity=0.174  Sum_probs=260.3

Q ss_pred             CCCCeEEEEecCc-----eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCC----ceeeeeecCCCCcEEEEEE
Q 016457           18 DNVNSIKRFGLKN-----SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT----GQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        18 ~~~~~i~~w~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~i~~   88 (389)
                      +.|+.|++|++..     .+..+.+...|++++|+|++++|++|+.||.|++||+.+    .+.+..+.+|...|.+++|
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~  121 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF  121 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence            8899999999863     333344478999999999999999999999999999987    3578888999999999999


Q ss_pred             eCC-CCCCEEEEEecCCeEEEEEccCCe------EEEE---EEcCCCCeEEEEEeCC-CCeEEEeecCCeEEEEECcCCc
Q 016457           89 SGP-STPHVLHSCSSDGTIRAWDTRSFH------EVWS---VTAGSQEIFCFSFGGS-TDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        89 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      +|+ +  .+|++++.|+.|++||+.+++      ....   +..|...|.+++|+|+ +..+++++.|+.|++||+++++
T Consensus       122 ~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  199 (416)
T 2pm9_A          122 NAKQD--NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK  199 (416)
T ss_dssp             CSSST--TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred             cCCCC--CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence            998 5  799999999999999999876      3322   3567889999999998 5677888889999999999999


Q ss_pred             eeeeeeecc------cCCeeEEEEecCCCCeEEEEeCCC---cEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCC
Q 016457          158 QVACLEESH------VEDVTQVHFVPNNQNKVVSASVDG---LICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETN  227 (389)
Q Consensus       158 ~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~  227 (389)
                      .+..+. .+      ...|.+++|+|++..++++++.|+   .|++||+++..   .....+. .|...|.+++|+|.++
T Consensus       200 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          200 EVIHLS-YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             EEEEEC-CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCS
T ss_pred             cceEEe-ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCC
Confidence            888887 44      788999999999866999999998   99999999542   3445555 7889999999995488


Q ss_pred             cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC-CeEEEEEecCCceEEEEEeccCCcc
Q 016457          228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG-ENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      .+|++++.|+.|++||+.+++.+..+..            |...+.+++|+|++ .  +|++++.||.|++|++.+....
T Consensus       276 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~--~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          276 HLLLSSGRDNTVLLWNPESAEQLSQFPA------------RGNWCFKTKFAPEAPD--LFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SCEEEEESSSEEEEECSSSCCEEEEEEC------------SSSCCCCEEECTTCTT--EEEECCSSSEEEEEESCCCCCS
T ss_pred             CeEEEEeCCCCEEEeeCCCCccceeecC------------CCCceEEEEECCCCCC--EEEEEecCCcEEEEEccCCCCC
Confidence            9999999999999999999999998886            66899999999998 6  7899999999999999877642


Q ss_pred             ccCCC--------eEEEe--cc---cceeeeec------cCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          307 TIGPP--------EAVLV--GG---HTAVVRSV------LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       307 ~~~~~--------~~~~~--~~---h~~~v~~~------~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      .....        ...+.  .+   |...+..+      +.......++|+|+|++|++++.||.|+||++..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            11000        00000  00   11111111      0011122349999999999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.2e-44  Score=334.29  Aligned_cols=304  Identities=22%  Similarity=0.353  Sum_probs=270.2

Q ss_pred             CCccccCCCCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           12 PKSQSCDNVNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ...++++.|+.|++|+.. +.+..+.+ ...|.+++|+|+++.|++++.|+.|++|+.. ++.+..+.+|...|.+++|+
T Consensus       234 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~  312 (577)
T 2ymu_A          234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFS  312 (577)
T ss_dssp             SCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEEC
Confidence            356788899999999976 45666666 8899999999999999999999999999964 67788899999999999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      |++  .+|++++.|++|++||.. +..+..+..|...|.+++|+|++..+++++.|+.|++||. +++.+..+. +|...
T Consensus       313 ~~~--~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~  387 (577)
T 2ymu_A          313 PDG--QTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS  387 (577)
T ss_dssp             TTS--SEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSC
T ss_pred             CCC--CEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCC
Confidence            999  799999999999999976 4566778889999999999999999999999999999995 577788887 89999


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      |++++|+|+++ +|++++.|+.|++||...     ..+..+..|...|.+++|+ +++++|++++.|+.|++||. +++.
T Consensus       388 v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-~~~~  459 (577)
T 2ymu_A          388 VRGVAFSPDGQ-TIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-NGQL  459 (577)
T ss_dssp             EEEEEECTTSS-CEEEEETTSEEEEECTTC-----CEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TSCE
T ss_pred             eEEEEECCCCC-EEEEEeCCCEEEEEeCCC-----CEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC-CCCE
Confidence            99999999996 999999999999999652     3466778899999999999 78889999999999999996 5677


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM  329 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  329 (389)
                      +..+..            |...+.+++|+|+++  +|++++.|+.|++|+.. ++.      +..+. +|...|+++   
T Consensus       460 ~~~~~~------------~~~~v~~~~~spd~~--~las~~~d~~i~iw~~~-~~~------~~~~~-~h~~~v~~l---  514 (577)
T 2ymu_A          460 LQTLTG------------HSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQL------LQTLT-GHSSSVRGV---  514 (577)
T ss_dssp             EEEEEC------------CSSCEEEEEECTTSC--EEEEEETTSEEEEEETT-SCE------EEEEE-CCSSCEEEE---
T ss_pred             EEEEcC------------CCCCEEEEEEcCCCC--EEEEEeCCCEEEEEcCC-CCE------EEEEe-CCCCCEEEE---
Confidence            777776            669999999999999  89999999999999964 333      56776 999999999   


Q ss_pred             CcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          330 PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       330 ~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                            +|+|+|++|++++.||.|++|+...
T Consensus       515 ------~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          515 ------AFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             ------EECTTSSCEEEEETTSEEEEECTTS
T ss_pred             ------EEcCCCCEEEEEECcCEEEEEeCCC
Confidence                  9999999999999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-44  Score=323.56  Aligned_cols=311  Identities=11%  Similarity=0.066  Sum_probs=267.7

Q ss_pred             CccccCCCCeEEEEec----Cce--------eeeeec-----------CcceEEEeecCCCCeEEEEecCCeEEEEeCCC
Q 016457           13 KSQSCDNVNSIKRFGL----KNS--------IQTNFG-----------DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT   69 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~----~~~--------~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~   69 (389)
                      ..++++.|+.|++|++    ...        ...+..           .+.|++++|+|++++|++|+.||.|++|| .+
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~  138 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT  138 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence            5788999999999999    532        222322           34899999999999999999999999999 66


Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC---------------eEEEEEeC
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE---------------IFCFSFGG  134 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~  134 (389)
                      ++.+..+.+|...|.+++|+|++  .+|++++.|+.|++||+.+++.+..+..+...               +.+++|+|
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDG--THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD  216 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTS--SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred             CCeeeeccCCCccEEEEEECCCC--CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence            88888999999999999999998  79999999999999999999999999887666               99999996


Q ss_pred             CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC
Q 016457          135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG  214 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  214 (389)
                      + +.+++++.++.|++||+++++.+..+. .|...|.+++|+|++. +|++++.|+.|++||++++    ..+..+..|.
T Consensus       217 ~-~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~  289 (425)
T 1r5m_A          217 D-DKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG----NSQNCFYGHS  289 (425)
T ss_dssp             T-TEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB----SCSEEECCCS
T ss_pred             C-CEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC----ccceEecCCC
Confidence            4 678899999999999999999888887 8999999999999996 9999999999999999854    4566667789


Q ss_pred             CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      ..|.+++|+ +++ ++++++.|+.|++||+.+++.+..+..            |...+.+++|+|+++  +|++++.||.
T Consensus       290 ~~i~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~i~~~~~s~~~~--~l~~~~~dg~  353 (425)
T 1r5m_A          290 QSIVSASWV-GDD-KVISCSMDGSVRLWSLKQNTLLALSIV------------DGVPIFAGRISQDGQ--KYAVAFMDGQ  353 (425)
T ss_dssp             SCEEEEEEE-TTT-EEEEEETTSEEEEEETTTTEEEEEEEC------------TTCCEEEEEECTTSS--EEEEEETTSC
T ss_pred             ccEEEEEEC-CCC-EEEEEeCCCcEEEEECCCCcEeEeccc------------CCccEEEEEEcCCCC--EEEEEECCCe
Confidence            999999999 566 999999999999999999998888876            668999999999999  8899999999


Q ss_pred             EEEEEeccCCccc--------------cCCCeEEEecccce--eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          295 VGYFPVNYGGAAT--------------IGPPEAVLVGGHTA--VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       295 i~i~~~~~~~~~~--------------~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      |++|++.+++...              ...++..+. +|..  .|.++         +|+|++++|++++.||.|++|++
T Consensus       354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~---------~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDL---------SWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEE---------EECTTSSEEEEEESSSCCEEEEC
T ss_pred             EEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEE---------EccCCCceEEEEecCceEEEEee
Confidence            9999998766100              001245554 7765  89999         99999999999999999999998


Q ss_pred             c
Q 016457          359 D  359 (389)
Q Consensus       359 ~  359 (389)
                      +
T Consensus       424 ~  424 (425)
T 1r5m_A          424 P  424 (425)
T ss_dssp             C
T ss_pred             c
Confidence            6

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-44  Score=310.47  Aligned_cols=299  Identities=15%  Similarity=0.192  Sum_probs=251.2

Q ss_pred             eeeeeec-CcceEEEeecCC-CCeEEEEecCCeEEEEeCCCc-----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           31 SIQTNFG-DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVTG-----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ...+++| .+.|++++|+|+ +++|++|+.|++|+|||+.++     .+...+.+|...|.+++|+|++  .+|++++.|
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~~d  107 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGSWD  107 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEETT
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEccc
Confidence            3446778 899999999998 589999999999999998764     3566788999999999999999  799999999


Q ss_pred             CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCC-Ce
Q 016457          104 GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQ-NK  182 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  182 (389)
                      +.|++|+............+...+..+.+++.+..+++++.|+.+++||+...........+|...+.+++|++++. .+
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            99999999999999999988899999999999999999999999999999876554443347899999999998753 36


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD  262 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  262 (389)
                      +++++.|+.|++||++++    .....+..|...|.+++|+ +++++|++++.|+.|++||+.+.+.+..+..       
T Consensus       188 ~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------  255 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-------  255 (340)
T ss_dssp             EEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEEC-------
T ss_pred             EEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeeeecC-------
Confidence            789999999999999954    4566777899999999999 7889999999999999999999998888763       


Q ss_pred             CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc--cCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT--IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                            ...+..+.|+|++.   +++++.|+.|++||+.++....  ..........+|...|+++         +|+|+
T Consensus       256 ------~~~v~~~~~~~~~~---~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---------~~s~d  317 (340)
T 4aow_A          256 ------GDIINALCFSPNRY---WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL---------AWSAD  317 (340)
T ss_dssp             ------SSCEEEEEECSSSS---EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE---------EECTT
T ss_pred             ------CceEEeeecCCCCc---eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE---------EECCC
Confidence                  36799999999875   4566689999999998765410  0011111223688889999         99999


Q ss_pred             ceeEEEecCCCeEEEEeccCC
Q 016457          341 GIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |++|++|+.||.|+||++..+
T Consensus       318 g~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          318 GQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             SSEEEEEETTSCEEEEEEEC-
T ss_pred             CCEEEEEeCCCEEEEEeCCCc
Confidence            999999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.6e-44  Score=310.24  Aligned_cols=265  Identities=17%  Similarity=0.224  Sum_probs=236.6

Q ss_pred             CCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcE
Q 016457           11 QPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTV   83 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v   83 (389)
                      ....++++.|++|++||..  +.+..+.. ...|.+++|+|++++|++|+.|+.|++|++.++    +....+.+|...|
T Consensus        67 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v  146 (340)
T 1got_B           67 SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence            3457889999999999975  45666666 888999999999999999999999999999865    3556778999999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  163 (389)
                      .++.|++++   .+++++.|++|++||+.+++.+..+.+|...|.+++|+|++..+++++.|+.|++||++++..+..+.
T Consensus       147 ~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          147 SCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             EEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            999999887   69999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                       +|...|++++|+|++. .|++|+.|+.|++||++++.    .+..+.  .+...|.+++|+ +++.+|++++.|+.|++
T Consensus       224 -~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~d~~i~v  296 (340)
T 1got_B          224 -GHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQ----ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             -CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred             -CCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc----EEEEEccCCcccceEEEEEC-CCCCEEEEECCCCeEEE
Confidence             8999999999999995 99999999999999998542    222222  223479999999 78899999999999999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ||+.+++.+..+.+            |...|.+++|+|++.  +|++|+.||.|++||
T Consensus       297 wd~~~~~~~~~~~~------------h~~~v~~~~~s~dg~--~l~s~s~D~~i~iWd  340 (340)
T 1got_B          297 WDALKADRAGVLAG------------HDNRVSCLGVTDDGM--AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTTCCEEEEEEC------------CSSCEEEEEECTTSS--CEEEEETTSCEEEEC
T ss_pred             EEcccCcEeeEeec------------CCCcEEEEEEcCCCC--EEEEEcCCccEEecC
Confidence            99999999888887            779999999999999  889999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-43  Score=312.06  Aligned_cols=289  Identities=16%  Similarity=0.196  Sum_probs=258.4

Q ss_pred             eeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           33 QTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      ..+.+ .+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++  ++|++++.||.|++||+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT--KYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTTEEEEEET
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEC
Confidence            34556 8899999999999999999999999999999999999999999999999999998  79999999999999999


Q ss_pred             cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCce-----------eeeeeecccC--CeeEE
Q 016457          112 RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQ-----------VACLEESHVE--DVTQV  173 (389)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~-----------~~~~~~~~~~--~v~~~  173 (389)
                      .+++.+..+. +...+.+++|+|++..+++++.+     +.|++||++....           +..+. .|..  .+.++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  181 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAATVA  181 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccceeEE
Confidence            9999999888 77999999999999999999988     9999999987643           23333 4555  89999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          174 HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      +|+|++. .|++++.||.|++||+++.   ...+..+..|...|.+++|+ +++.+|++++.|+.|++||+.+++.+..+
T Consensus       182 ~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          182 GWSTKGK-YIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EECGGGC-EEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCC-EEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCCceeeee
Confidence            9999995 9999999999999999952   35566777789999999999 68899999999999999999999988887


Q ss_pred             ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc--------------eEEEEEeccCCccccCCCeEEEeccc
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG--------------TVGYFPVNYGGAATIGPPEAVLVGGH  319 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg--------------~i~i~~~~~~~~~~~~~~~~~~~~~h  319 (389)
                      .             +...+..++|+|+++  ++++++.++              .+++||..+++.      +..+. +|
T Consensus       257 ~-------------~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~-~~  314 (369)
T 3zwl_B          257 E-------------TDCPLNTAVITPLKE--FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE------IGRVQ-GH  314 (369)
T ss_dssp             E-------------CSSCEEEEEECSSSS--EEEEEECCC-------------CEEEEEETTTCCE------EEEEE-CC
T ss_pred             c-------------CCCCceeEEecCCCc--eEEEeecCCCceEEEEecCCCcceeEEEecCCCcc------hhhee-cc
Confidence            7             347899999999999  888888887              899999998776      56665 89


Q ss_pred             ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          320 TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       320 ~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ...|.++         +|+|++++|++++.||.|++|+++..
T Consensus       315 ~~~v~~~---------~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          315 FGPLNTV---------AISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             SSCEEEE---------EECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             cCcEEEE---------EECCCCCEEEEEcCCCeEEEEECccc
Confidence            9999999         99999999999999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.9e-44  Score=304.76  Aligned_cols=272  Identities=13%  Similarity=0.145  Sum_probs=239.2

Q ss_pred             CCCCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      +.+..++++.|++|++||+.+  .+..+.+ ...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus        24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            445678999999999999863  5666776 8899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCC-CCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGS-TDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      +|+|++  .+|++|+.|++|++||++++ .....+.+|...|.+++|+|. +..+++++.|+.|++||+++......+..
T Consensus       104 ~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~  181 (304)
T 2ynn_A          104 AVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT  181 (304)
T ss_dssp             EECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred             EEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence            999999  79999999999999999987 556778899999999999984 57788888999999999998887777765


Q ss_pred             cccCCeeEEEEec--CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          165 SHVEDVTQVHFVP--NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       165 ~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      .|...+..+.|+|  ++ .+|++++.|+.|++||++++    ..+..+.+|...|..++|+ +++.+|++++.|++|++|
T Consensus       182 ~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          182 GQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             CCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEE
T ss_pred             CCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEEC-CCCCEEEEEcCCCeEEEE
Confidence            6778899999987  55 49999999999999999954    5677788899999999999 778899999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |+.+++.+..+..            |...+.+++|+|++...++++|+.|| +.+|++..
T Consensus       256 d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          256 NSSTYKVEKTLNV------------GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             ETTTCCEEEEECC------------SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             ECCCCceeeeccC------------CCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            9999999999876            55889999999988765678887666 77777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-43  Score=308.13  Aligned_cols=279  Identities=11%  Similarity=0.165  Sum_probs=245.5

Q ss_pred             cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee---ec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE---CK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        37 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~---~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      +.+.|++++|+|++++|++++ ||.|++||+.+++....   +.  +|...|.+++|+|++  ++|++++.|+.|++||+
T Consensus        50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--CTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--SEEEEEESSSEEEEEEC
T ss_pred             CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--CEEEEEcCCCcEEEEEC
Confidence            388999999999999999999 99999999987654333   32  789999999999998  79999999999999999


Q ss_pred             cCCe--EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          112 RSFH--EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       112 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      .+++  ....+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+. .|...+.+++|+|++. .|++++.|
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d  204 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGT-KLWTGGLD  204 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCC-EEEEEecC
Confidence            9877  667788889999999999999999999999999999999999998888 8999999999999995 99999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      +.|++||++++.     ......+...+.+++|+ +++.++++++.++.|++||+.+++.. .+..            |.
T Consensus       205 g~i~~~d~~~~~-----~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~------------~~  265 (337)
T 1gxr_A          205 NTVRSWDLREGR-----QLQQHDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY-QLHL------------HE  265 (337)
T ss_dssp             SEEEEEETTTTE-----EEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEE-EECC------------CS
T ss_pred             CcEEEEECCCCc-----eEeeecCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeE-EEcC------------Cc
Confidence            999999999542     23334577889999999 78899999999999999999987654 3333            67


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE  349 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~  349 (389)
                      ..+.+++|+|+++  +|++++.||.|++|++.+++.      +. . ..|...|.++         +|+|++++|++++.
T Consensus       266 ~~v~~~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~------~~-~-~~~~~~v~~~---------~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          266 SCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGAS------IF-Q-SKESSSVLSC---------DISVDDKYIVTGSG  326 (337)
T ss_dssp             SCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCE------EE-E-EECSSCEEEE---------EECTTSCEEEEEET
T ss_pred             cceeEEEECCCCC--EEEEecCCCcEEEEECCCCeE------EE-E-ecCCCcEEEE---------EECCCCCEEEEecC
Confidence            8999999999999  889999999999999998775      32 2 2588899999         99999999999999


Q ss_pred             CCeEEEEec
Q 016457          350 DGRLCCWLS  358 (389)
Q Consensus       350 dg~v~iW~~  358 (389)
                      ||.|++|++
T Consensus       327 dg~i~iw~~  335 (337)
T 1gxr_A          327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-44  Score=311.60  Aligned_cols=247  Identities=16%  Similarity=0.119  Sum_probs=211.9

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee----ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE----CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      ...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    +.+|.+.|++++|+|++  ++|++|+.|++|++||+.+
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--TQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--CEEEEEeCCCeEEEEECCC
Confidence            5679999999986 788999999999999998876543    35899999999999999  7999999999999999999


Q ss_pred             CeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          114 FHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                      ++++..+.+|...|.+++|+|++.. +++++.|+.|++||+++++....+. ..+...+.+++|+|++.++|++|+.||.
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~  238 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT  238 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence            9999999999999999999998864 6677789999999999998887764 2455679999999977668999999999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCc
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDY  271 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
                      |++||++++    +.+..+..|...|.+++|+|....+|++++.|++|++||+.+++.+. +.+            |...
T Consensus       239 v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~------------H~~~  301 (344)
T 4gqb_B          239 VSLVDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA------------HRDF  301 (344)
T ss_dssp             EEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC------------CSSC
T ss_pred             EEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC------------CCCC
Confidence            999999954    56778889999999999995445789999999999999999887653 444            7899


Q ss_pred             eeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          272 FVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      |.+++|+|+++. +|++|+.||+|++|++.+...
T Consensus       302 V~~v~~sp~~~~-llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          302 VRDATWSPLNHS-LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEECSSSTT-EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEEeCCCCe-EEEEEcCCCeEEEEECCCCCC
Confidence            999999999875 467999999999999987543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-43  Score=313.11  Aligned_cols=300  Identities=13%  Similarity=0.114  Sum_probs=245.8

Q ss_pred             eeeeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeec--CCCCcEEEEEEeC-CCCCCEEEEEecCCeE
Q 016457           32 IQTNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECK--GHSSTVNQISFSG-PSTPHVLHSCSSDGTI  106 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~~~l~s~~~dg~i  106 (389)
                      ...+.+ ...|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| ++  .+|++++.|+.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d~~i  143 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT--NQLFVSSIRGAT  143 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE--EEEEEEETTTEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC--CEEEEEeCCCEE
Confidence            445556 8899999999999 999999999999999999887776665  6999999999999 55  799999999999


Q ss_pred             EEEEccCCeEEEEEEcC---CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          107 RAWDTRSFHEVWSVTAG---SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      ++||+.+ ..+..+..+   ...|.+++|+|++..+++++.|+.|++||+ +++.+..+. .|...|.+++|+|+++.+|
T Consensus       144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEE
T ss_pred             EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEE
Confidence            9999985 566666655   378999999999999999999999999999 577888887 8999999999999996589


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc--
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS--  261 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--  261 (389)
                      ++++.|+.|++||+++.......+. ...|...|.+++|+|.++.+|++++.|+.|++||+++++.+..+..+.....  
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIA-EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEE-EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEE-EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            9999999999999996432223333 3478999999999942889999999999999999999887776664321110  


Q ss_pred             -----CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecc--cceeeeeccCCCcccC
Q 016457          262 -----DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGG--HTAVVRSVLPMPSVQG  334 (389)
Q Consensus       262 -----~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~  334 (389)
                           ..|.  ....+..++|+|+++  +  +|+.||.|++||+.+++.      +..+. +  |...+..+        
T Consensus       300 ~~~~~~~~~--p~~~~~~~~~s~dg~--~--s~s~d~~i~iwd~~~~~~------~~~l~-~~~~~~~~~~~--------  358 (383)
T 3ei3_B          300 LTPIKATWH--PMYDLIVAGRYPDDQ--L--LLNDKRTIDIYDANSGGL------VHQLR-DPNAAGIISLN--------  358 (383)
T ss_dssp             SCCCCCEEC--SSSSEEEEECBCCTT--T--CTTCCCCEEEEETTTCCE------EEEEC-BTTBCSCCCEE--------
T ss_pred             ccceEEecc--CCCCceEEEecCCcc--c--ccCCCCeEEEEecCCCce------eeeec-CCCCCceEEEE--------
Confidence                 0111  123455577777776  4  888999999999998776      56665 4  45777777        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                       +|+|++++|++|+ ||.|++|+++.
T Consensus       359 -~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          359 -KFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             -EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             -EEecCccEEEEec-CCcEEEEecCC
Confidence             9999999999997 99999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.1e-43  Score=313.78  Aligned_cols=285  Identities=18%  Similarity=0.215  Sum_probs=249.3

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      .++.|+|++++ +||+|. |++|+|||..+|+....+.  +|...|++|+|+|++  ++|++|+.||+|++||+.+++.+
T Consensus       107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg--~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG--NYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEE
T ss_pred             cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC--CEEEEEECCCeEEEEEcCCCcEE
Confidence            46779999864 888876 9999999999998877654  678889999999999  79999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      ..+.+|...+.+++++  +..+++++.|+.+++||.+... .+..+. +|...+..+.++|++. .+++++.|+.+++||
T Consensus       183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP  258 (420)
T ss_dssp             EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCC-eeeeeeccccceEEe
Confidence            9999999999999985  5788888899999999998754 456666 8999999999999996 999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE--ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL--THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ..++......+.....|...|.+++|+|.+..+++++  +.|+.|++||+.++++...+..             ...+.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-------------~~~v~~  325 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-------------HSQVCS  325 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-------------SSCEEE
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-------------ccceee
Confidence            9977655566777788999999999997777777765  4689999999999999888774             367899


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      +.|+++++.+++++|+.||.|+|||+.+++.      +..+. +|...|+++         +|+|||++|+|||.||+|+
T Consensus       326 ~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~------v~~l~-gH~~~V~~l---------~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAK------VAELK-GHTSRVLSL---------TMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCE------EEEEC-CCSSCEEEE---------EECTTSSCEEEEETTTEEE
T ss_pred             eeecCCCCeEEEEEecCCCEEEEEECCCCcE------EEEEc-CCCCCEEEE---------EEcCCCCEEEEEecCCeEE
Confidence            9999999965445566899999999998776      67776 999999999         9999999999999999999


Q ss_pred             EEeccCC
Q 016457          355 CWLSDDS  361 (389)
Q Consensus       355 iW~~~~~  361 (389)
                      ||++.+.
T Consensus       390 iWdv~~~  396 (420)
T 4gga_A          390 LWRCFEL  396 (420)
T ss_dssp             EECCSCS
T ss_pred             EEECCCC
Confidence            9999765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-44  Score=318.15  Aligned_cols=316  Identities=11%  Similarity=0.083  Sum_probs=255.6

Q ss_pred             CccccCCCCeEEEEecCcee--eeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457           13 KSQSCDNVNSIKRFGLKNSI--QTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~   90 (389)
                      ..++++.|+.|++|++....  ..+.....+....|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|
T Consensus        70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP  149 (420)
T ss_dssp             TEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT
T ss_pred             eEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC
Confidence            45678889999999986432  2222344455567899999999999999999999999999888889999999999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee--cccC
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE--SHVE  168 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~  168 (389)
                      ++  ++|++|+.|+.|++||+.+++.+..+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+..  .+..
T Consensus       150 ~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  227 (420)
T 3vl1_A          150 SG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD  227 (420)
T ss_dssp             TS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC
T ss_pred             CC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC
Confidence            98  7999999999999999999999999999999999999999999999999999999999999988887762  2333


Q ss_pred             CeeE---------------------EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee-eccCCceeeEEEecCC
Q 016457          169 DVTQ---------------------VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGET  226 (389)
Q Consensus       169 ~v~~---------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  226 (389)
                      .+.+                     ++|+|++. +|++++.||.|++||++++.    ....+ ..|...|.+++|+ ++
T Consensus       228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~-~~  301 (420)
T 3vl1_A          228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE----QTIQLPSKFTCSCNSLTVD-GN  301 (420)
T ss_dssp             CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC----EEEEECCTTSSCEEEEEEC-SS
T ss_pred             CccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc----eeEEcccccCCCceeEEEe-CC
Confidence            4444                     45577885 99999999999999998542    23333 3577899999999 55


Q ss_pred             Cc-EEEEEecCCcEEEEEcCCCce-eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          227 NK-HLWCLTHIETLSIWDWKDGQN-VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       227 ~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +. +|++++.||.|++||+++++. +..+..+           |...+..+.+ ++++  +|++++.||.|++|++....
T Consensus       302 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~-~~~~--~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          302 NANYIYAGYENGMLAQWDLRSPECPVGEFLIN-----------EGTPINNVYF-AAGA--LFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             CTTEEEEEETTSEEEEEETTCTTSCSEEEEES-----------TTSCEEEEEE-ETTE--EEEEETTTEEEEEEEECCTT
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-----------CCCCceEEEe-CCCC--EEEEecCCccEEEEeccCCC
Confidence            55 999999999999999998754 6666652           4466777755 5666  88999999999999998743


Q ss_pred             ccc---cCCCeEEEecccceeeeeccCCCcccCCCCCCCce---eEEEecCCCeEEEEeccC
Q 016457          305 AAT---IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI---FGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       305 ~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~---~l~s~~~dg~v~iW~~~~  360 (389)
                      ...   .......+ .+|...|.++         +|+|+++   .|++++.+|.+.+|+++.
T Consensus       368 ~~~~~~~~~~~~~~-~~~~~~v~~~---------~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          368 SERPAIEFETPTFL-VSNDDAVSQF---------CYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCSCEECTTSCEEE-CCSSCCCCEE---------EEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCccceeccCccEE-ccCCcceEEE---------EEccCCCCcceEEEEcCCceEEEEeccC
Confidence            210   00111223 3777888888         9999999   677777799999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-43  Score=310.60  Aligned_cols=295  Identities=15%  Similarity=0.146  Sum_probs=249.3

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .++|++++|+|++++|++|+.|+.|++||+.+++  .+..+.+|...|.+++|+|++  ++|++++.||.|++||+.+++
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--NRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--TEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC--CEEEEEcCCCeEEEEECCCCe
Confidence            6889999999999999999999999999999887  888899999999999999998  799999999999999999887


Q ss_pred             EEEEE--EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          116 EVWSV--TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       116 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ....+  ..|...|.+++|+|++..+++++.|+.|++||++.+..   ...+..+|...|.+++|+|++. +|++++.|+
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg  164 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDF  164 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTS
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCC
Confidence            65554  55788999999999999999999999999999998763   3444337889999999999995 999999999


Q ss_pred             cEEEEecCCCC--------------CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457          191 LICTFDTGGDI--------------NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       191 ~i~i~d~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  256 (389)
                      .|++||++...              .....+..+..|...|.+++|+ +++.+|++++.|+.|++||+++++.+..+.. 
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  242 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLAS-  242 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceeEEEcc-
Confidence            99999975321              1234455566788999999999 7788999999999999999999999988886 


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc--CCccc--------------------------c
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY--GGAAT--------------------------I  308 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~~~~--------------------------~  308 (389)
                                 |...+.+++|+|++.  +|++| .|+.|++|++.+  ++...                          .
T Consensus       243 -----------~~~~v~~~~~~~~~~--~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          243 -----------ETLPLLAVTFITESS--LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             -----------SSCCEEEEEEEETTE--EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             -----------CCCCeEEEEEecCCC--EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence                       668999999999987  77777 899999999988  42100                          0


Q ss_pred             CCCe------EEEecccceeeeeccCCCcccCCCCC-CCc---eeEEEecCCCeEEEEeccC
Q 016457          309 GPPE------AVLVGGHTAVVRSVLPMPSVQGRPAQ-SHG---IFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       309 ~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~---~~l~s~~~dg~v~iW~~~~  360 (389)
                      +...      ..+..+|...|+++         +|. ++|   .+|+||+.||.|++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~---------~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQI---------SVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEE---------EEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccCccccccccccccCCccee---------EEecCCCcceeeEEEecCCCceEEEEecC
Confidence            0111      22334899999999         755 676   8999999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.2e-43  Score=300.08  Aligned_cols=273  Identities=14%  Similarity=0.183  Sum_probs=233.6

Q ss_pred             CccccCCCCeEEEEecCc-------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           13 KSQSCDNVNSIKRFGLKN-------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      ..++++.|++|++|++..       ++..+.+ ...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.
T Consensus        32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~  111 (319)
T 3frx_A           32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM  111 (319)
T ss_dssp             EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE
Confidence            578999999999999742       4566777 88999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC------CeEEEeecCCeEEEEECcCCce
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST------DYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      +++|+|++  .+|++|+.|++|++||++ ++.+..+.+|...|.+++|.|..      ..+++++.|+.|++||+++.+.
T Consensus       112 ~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  188 (319)
T 3frx_A          112 SVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI  188 (319)
T ss_dssp             EEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence            99999998  799999999999999996 56778889999999999999854      3788899999999999999988


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      ...+. +|...|.+++|+|++. +|++++.||.|++||++++    ..+..+ .+...|.+++|+ +++.+|++++. +.
T Consensus       189 ~~~~~-~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~----~~~~~~-~~~~~v~~~~~s-p~~~~la~~~~-~~  259 (319)
T 3frx_A          189 EADFI-GHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK----KAMYTL-SAQDEVFSLAFS-PNRYWLAAATA-TG  259 (319)
T ss_dssp             EEEEC-CCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT----EEEEEE-ECCSCEEEEEEC-SSSSEEEEEET-TE
T ss_pred             heeec-CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC----cEEEEe-cCCCcEEEEEEc-CCCCEEEEEcC-CC
Confidence            88888 8999999999999996 9999999999999999954    333333 345789999999 67888877765 45


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +++|++.....+..+......    ....|...+.+++|+|+|+  +|++|+.||.|++||+.++
T Consensus       260 i~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          260 IKVFSLDPQYLVDDLRPEFAG----YSKAAEPHAVSLAWSADGQ--TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTEEEEEEECCCCTT----CCGGGCCCEEEEEECTTSS--EEEEEETTSCEEEEEEEEC
T ss_pred             cEEEEeCcCeeeeccCccccc----cccCcCcceeEEEECCCCC--EEEEeecCceEEEEEEeec
Confidence            999999887776665432110    1112557789999999999  8999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8e-44  Score=319.76  Aligned_cols=296  Identities=13%  Similarity=0.055  Sum_probs=232.3

Q ss_pred             CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           38 DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        38 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      ...|+|++|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+|.+. .+|++|+.||+|++||++++
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~-~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT-NQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-TEEEEECSSSCEEEEETTSC
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-CEEEEEeCCCEEEEeeccCC
Confidence            67799999999 567999999999999999987654  345568999999999998432 79999999999999999876


Q ss_pred             eEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          115 HEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       115 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      ........+  ...+.+++|+|++..+++++.||.|++||++ ++.+..+. +|...|++++|+|+++.+|++++.|+.|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEEEecCccee
Confidence            544333333  4467899999999999999999999999986 45667777 8999999999999987789999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      ++||+++... ...+.....|...|.+++|+ +++.+|++++.|+.|++||+.+++....+..+.....      ....+
T Consensus       276 ~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~  347 (435)
T 4e54_B          276 KIWDLRQVRG-KASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF------QHLTP  347 (435)
T ss_dssp             CEEETTTCCS-SSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC------SSSCC
T ss_pred             eEEecccccc-cceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc------cccee
Confidence            9999986532 22333445788999999999 7889999999999999999999988777665321110      01122


Q ss_pred             eeecccCCCCeEEEEE------------ecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          273 VDCHYPGEGENLWVIG------------GTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~------------g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                      ..+.|+|++.  ++++            +..++.|++||..+++.      +..+..+|...|.++.        +|+|+
T Consensus       348 ~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~------~~~l~~~~~~~v~s~~--------~fspd  411 (435)
T 4e54_B          348 IKAAWHPRYN--LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM------MCQLYDPESSGISSLN--------EFNPM  411 (435)
T ss_dssp             CBCEECSSSS--CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE------EEEECCSSCCCCCCEE--------EECTT
T ss_pred             EEEEEcCCCC--EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE------EEEEeCCCCCcEEEEE--------EECCC
Confidence            3344555444  2333            33446899999998876      6777667888888872        69999


Q ss_pred             ceeEEEecCCCeEEEEeccCC
Q 016457          341 GIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |++|++|+ |+.|+||+++++
T Consensus       412 g~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          412 GDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             SSCEEEEC-SSEEEECCCC--
T ss_pred             CCEEEEEc-CCcEEEEECCcC
Confidence            99999987 889999998865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-43  Score=309.37  Aligned_cols=291  Identities=13%  Similarity=0.150  Sum_probs=243.1

Q ss_pred             CcceEEEeecCC----CCeEEEEecCCeEEEEeCCCceeeeeecC-----CCCcEEEEEEeCCCC--CCEEEEEecCCeE
Q 016457           38 DDYVFEIVPKND----WSLMAVSLSTNVVKLYSPVTGQYSGECKG-----HSSTVNQISFSGPST--PHVLHSCSSDGTI  106 (389)
Q Consensus        38 ~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~--~~~l~s~~~dg~i  106 (389)
                      .+.|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|++.  +.+|++|+.||.|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            889999999984    45666666788999999998877766653     557899999999942  1699999999999


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeee---eecccCCeeEEEEecCCCCe
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACL---EESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~  182 (389)
                      ++||+.+++.+..+..|...|.+++|+| ++..+++++.||.|++||+++++.+..+   . .|...|.+++|+|++. .
T Consensus        98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~  175 (366)
T 3k26_A           98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADYDLLGE-K  175 (366)
T ss_dssp             EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEECTTSS-E
T ss_pred             EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEECCCCC-E
Confidence            9999999999999999999999999999 7888999999999999999999988887   4 7999999999999995 9


Q ss_pred             EEEEeCCCcEEEEecCCCCCCC------------------------ccceeeeccCCceeeEEEecCCCcEEEEEecCCc
Q 016457          183 VVSASVDGLICTFDTGGDINDD------------------------DLLESVINVGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      |++++.||.|++||++++....                        ........|...|.+++|+   ++++++++.|+.
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~  252 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENA  252 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCE
Confidence            9999999999999998542100                        0011222388899999998   459999999999


Q ss_pred             EEEEEcCCCce--------------eEEeecccccccCCccCCCCCceeeecccCC--CCeEEEEEecCCceEEEEEecc
Q 016457          239 LSIWDWKDGQN--------------VASFENARSLASDSWTLDDVDYFVDCHYPGE--GENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       239 i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |++||+.++..              +..+..            |...+.+++|+|+  ++  +|++|+.||.|++||+.+
T Consensus       253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~~--~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDY------------SQCDIWYMRFSMDFWQK--MLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC------------SSCCSSCCCCEECTTSS--EEEEECTTSCEEEEECCS
T ss_pred             EEEEeCCCccccccccccCCcchheeccccc------------cCCcEEEEEEcCCCCCc--EEEEEecCCcEEEEECCC
Confidence            99999987654              445544            6688999999999  88  899999999999999998


Q ss_pred             CCccccCCCeEEEeccc--ceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          303 GGAATIGPPEAVLVGGH--TAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      ++...  .....+. +|  ...|.++         +|+|++++|++|+.||.|++|++.
T Consensus       319 ~~~~~--~~~~~~~-~~~~~~~v~~~---------~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          319 EDPHK--AKCTTLT-HHKCGAAIRQT---------SFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSGGG--CEEEEEC-CTTCCSCEEEE---------EECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCcc--ccceEEc-ccccCCceEEE---------EeCCCCCeEEEEeCCCEEEEEEec
Confidence            76411  1123454 66  6899999         999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=297.19  Aligned_cols=285  Identities=18%  Similarity=0.214  Sum_probs=244.9

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ..++|+||+++ +||+|. |++|+|||+++++.+..+.  +|...|++++|+|++  ++|++|+.||+|++||+++++.+
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~--~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG--NYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEE
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC--CEEEEEECCCcEEEeecCCceeE
Confidence            45789999986 788775 9999999999999887664  678889999999999  79999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      ..+.+|...+.++.+.  +..+++++.++.+++|+...... +..+. +|...+.++.+.+++. .+++++.|+.|++||
T Consensus       103 ~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP  178 (318)
T ss_dssp             EEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             EEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCC-EEEEEecCcceeEEE
Confidence            9999998888887764  67888888899999999987644 45555 8999999999999996 999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCceeeEEEecCCCcEEE--EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW--CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ++++............+...|..+++++.+...+.  +++.++.|++||...........             +...+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-------------~~~~v~~  245 (318)
T 4ggc_A          179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------------AHSQVCS  245 (318)
T ss_dssp             SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-------------CSSCEEE
T ss_pred             CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-------------ceeeeee
Confidence            99776555566667778889999999966666554  45678899999999887766654             4577899


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      +.|+++++.+++++|+.|+.|++||+.+++.      +..+. +|...|+++         +|+|+|++|+|||.||+|+
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------~~~l~-gH~~~V~~l---------~~spdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAK------VAELK-GHTSRVLSL---------TMSPDGATVASAAADETLR  309 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCE------EEEEC-CCSSCEEEE---------EECTTSSCEEEEETTTEEE
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcE------EEEEc-CCCCCEEEE---------EEcCCCCEEEEEecCCeEE
Confidence            9999999966556677899999999998876      67776 999999999         9999999999999999999


Q ss_pred             EEeccCC
Q 016457          355 CWLSDDS  361 (389)
Q Consensus       355 iW~~~~~  361 (389)
                      |||+.+.
T Consensus       310 iWd~~~~  316 (318)
T 4ggc_A          310 LWRCFEL  316 (318)
T ss_dssp             EECCSCC
T ss_pred             EEECCCC
Confidence            9998653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-43  Score=314.48  Aligned_cols=301  Identities=14%  Similarity=0.161  Sum_probs=251.3

Q ss_pred             CCCeEEEEecCceeeeeec---CcceEEEeecCCCC-eEEEEecCCeEEEEeC----CCce------eeeeecC------
Q 016457           19 NVNSIKRFGLKNSIQTNFG---DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSP----VTGQ------YSGECKG------   78 (389)
Q Consensus        19 ~~~~i~~w~~~~~~~~~~~---~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~----~~~~------~~~~~~~------   78 (389)
                      ....+.+|+.......+..   .+.|++++|+|+++ +||+|+.||.|++|++    .+++      ....+..      
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           23 TNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA  102 (425)
T ss_dssp             -----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred             cccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence            3445678887766665554   58999999999999 9999999999999999    8877      4444443      


Q ss_pred             ----CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457           79 ----HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        79 ----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  154 (389)
                          |...|.+++|+|++  ++|++++.||.|++|| .+++.+..+..|...|.+++|+|++..+++++.|+.|++||++
T Consensus       103 ~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          103 SSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             -----CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             cccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence                67899999999998  7999999999999999 6788889999999999999999999999999999999999999


Q ss_pred             CCceeeeeeecccCC---------------eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceee
Q 016457          155 NKKQVACLEESHVED---------------VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       155 ~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                      +++.+..+. .+...               +.+++|+|++  .+++++.++.|++||++++    ..+..+..|...|.+
T Consensus       180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~i~~  252 (425)
T 1r5m_A          180 SGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEK----TPTGKLIGHHGPISV  252 (425)
T ss_dssp             TTEEEEEEC-CC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCS----SCSEEECCCSSCEEE
T ss_pred             CCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCC----ceeeeeccCCCceEE
Confidence            999888887 56655               9999999985  7999999999999999954    456667788999999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ++|+ +++.+|++++.|+.|++||+.+++.+..+..            |...+.+++|+|++   ++++++.||.|++||
T Consensus       253 ~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~i~~~~~~~~~---~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          253 LEFN-DTNKLLLSASDDGTLRIWHGGNGNSQNCFYG------------HSQSIVSASWVGDD---KVISCSMDGSVRLWS  316 (425)
T ss_dssp             EEEE-TTTTEEEEEETTSCEEEECSSSBSCSEEECC------------CSSCEEEEEEETTT---EEEEEETTSEEEEEE
T ss_pred             EEEC-CCCCEEEEEcCCCEEEEEECCCCccceEecC------------CCccEEEEEECCCC---EEEEEeCCCcEEEEE
Confidence            9999 6788999999999999999999988888876            66899999999987   678999999999999


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.+++.      +..+. .|...|.++         +|+|++++|++++.||.|++|++...
T Consensus       317 ~~~~~~------~~~~~-~~~~~i~~~---------~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          317 LKQNTL------LALSI-VDGVPIFAG---------RISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             TTTTEE------EEEEE-CTTCCEEEE---------EECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             CCCCcE------eEecc-cCCccEEEE---------EEcCCCCEEEEEECCCeEEEEECCCC
Confidence            988765      55565 889999999         99999999999999999999999754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-42  Score=330.57  Aligned_cols=287  Identities=18%  Similarity=0.231  Sum_probs=241.7

Q ss_pred             eeec-CcceEEEeecCCC-CeEEEEecCCeEEEEeCCCc-----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeE
Q 016457           34 TNFG-DDYVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTG-----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      .+.+ .+.|++++|+|++ ++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++  ++|++|+.||+|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCCcE
Confidence            4556 8999999999875 79999999999999998753     3456788999999999999999  799999999999


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeEEEEecCCC-CeE
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQVHFVPNNQ-NKV  183 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~l  183 (389)
                      ++||+.+++.+..+.+|...|.+++|+|++..+++++.|+.|++||+..........  .+|...|.+++|+|++. ..+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            999999999999999999999999999999999999999999999986543332221  26888999999999862 379


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++++.|+.|++||+++.    .....+..|...|.+++|+ +++.+|++++.|+.|++||+.+++.+..+.         
T Consensus       535 ~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---------  600 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLE---------  600 (694)
T ss_dssp             EEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECCB---------
T ss_pred             EEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEec---------
Confidence            99999999999999854    4566777899999999999 788999999999999999999998877665         


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-------------------ceeee
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-------------------TAVVR  324 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-------------------~~~v~  324 (389)
                          +...+.+++|+|++.  +|++++ ++.|++||+.+++.      +..+. .+                   ...+.
T Consensus       601 ----~~~~v~~~~~sp~~~--~l~~~~-~~~i~iwd~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (694)
T 3dm0_A          601 ----ANSVIHALCFSPNRY--WLCAAT-EHGIKIWDLESKSI------VEDLK-VDLKAEAEKADNSGPAATKRKVIYCT  666 (694)
T ss_dssp             ----CSSCEEEEEECSSSS--EEEEEE-TTEEEEEETTTTEE------EEEEC-CCCC----------------CCCCEE
T ss_pred             ----CCCcEEEEEEcCCCc--EEEEEc-CCCEEEEECCCCCC------hhhhc-cccccccccccccccccCCceeEEee
Confidence                346799999999987  666664 56699999998765      23332 11                   11244


Q ss_pred             eccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          325 SVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      ++         +|+|+|++|+||+.||.|++|++.
T Consensus       667 ~l---------~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          667 SL---------NWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EE---------EECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eE---------EEcCCCCEEEEEcCCCeEEEEecc
Confidence            55         899999999999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-42  Score=302.84  Aligned_cols=266  Identities=18%  Similarity=0.251  Sum_probs=233.6

Q ss_pred             CCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc------eeeeeecCCCC
Q 016457           11 QPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG------QYSGECKGHSS   81 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~------~~~~~~~~~~~   81 (389)
                      ....++++.|++|++||..  +....+.. ...|.+++|+|++.+|++|+.|+.+++|++...      .....+.+|..
T Consensus        76 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~  155 (354)
T 2pbi_B           76 KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN  155 (354)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC
Confidence            3467899999999999975  34555555 788999999999999999999999999998643      34556778999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCcee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQV  159 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~  159 (389)
                      .|.+++|+|++  ..|++++.|++|++||+++++.+..+.+|...|.+++|+|.  +..+++++.||.|++||+++++.+
T Consensus       156 ~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~  233 (354)
T 2pbi_B          156 YLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV  233 (354)
T ss_dssp             CEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             cEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999999998  79999999999999999999999999999999999999874  578999999999999999999999


Q ss_pred             eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEecCC
Q 016457          160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                      ..+. .|...|++++|+|++. .|++++.|+.|++||+++.    ..+..+.  .+...+.+++|+ +++.+|++++.|+
T Consensus       234 ~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~----~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~g~~d~  306 (354)
T 2pbi_B          234 QAFE-THESDVNSVRYYPSGD-AFASGSDDATCRLYDLRAD----REVAIYSKESIIFGASSVDFS-LSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEEEEEC-TTSSEEEEEETTS
T ss_pred             EEec-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCC----cEEEEEcCCCcccceeEEEEe-CCCCEEEEEECCC
Confidence            9988 8999999999999995 9999999999999999854    2222222  223468899999 7889999999999


Q ss_pred             cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      .|++||+.+++.+..+.+            |...|.+++|+|+++  +|++|+.||.|++|+
T Consensus       307 ~i~vwd~~~~~~~~~l~~------------h~~~v~~l~~spdg~--~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          307 TINVWDVLKGSRVSILFG------------HENRVSTLRVSPDGT--AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEETTTCSEEEEECC------------CSSCEEEEEECTTSS--CEEEEETTSEEEEEC
T ss_pred             cEEEEECCCCceEEEEEC------------CCCcEEEEEECCCCC--EEEEEcCCCCEEecC
Confidence            999999999998888876            779999999999999  889999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.5e-43  Score=304.77  Aligned_cols=269  Identities=14%  Similarity=0.133  Sum_probs=219.6

Q ss_pred             CccccCC------CCeEEEEecCce------eeeee-cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee----e
Q 016457           13 KSQSCDN------VNSIKRFGLKNS------IQTNF-GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG----E   75 (389)
Q Consensus        13 ~~~s~~~------~~~i~~w~~~~~------~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~----~   75 (389)
                      ..++++.      |+.|++|+....      ..... +...|.+++|+|++. +++++.||+|+|||+.+++...    .
T Consensus        56 ~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~  134 (357)
T 4g56_B           56 LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFA  134 (357)
T ss_dssp             EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEE
T ss_pred             EEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeec
Confidence            3556665      678999986431      12222 377899999999985 5567789999999998876543    3


Q ss_pred             ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECc
Q 016457           76 CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        76 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~  154 (389)
                      ..+|...|++++|+|++  ++|++|+.|++|++||+++++.+..+..|...|++++|+|++. .+++++.|+.|++||++
T Consensus       135 ~~~h~~~V~~v~~spdg--~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDG--TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             ECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             cCCCCCCEEEEEECCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            34799999999999999  7999999999999999999999999999999999999998875 57778889999999999


Q ss_pred             CCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          155 NKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       155 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      +++++..+. ..+...+++++|+|++..+|++|+.|+.|++||++++    ..+..+..|...|.+++|+|+++.+|+++
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasg  288 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHSSPFLASI  288 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence            988776554 2466789999999987668999999999999999954    56677788999999999996666789999


Q ss_pred             ecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCCeEEEEEecCCceEEEEEeccC
Q 016457          234 THIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       234 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +.|++|+|||+++++.+..+ +            |...|.+++|+| ++.  +|++|+.||.|++|++.+.
T Consensus       289 s~D~~i~iwd~~~~~~~~~~-~------------H~~~V~~vafsP~d~~--~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          289 SEDCTVAVLDADFSEVFRDL-S------------HRDFVTGVAWSPLDHS--KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             ETTSCEEEECTTSCEEEEEC-C------------CSSCEEEEEECSSSTT--EEEEEETTSCEEEEECC--
T ss_pred             eCCCEEEEEECCCCcEeEEC-C------------CCCCEEEEEEeCCCCC--EEEEEcCCCeEEEEECCCC
Confidence            99999999999998877655 2            779999999998 677  7899999999999999754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.9e-43  Score=309.54  Aligned_cols=302  Identities=12%  Similarity=0.105  Sum_probs=251.0

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce------eeeeecCCCCcEEEEEEeCC----C---CCCEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ------YSGECKGHSSTVNQISFSGP----S---TPHVL   97 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~i~~~~~----~---~~~~l   97 (389)
                      ...+.+ .+.|++++|+|  ++|++|+.||.|++|++.+++      .+..+.+|...|.+++|+|+    +   .  +|
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EE
Confidence            344555 88999999999  799999999999999999887      78888899999999999998    4   4  89


Q ss_pred             EEEecCCeEEEEEccCCeE-----EEEEEcC-----CCCeEEEEEe----CCCCe-EEEeecCCeEEEEECcC------C
Q 016457           98 HSCSSDGTIRAWDTRSFHE-----VWSVTAG-----SQEIFCFSFG----GSTDY-LLAAGCGSQIQFWDWRN------K  156 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~  156 (389)
                      ++++.||.|++||+.+++.     +..+..|     ...|.+++|+    |++.. +++++.||.|++||+++      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999998886     8888888     4899999999    99999 99999999999999998      6


Q ss_pred             ceee-----eee------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec---c---CCceee
Q 016457          157 KQVA-----CLE------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN---V---GTSVGK  219 (389)
Q Consensus       157 ~~~~-----~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~---~~~i~~  219 (389)
                      +.+.     .+.      ..|...|.+++|+|++  .+++++.|+.|++||++++    ..+..+..   |   ...|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL----RPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT----EEEEEEECCC---CCCCCEEE
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC----ceeEEEeccccccccCCccce
Confidence            6665     663      1488899999999988  9999999999999999953    45666666   7   889999


Q ss_pred             EEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          220 VGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      ++|+ +++.+|++++.|   +.|++||+.+++.+..+......... .....|...|.+++|+|+++  +|++++.||.|
T Consensus       239 i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i  315 (397)
T 1sq9_A          239 VKFS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKL  315 (397)
T ss_dssp             EEEC-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             EEEC-CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC--EEEEEeCCCeE
Confidence            9999 678899999999   99999999999988888751100000 00001558899999999999  89999999999


Q ss_pred             EEEEeccCCccccCCCeEEEec-----cc---------------ceeeeeccCCCcccCCCCCCCc----------eeEE
Q 016457          296 GYFPVNYGGAATIGPPEAVLVG-----GH---------------TAVVRSVLPMPSVQGRPAQSHG----------IFGW  345 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~-----~h---------------~~~v~~~~~~~~~~~~~~s~~~----------~~l~  345 (389)
                      ++||+.+++.      +..+..     +|               ...|.++         +|+|++          ++|+
T Consensus       316 ~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~---------~~~~~g~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          316 RFWDVKTKER------ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV---------KFLKKGWRSGMGADLNESLC  380 (397)
T ss_dssp             EEEETTTTEE------EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE---------EEECTTTSBSTTCTTSCEEE
T ss_pred             EEEEcCCCce------eEEEecccCcccchhhhhccccccccccCCceeEE---------EeccccccccccccccceEE
Confidence            9999998765      455531     45               8889999         999998          7999


Q ss_pred             EecCCCeEEEEeccCC
Q 016457          346 TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       346 s~~~dg~v~iW~~~~~  361 (389)
                      +|+.||.|++|+++.+
T Consensus       381 s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          381 CVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEETTTEEEEEEEEC-
T ss_pred             EecCCCcEEEEEcCCC
Confidence            9999999999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-42  Score=293.80  Aligned_cols=284  Identities=16%  Similarity=0.210  Sum_probs=249.5

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      +....+.+ .+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++  .+|++++.||.|++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~   85 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK--ELLLFGGKDTMING   85 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT--TEEEEEETTSCEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC--CEEEEecCCCeEEE
Confidence            35566777 899999999 999999999999999999999999999999999999999999998  79999999999999


Q ss_pred             EEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEec-CCCCeEE
Q 016457          109 WDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVP-NNQNKVV  184 (389)
Q Consensus       109 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~  184 (389)
                      |++...   +.+..+..|...|.+++|  +++.+++++.|+.|++||  .++.+..+. .|...+.++.|.| ++ +.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~-~~l~  159 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSE-NKFL  159 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTT-TEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCC-CEEE
Confidence            998754   667888899999999999  477999999999999999  667777777 8999999999999 66 5999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      +++.|+.|++||..      .....+.. +...+.+++|+ +++. +++++.|+.|++||+++++.+..+..        
T Consensus       160 ~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--------  223 (313)
T 3odt_A          160 TASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMHTGDVLRTYEG--------  223 (313)
T ss_dssp             EEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred             EEECCCCEEEEecC------ceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECCchhhhhhhhc--------
Confidence            99999999999955      34455555 88899999999 5666 99999999999999999999998886        


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                          |...+.+++|+|++.   |++++.||.|++||+.+++.      +..+. .|...|.++         +|+|+++ 
T Consensus       224 ----~~~~i~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~------~~~~~-~~~~~i~~~---------~~~~~~~-  279 (313)
T 3odt_A          224 ----HESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSL------KQVIT-LPAISIWSV---------DCMSNGD-  279 (313)
T ss_dssp             ----CSSCEEEEEECTTSC---EEEEETTSEEEEECTTTCCE------EEEEE-CSSSCEEEE---------EECTTSC-
T ss_pred             ----CCceEEEEEEecCCC---EEEEecCCEEEEEECCCCce------eEEEe-ccCceEEEE---------EEccCCC-
Confidence                669999999999983   57889999999999998876      56665 888999999         9999998 


Q ss_pred             EEEecCCCeEEEEeccCCc
Q 016457          344 GWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       344 l~s~~~dg~v~iW~~~~~~  362 (389)
                      +++++.||.|++|+++...
T Consensus       280 ~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          280 IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEEEETTSCEEEEESCGGG
T ss_pred             EEEEeCCCcEEEEeCCCCc
Confidence            5678889999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-42  Score=298.42  Aligned_cols=282  Identities=13%  Similarity=0.180  Sum_probs=228.4

Q ss_pred             CCCccccCCCCeEEEEecCce----eeee-ec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCc
Q 016457           11 QPKSQSCDNVNSIKRFGLKNS----IQTN-FG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSST   82 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~~~----~~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~   82 (389)
                      ....++++.|++|++|++...    ...+ .+ ...|.+++|+|++++|++|+.|++|++|++.++  +.+..+.+|...
T Consensus        28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~  107 (345)
T 3fm0_A           28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE  107 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred             CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence            346889999999999998642    1222 34 789999999999999999999999999998766  457788999999


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCC---eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF---HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--  157 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--  157 (389)
                      |.+++|+|++  ++|++|+.|++|++||+.++   ..+..+..|...|.+++|+|++..+++++.|+.|++||+++++  
T Consensus       108 v~~v~~sp~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          108 VKSVAWAPSG--NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV  185 (345)
T ss_dssp             EEEEEECTTS--SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred             ceEEEEeCCC--CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence            9999999999  79999999999999999865   4566788899999999999999999999999999999998775  


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC-----------ccceeeec-cCCceeeEEEecC
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD-----------DLLESVIN-VGTSVGKVGFFGE  225 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----------~~~~~~~~-~~~~i~~~~~~~~  225 (389)
                      ....+. +|...|++++|+|++. +|++++.|+.|++||........           ..+..+.. |...|.+++|+ +
T Consensus       186 ~~~~~~-~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~  262 (345)
T 3fm0_A          186 CCATLE-GHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-Q  262 (345)
T ss_dssp             EEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-T
T ss_pred             EEEEec-CCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe-c
Confidence            346676 8999999999999995 99999999999999975322111           11222222 77889999999 6


Q ss_pred             CCcEEEEEecCCcEEEEEcCCCce----eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          226 TNKHLWCLTHIETLSIWDWKDGQN----VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       226 ~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++..|++++.|+.|++|+......    ...+..+.       ...|...|.+++|+|++.. +|++|+.||.|++|++.
T Consensus       263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-------~~~h~~~V~~v~~~p~~~~-~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL-------HQAHSQDVNCVAWNPKEPG-LLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE-------TTSSSSCEEEEEECSSSTT-EEEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee-------cccccCcEeEeEEeCCCce-EEEEcCCCCcEEEEEec
Confidence            778899999999999999875421    11111100       0127899999999998743 68999999999999998


Q ss_pred             cCCc
Q 016457          302 YGGA  305 (389)
Q Consensus       302 ~~~~  305 (389)
                      +++.
T Consensus       335 ~~~~  338 (345)
T 3fm0_A          335 RPEG  338 (345)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            8664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-41  Score=292.09  Aligned_cols=269  Identities=17%  Similarity=0.228  Sum_probs=238.1

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...++++.|+.|++|+..  +....+.+ ...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  115 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF  115 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            357889999999999985  45566666 889999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      +|++  ++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+...+..
T Consensus       116 ~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  193 (312)
T 4ery_A          116 NPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP  193 (312)
T ss_dssp             CSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC
T ss_pred             cCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC
Confidence            9998  79999999999999999999999999999999999999999999999999999999999999888777646777


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCce--eeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV--GKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .+.+++|+|+++ +|++++.|+.|++||++++    ..+..+..|....  ....++++++.+|++++.|+.|++||+.+
T Consensus       194 ~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          194 PVSFVKFSPNGK-YILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTEEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             ceEEEEECCCCC-EEEEEcCCCeEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            899999999996 9999999999999999854    3455555555443  33456657788999999999999999999


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec--CCceEEEEEec
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVN  301 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~  301 (389)
                      ++.+..+.+            |...|.+++|+|+++  ++++++  .|+.|++|+.+
T Consensus       269 ~~~~~~~~~------------h~~~v~~~~~~p~~~--~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          269 KEIVQKLQG------------HTDVVISTACHPTEN--IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECC------------CSSCEEEEEECSSSS--EEEEEECTTTCCEEEEECC
T ss_pred             chhhhhhhc------------cCCcEEEEeecCcCC--ceEEEEccCCccEEEecCC
Confidence            999988887            779999999999998  777775  69999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.5e-41  Score=303.07  Aligned_cols=302  Identities=20%  Similarity=0.302  Sum_probs=267.0

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ..++++.|+.|++|++.  +.+..+.+ .+.|.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus       131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  208 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH  208 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec
Confidence            46788999999999985  56677777 8899999998  5699999999999999999999999999999999999996


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                        +  +.+++|+.||+|++||+.+++.+..+..|...|.++++  ++..+++++.||.|++||+++++.+..+. +|...
T Consensus       209 --~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~  281 (445)
T 2ovr_B          209 --E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNR  281 (445)
T ss_dssp             --T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSC
T ss_pred             --C--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCc
Confidence              3  48999999999999999999999999999999999999  67889999999999999999999999998 89999


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      |.++.|  ++ ..+++++.|+.|++||++++    ..+..+..|...+.++.+.   +.++++++.||.|++||+.+++.
T Consensus       282 v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~  351 (445)
T 2ovr_B          282 VYSLQF--DG-IHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQC  351 (445)
T ss_dssp             EEEEEE--CS-SEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCE
T ss_pred             eEEEEE--CC-CEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcE
Confidence            999999  55 49999999999999999954    4566777888888888875   45899999999999999999999


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe----cccceeeee
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV----GGHTAVVRS  325 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~----~~h~~~v~~  325 (389)
                      +..+....         .|...|.+++|++  +  +|++|+.||.|++||+.+++.      +..+.    .+|...|.+
T Consensus       352 ~~~~~~~~---------~~~~~v~~~~~~~--~--~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          352 LQTLQGPN---------KHQSAVTCLQFNK--N--FVITSSDDGTVKLWDLKTGEF------IRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             EEEECSTT---------SCSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCE------EEEEEECTTGGGTCEEEE
T ss_pred             EEEEccCC---------CCCCCEEEEEECC--C--EEEEEeCCCeEEEEECCCCce------eeeeeccccCCCCceEEE
Confidence            88887532         2668899999964  5  889999999999999998876      55552    367889999


Q ss_pred             ccCCCcccCCCCCCCceeEEEecCCCe----EEEEeccCC
Q 016457          326 VLPMPSVQGRPAQSHGIFGWTGGEDGR----LCCWLSDDS  361 (389)
Q Consensus       326 ~~~~~~~~~~~~s~~~~~l~s~~~dg~----v~iW~~~~~  361 (389)
                      +         +|+|++.+|++|+.||+    |.+||++..
T Consensus       413 ~---------~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          413 I---------RASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             E---------EECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             E---------EecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            9         99999999999999998    999999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.9e-42  Score=297.15  Aligned_cols=279  Identities=14%  Similarity=0.250  Sum_probs=225.9

Q ss_pred             CCCCccccCCCCeEEEEecCc---------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC
Q 016457           10 SQPKSQSCDNVNSIKRFGLKN---------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH   79 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~~---------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~   79 (389)
                      +.+..++++.|++|++|++..         +...+.+ ...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            445688999999999999852         3455666 889999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE---cCCCCeEEEEEeCCC----------CeEEEeecCC
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT---AGSQEIFCFSFGGST----------DYLLAAGCGS  146 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~d~  146 (389)
                      ...|.+++|+|++  .+|++++.|++|++||+.. .......   .|...|.+++|+|.+          ..+++++.|+
T Consensus       118 ~~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  194 (343)
T 2xzm_R          118 QSEVYSVAFSPDN--RQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG  194 (343)
T ss_dssp             CSCEEEEEECSST--TEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred             CCcEEEEEECCCC--CEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence            9999999999999  7999999999999999974 3333333   578899999999876          6788899999


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      .|++|| ...+....+. +|...|.+++|+|++. +|++|+.|+.|++||++...    .......+...|.+++|+ ++
T Consensus       195 ~i~iwd-~~~~~~~~~~-~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s-p~  266 (343)
T 2xzm_R          195 RLKVWN-TNFQIRYTFK-AHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLT----YPQREFDAGSTINQIAFN-PK  266 (343)
T ss_dssp             EEEEEE-TTTEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCS----SCSEEEECSSCEEEEEEC-SS
T ss_pred             EEEEEc-CCCceeEEEc-CccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCc----ccceeecCCCcEEEEEEC-CC
Confidence            999999 4456667777 8999999999999996 99999999999999996321    122233456679999999 66


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeE--EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVA--SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +.+++ ++.|+.|++||+.+++...  .+.... .....-..+|...+.+++|+|+|+  +|++|+.||.|++|++.++
T Consensus       267 ~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g~--~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          267 LQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEP-ITKAEGQKGKNPQCTSLAWNALGK--KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SCEEE-EEESSCEEEEESSSCCSCSEEECCCCS-GGGBTTBCCSCCCEEEEEECSSSC--CEEEEETTSEEEEEEEEEE
T ss_pred             CCEEE-EECCCCEEEEEeCCCCCCceEEeecCc-chhhhhhcCCCCceEEEEECCCCC--eEEEecCCceEEEEEEEcc
Confidence            76665 5568889999998776543  333110 000000113778899999999999  8899999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-43  Score=319.93  Aligned_cols=311  Identities=9%  Similarity=0.041  Sum_probs=230.9

Q ss_pred             CccccCCCCeEEEEecCc--e----eeeeec-CcceEEEeecCC------CCeEEEEecCCeEEEEeCCCcee-------
Q 016457           13 KSQSCDNVNSIKRFGLKN--S----IQTNFG-DDYVFEIVPKND------WSLMAVSLSTNVVKLYSPVTGQY-------   72 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~----~~~~~~-~~~v~~~~~~~~------~~~l~~~~~d~~i~iw~~~~~~~-------   72 (389)
                      ..++++.|++|++|++..  .    ..++.+ .+.|.+++|+|+      +.+||+|+.||+|+|||+.+++.       
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            458899999999999852  2    133445 688999999997      57999999999999999986642       


Q ss_pred             ----eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEcCCCCeEEE--EEeCCC-CeEEEeec
Q 016457           73 ----SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTAGSQEIFCF--SFGGST-DYLLAAGC  144 (389)
Q Consensus        73 ----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~  144 (389)
                          ...+.+|...|++++|++++   .|++|+.||+|++||++++. +...+..|...|.++  +|+|++ ..|++++.
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                23677899999999999754   89999999999999999763 456788999999999  567666 67888889


Q ss_pred             CCeEEEEECcCCceeeeeeecccC--CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEE
Q 016457          145 GSQIQFWDWRNKKQVACLEESHVE--DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF  222 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (389)
                      |++|++||+++++.+..+. +|..  .|.+++|+|++. .+++++.|+.|++||++++    ..+..+.+|...|.+++|
T Consensus       332 D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEEC
T ss_pred             CCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEe
Confidence            9999999999988877776 5653  588999999986 8999999999999999954    345667789999999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      + +++.+|++|+.|++|++||+... .+..+....     .|  .+...+.+++|+|+++  .+ ....+..+..|+. +
T Consensus       406 S-p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~-----~~--~~~~~v~~v~~sp~g~--~~-~~~~~~~~~~~~~-~  472 (524)
T 2j04_B          406 S-RLHPMVLAGSADGSLIITNAARR-LLHGIKNSS-----AT--QKSLRLWKWDYSIKDD--KY-RIDSSYEVYPLTV-N  472 (524)
T ss_dssp             C-SSCCBCEEEETTTEEECCBSCSS-TTTCC-------------CCCCEEEECBCCSSSC--EE-EECCCCCCCC-----
T ss_pred             C-CCCCeEEEEECCCEEEEEechHh-hccccccCc-----cc--eeeeEEEEeccCCCCC--eE-EccCCceeccccc-C
Confidence            9 78889999999999999998643 221111000     00  0223578999999998  33 2222222322332 2


Q ss_pred             CCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce---eEEEecCCCeEEEEeccCC
Q 016457          303 GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI---FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~---~l~s~~~dg~v~iW~~~~~  361 (389)
                      +..      +..+. +|...|.+|         +|+|++.   +||+|+.||.||||+++..
T Consensus       473 g~~------~~~l~-gh~~~V~~V---------afsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          473 DVS------KAKID-AHGINITCT---------KWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ----------------CCCSCCCE---------EECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             Ccc------eeeec-CCCceEEEE---------ECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            222      45665 899999999         9999964   9999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.4e-43  Score=304.81  Aligned_cols=297  Identities=15%  Similarity=0.138  Sum_probs=240.4

Q ss_pred             CcceEEEeecCCCCeE-EEEec---CCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCC---CCCCEEEEEecCCeEEEE
Q 016457           38 DDYVFEIVPKNDWSLM-AVSLS---TNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGP---STPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l-~~~~~---d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~---~~~~~l~s~~~dg~i~iw  109 (389)
                      .+.|++++|+|++..+ ++|+.   |+.|++||+.+++..... .+|...|.+++|+|+   +  .+|++|+.||.|++|
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~iw   95 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ--RYLATGDFGGNLHIW   95 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT--CCEEEEETTSCEEEE
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC--ceEEEecCCCeEEEE
Confidence            8899999999999654 56655   899999999988765443 369999999999998   5  699999999999999


Q ss_pred             EccCCe-EEEEEEcCCCCeEEEEE------eCCCCeEEEeecCCeEEEEECcCCc-eeeeeeecccC----CeeEEE---
Q 016457          110 DTRSFH-EVWSVTAGSQEIFCFSF------GGSTDYLLAAGCGSQIQFWDWRNKK-QVACLEESHVE----DVTQVH---  174 (389)
Q Consensus       110 d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~----~v~~~~---  174 (389)
                      |+.+++ .+..+..|...|.+++|      +|++..+++++.|+.|++||+++++ .+..+. .|..    .+.+++   
T Consensus        96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  174 (357)
T 3i2n_A           96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGN  174 (357)
T ss_dssp             CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEEC
T ss_pred             eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEe
Confidence            999888 88899999999999955      6788899999999999999999887 666665 4443    789998   


Q ss_pred             -EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC--CCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          175 -FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE--TNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       175 -~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                       |+|++. ++++++.|+.|++||++++.     ......+...|.+++|+|.  ++.+|++++.|+.|++||+++++...
T Consensus       175 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          175 AYNQEER-VVCAGYDNGDIKLFDLRNMA-----LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             CCC-CCC-EEEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             ccCCCCC-EEEEEccCCeEEEEECccCc-----eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence             678885 99999999999999999642     3445678899999999942  78899999999999999998776554


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc-------------CCCeEEEecc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI-------------GPPEAVLVGG  318 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~-------------~~~~~~~~~~  318 (389)
                      .+.....       ..|...|.+++|+|+++. +|++|+.||.|++||+..+.....             ..++..+. +
T Consensus       249 ~~~~~~~-------~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~  319 (357)
T 3i2n_A          249 GFASVSE-------KAHKSTVWQVRHLPQNRE-LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-L  319 (357)
T ss_dssp             EEEEEEE-------ECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-C
T ss_pred             ceeeecc-------CCCcCCEEEEEECCCCCc-EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-c
Confidence            4431000       017799999999998764 578999999999999987653110             01345555 8


Q ss_pred             cceeeeeccCCCcccCCCCCCCceeEE-EecCCCeEEEEeccCC
Q 016457          319 HTAVVRSVLPMPSVQGRPAQSHGIFGW-TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       319 h~~~v~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~v~iW~~~~~  361 (389)
                      |...|.++         +|+|++++|+ +++.||.|++|++...
T Consensus       320 ~~~~v~~~---------~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          320 STQPISSL---------DWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CSSCEEEE---------EECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCCCeeEE---------EEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            89999999         9999999998 8999999999999753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-44  Score=316.12  Aligned_cols=244  Identities=13%  Similarity=0.128  Sum_probs=202.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc--eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG--QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .+.|++++|+|++++|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++  ++|++++.|++|++||+.+++
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--NRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--CCEEEEETTSSEEEC------
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCC
Confidence            678999999999999999999999999999988  7888999999999999999998  799999999999999999877


Q ss_pred             ---EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc---eeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          116 ---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK---QVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       116 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                         ....+..|...|.+++|+|++..+++++.|+.|++||+++++   ....+...|...|++++|+|++. +|++++.|
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d  167 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCAD  167 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESS
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCC
Confidence               677778899999999999999999999999999999999887   36667623999999999999995 99999999


Q ss_pred             CcEEEEecCCCCC--------------CCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce----eE
Q 016457          190 GLICTFDTGGDIN--------------DDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN----VA  251 (389)
Q Consensus       190 ~~i~i~d~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~  251 (389)
                      +.|++||++....              ....+..+ .|...|.+++|+ +++++|++++.|+.|++||+.+++.    +.
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence            9999999964321              11223333 788999999999 7888999999999999999999877    55


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      .+..            |...+.+++|+|+++  +|++|+.++.+ +|+..
T Consensus       246 ~~~~------------~~~~v~~~~~s~~~~--~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          246 TVKL------------SQLPLRSLLWANESA--IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEC------------SSSCEEEEEEEETTE--EEEEESSSSEE-EECCC
T ss_pred             eecC------------CCCceEEEEEcCCCC--EEEEEcCCcEE-EEEeC
Confidence            5555            678999999999998  88888777655 66654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-41  Score=302.32  Aligned_cols=282  Identities=15%  Similarity=0.197  Sum_probs=242.2

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      .+.+++|++  ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++  .+|++|+.||.|++||+.+++.+.
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~  170 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG--SFLSVGLGNGLVDIYDVESQTKLR  170 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC--CEEEEECCCCeEEEEECcCCeEEE
Confidence            355577765  4577788899999999999988877765 88999999999998  799999999999999999999999


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      .+..|...|.+++|+  +..+++++.||.|++||++ ....+..+. +|...|.+++|+|++. +|++++.|+.|++||+
T Consensus       171 ~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~  246 (401)
T 4aez_A          171 TMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDA  246 (401)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred             EecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccC
Confidence            999999999999995  5789999999999999999 456677776 8999999999999985 9999999999999999


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe--cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT--HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      +++    .....+..|...|.+++|+|.+..++++++  .|+.|++||+.+++.+..+.             +...+.++
T Consensus       247 ~~~----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------------~~~~v~~~  309 (401)
T 4aez_A          247 RSS----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------------AGSQVTSL  309 (401)
T ss_dssp             TCS----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-------------CSSCEEEE
T ss_pred             CCC----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-------------CCCcEEEE
Confidence            953    455667788999999999965667777766  79999999999999888876             44789999


Q ss_pred             cccCCCCeEEEEE--ecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          276 HYPGEGENLWVIG--GTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       276 ~~~~~~~~~~l~~--g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      +|+|+++  ++++  |+.||.|++|++.+++.    .....+. +|...|.++         +|+|++++|++++.||.|
T Consensus       310 ~~s~~~~--~l~~~~g~~dg~i~v~~~~~~~~----~~~~~~~-~h~~~v~~~---------~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          310 IWSPHSK--EIMSTHGFPDNNLSIWSYSSSGL----TKQVDIP-AHDTRVLYS---------ALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EECSSSS--EEEEEECTTTCEEEEEEEETTEE----EEEEEEE-CCSSCCCEE---------EECTTSSEEEEECTTSEE
T ss_pred             EECCCCC--eEEEEeecCCCcEEEEecCCccc----eeEEEec-CCCCCEEEE---------EECCCCCEEEEEeCCCcE
Confidence            9999999  5566  66999999999998654    1123344 899999999         999999999999999999


Q ss_pred             EEEeccCCc
Q 016457          354 CCWLSDDSS  362 (389)
Q Consensus       354 ~iW~~~~~~  362 (389)
                      ++|++....
T Consensus       374 ~iw~~~~~~  382 (401)
T 4aez_A          374 KFWRVYDGD  382 (401)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCc
Confidence            999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-42  Score=305.99  Aligned_cols=276  Identities=14%  Similarity=0.186  Sum_probs=233.7

Q ss_pred             CCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-------eeeeecCCC
Q 016457           11 QPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-------YSGECKGHS   80 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~   80 (389)
                      ....++++.|++|++||..  +....+.. ...|.+++|+|++++|++|+.|+.|++|++.+..       ....+.+|.
T Consensus        78 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~  157 (380)
T 3iz6_a           78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK  157 (380)
T ss_dssp             SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence            3468899999999999985  45666666 7889999999999999999999999999986532       345678999


Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE-----EcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECc
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV-----TAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~  154 (389)
                      +.|.++.|.|++. ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++..+++++.|+.|++||++
T Consensus       158 ~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~  236 (380)
T 3iz6_a          158 GYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR  236 (380)
T ss_dssp             SCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred             cceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence            9999999999763 57999999999999999999998888     56888999999987 56778888889999999998


Q ss_pred             -CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-------cCCceeeEEEecCC
Q 016457          155 -NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-------VGTSVGKVGFFGET  226 (389)
Q Consensus       155 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~  226 (389)
                       ..+.+..+. +|...|++++|+|++. +|++|+.|+.|++||++++.    .+..+..       +...|.+++|+ ++
T Consensus       237 ~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s-~~  309 (380)
T 3iz6_a          237 ITSRAVRTYH-GHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH----QLQVYNREPDRNDNELPIVTSVAFS-IS  309 (380)
T ss_dssp             TTCCCCEEEC-CCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE----EEEEECCCCSSSCCSSCSCSEEEEC-SS
T ss_pred             CCCcceEEEC-CcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc----EEEEecccccccccccCceEEEEEC-CC
Confidence             456777777 8999999999999995 99999999999999999652    2222222       22358899999 78


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +.+|++++.||.|++||+..++.+..+....        .+|...|.+++|+|+|+  +|++|+.||.|++|++...+
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--------~~h~~~v~~l~~s~dg~--~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ--------NSHEGRISCLGLSSDGS--ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSC--------SSCCCCCCEEEECSSSS--EEEEECTTSCEEEEECCSSS
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEeccc--------CCCCCceEEEEECCCCC--EEEEeeCCCCEEEEecCCCc
Confidence            8999999999999999999988887764211        12789999999999999  89999999999999998654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-43  Score=313.20  Aligned_cols=287  Identities=10%  Similarity=0.140  Sum_probs=245.3

Q ss_pred             CcceEEEeecCCCC-eEEEE----------ecCCeEEEEeCCCce---eeeeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           38 DDYVFEIVPKNDWS-LMAVS----------LSTNVVKLYSPVTGQ---YSGECKGHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~-~l~~~----------~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ...|.+++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+ .|...|.+++|+|++  .+|++++.|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~d   88 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN--KIIAGALDN   88 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS--SCEEEEESS
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC--CeEEEEccC
Confidence            35688999999987 99999          889999999999875   34444 488999999999999  799999999


Q ss_pred             CeEEEEEccC----CeEEEEEEcCCCCeEEEEEeCC-CCeEEEeecCCeEEEEECcCCc------eeeee---eecccCC
Q 016457          104 GTIRAWDTRS----FHEVWSVTAGSQEIFCFSFGGS-TDYLLAAGCGSQIQFWDWRNKK------QVACL---EESHVED  169 (389)
Q Consensus       104 g~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~~---~~~~~~~  169 (389)
                      |.|++||+.+    .+.+..+..|...|.+++|+|+ +..+++++.|+.|++||+++++      ....+   . .|...
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~  167 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDE  167 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCC
Confidence            9999999987    4588888999999999999998 7888888899999999999876      33332   3 68899


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCcEEEEEecCC---cEE
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNKHLWCLTHIE---TLS  240 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~d~---~i~  240 (389)
                      |.+++|+|++..+|++++.|+.|++||++++    ..+..+..+      ...+.+++|+|.+..++++++.|+   .|+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL  243 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence            9999999995469999999999999999954    334444444      788999999955457999999998   999


Q ss_pred             EEEcCCC-ceeEEee-cccccccCCccCCCCCceeeecccC-CCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec
Q 016457          241 IWDWKDG-QNVASFE-NARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG  317 (389)
Q Consensus       241 i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~  317 (389)
                      +||++++ ..+..+. .            |...+.+++|+| +++  +|++++.||.|++||+.+++.      +..+. 
T Consensus       244 ~~d~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~--~l~s~~~dg~v~~wd~~~~~~------~~~~~-  302 (416)
T 2pm9_A          244 IWDLRNANTPLQTLNQG------------HQKGILSLDWCHQDEH--LLLSSGRDNTVLLWNPESAEQ------LSQFP-  302 (416)
T ss_dssp             EEETTSTTSCSBCCCSC------------CSSCEEEEEECSSCSS--CEEEEESSSEEEEECSSSCCE------EEEEE-
T ss_pred             EEeCCCCCCCcEEeecC------------ccCceeEEEeCCCCCC--eEEEEeCCCCEEEeeCCCCcc------ceeec-
Confidence            9999986 4555554 4            678999999999 777  889999999999999998776      66675 


Q ss_pred             ccceeeeeccCCCcccCCCCCCCc-eeEEEecCCCeEEEEeccCCc
Q 016457          318 GHTAVVRSVLPMPSVQGRPAQSHG-IFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       318 ~h~~~v~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~v~iW~~~~~~  362 (389)
                      +|...|.++         +|+|++ .+|++++.||.|++|++....
T Consensus       303 ~~~~~v~~~---------~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          303 ARGNWCFKT---------KFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSSCCCCE---------EECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCCCceEEE---------EECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            899999999         999999 899999999999999998763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=294.45  Aligned_cols=270  Identities=17%  Similarity=0.181  Sum_probs=215.9

Q ss_pred             CccccCCCCeEEEEecCc----eeeee-e--cCcceEEEeecCCCCeEEEEecCCeEEEEeCCC-------ceeeeeecC
Q 016457           13 KSQSCDNVNSIKRFGLKN----SIQTN-F--GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-------GQYSGECKG   78 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~----~~~~~-~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-------~~~~~~~~~   78 (389)
                      ..++++.|++|++|++..    ....+ .  +...|.+++|+|++++|++|+.|++|+|||+..       .+.+..+.+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            678999999999999863    33344 2  267899999999999999999999999999853       356677889


Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC----CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR  154 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  154 (389)
                      |...|.+++|+|++  ++|++|+.|++|++||++.    .+++..+..|...|.+++|+|++..|++++.|+.|++||.+
T Consensus       106 h~~~V~~v~~sp~g--~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          106 HENEVKGVAWSNDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             ---CEEEEEECTTS--CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEECCCC--CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999998  7999999999999999943    35678889999999999999999999999999999999998


Q ss_pred             CC--ceeeeeeecccCCeeEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCC----ccceeeec-cCCceeeEEEecC
Q 016457          155 NK--KQVACLEESHVEDVTQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDD----DLLESVIN-VGTSVGKVGFFGE  225 (389)
Q Consensus       155 ~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~-~~~~i~~~~~~~~  225 (389)
                      ++  +++..+. +|...|.+++|+|+  + ..|++++.|+.|++||++++....    .....+.. |...|.+++|+ +
T Consensus       184 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~  260 (330)
T 2hes_X          184 DDDWECVAVLN-GHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-F  260 (330)
T ss_dssp             TTEEEEEEEEC-CCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-T
T ss_pred             CCCeeEEEEcc-CCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-C
Confidence            76  5677787 89999999999998  5 389999999999999997432111    11222333 78899999998 4


Q ss_pred             CCcEEEEEecCCcEEEEEcCCCc--eeEEe-ecccccccCCccCCCCC-ceeeecccC--CCCeEEEEEecCCceEEEEE
Q 016457          226 TNKHLWCLTHIETLSIWDWKDGQ--NVASF-ENARSLASDSWTLDDVD-YFVDCHYPG--EGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       226 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~-~~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ++ +|++++.|+.|++||..+++  ..... ..            |.. .|.+++|+|  +++  +|++|+.||.|++|+
T Consensus       261 ~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------------h~~~~v~~v~~~~~~~~~--~las~s~Dg~v~~W~  325 (330)
T 2hes_X          261 NG-LIASVGADGVLAVYEEVDGEWKVFAKRALC------------HGVYEINVVKWLELNGKT--ILATGGDDGIVNFWS  325 (330)
T ss_dssp             TS-CEEEEETTSCEEEEEEETTEEEEEEEESCT------------TTTSCEEEEEEC-----C--CEEEEETTSEEEEEE
T ss_pred             CC-EEEEEeCCCEEEEEEcCCCceEEEeccccc------------cccceEEEEEEecCCCce--EEEEecCCCcEEEEE
Confidence            44 79999999999999998764  22222 22            555 899999999  566  789999999999999


Q ss_pred             ecc
Q 016457          300 VNY  302 (389)
Q Consensus       300 ~~~  302 (389)
                      +..
T Consensus       326 ~~~  328 (330)
T 2hes_X          326 LEK  328 (330)
T ss_dssp             C--
T ss_pred             ecc
Confidence            864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.2e-42  Score=309.40  Aligned_cols=286  Identities=14%  Similarity=0.100  Sum_probs=242.4

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      ..+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++  ++|++|+.||.|++||+.+++...
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM--RRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS--CEEEEEETTSCEEEECTTSCEEEE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC--CEEEEEECCCCEEEEeCCCcceee
Confidence            44568999999999999999999999999998887777766 455556788888  799999999999999999999988


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .+..|...|++++|+|++..+++++.|+.|++||+++++.+..+. +|...|.+++|+|++. +|++++.|+.|++||++
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGR-NVLSASLDGTIRLWECG  211 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETT
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECC
Confidence            888999999999999999999999999999999999999999998 8999999999999995 99999999999999999


Q ss_pred             CCCCCCccceeeec---cC---------------------CceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          199 GDINDDDLLESVIN---VG---------------------TSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       199 ~~~~~~~~~~~~~~---~~---------------------~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      ++    ..+..+..   +.                     ..+.+++|+ +++.+|++++.||.|++||+++++.+..+.
T Consensus       212 ~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          212 TG----TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             TT----EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CC----ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            54    23333332   23                     344455556 678899999999999999999998877765


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  334 (389)
                      ..           |...+.+++|+|+++. +|++|+.||.|++||+.+++.     ++..+...|...|.++        
T Consensus       287 ~~-----------~~~~v~~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~--------  341 (420)
T 3vl1_A          287 SK-----------FTCSCNSLTVDGNNAN-YIYAGYENGMLAQWDLRSPEC-----PVGEFLINEGTPINNV--------  341 (420)
T ss_dssp             CT-----------TSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCTTS-----CSEEEEESTTSCEEEE--------
T ss_pred             cc-----------cCCCceeEEEeCCCCC-EEEEEeCCCeEEEEEcCCCcC-----chhhhhccCCCCceEE--------
Confidence            42           6689999999999875 578999999999999998643     2466663477788887        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       .+ +++++|++++.||.|++|++...
T Consensus       342 -~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          342 -YF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -EE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             -Ee-CCCCEEEEecCCccEEEEeccCC
Confidence             44 57789999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.4e-41  Score=297.24  Aligned_cols=271  Identities=15%  Similarity=0.207  Sum_probs=229.6

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-------------------CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-------------------DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ   71 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~   71 (389)
                      ..++++ ++.+++|++.  +.+..+.+                   ...|.+++|+|++++|++|+.|+.|++||+.+++
T Consensus        78 ~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~  156 (393)
T 1erj_A           78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK  156 (393)
T ss_dssp             EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            345544 6889999975  34444432                   1249999999999999999999999999999999


Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQF  150 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  150 (389)
                      .+..+.+|...|.+++|+|++  .+|++++.|++|++||+++++....+.. ...+.+++|+| ++..+++++.|+.|++
T Consensus       157 ~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~i  233 (393)
T 1erj_A          157 IVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRV  233 (393)
T ss_dssp             EEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             EEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            999999999999999999999  7999999999999999999998888875 57899999999 6788888889999999


Q ss_pred             EECcCCceeeeee------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC--------CCccceeeeccCCc
Q 016457          151 WDWRNKKQVACLE------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN--------DDDLLESVINVGTS  216 (389)
Q Consensus       151 wd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~  216 (389)
                      ||+++++.+..+.      .+|...|.+++|+|++. +|++++.|+.|++||+++...        .......+.+|...
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~  312 (393)
T 1erj_A          234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  312 (393)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc
Confidence            9999988777662      26889999999999996 999999999999999985421        11234456788999


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC------CCCeEEEEEec
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG------EGENLWVIGGT  290 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~l~~g~  290 (389)
                      |.+++|+ +++.+|++++.|+.|++||+.+++.+..+.+            |...|.+++|++      +++  +|++|+
T Consensus       313 v~~~~~~-~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~------------h~~~v~~v~~~~~~~~~p~~~--~l~sgs  377 (393)
T 1erj_A          313 VLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQG------------HRNSVISVAVANGSSLGPEYN--VFATGS  377 (393)
T ss_dssp             EEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEEEEEEC------------CSSCEEEEEECSSCTTCTTCE--EEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEECC------------CCCCEEEEEecCCcCcCCCCC--EEEEEC
Confidence            9999999 6788999999999999999999999988887            668999998876      556  899999


Q ss_pred             CCceEEEEEeccC
Q 016457          291 GAGTVGYFPVNYG  303 (389)
Q Consensus       291 ~dg~i~i~~~~~~  303 (389)
                      .||.|++|++...
T Consensus       378 ~Dg~i~iW~~~~~  390 (393)
T 1erj_A          378 GDCKARIWKYKKI  390 (393)
T ss_dssp             TTSEEEEEEEEEC
T ss_pred             CCCcEEECccccc
Confidence            9999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-42  Score=307.26  Aligned_cols=306  Identities=14%  Similarity=0.157  Sum_probs=244.5

Q ss_pred             EEecC-ceeeee-ec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCC---ce---eeeeecCCCCcEEEEEEeCCCCC
Q 016457           25 RFGLK-NSIQTN-FG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVT---GQ---YSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        25 ~w~~~-~~~~~~-~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~---~~---~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      .|+.. +.+..+ .+ .+.|++++|+| ++++|++|+.||+|+|||+.+   +.   ....+ +|...|.+++|+|++  
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~--  123 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF--  123 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS--
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC--
Confidence            47754 566667 55 79999999999 999999999999999999876   43   22233 499999999999988  


Q ss_pred             CEEEEEecCCeEEEEEcc---CCeEEEEEEc------------CCCCeEEEE--EeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           95 HVLHSCSSDGTIRAWDTR---SFHEVWSVTA------------GSQEIFCFS--FGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      .+|++|+.||+|++||+.   +++.+..+..            +...+.++.  +++++..+++++.|+.|++||+++++
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence            799999999999999995   5544444332            345566666  55678889999999999999999999


Q ss_pred             eeeeeeec--ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEec---CCCcEEE
Q 016457          158 QVACLEES--HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFG---ETNKHLW  231 (389)
Q Consensus       158 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~---~~~~~l~  231 (389)
                      .+..+. .  |...|++++|+|++. +|++|+.||.|++||++++    ..+..+. .+...|.+++|+|   +++.+|+
T Consensus       204 ~~~~~~-~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          204 RLQIIE-NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             EEEEEE-CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             eeEEEc-cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            999988 5  889999999999985 9999999999999999953    3444443 6777999998774   4677999


Q ss_pred             EEecCCcEEEEEcCCCceeEEeeccccccc-CCcc-------------CCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          232 CLTHIETLSIWDWKDGQNVASFENARSLAS-DSWT-------------LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      +++.|+.|++||+.+++++..+..+..... ..+.             ..|...|.+++|+ +++  +|++|+.||.|++
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~--~l~s~~~d~~i~~  354 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK--ILLTDEATSSIVM  354 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE--EEEEEGGGTEEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce--EEEecCCCCeEEE
Confidence            999999999999999999988886532111 1111             1277789999999 566  8999999999999


Q ss_pred             EEeccCCccccCCCeEEEe------------------------------------cccceeeeeccCCCcccCCCCCCC-
Q 016457          298 FPVNYGGAATIGPPEAVLV------------------------------------GGHTAVVRSVLPMPSVQGRPAQSH-  340 (389)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~v~~~~~~~~~~~~~~s~~-  340 (389)
                      ||+.+++.      +..+.                                    ..|...|+++         +|+++ 
T Consensus       355 wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i---------~~~~~~  419 (437)
T 3gre_A          355 FSLNELSS------SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI---------STCEVD  419 (437)
T ss_dssp             EETTCGGG------CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE---------EEEESS
T ss_pred             EECCCccc------ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE---------eeeccC
Confidence            99998765      23332                                    1277788888         88877 


Q ss_pred             -ceeEEEecCCCeEEEEe
Q 016457          341 -GIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       341 -~~~l~s~~~dg~v~iW~  357 (389)
                       +.+|+||+.||.|+||+
T Consensus       420 ~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          420 ETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SSEEEEEEETTSCEEEEC
T ss_pred             CceEEEEEcCCceEEEeC
Confidence             88999999999999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.9e-41  Score=298.71  Aligned_cols=314  Identities=15%  Similarity=0.180  Sum_probs=251.3

Q ss_pred             CCCeEEEEecC--ceeeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeec-------------CCCC
Q 016457           19 NVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECK-------------GHSS   81 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-------------~~~~   81 (389)
                      .++.+++|+..  +....+.+ .+.|++++|+| ++++|++|+.||.|++||+.+++....+.             +|..
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            34556666653  55666666 89999999999 99999999999999999999876655543             5999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC---eEEEeecCCeEEEEECcCCce
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD---YLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      .|.+++|+|++. .+|++++.||.|++||+.+++.+..+. +...+.++.++|.+.   .+++++.|+.|++||+++++.
T Consensus       101 ~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          101 SVETVQWYPHDT-GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             CEEEEEECTTCT-TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             cEEEEEEccCCC-cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            999999999432 699999999999999999999988887 568899999998544   788888899999999999999


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC------------CccceeeeccCCceeeEEEecCC
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND------------DDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      +..+. .|...|.+++|+|+++.+|++++.||.|++||+++....            .........|...|.+++|+ ++
T Consensus       179 ~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~  256 (408)
T 4a11_B          179 SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SD  256 (408)
T ss_dssp             CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TT
T ss_pred             eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CC
Confidence            98888 899999999999999656999999999999999865311            11112225678899999999 78


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      +.+|++++.|+.|++||+.+++....+........      ............ +.  .+++++.++.|++||+.+++. 
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~--~~~~~~~~~~i~v~d~~~~~~-  326 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS------KKGLKFTVSCGC-SS--EFVFVPYGSTIAVYTVYSGEQ-  326 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC------SSCCCCEECCSS-SS--CEEEEEETTEEEEEETTTCCE-
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccc------cccceeEEecCC-Cc--eEEEEecCCEEEEEECcCCcc-
Confidence            89999999999999999998876654433211000      111112222222 33  356667899999999998776 


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                           +..+. +|...|.++         +|+|++++|++|+.||.|++|++...
T Consensus       327 -----~~~~~-~~~~~v~~~---------~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          327 -----ITMLK-GHYKTVDCC---------VFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             -----EEEEC-CCSSCEEEE---------EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             -----eeeec-cCCCeEEEE---------EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence                 66665 899999999         99999999999999999999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.5e-41  Score=304.21  Aligned_cols=303  Identities=15%  Similarity=0.182  Sum_probs=259.7

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ..++++.|++|++||+.  +.+..+.+ .+.|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|+
T Consensus       134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  212 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV  212 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEe
Confidence            56788999999999985  46667777 8999999999988 99999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCe-----------------------EEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFH-----------------------EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      +...+.++++|+.||+|++||+.++.                       .+..+.+|...+.++.  +++..+++++.|+
T Consensus       213 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~  290 (464)
T 3v7d_B          213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDN  290 (464)
T ss_dssp             ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTS
T ss_pred             cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCC
Confidence            53222799999999999999998764                       2556778888888875  4688999999999


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      .|++||+++++.+..+. +|...|.+++|+|++. .+++|+.||.|++||++++    ..+..+..|...|.+++|+   
T Consensus       291 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~---  361 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLS---  361 (464)
T ss_dssp             CEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEC---
T ss_pred             eEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEc---
Confidence            99999999999999998 8999999999999996 9999999999999999854    5677778899999999997   


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      +.+|++++.||.|++||+.++.....+.             +...+..++|+++++  ++++|+ ||.|++||+.+++. 
T Consensus       362 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~l~~~~-dg~i~iwd~~~g~~-  424 (464)
T 3v7d_B          362 DKFLVSAAADGSIRGWDANDYSRKFSYH-------------HTNLSAITTFYVSDN--ILVSGS-ENQFNIYNLRSGKL-  424 (464)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEE-------------CTTCCCEEEEEECSS--EEEEEE-TTEEEEEETTTCCE-
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeec-------------CCCCccEEEEEeCCC--EEEEec-CCeEEEEECCCCcE-
Confidence            3699999999999999999887666554             446677889999998  888887 89999999999876 


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                           +.....+|...|.++         +|+ +..++++++.||.+.+|-++
T Consensus       425 -----~~~~~~~~~~~v~~v---------~~~-~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          425 -----VHANILKDADQIWSV---------NFK-GKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             -----EESCTTTTCSEEEEE---------EEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             -----EehhhccCCCcEEEE---------Eec-CCEEEEEEEeCCeEEEEEee
Confidence                 554445788999999         886 45566777788877776554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.6e-41  Score=340.83  Aligned_cols=326  Identities=17%  Similarity=0.215  Sum_probs=274.2

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...++++.|++|++|+..  +.+..+.+ .+.|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~  707 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF  707 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE
Confidence            356788999999999985  46677777 899999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee------
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL------  162 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------  162 (389)
                      +|++...++++|+.|+.|++||+.+++.+..+.+|...|++++|+|++..+++++.||.|++||+++++....+      
T Consensus       708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence            99654468999999999999999999999999999999999999999999999999999999999876543322      


Q ss_pred             ------------------------------------------------eecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          163 ------------------------------------------------EESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       163 ------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                                                                      ..+|...+.+++|+|++. .+++++.||.|++
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~v  866 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVEL  866 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEE
Confidence                                                            125778899999999996 9999999999999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee------E--------------Eee
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV------A--------------SFE  254 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~--------------~~~  254 (389)
                      ||+.++    ..+..+..|...|.+++|+ +++.++++++.|+.|++|++.+....      .              ...
T Consensus       867 wd~~~~----~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  941 (1249)
T 3sfz_A          867 WNIDSR----LKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD  941 (1249)
T ss_dssp             EETTTT----EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEE
T ss_pred             EEcCCC----ceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEec
Confidence            999954    5567778899999999999 78899999999999999997532110      0              000


Q ss_pred             cccc-----cccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457          255 NARS-----LASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM  329 (389)
Q Consensus       255 ~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  329 (389)
                      ....     .........+...+.+++|+|+++  ++++|+.+|.|++|++.+++.      +..+. +|...|.++   
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~~g~~~g~i~i~d~~~~~~------~~~~~-~h~~~v~~l--- 1009 (1249)
T 3sfz_A          942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAIKIIELPNNRV------FSSGV-GHKKAVRHI--- 1009 (1249)
T ss_dssp             SSSSEEEEEESSCCEEEECCSCEEEEEECTTSS--EEEEEETTSCCEEEETTTTSC------EEECC-CCSSCCCCE---
T ss_pred             CCcceEEEecCcceEEEcccCcEEEEEEcCCCC--EEEEEcCCCCEEEEEcCCCce------eeecc-cCCCceEEE---
Confidence            0000     000000111346789999999999  899999999999999998776      45554 899999999   


Q ss_pred             CcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          330 PSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       330 ~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                            +|+|+|++|++++.||.|++|++...
T Consensus      1010 ------~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A         1010 ------QFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             ------EECSSSSCEEEECSSSBEEEEETTTT
T ss_pred             ------EECCCCCEEEEEcCCCEEEEEECCCC
Confidence                  99999999999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-42  Score=330.52  Aligned_cols=328  Identities=11%  Similarity=0.051  Sum_probs=243.6

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-----------eeecCC
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-----------GECKGH   79 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-----------~~~~~~   79 (389)
                      ..++++.|++|++||+.  +.+..+...+.|++++|+|++++|++|+.||.|++||+.+++..           ..+.+|
T Consensus        71 ~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           71 YLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             EEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             EEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence            47889999999999985  45666666778999999999999999999999999999988753           345679


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC------------------CCCeEEEEEeCCCCeEEE
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG------------------SQEIFCFSFGGSTDYLLA  141 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~  141 (389)
                      .+.|.+++|+|++. ..|++|+.||.| +||+++++.+..+..|                  ...|++++|+|++..|++
T Consensus       151 ~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          151 LSPIVSIQWNPRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             CCCCCEEEEETTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             CCCeEEEEEccCCC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            99999999999642 589999999999 9999999999888765                  467999999999999999


Q ss_pred             eecCCeEEEEECcCCceeee--ee--ec-------------ccCCeeEEEEec----CCCCeEEEEeCC-----CcEEEE
Q 016457          142 AGCGSQIQFWDWRNKKQVAC--LE--ES-------------HVEDVTQVHFVP----NNQNKVVSASVD-----GLICTF  195 (389)
Q Consensus       142 ~~~d~~i~iwd~~~~~~~~~--~~--~~-------------~~~~v~~~~~~~----~~~~~l~~~~~d-----~~i~i~  195 (389)
                      ++.||.|++||+++++++..  +.  ..             |...|++++|++    ++..++++|+.+     ..+.+|
T Consensus       229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~  308 (902)
T 2oaj_A          229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI  308 (902)
T ss_dssp             EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred             EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence            99999999999999887653  21  01             244789999954    332356666544     245555


Q ss_pred             e-----------------------------------------------------------------------cCCCCCCC
Q 016457          196 D-----------------------------------------------------------------------TGGDINDD  204 (389)
Q Consensus       196 d-----------------------------------------------------------------------~~~~~~~~  204 (389)
                      +                                                                       +.++....
T Consensus       309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~  388 (902)
T 2oaj_A          309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD  388 (902)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred             ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence            5                                                                       22110000


Q ss_pred             c---cceeeeccCCcee----------------------------------eEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          205 D---LLESVINVGTSVG----------------------------------KVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       205 ~---~~~~~~~~~~~i~----------------------------------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .   ....+..|...|+                                  .++|+ +++++|++++.|++|++||+.++
T Consensus       389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g  467 (902)
T 2oaj_A          389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHG  467 (902)
T ss_dssp             CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCC
T ss_pred             ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCc
Confidence            0   0000011112333                                  34455 67889999999999999999877


Q ss_pred             cee----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc-------c--------
Q 016457          248 QNV----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT-------I--------  308 (389)
Q Consensus       248 ~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~-------~--------  308 (389)
                      ...    ......+.+     ..+|...|.+++|+|+++  +||+|+.||+|+||++.+++...       .        
T Consensus       468 ~~~~~~~~~~~l~~~~-----~~~h~~~V~svafspdg~--~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~  540 (902)
T 2oaj_A          468 DIQDNASFEVNLSRTL-----NKAKELAVDKISFAAETL--ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRR  540 (902)
T ss_dssp             TTTTTBCEEEEHHHHT-----TCSSSCCEEEEEEETTTT--EEEEEETTSCEEEEEEEECCC---------------CCS
T ss_pred             cccCCceEEeechhhc-----CCCCCCceeEEEecCCCC--eEEEEecCcEEEEEEecCccccCccccCCCcccceeeee
Confidence            421    111100000     013778999999999999  89999999999999998763200       0        


Q ss_pred             ------------------------CCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          309 ------------------------GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       309 ------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                                              ..++..+. +|.+.|+++         +||||| +||+|+.||+|++||++..
T Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~sv---------afSpdG-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAI---------NNSNIG-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             CCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEE---------EECBTS-EEEEEETTSEEEEEETTTT
T ss_pred             ccccCCccccccccccCCCCCCCccceeEEEE-cCCCcEEEE---------EecCCc-EEEEEeCCCcEEEEECCCC
Confidence                                    01244554 799999999         999999 9999999999999998765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.2e-42  Score=300.26  Aligned_cols=285  Identities=10%  Similarity=0.054  Sum_probs=223.2

Q ss_pred             CcceEEEeecCCCCeEEEEecC-------CeEEEEeCCCcee----------eeeecCCCCcEEEEEEeCCCCCCEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLST-------NVVKLYSPVTGQY----------SGECKGHSSTVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d-------~~i~iw~~~~~~~----------~~~~~~~~~~v~~i~~~~~~~~~~l~s~  100 (389)
                      .-+|++++|+||+++|++|+.+       +.|++|++..+..          ...+.+|...|.++++..    ..+++|
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~~g   89 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIILVG   89 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEEEE
Confidence            5689999999999999999753       3599999875432          123567888999988864    355554


Q ss_pred             -----------ecCCeEEEEEccCCeE----EEEEE-----cCCCCeEEEEEeCCCCeEEEee--cCCeEEEEECcCCce
Q 016457          101 -----------SSDGTIRAWDTRSFHE----VWSVT-----AGSQEIFCFSFGGSTDYLLAAG--CGSQIQFWDWRNKKQ  158 (389)
Q Consensus       101 -----------~~dg~i~iwd~~~~~~----~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~  158 (389)
                                 +.|+.+++|++.....    .....     .+...+.+++|+|++..+++++  .|+.|++||+++++.
T Consensus        90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                       4578899999875432    11221     1245688999999999987654  489999999999999


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-  237 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-  237 (389)
                      +..+.  |...|.+++|+|++. ++++++.+ .+.+|+..++.  .........|...|.+++|+ +++.++++++.|+ 
T Consensus       170 ~~~~~--~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~  242 (365)
T 4h5i_A          170 KFEIE--TRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGS--CIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKG  242 (365)
T ss_dssp             EEEEE--CSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCC--EEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSS
T ss_pred             EEEeC--CCCceEEEEEccCCc-eEEeccce-eEEEEEeccCc--ceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCc
Confidence            98886  788899999999996 88888855 56666665432  11122334577889999999 7888999998887 


Q ss_pred             ---cEEEEEcCCCcee----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457          238 ---TLSIWDWKDGQNV----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP  310 (389)
Q Consensus       238 ---~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~  310 (389)
                         .+++|++......    ..+..            |...|.+++|+|+|+  +|++|+.|+.|+|||+.+++.     
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~------------~~~~V~~~~~Spdg~--~lasgs~D~~V~iwd~~~~~~-----  303 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTN------------RFKGITSMDVDMKGE--LAVLASNDNSIALVKLKDLSM-----  303 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEES------------SCSCEEEEEECTTSC--EEEEEETTSCEEEEETTTTEE-----
T ss_pred             ceeEEeecccccceecceeeeeecC------------CCCCeEeEEECCCCC--ceEEEcCCCEEEEEECCCCcE-----
Confidence               6888998766432    23333            778999999999999  999999999999999998776     


Q ss_pred             CeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       311 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                       +..+..+|...|+++         +|||||++|||||.|++||||++....
T Consensus       304 -~~~~~~gH~~~V~~v---------~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          304 -SKIFKQAHSFAITEV---------TISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             -EEEETTSSSSCEEEE---------EECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             -EEEecCcccCCEEEE---------EECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence             667666999999999         999999999999999999999997553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-40  Score=312.75  Aligned_cols=310  Identities=12%  Similarity=0.109  Sum_probs=256.3

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-Cc---ceEEEeecCC-CCeEEEEecCCeEEEEeCCCceeeeee-c---CCCC
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DD---YVFEIVPKND-WSLMAVSLSTNVVKLYSPVTGQYSGEC-K---GHSS   81 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~---~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~-~---~~~~   81 (389)
                      ..++++.|+.|++|+..  +.+..+.+ ..   .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .   +|..
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence            47788999999999986  35566665 66   8999999999 999999999999999999999999988 6   8999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC----CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG----SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      .|.+++|+ ++  .+|++++.|+.|++||+.+++.+..+..+    ...+.++.|. ++..+++++.|+.|++||+++++
T Consensus       255 ~v~~~~~~-~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~  330 (615)
T 1pgu_A          255 GIFALSWL-DS--QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE  330 (615)
T ss_dssp             CEEEEEES-SS--SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE
T ss_pred             ceEEEEEc-CC--CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc
Confidence            99999999 77  79999999999999999999999999877    3678888887 88999999999999999999888


Q ss_pred             eeeeeeecccCCeeEEEEecC---------------------------------CCCeEEEEeCCCcEEEEecCCCCC--
Q 016457          158 QVACLEESHVEDVTQVHFVPN---------------------------------NQNKVVSASVDGLICTFDTGGDIN--  202 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~~l~~~~~d~~i~i~d~~~~~~--  202 (389)
                      .+..+. +|...|++++| |+                                 +. .+++++.|+.|++||+.++..  
T Consensus       331 ~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~  407 (615)
T 1pgu_A          331 VLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGS  407 (615)
T ss_dssp             EEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSS
T ss_pred             EEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEEEEEcccCcccC
Confidence            777775 55555555544 32                                 42 566666666666666542100  


Q ss_pred             --------------------------------------------------------------------CCccc-eeeecc
Q 016457          203 --------------------------------------------------------------------DDDLL-ESVINV  213 (389)
Q Consensus       203 --------------------------------------------------------------------~~~~~-~~~~~~  213 (389)
                                                                                          ..... ..+..|
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~  487 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL  487 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCc
Confidence                                                                                00000 334457


Q ss_pred             CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC----------CCCe
Q 016457          214 GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG----------EGEN  283 (389)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~  283 (389)
                      ...|.+++|+ +++++|++++.|+.|++||+.+++.+..+...           |...|.+++|+|          +++ 
T Consensus       488 ~~~v~~~~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------h~~~v~~~~~sp~~~~~~~~~~~~~-  554 (615)
T 1pgu_A          488 RAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAF-----------RTSKINAISWKPAEKGANEEEIEED-  554 (615)
T ss_dssp             SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSCC-----------CSSCEEEEEECCCC------CCSCC-
T ss_pred             cCceEEEEEC-CCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-----------CCCceeEEEEcCccccccccccCCC-
Confidence            7899999999 78899999999999999999999888776641           568999999999          888 


Q ss_pred             EEEEEecCCceEEEEEeccC-CccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          284 LWVIGGTGAGTVGYFPVNYG-GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                       +|++|+.||.|++|++.++ +.      +..+ .+|...|.++         +|+|+++ |++++.||.|++|+++.
T Consensus       555 -~l~~~~~dg~i~iw~~~~~~~~------~~~~-~~h~~~v~~l---------~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          555 -LVATGSLDTNIFIYSVKRPMKI------IKAL-NAHKDGVNNL---------LWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -EEEEEETTSCEEEEESSCTTCC------EEET-TSSTTCEEEE---------EEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             -EEEEEcCCCcEEEEECCCCcee------chhh-hcCccceEEE---------EEcCCCC-eEEecCCceEEEEeeec
Confidence             8999999999999999986 33      4555 4899999999         9999999 99999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-41  Score=291.56  Aligned_cols=282  Identities=17%  Similarity=0.240  Sum_probs=244.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE-
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-  116 (389)
                      .+.|.+++|+|||+.++++..++.+.+|............+|...|.+++|+|++  ++|++++ ||.|++||+.+++. 
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSS--SEEEEEC-BSEEEEEETTSTTCC
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCC--cEEEEcC-CCeEEEEECCCCCce
Confidence            6789999999999999999888877777666554444455799999999999999  7999998 99999999987643 


Q ss_pred             --EEEEE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          117 --VWSVT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       117 --~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                        +..+.  .|...|.+++|+|++..+++++.|+.|++||+++++  ....+. .|...+.+++|+|++. .+++++.||
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg  163 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSK-VCFSCCSDG  163 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCC-EEEEEeCCC
Confidence              33444  678999999999999999999999999999999877  455666 7889999999999995 999999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      .|++||++++    ..+..+..|...+.+++|+ +++.+|++++.|+.|++||+++++.+..+.             +..
T Consensus       164 ~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------~~~  225 (337)
T 1gxr_A          164 NIAVWDLHNQ----TLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-------------FTS  225 (337)
T ss_dssp             CEEEEETTTT----EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------CSS
T ss_pred             cEEEEeCCCC----ceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEeeec-------------CCC
Confidence            9999999854    4566677789999999999 678899999999999999999998887765             557


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      .+.+++|+|+++  ++++++.+|.|++|++.+++.       ..+. .|...|.++         +|+|++++|++++.|
T Consensus       226 ~v~~~~~s~~~~--~l~~~~~~~~i~~~~~~~~~~-------~~~~-~~~~~v~~~---------~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          226 QIFSLGYCPTGE--WLAVGMESSNVEVLHVNKPDK-------YQLH-LHESCVLSL---------KFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSS--EEEEEETTSCEEEEETTSSCE-------EEEC-CCSSCEEEE---------EECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCC--EEEEEcCCCcEEEEECCCCCe-------EEEc-CCccceeEE---------EECCCCCEEEEecCC
Confidence            899999999999  889999999999999998764       4554 899999999         999999999999999


Q ss_pred             CeEEEEeccCC
Q 016457          351 GRLCCWLSDDS  361 (389)
Q Consensus       351 g~v~iW~~~~~  361 (389)
                      |.|++|++...
T Consensus       287 g~i~~~~~~~~  297 (337)
T 1gxr_A          287 NLLNAWRTPYG  297 (337)
T ss_dssp             SEEEEEETTTC
T ss_pred             CcEEEEECCCC
Confidence            99999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-40  Score=283.77  Aligned_cols=254  Identities=16%  Similarity=0.245  Sum_probs=211.7

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCCcEEEEEEeCC--CCCCEEEEEecCCeEEE
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSSTVNQISFSGP--STPHVLHSCSSDGTIRA  108 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~dg~i~i  108 (389)
                      .+.+ .+.|++++|+|+|++||+|+.|++|+|||+.+  ++.+..+.+|.+.|.+++|+++  +  ++|++|+.|++|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g--~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TILASCSYDGKVMI   81 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC--SEEEEEETTTEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC--CEEEEEcCCCEEEE
Confidence            3445 78999999999999999999999999999974  4678889999999999999864  5  79999999999999


Q ss_pred             EEccCCe--EEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCC---
Q 016457          109 WDTRSFH--EVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNN---  179 (389)
Q Consensus       109 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~---  179 (389)
                      ||+.+++  .+..+..|...|.+++|+|+  +..+++++.|+.|++||++++..  ...+. +|...|.+++|+|++   
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC---
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcccc
Confidence            9998874  56677889999999999987  77899999999999999987642  34455 899999999999973   


Q ss_pred             ---------CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC--CcEEEEEecCCcEEEEEcCCCc
Q 016457          180 ---------QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET--NKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       180 ---------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                               ..+|++|+.|+.|++||++++.........+.+|...|.+++|+|..  +.+|++++.|++|++||+.+..
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                     14899999999999999985432223455677899999999999542  5899999999999999998643


Q ss_pred             e---eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          249 N---VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       249 ~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .   ...+...          .|...+.+++|+|+++  +|++++.||.|++|+...
T Consensus       241 ~~~~~~~~~~~----------~~~~~v~~~~~s~~g~--~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          241 GPWKKTLLKEE----------KFPDVLWRASWSLSGN--VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCCEEEESSSS----------CCSSCEEEEEECSSSC--CEEEEETTSCEEEEEECT
T ss_pred             Cccceeeeecc----------cCCCcEEEEEECCCCC--EEEEEcCCCcEEEEEECC
Confidence            1   1222111          1668899999999999  889999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-40  Score=283.17  Aligned_cols=256  Identities=14%  Similarity=0.210  Sum_probs=211.7

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC--CeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEE
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS--FHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQ  149 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  149 (389)
                      ..+.+|.+.|.+++|+|++  ++|++|+.|++|+|||+..  .+.+.++.+|...|.+++|+|+  +..|++++.|++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g--~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYG--KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             EECCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eeccCCcCceEEEEECCCC--CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            4567899999999999999  7999999999999999974  4677899999999999999864  77889999999999


Q ss_pred             EEECcCCc--eeeeeeecccCCeeEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457          150 FWDWRNKK--QVACLEESHVEDVTQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE  225 (389)
Q Consensus       150 iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (389)
                      +||+++++  .+..+. .|...|.+++|+|+  +. +|++++.|+.|++||+++...  .....+..|...|.+++|+|.
T Consensus        81 iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSC--BCCEEEECCSSCEEEEEECCC
T ss_pred             EEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCc--eeeeeeecccCccceEeecCC
Confidence            99998874  455565 79999999999997  64 999999999999999985421  123456788999999999953


Q ss_pred             ------------CCcEEEEEecCCcEEEEEcCCCc----eeEEeecccccccCCccCCCCCceeeecccCCCC-eEEEEE
Q 016457          226 ------------TNKHLWCLTHIETLSIWDWKDGQ----NVASFENARSLASDSWTLDDVDYFVDCHYPGEGE-NLWVIG  288 (389)
Q Consensus       226 ------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~  288 (389)
                                  ++.+|++++.|+.|++||+++++    ....+.+            |...|.+++|+|++. ..+|++
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~------------H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC------------CCCceEEEEECCCCCCceEEEE
Confidence                        25689999999999999998765    4455555            779999999999851 128899


Q ss_pred             ecCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          289 GTGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       289 g~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      |+.|+.|++||+.+...    .....+.  .+|...|.++         +|+|+|++|++++.||.|++|+...
T Consensus       225 ~s~D~~v~iWd~~~~~~----~~~~~~~~~~~~~~~v~~~---------~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQG----PWKKTLLKEEKFPDVLWRA---------SWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EETTSCEEEEEESSTTS----CCEEEESSSSCCSSCEEEE---------EECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EECCCcEEEEEeCCCCC----ccceeeeecccCCCcEEEE---------EECCCCCEEEEEcCCCcEEEEEECC
Confidence            99999999999987532    0111222  3677889999         9999999999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=303.60  Aligned_cols=307  Identities=16%  Similarity=0.187  Sum_probs=232.0

Q ss_pred             cCcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-----------eeeeecCCC------------CcEEEEEEeCCCC
Q 016457           37 GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-----------YSGECKGHS------------STVNQISFSGPST   93 (389)
Q Consensus        37 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~~   93 (389)
                      ..+.|++++|+|++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++.
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            37899999999999999999999999999998776           577888998            8899999999873


Q ss_pred             CCEEEEEecCCeEEEEEccCCeEE---------------------------------------EE-EEcCCCCeEEEEEe
Q 016457           94 PHVLHSCSSDGTIRAWDTRSFHEV---------------------------------------WS-VTAGSQEIFCFSFG  133 (389)
Q Consensus        94 ~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  133 (389)
                      ..+|++++.|++|++||+.++...                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence            348999999999999999865432                                       12 25689999999999


Q ss_pred             CCCCeEEEeecCCeEEEEECcC-Cceee-------eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc
Q 016457          134 GSTDYLLAAGCGSQIQFWDWRN-KKQVA-------CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD  205 (389)
Q Consensus       134 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  205 (389)
                      |++..++++ .|+.|++||+++ ++.+.       .+. +|...|++++|+|+++++|++|+.||.|++||++++.....
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            998888887 899999999994 44444       244 78999999999999844999999999999999996643222


Q ss_pred             cceeeeccCC------------ceeeEEEecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCC--
Q 016457          206 LLESVINVGT------------SVGKVGFFGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVD--  270 (389)
Q Consensus       206 ~~~~~~~~~~------------~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~--  270 (389)
                      ....+..+..            .|.+++|+ +++.+|++++. +.|++||+++ ++++..+..+...........+..  
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence            3455556654            89999999 68899999998 9999999997 788877776431110000000001  


Q ss_pred             -ceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee------------------------e
Q 016457          271 -YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR------------------------S  325 (389)
Q Consensus       271 -~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~------------------------~  325 (389)
                       .+..++|+|+++  +|++|+.||.|++||+.+++.       ..+. +|..+..                        .
T Consensus       343 ~~~~~~~~s~~~~--~l~s~s~dg~v~iwd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (447)
T 3dw8_B          343 FDKFECCWNGSDS--VVMTGSYNNFFRMFDRNTKRD-------ITLE-ASRENNKPRTVLKPRKVCASGKRKKDEISVDS  412 (447)
T ss_dssp             GCCCCEEECTTSS--EEEEECSTTEEEEEETTTCCE-------EEEE-CCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred             ccceEEEECCCCC--EEEEeccCCEEEEEEcCCCcc-------eeee-ecccccccccccCCccccccCCcccccccccc
Confidence             133489999999  889999999999999998765       2222 2221110                        1


Q ss_pred             ccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          326 VLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       326 ~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      +-....+..++|+|++.+||+++.++ +++|..
T Consensus       413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            11222334459999999999999775 778764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-41  Score=327.35  Aligned_cols=330  Identities=11%  Similarity=0.051  Sum_probs=242.1

Q ss_pred             CCccccCCCCeEEEEecCceee--eeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           12 PKSQSCDNVNSIKRFGLKNSIQ--TNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ...|+++.|++|++|+......  .+.+...|.+++|+| +++|++++.|++|+|||+.+++.+..+. |...|++++|+
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~s  107 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTD  107 (902)
T ss_dssp             TEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECC
T ss_pred             CEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence            4678999999999999865332  233378899999999 8899999999999999999999888886 77899999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEE-----------EEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEV-----------WSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      |++  ++|++|+.||+|++||+++++..           ..+.+|...|.+++|+|++ ..+++++.|+.| +||+++++
T Consensus       108 p~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~  184 (902)
T 2oaj_A          108 ASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE  184 (902)
T ss_dssp             TTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred             CCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence            999  79999999999999999988764           1235578899999999965 577777789999 99999998


Q ss_pred             eeeeeeecc------------------cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc-cceeee-------
Q 016457          158 QVACLEESH------------------VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD-LLESVI-------  211 (389)
Q Consensus       158 ~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------  211 (389)
                      .+..+. .|                  ...|++++|+|++. +|++++.||.|++||++++..... .+....       
T Consensus       185 ~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~  262 (902)
T 2oaj_A          185 IKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD  262 (902)
T ss_dssp             EEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred             eEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence            887776 44                  47799999999995 999999999999999986531100 000000       


Q ss_pred             ------ccCCceeeEEEec---CC-CcEEEEEecC-----CcEEEEEc--------------------------------
Q 016457          212 ------NVGTSVGKVGFFG---ET-NKHLWCLTHI-----ETLSIWDW--------------------------------  244 (389)
Q Consensus       212 ------~~~~~i~~~~~~~---~~-~~~l~~~~~d-----~~i~i~d~--------------------------------  244 (389)
                            .+...|.+++|++   ++ +.+|++++.+     ..+.+|++                                
T Consensus       263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  342 (902)
T 2oaj_A          263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN  342 (902)
T ss_dssp             CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred             CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence                  1234688888863   22 2455666554     25666663                                


Q ss_pred             ---------------------------------------CCCceeEEe-eccccc-------------------------
Q 016457          245 ---------------------------------------KDGQNVASF-ENARSL-------------------------  259 (389)
Q Consensus       245 ---------------------------------------~~~~~~~~~-~~~~~~-------------------------  259 (389)
                                                             .++...... ..+..+                         
T Consensus       343 ~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~  422 (902)
T 2oaj_A          343 VPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS  422 (902)
T ss_dssp             SCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHh
Confidence                                                   111100000 000000                         


Q ss_pred             --ccCCc-cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe------cccceeeeeccCCC
Q 016457          260 --ASDSW-TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV------GGHTAVVRSVLPMP  330 (389)
Q Consensus       260 --~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~  330 (389)
                        ....+ -.+|...+..++|+|+++  +|++|+.||+|++||+.++.....  ....+.      .+|...|.++    
T Consensus       423 ~~~~~~~~l~G~~~~v~sv~~spdg~--~laSgs~DgtVrlWd~~~g~~~~~--~~~~~~l~~~~~~~h~~~V~sv----  494 (902)
T 2oaj_A          423 AAQNKDYLLKGGVRTKRQKLPAEYGT--AFITGHSNGSVRIYDASHGDIQDN--ASFEVNLSRTLNKAKELAVDKI----  494 (902)
T ss_dssp             TTBCCCCSCCCSBCCCCCCCCCSEEE--EEEEEETTSEEEEEESSCCTTTTT--BCEEEEHHHHTTCSSSCCEEEE----
T ss_pred             cccCCCCcccCCcCCCCcccccccCc--EEEEecCCCcEEEEECCCccccCC--ceEEeechhhcCCCCCCceeEE----
Confidence              00000 012445566678889888  899999999999999998754110  111111      2788999999    


Q ss_pred             cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          331 SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       331 ~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                           +|+|||++||+|+.||+|+||+++..
T Consensus       495 -----afspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          495 -----SFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             -----EEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             -----EecCCCCeEEEEecCcEEEEEEecCc
Confidence                 99999999999999999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.1e-40  Score=318.05  Aligned_cols=291  Identities=16%  Similarity=0.184  Sum_probs=256.3

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      .+.+.+ .+.|.+++|+|++++||+|+.+|.|+|||+.+++.+..+.+|...|.+++|+|++  ++|++++.||.|++||
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK--NWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG--TEEEEEETTSEEEEEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC--CEEEEEeCCCeEEEEE
Confidence            455666 8899999999999999999999999999999999999999999999999999999  7999999999999999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEec-CCCCeEEEEeC
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVP-NNQNKVVSASV  188 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~  188 (389)
                      +.+++.+..+..|...|++++|+|++..+++++.||.|++||++++ .....+. +|...|.+++|+| ++ ..|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDP-STFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEE-EEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCC-CEEEEEeC
Confidence            9999999999999999999999999999999999999999999987 5556666 8999999999999 66 49999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeec-cCCceeeEEEec-CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          189 DGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFG-ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      ||.|++||+.++    ........ +...+..++|+| +++.++++++.|+.|++||+.+++.+..+..           
T Consensus       162 dg~v~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------  226 (814)
T 3mkq_A          162 DRTVKVWSLGQS----TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-----------  226 (814)
T ss_dssp             TSEEEEEETTCS----SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC-----------
T ss_pred             CCeEEEEECCCC----cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-----------
Confidence            999999999854    23334443 348899999994 1788999999999999999999999888876           


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce--eE
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI--FG  344 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~--~l  344 (389)
                       |...+.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. .|...|.++         +|+|++.  ++
T Consensus       227 -~~~~v~~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~------~~~~~-~~~~~v~~~---------~~~~~~~~~~~  287 (814)
T 3mkq_A          227 -HMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV------EKTLN-VGLERSWCI---------ATHPTGRKNYI  287 (814)
T ss_dssp             -CSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCSE------EEEEC-CSSSSEEEE---------EECTTCGGGEE
T ss_pred             -CCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcE------EEEee-cCCCcEEEE---------EEccCCCceEE
Confidence             668999999999999  889999999999999998776      55554 788899999         9999987  34


Q ss_pred             EEecCCCeEEEEeccCC
Q 016457          345 WTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~~  361 (389)
                      ++++ |+.+.+|++...
T Consensus       288 ~~~~-~~~~~~~~~~~~  303 (814)
T 3mkq_A          288 ASGF-DNGFTVLSLGND  303 (814)
T ss_dssp             EEEE-TTEEEEEECSCC
T ss_pred             EEEe-CCCEEEEEcCCC
Confidence            5544 777889987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-39  Score=295.41  Aligned_cols=284  Identities=14%  Similarity=0.222  Sum_probs=242.9

Q ss_pred             eeeeeec-Ccc-eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           31 SIQTNFG-DDY-VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        31 ~~~~~~~-~~~-v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ....+.+ .+. +.++.+  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++   +|++|+.||+|++
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v  187 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence            3445666 444 577666  45799999999999999999999999999999999999999876   9999999999999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEe--CCCCeEEEeecCCeEEEEECcCCce-----------------------eeeee
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFG--GSTDYLLAAGCGSQIQFWDWRNKKQ-----------------------VACLE  163 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~-----------------------~~~~~  163 (389)
                      ||+.+++.+..+.+|...|.+++|+  +++..+++++.|+.|++||++++..                       +..+.
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            9999999999999999999999998  4667888899999999999987653                       33444


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD  243 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d  243 (389)
                       +|...+.++  ++++. .+++++.|+.|++||++++    ..+..+..|...|.+++|+ +++.++++++.|+.|++||
T Consensus       268 -~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd  338 (464)
T 3v7d_B          268 -GHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWD  338 (464)
T ss_dssp             -CCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEE
T ss_pred             -CccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEE
Confidence             788888877  45564 9999999999999999854    5567777899999999999 7888999999999999999


Q ss_pred             cCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceee
Q 016457          244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVV  323 (389)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  323 (389)
                      +.+++++..+..            |...+.++.|++  +  +|++|+.||.|++||+.++..      ....  .|...+
T Consensus       339 ~~~~~~~~~~~~------------h~~~v~~~~~~~--~--~l~s~s~dg~v~vwd~~~~~~------~~~~--~~~~~~  394 (464)
T 3v7d_B          339 LENGELMYTLQG------------HTALVGLLRLSD--K--FLVSAAADGSIRGWDANDYSR------KFSY--HHTNLS  394 (464)
T ss_dssp             TTTTEEEEEECC------------CSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCE------EEEE--ECTTCC
T ss_pred             CCCCcEEEEEeC------------CCCcEEEEEEcC--C--EEEEEeCCCcEEEEECCCCce------eeee--cCCCCc
Confidence            999999999886            668999999984  5  889999999999999998654      2222  355666


Q ss_pred             eeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          324 RSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                      ..+         +|++++++|++|+ ||.|++|++..+.
T Consensus       395 ~~~---------~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          395 AIT---------TFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             CEE---------EEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             cEE---------EEEeCCCEEEEec-CCeEEEEECCCCc
Confidence            666         8999999999999 9999999998763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.5e-40  Score=293.72  Aligned_cols=277  Identities=17%  Similarity=0.271  Sum_probs=238.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|.+++|  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  ++  ++|++|+.||+|++||+.+++.+
T Consensus       133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE--RVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC--CEEEEEcCCCeEEEEECCCCcEE
Confidence            567888887  7889999999999999999999999999999999999999  55  69999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      ..+..|...|.+++|+  ++.+++++.||.|++||+++++..   ..+. +|...|.+++|  ++ +.+++|+.||.|++
T Consensus       207 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~-~~l~s~~~dg~i~v  280 (435)
T 1p22_A          207 NTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DD-KYIVSASGDRTIKV  280 (435)
T ss_dssp             EEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ET-TEEEEEETTSEEEE
T ss_pred             EEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CC-CEEEEEeCCCeEEE
Confidence            9999999999999996  468999999999999999987765   4555 89999999999  44 49999999999999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ||++++    ..+..+..|...|.++.+.   +.++++++.|+.|++||+++++++..+..            |...+.+
T Consensus       281 wd~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------h~~~v~~  341 (435)
T 1p22_A          281 WNTSTC----EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG------------HEELVRC  341 (435)
T ss_dssp             EETTTC----CEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECC------------CSSCEEE
T ss_pred             EECCcC----cEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeC------------CcCcEEE
Confidence            999954    5567777899999999985   45999999999999999999999998886            6689999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCcccc--C-CCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI--G-PPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      ++|  ++.  +|++|+.||.|++||+.+++....  . .++..+. +|...|.++         +|  ++.+|++|+.||
T Consensus       342 ~~~--~~~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l---------~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          342 IRF--DNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRL---------QF--DEFQIVSSSHDD  405 (435)
T ss_dssp             EEC--CSS--EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCE---------EE--CSSCEEECCSSS
T ss_pred             EEe--cCC--EEEEEeCCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEE---------Ee--CCCEEEEEeCCC
Confidence            999  566  889999999999999987652110  0 1245554 899999999         77  788899999999


Q ss_pred             eEEEEeccCC
Q 016457          352 RLCCWLSDDS  361 (389)
Q Consensus       352 ~v~iW~~~~~  361 (389)
                      .|++|++...
T Consensus       406 ~i~iwd~~~~  415 (435)
T 1p22_A          406 TILIWDFLND  415 (435)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEECCCC
Confidence            9999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2e-39  Score=313.87  Aligned_cols=273  Identities=12%  Similarity=0.133  Sum_probs=240.9

Q ss_pred             CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQI   86 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i   86 (389)
                      +.+..++++.+|.|++|+..  ..+..+.+ ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus        24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~  103 (814)
T 3mkq_A           24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (814)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence            44567888999999999975  46667776 8899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           87 SFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        87 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      +|+|++  .+|++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.||.|++||++++.....+..
T Consensus       104 ~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  181 (814)
T 3mkq_A          104 AVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT  181 (814)
T ss_dssp             EECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred             EEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence            999999  79999999999999999987 77788899999999999999 677888888899999999998888888774


Q ss_pred             cccCCeeEEEEec--CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEE
Q 016457          165 SHVEDVTQVHFVP--NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       165 ~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~  242 (389)
                      .+...+.+++|+|  ++. .+++++.||.|++||++++    ..+..+..|...|.+++|+ +++.++++++.||.|++|
T Consensus       182 ~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~v~vw  255 (814)
T 3mkq_A          182 GQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIW  255 (814)
T ss_dssp             CCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCeEEEE
Confidence            4558999999999  885 9999999999999999854    4566777889999999999 788899999999999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      |+.+++.+..+..            |...+.+++|+|++..+++++++ ++.+.+|++...
T Consensus       256 d~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  303 (814)
T 3mkq_A          256 NSSTYKVEKTLNV------------GLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND  303 (814)
T ss_dssp             ETTTCSEEEEECC------------SSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCC
T ss_pred             ECCCCcEEEEeec------------CCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCC
Confidence            9999999888876            55899999999998865566665 566888887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.7e-39  Score=286.48  Aligned_cols=269  Identities=17%  Similarity=0.262  Sum_probs=231.3

Q ss_pred             ccccCCCCeEEEEecC--ceeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           14 SQSCDNVNSIKRFGLK--NSIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ..+++.++.|++|+..  .....+..  ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus       106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  185 (401)
T 4aez_A          106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN  185 (401)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred             EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence            5567789999999986  34444443  7889999999999999999999999999999999999999999999999994


Q ss_pred             CCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                        +  ++|++++.||.|++||++ ....+..+..|...|.+++|+|++..+++++.|+.|++||+++++.+..+. .|..
T Consensus       186 --~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~  260 (401)
T 4aez_A          186 --R--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNA  260 (401)
T ss_dssp             --T--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSS
T ss_pred             --C--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcc
Confidence              3  599999999999999998 567788999999999999999999999999999999999999999998887 8999


Q ss_pred             CeeEEEEecCCCCeEEEEe--CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe--cCCcEEEEEc
Q 016457          169 DVTQVHFVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT--HIETLSIWDW  244 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~  244 (389)
                      .|.+++|+|++..++++++  .|+.|++||++++.    .+. ...+...+.+++|+ +++.++++++  .|+.|++||+
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~-~~~~~~~v~~~~~s-~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVN-TVDAGSQVTSLIWS-PHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEE-EEECSSCEEEEEEC-SSSSEEEEEECTTTCEEEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEE-EEeCCCcEEEEEEC-CCCCeEEEEeecCCCcEEEEec
Confidence            9999999998876788766  79999999999542    333 33577889999999 6778888854  8999999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+++.........          |...|.+++|+|+++  +|++++.||.|++|++.+++.
T Consensus       335 ~~~~~~~~~~~~~----------h~~~v~~~~~s~dg~--~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          335 SSSGLTKQVDIPA----------HDTRVLYSALSPDGR--ILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             ETTEEEEEEEEEC----------CSSCCCEEEECTTSS--EEEEECTTSEEEEEECCC---
T ss_pred             CCccceeEEEecC----------CCCCEEEEEECCCCC--EEEEEeCCCcEEEEECCCCcc
Confidence            9876655533211          778999999999999  899999999999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.1e-40  Score=285.79  Aligned_cols=286  Identities=11%  Similarity=0.035  Sum_probs=242.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce---eeeeecCCCCcEEEEEEeCCCCCC-EEEEEecCCeEEEEEc-c
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---YSGECKGHSSTVNQISFSGPSTPH-VLHSCSSDGTIRAWDT-R  112 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~iwd~-~  112 (389)
                      .+.|++++|+|++++|++++.|+.|++|++.+++   ....+.+|...|.+++|+|++  . +|++|+.||.|++||+ .
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--DLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--SEEEEEEETTSCEEEECSSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC--CcEEEEEcCCCeEEEEEecc
Confidence            7889999999999999999999999999998776   344556799999999999998  8 9999999999999999 7


Q ss_pred             CCeEEEEEEc--CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC---------CceeeeeeecccCCeeEEEEecCCCC
Q 016457          113 SFHEVWSVTA--GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN---------KKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       113 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      +++. ..+..  |...|.+++|+| +..+++++.|+.|++||+++         ++++..+.  |...+.+++|+|++  
T Consensus        89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--  162 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--
T ss_pred             CCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--
Confidence            7655 67788  999999999999 99999999999999999998         77777775  88999999999874  


Q ss_pred             eEEEEeCCCcEEEEecCC-CCCCCccceeeeccCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCC------ceeEEe
Q 016457          182 KVVSASVDGLICTFDTGG-DINDDDLLESVINVGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDG------QNVASF  253 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~  253 (389)
                       +++++.|+.|++||+++ ..  .........+...+.+++|+ + ++.++++++.||.|++|++...      +....+
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             -EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence             99999999999999995 32  11233445678899999999 6 7889999999999999999877      777777


Q ss_pred             ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-ceeeeeccCCCcc
Q 016457          254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-TAVVRSVLPMPSV  332 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~  332 (389)
                      ..+.....   ..+|...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +| ...|.++      
T Consensus       239 ~~~~~~~~---~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~------~~~~~-~~h~~~v~~~------  300 (342)
T 1yfq_A          239 RCHRLNLK---DTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWNLQTRKK------IKNFA-KFNEDSVVKI------  300 (342)
T ss_dssp             ECCCCCTT---CCSSCCCEEEEEECTTTC--CEEEEETTSCEEEEETTTTEE------EEECC-CCSSSEEEEE------
T ss_pred             eccccccc---ccccceeEEEEEEcCCCC--EEEEecCCceEEEEcCccHhH------hhhhh-cccCCCceEe------
Confidence            76432111   012445999999999998  889999999999999998776      56665 77 9999999      


Q ss_pred             cCCCCCCCceeEEEecCCCe-EEEEec
Q 016457          333 QGRPAQSHGIFGWTGGEDGR-LCCWLS  358 (389)
Q Consensus       333 ~~~~~s~~~~~l~s~~~dg~-v~iW~~  358 (389)
                         +  |++++|++|+.||. .+.|..
T Consensus       301 ---~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          301 ---A--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---E--ECSSEEEEEEECTHHHHCSSS
T ss_pred             ---c--CCCCeEEEEecCCcccccccc
Confidence               7  99999999999998 555553

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-40  Score=285.30  Aligned_cols=255  Identities=14%  Similarity=0.181  Sum_probs=204.9

Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEE
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQF  150 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  150 (389)
                      .+.+|.+.|++++|+|++  ++|++|+.|++|++||+.++.  .+..+.+|...|.+++|+|+  +..|++++.|+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g--~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYG--TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGG--CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCC--CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            456899999999999999  799999999999999998775  46789999999999999753  788999999999999


Q ss_pred             EECcCCc--eeeeeeecccCCeeEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          151 WDWRNKK--QVACLEESHVEDVTQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       151 wd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      ||+++++  .+..+. +|...|.+++|+|+  + .+|++|+.|+.|++||++... ..........|...+.+++|+|..
T Consensus        86 Wd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           86 WREENGTWEKSHEHA-GHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             ECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EECCCCcceEEEEcc-CCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEcccc
Confidence            9999874  556666 89999999999998  5 499999999999999998542 111123345678889999998531


Q ss_pred             ----------------CcEEEEEecCCcEEEEEcCCC---ceeEEeecccccccCCccCCCCCceeeecccCCC----Ce
Q 016457          227 ----------------NKHLWCLTHIETLSIWDWKDG---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEG----EN  283 (389)
Q Consensus       227 ----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~  283 (389)
                                      +.+|++++.|+.|++||++..   +.+..+.+            |...|.+++|+|++    . 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~------------h~~~V~~v~~sp~~~~~~~-  229 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA------------HSDWVRDVAWAPSIGLPTS-  229 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC------------CSSCEEEEECCCCSSCSCC-
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc------------CCCceEEEEecCCCCCCCc-
Confidence                            468999999999999999755   34445554            77999999999986    5 


Q ss_pred             EEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          284 LWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                       +|++|+.||.|++|++.+.....  .....+ .+|...|.++         +|+|++++|++|+.||.|++|+...
T Consensus       230 -~las~s~D~~v~iw~~~~~~~~~--~~~~~~-~~~~~~v~~v---------~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          230 -TIASCSQDGRVFIWTCDDASSNT--WSPKLL-HKFNDVVWHV---------SWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -EEEEEETTCEEEEEECSSTTCCC--CBCCEE-EECSSCEEEE---------EECTTTCCEEEEESSSCEEEEEECT
T ss_pred             -eEEEEcCCCeEEEEEccCccccc--hhhhhh-hcCCCcEEEE---------EEcCCCCEEEEEcCCCeEEEEEECC
Confidence             78999999999999998632100  001223 3788899999         9999999999999999999999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.2e-40  Score=287.96  Aligned_cols=303  Identities=11%  Similarity=0.088  Sum_probs=239.8

Q ss_pred             ceeeeeec-CcceEEEeecCC---CCeEEEEecCCeEEEEeCCC-ceee-eeecCCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           30 NSIQTNFG-DDYVFEIVPKND---WSLMAVSLSTNVVKLYSPVT-GQYS-GECKGHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~---~~~l~~~~~d~~i~iw~~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ..+..+.+ .+.|++++|+|+   |++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++  ++|++++.|
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d  107 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--SKVFTASCD  107 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--SEEEEEETT
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--CEEEEEcCC
Confidence            35556666 899999999999   59999999999999999987 5444 7788899999999999998  799999999


Q ss_pred             CeEEEEEccCCeEEEEEEcCCCCeEEEEE--eCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCC
Q 016457          104 GTIRAWDTRSFHEVWSVTAGSQEIFCFSF--GGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN  181 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  181 (389)
                      |.|++||+.+++.+. +..|...|.+++|  +|++..+++++.||.|++||+++++.+..+. . ...+.++.+.+.   
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-~~~~~~~~~~~~---  181 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-L-PERCYCADVIYP---  181 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-C-SSCEEEEEEETT---
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-c-CCCceEEEecCC---
Confidence            999999999988776 5568899999999  8888889999999999999999999998887 3 446777777753   


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC----cEEEEEecCCcEEEEEcCCC---ceeEEee
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN----KHLWCLTHIETLSIWDWKDG---QNVASFE  254 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~---~~~~~~~  254 (389)
                      .+++++.++.+.+||++..........  ..+...+..+++. .+.    ..+++++.|+.|++||+...   ..+..+.
T Consensus       182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          182 MAVVATAERGLIVYQLENQPSEFRRIE--SPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             EEEEEEGGGCEEEEECSSSCEEEEECC--CSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             eeEEEeCCCcEEEEEeccccchhhhcc--ccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence            788889999999999985421111111  1233445555554 222    23999999999999999887   5566666


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  334 (389)
                      .+...........|...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|...|.++        
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i~iwd~~~~~~------~~~~~-~~~~~v~~~--------  321 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHG--TLATVGSDGRFSFWDKDARTK------LKTSE-QLDQPISAC--------  321 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTC--CEEEEETTSCEEEEETTTTEE------EEECC-CCSSCEEEE--------
T ss_pred             eeecccccccccccccceEEEEEecCCC--EEEEEccCCeEEEEECCCCcE------EEEec-CCCCCceEE--------
Confidence            5432111111112334799999999998  889999999999999998776      56665 899999999        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       +|+|+|++|++|+.|+..+.|++-..
T Consensus       322 -~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          322 -CFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             -EECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             -EECCCCCeEEEEecccccccccccCC
Confidence             99999999999999987777766544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3e-39  Score=325.91  Aligned_cols=288  Identities=17%  Similarity=0.245  Sum_probs=255.4

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      .+.+ .+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++  ++|++++.||+|++||+.
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETT
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC--CEEEEEeCCCeEEEEECC
Confidence            3445 8899999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             CCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          113 SFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      +++.+..+..|...|.+++|+|+  ...+++++.|+.|++||+++++.+..+. +|...|++++|+|++. .+++++.||
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~-~l~s~s~dg  765 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDE-LLASCSADG  765 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTT-EEEEEESSS
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCC-EEEEEECCC
Confidence            99999999999999999999984  4467778889999999999999999998 8999999999999996 999999999


Q ss_pred             cEEEEecCCCCCCCccceee-------------eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccc
Q 016457          191 LICTFDTGGDINDDDLLESV-------------INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENAR  257 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  257 (389)
                      .|++||++++.    ....+             ......+.+++|+ +++..+++++ ++.+.+||+.++..+..+... 
T Consensus       766 ~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-  838 (1249)
T 3sfz_A          766 TLRLWDVRSAN----ERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-ADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-  838 (1249)
T ss_dssp             EEEEEEGGGTE----EEEEEECCCCC--------CCCCCBCCCCBC-TTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred             eEEEEeCCCCc----ccceecccccccccCCccccccceEEEEEEC-CCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence            99999998542    11111             1123478899999 7788888776 689999999999888777632 


Q ss_pred             ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCC
Q 016457          258 SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPA  337 (389)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  337 (389)
                                |...+.+++|+|++.  ++++++.||.|++|++.++..      +..+. +|...|.++         +|
T Consensus       839 ----------~~~~v~~~~~sp~~~--~l~~~~~dg~v~vwd~~~~~~------~~~~~-~h~~~v~~v---------~~  890 (1249)
T 3sfz_A          839 ----------HHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSRLK------VADCR-GHLSWVHGV---------MF  890 (1249)
T ss_dssp             ----------SSSCCCEEEECSSTT--EEEEECSSSCEEEEETTTTEE------EEEEC-CCSSCEEEE---------EE
T ss_pred             ----------CCCceEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCce------eeecC-CCccceEEE---------EE
Confidence                      778999999999999  889999999999999998765      55564 999999999         99


Q ss_pred             CCCceeEEEecCCCeEEEEeccC
Q 016457          338 QSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       338 s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      +|+|++|++++.||.|++|++..
T Consensus       891 spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          891 SPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CCCCCEEEEEeCCCeEEEEEccc
Confidence            99999999999999999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.5e-39  Score=303.53  Aligned_cols=277  Identities=16%  Similarity=0.183  Sum_probs=238.3

Q ss_pred             CCeEEEEecC------ceeeeeec-Ccc-eEEEeecC--CCCeEEEEecCCeEEEEeCCCc--------eeeeeecCCCC
Q 016457           20 VNSIKRFGLK------NSIQTNFG-DDY-VFEIVPKN--DWSLMAVSLSTNVVKLYSPVTG--------QYSGECKGHSS   81 (389)
Q Consensus        20 ~~~i~~w~~~------~~~~~~~~-~~~-v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~--------~~~~~~~~~~~   81 (389)
                      ++.|++|++.      +....+.+ .+. |++++|+|  ++++|++|+.||.|++||+.++        +....+..|..
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  117 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG  117 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence            7899999986      35666776 788 99999999  9999999999999999999754        67778888999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecC----CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCC
Q 016457           82 TVNQISFSGPSTPHVLHSCSSD----GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~  156 (389)
                      .|.+++|+|++  ++|++++.+    +.|.+||  .++.+..+..|...|.+++|+|++. .+++++.|+.|++||++++
T Consensus       118 ~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~  193 (615)
T 1pgu_A          118 PISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  193 (615)
T ss_dssp             CEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             cEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence            99999999999  799999987    6888888  6778889999999999999999987 6888888999999999999


Q ss_pred             ceeeeeeecccC---CeeEEEEecC-CCCeEEEEeCCCcEEEEecCCCCCCCccceee-e---ccCCceeeEEEecCCCc
Q 016457          157 KQVACLEESHVE---DVTQVHFVPN-NQNKVVSASVDGLICTFDTGGDINDDDLLESV-I---NVGTSVGKVGFFGETNK  228 (389)
Q Consensus       157 ~~~~~~~~~~~~---~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~  228 (389)
                      +.+..+. .|..   .|++++|+|+ +. +|++++.|+.|++||++++    ..+..+ .   .|...|.+++|+  ++.
T Consensus       194 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~v~~~~~~--~~~  265 (615)
T 1pgu_A          194 KFSASDR-THHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWL--DSQ  265 (615)
T ss_dssp             EEEEEEC-SSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEES--SSS
T ss_pred             ceeeeec-ccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCC----CEeEEecccccccCCceEEEEEc--CCC
Confidence            9999988 8888   9999999999 85 9999999999999999854    344444 4   788999999998  778


Q ss_pred             EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc
Q 016457          229 HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI  308 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~  308 (389)
                      +|++++.|+.|++||+.+++.+..+.....        .+...+..+.|. +++  ++++++.||.|++||+.+++.   
T Consensus       266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~--~l~~~~~~g~i~~~d~~~~~~---  331 (615)
T 1pgu_A          266 KFATVGADATIRVWDVTTSKCVQKWTLDKQ--------QLGNQQVGVVAT-GNG--RIISLSLDGTLNFYELGHDEV---  331 (615)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTT--------CGGGCEEEEEEE-ETT--EEEEEETTSCEEEEETTEEEE---
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCC--------cccCceeEEEeC-CCC--eEEEEECCCCEEEEECCCCcE---
Confidence            999999999999999999999888875320        023667788886 677  889999999999999988665   


Q ss_pred             CCCeEEEecccceeeeec
Q 016457          309 GPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       309 ~~~~~~~~~~h~~~v~~~  326 (389)
                         +..+. +|...|.++
T Consensus       332 ---~~~~~-~~~~~v~~~  345 (615)
T 1pgu_A          332 ---LKTIS-GHNKGITAL  345 (615)
T ss_dssp             ---EEEEC-CCSSCEEEE
T ss_pred             ---EEEEe-CCCCCEEEE
Confidence               45554 788888887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-39  Score=288.69  Aligned_cols=280  Identities=13%  Similarity=0.116  Sum_probs=235.7

Q ss_pred             CCccccCCCCeEEEEecCc--------eeeeeec-CcceEEEeecCC----C---CeEEEEecCCeEEEEeCCCcee---
Q 016457           12 PKSQSCDNVNSIKRFGLKN--------SIQTNFG-DDYVFEIVPKND----W---SLMAVSLSTNVVKLYSPVTGQY---   72 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~--------~~~~~~~-~~~v~~~~~~~~----~---~~l~~~~~d~~i~iw~~~~~~~---   72 (389)
                      ...++++.|+.|++|++..        .+..+.+ ...|.+++|+|+    +   ++|++++.|+.|++||+.+++.   
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~  106 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  106 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence            5678899999999999863        4666666 889999999999    9   9999999999999999998876   


Q ss_pred             --eeeecCC-----CCcEEEEEEe----CCCCCCE-EEEEecCCeEEEEEccC------CeEEE-----EEEc-------
Q 016457           73 --SGECKGH-----SSTVNQISFS----GPSTPHV-LHSCSSDGTIRAWDTRS------FHEVW-----SVTA-------  122 (389)
Q Consensus        73 --~~~~~~~-----~~~v~~i~~~----~~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~~-------  122 (389)
                        +..+..|     ...|.+++|+    |++  .+ |++++.||.|++||+.+      ++.+.     .+..       
T Consensus       107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (397)
T 1sq9_A          107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLL--SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT  184 (397)
T ss_dssp             EEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred             ccceeecccccccCCCcEEEEEEeeccCCCC--ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccC
Confidence              7888888     5899999999    888  68 99999999999999998      66655     6743       


Q ss_pred             CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec---c---cCCeeEEEEecCCCCeEEEEeCC---CcEE
Q 016457          123 GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES---H---VEDVTQVHFVPNNQNKVVSASVD---GLIC  193 (389)
Q Consensus       123 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---~~i~  193 (389)
                      |...|.+++|+|++ .+++++.|+.|++||+++++.+..+. .   |   ...|.+++|+|++. +|++++.|   +.|+
T Consensus       185 ~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          185 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCIT  261 (397)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEE
T ss_pred             CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCccceEEECCCCC-EEEEEecCCCCceEE
Confidence            78899999999999 88888889999999999999998888 7   8   99999999999995 99999999   9999


Q ss_pred             EEecCCCCCCCccceeeec-------------cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee------
Q 016457          194 TFDTGGDINDDDLLESVIN-------------VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE------  254 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------  254 (389)
                      +||++++    ..+..+..             |...|.+++|+ +++.+|++++.|+.|++||+.+++.+..+.      
T Consensus       262 i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  336 (397)
T 1sq9_A          262 LYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  336 (397)
T ss_dssp             EEETTTC----CEEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             EEECCCC----cccceeccCcccccccccccccCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence            9999854    45566666             88999999999 788899999999999999999999998887      


Q ss_pred             cccccc---cCCccCCCCCceeeecccCCC----------CeEEEEEecCCceEEEEEeccC
Q 016457          255 NARSLA---SDSWTLDDVDYFVDCHYPGEG----------ENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       255 ~~~~~~---~~~~~~~~~~~i~~~~~~~~~----------~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .+....   .......|...|.+++|+|++          +  +|++|+.||.|++|++.++
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE--SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC--EEEEEETTTEEEEEEEEC-
T ss_pred             cchhhhhccccccccccCCceeEEEeccccccccccccccc--eEEEecCCCcEEEEEcCCC
Confidence            320000   000000127899999999998          5  7899999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.3e-39  Score=304.53  Aligned_cols=276  Identities=19%  Similarity=0.277  Sum_probs=225.9

Q ss_pred             CccccCCCCeEEEEecCc-------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           13 KSQSCDNVNSIKRFGLKN-------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      ..++++.|++|++|++..       ....+.+ ...|.+++|+|++++|++|+.|++|+|||+.+++....+.+|...|.
T Consensus       397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~  476 (694)
T 3dm0_A          397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL  476 (694)
T ss_dssp             EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE
Confidence            578999999999999853       3445666 88999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE---EcCCCCeEEEEEeCCC--CeEEEeecCCeEEEEECcCCcee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV---TAGSQEIFCFSFGGST--DYLLAAGCGSQIQFWDWRNKKQV  159 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~  159 (389)
                      +++|+|++  .+|++|+.|++|++||+.........   .+|...|.+++|+|++  ..+++++.|+.|++||+++++..
T Consensus       477 ~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          477 SVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            99999999  79999999999999998754433322   3577889999999876  56888889999999999999999


Q ss_pred             eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcE
Q 016457          160 ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETL  239 (389)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i  239 (389)
                      ..+. +|...|++++|+|++. +|++++.||.|++||++++.    .+.. ..+...+.+++|+ +++.+++++ .++.|
T Consensus       555 ~~~~-~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~----~~~~-~~~~~~v~~~~~s-p~~~~l~~~-~~~~i  625 (694)
T 3dm0_A          555 STLA-GHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGK----KLYS-LEANSVIHALCFS-PNRYWLCAA-TEHGI  625 (694)
T ss_dssp             EEEC-CCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTE----EEEC-CBCSSCEEEEEEC-SSSSEEEEE-ETTEE
T ss_pred             EEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----eEEE-ecCCCcEEEEEEc-CCCcEEEEE-cCCCE
Confidence            8888 8999999999999995 99999999999999999652    2322 2356689999999 666666555 56679


Q ss_pred             EEEEcCCCceeEEeecccccccC-------CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          240 SIWDWKDGQNVASFENARSLASD-------SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       240 ~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++||+++++.+..+.........       .....+...+.+++|+|+|+  +|++|+.||.|++|++.
T Consensus       626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~--~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS--TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS--EEEEEETTSEEEEEEC-
T ss_pred             EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC--EEEEEcCCCeEEEEecc
Confidence            99999999888777532111000       00011223578899999999  89999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-39  Score=285.92  Aligned_cols=270  Identities=16%  Similarity=0.256  Sum_probs=228.8

Q ss_pred             ccccCCCCeEEEEecC--ceeeeeec------CcceEEEeecCC----CCeEEEEecCCeEEEEeCCCceeeeeecCCCC
Q 016457           14 SQSCDNVNSIKRFGLK--NSIQTNFG------DDYVFEIVPKND----WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS   81 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~--~~~~~~~~------~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~   81 (389)
                      ...++.++.|++|+..  +.+..+..      ...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|..
T Consensus        37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  116 (366)
T 3k26_A           37 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN  116 (366)
T ss_dssp             EEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred             EEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence            4455567799999986  34444432      477999999999    67999999999999999999999999999999


Q ss_pred             cEEEEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEE---EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           82 TVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSV---TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        82 ~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      .|.+++|+| ++  .+|++++.||.|++||+++++.+..+   ..|...|.+++|+|++..+++++.||.|++||+++++
T Consensus       117 ~i~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          117 AINELKFHPRDP--NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             CEEEEEECSSCT--TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred             cEEEEEECCCCC--CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence            999999999 77  79999999999999999999999888   6789999999999999999999999999999999876


Q ss_pred             eeeeee---------------------------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC-------
Q 016457          158 QVACLE---------------------------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND-------  203 (389)
Q Consensus       158 ~~~~~~---------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------  203 (389)
                      .+..+.                           ..|...|.+++|+  + .++++++.|+.|++||+++....       
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  271 (366)
T 3k26_A          195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPS  271 (366)
T ss_dssp             HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred             cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccC
Confidence            554433                           1288999999999  4 49999999999999999865321       


Q ss_pred             ---CccceeeeccCCceeeEEEecCC--CcEEEEEecCCcEEEEEcCCCcee----EEeecccccccCCccCCCCCceee
Q 016457          204 ---DDLLESVINVGTSVGKVGFFGET--NKHLWCLTHIETLSIWDWKDGQNV----ASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       204 ---~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                         ...+..+..|...|.+++|+ ++  +.+|++++.||.|++||+.+++..    ..+..+.          |...|.+
T Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------~~~~v~~  340 (366)
T 3k26_A          272 ESNVTILGRFDYSQCDIWYMRFS-MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK----------CGAAIRQ  340 (366)
T ss_dssp             CCCEEEEEEEECSSCCSSCCCCE-ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT----------CCSCEEE
T ss_pred             CcchheeccccccCCcEEEEEEc-CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc----------cCCceEE
Confidence               12355666788899999999 56  889999999999999999987543    3555432          4689999


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEec
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++|+|+++  +|++++.||.|++||+.
T Consensus       341 ~~~s~~~~--~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          341 TSFSRDSS--ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECTTSS--EEEEEETTSEEEEEEC-
T ss_pred             EEeCCCCC--eEEEEeCCCEEEEEEec
Confidence            99999999  89999999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.6e-38  Score=284.07  Aligned_cols=278  Identities=18%  Similarity=0.307  Sum_probs=241.6

Q ss_pred             eeeeec-Ccc-eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           32 IQTNFG-DDY-VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        32 ~~~~~~-~~~-v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ...+.+ .+. +.++++  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +  +++++|+.||+|++|
T Consensus       111 ~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D--NIIISGSTDRTLKVW  184 (445)
T ss_dssp             CEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T--TEEEEEETTSCEEEE
T ss_pred             eEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C--CEEEEEeCCCeEEEE
Confidence            445666 444 565554  68899999999999999999999999999999999999998  3  599999999999999


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      |+.+++.+..+.+|...|.+++|+  ++.+++++.||.|++||+++++.+..+. +|...|.++++  ++ ..+++++.|
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~-~~l~~~~~d  258 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DG-RRVVSGAYD  258 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CS-SCEEEEETT
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CC-CEEEEEcCC
Confidence            999999999999999999999996  5789999999999999999999999998 89999999999  45 489999999


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          190 GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      |.|++||++++    ..+..+..|...|.++.|   ++.++++++.|+.|++||+.+++.+..+..            |.
T Consensus       259 g~i~iwd~~~~----~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~  319 (445)
T 2ovr_B          259 FMVKVWDPETE----TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTG------------HQ  319 (445)
T ss_dssp             SCEEEEEGGGT----EEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECC------------CC
T ss_pred             CEEEEEECCCC----cEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcC------------Cc
Confidence            99999999854    556677788899999998   467899999999999999999999988876            55


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec--ccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG--GHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ..+.++.++  ++  ++++|+.||.|++||+.+++.      +..+..  .|...|.++         +|+  +.+|++|
T Consensus       320 ~~v~~~~~~--~~--~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~~---------~~~--~~~l~s~  378 (445)
T 2ovr_B          320 SLTSGMELK--DN--ILVSGNADSTVKIWDIKTGQC------LQTLQGPNKHQSAVTCL---------QFN--KNFVITS  378 (445)
T ss_dssp             SCEEEEEEE--TT--EEEEEETTSCEEEEETTTCCE------EEEECSTTSCSSCEEEE---------EEC--SSEEEEE
T ss_pred             ccEEEEEEe--CC--EEEEEeCCCeEEEEECCCCcE------EEEEccCCCCCCCEEEE---------EEC--CCEEEEE
Confidence            778877775  45  889999999999999988765      555541  278889999         774  5789999


Q ss_pred             cCCCeEEEEeccCC
Q 016457          348 GEDGRLCCWLSDDS  361 (389)
Q Consensus       348 ~~dg~v~iW~~~~~  361 (389)
                      +.||.|++|++...
T Consensus       379 ~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          379 SDDGTVKLWDLKTG  392 (445)
T ss_dssp             ETTSEEEEEETTTC
T ss_pred             eCCCeEEEEECCCC
Confidence            99999999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.7e-39  Score=280.76  Aligned_cols=293  Identities=13%  Similarity=0.171  Sum_probs=220.0

Q ss_pred             eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeC--CCCCCEEEEEecCCeEE
Q 016457           35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSG--PSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~~~l~s~~~dg~i~  107 (389)
                      +.+ .+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|  ++  .+|++++.||.|+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~--~~l~s~~~dg~v~   84 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG--RIIASASYDKTVK   84 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC--SEEEEEETTSCEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC--CEEEEEcCCCeEE
Confidence            344 789999999999999999999999999999876    46677789999999999999  46  7999999999999


Q ss_pred             EEEccCC---------eEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCceeeeee------------e
Q 016457          108 AWDTRSF---------HEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQVACLE------------E  164 (389)
Q Consensus       108 iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------~  164 (389)
                      +||+.++         +.+..+..|...|.+++|+|+  +..+++++.||.|++||+++++.+..+.            .
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999877         668888899999999999998  8899999999999999999887654433            1


Q ss_pred             cccCCeeEEEEecC---CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC----cEEEEEecCC
Q 016457          165 SHVEDVTQVHFVPN---NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN----KHLWCLTHIE  237 (389)
Q Consensus       165 ~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~  237 (389)
                      .|...+.+++|+|+   + ..+++++.++.+.+|+...+  ....+..+..|...|.+++|+ +++    .+|++++.|+
T Consensus       165 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             SCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTS
T ss_pred             CcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCC
Confidence            57788999999997   6 49999999999988877743  122355666789999999999 555    7999999999


Q ss_pred             cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe----cCCceEEEEEeccCCccccCCCeE
Q 016457          238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG----TGAGTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g----~~dg~i~i~~~~~~~~~~~~~~~~  313 (389)
                      .|++||++.+........            +..........+...  ++..+    .....+.+|+....+.      +.
T Consensus       241 ~i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~  300 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEE------------SLTNSNMFDNSADVD--MDAQGRSDSNTEEKAELQSNLQVEL------LS  300 (351)
T ss_dssp             CEEEEEEEECC-----------------------------------------------------CCSEEEEE------EE
T ss_pred             eEEEEeCCCCcCccccCC------------cccceeccCCCcccc--cccccccccccceeeeecccccccE------EE
Confidence            999999987655443332            112222333333322  22333    2334455555554443      45


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~  363 (389)
                      .+. +|...|+++         +|+|++++|++|+.||.|++|++....+
T Consensus       301 ~~~-~h~~~v~~~---------~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          301 EHD-DHNGEVWSV---------SWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEC-TTSSCEEEE---------EECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             EEe-cccccEEEE---------EEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            554 899999999         9999999999999999999999987543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-39  Score=280.00  Aligned_cols=247  Identities=15%  Similarity=0.195  Sum_probs=205.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCC--CCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGP--STPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      .+.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+.+|...|.+++|+++  +  ++|++|+.|++|++||+++
T Consensus        13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~--~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG--NILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS--SCEEEEETTSCEEEECCSS
T ss_pred             cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC--CEEEEEECCCEEEEEECCC
Confidence            7899999999999999999999999999998764  46788999999999999864  5  6999999999999999998


Q ss_pred             C--eEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCce---eeeeeecccCCeeEEEEecCC-------
Q 016457          114 F--HEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQ---VACLEESHVEDVTQVHFVPNN-------  179 (389)
Q Consensus       114 ~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-------  179 (389)
                      +  +....+.+|...|.+++|+|+  +..+++++.|+.|++||++.+..   ...+. +|...+.+++|+|+.       
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~  169 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVVPGSLID  169 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCCC-----
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccCCccccc
Confidence            7  466778889999999999997  66888888999999999987632   33444 789999999999973       


Q ss_pred             ---------CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC---CcEEEEEecCCcEEEEEcCCC
Q 016457          180 ---------QNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET---NKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       180 ---------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~  247 (389)
                               ..+|++|+.|+.|++||++... .......+..|...|.+++|+|..   +.+|++++.|++|++|++.+.
T Consensus       170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~  248 (316)
T 3bg1_A          170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA  248 (316)
T ss_dssp             -CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred             cccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence                     1389999999999999997431 113445667899999999999432   378999999999999998763


Q ss_pred             c----eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          248 Q----NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       248 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      .    ....+..            |...|.+++|+|+++  +|++++.||.|++|+...
T Consensus       249 ~~~~~~~~~~~~------------~~~~v~~v~~sp~g~--~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          249 SSNTWSPKLLHK------------FNDVVWHVSWSITAN--ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TCCCCBCCEEEE------------CSSCEEEEEECTTTC--CEEEEESSSCEEEEEECT
T ss_pred             cccchhhhhhhc------------CCCcEEEEEEcCCCC--EEEEEcCCCeEEEEEECC
Confidence            1    1222332            668999999999999  889999999999999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=280.85  Aligned_cols=256  Identities=16%  Similarity=0.253  Sum_probs=219.0

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC--CceeeeeecCCCCcEEEEEEeCC--CCCCEEEEEecCCe
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV--TGQYSGECKGHSSTVNQISFSGP--STPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~dg~  105 (389)
                      .+..+.+ .+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...|.+++|+++  +  .+|++++.||.
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~   80 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TILASCSYDGK   80 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--SEEEEEETTSC
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC--CEEEEeccCCE
Confidence            3455666 8899999999999999999999999999998  56778889999999999999977  6  79999999999


Q ss_pred             EEEEEccCCe--EEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEec--
Q 016457          106 IRAWDTRSFH--EVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVP--  177 (389)
Q Consensus       106 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~--  177 (389)
                      |++||+.+++  .+..+..|...|.+++|+|+  +..+++++.|+.|++||+++...  ...+. .|...|.+++|+|  
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCcc
Confidence            9999999987  77788889999999999998  88999999999999999998743  34454 7999999999999  


Q ss_pred             -----------CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC---CcEEEEEecCCcEEEEE
Q 016457          178 -----------NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET---NKHLWCLTHIETLSIWD  243 (389)
Q Consensus       178 -----------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~d~~i~i~d  243 (389)
                                 ++ .+|++++.|+.|++||++++.........+..|...|.+++|+ ++   +.+|++++.|+.|++||
T Consensus       160 ~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          160 IEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC-CCCCCCCeEEEEeCCCEEEEEe
Confidence                       46 4999999999999999986543344556677889999999999 55   89999999999999999


Q ss_pred             cCCCce---eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          244 WKDGQN---VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       244 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +.++..   ...+...          .|...+.+++|+|+++  +|++++.||.|++|++...
T Consensus       238 ~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~--~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEE----------KFPDVLWRASWSLSGN--VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ESSTTSCCEEEESSSS----------CCSSCEEEEEECSSSC--CEEEEESSSSEEEEEEEET
T ss_pred             CCCCCccceeeeeccc----------cCCCcEEEEEEcCCCC--EEEEecCCCcEEEEeCCCC
Confidence            988642   2222221          1668899999999999  8899999999999999854

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-38  Score=272.60  Aligned_cols=276  Identities=18%  Similarity=0.272  Sum_probs=229.8

Q ss_pred             CccccCCCCeEEEEecCc-------eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEE
Q 016457           13 KSQSCDNVNSIKRFGLKN-------SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVN   84 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~   84 (389)
                      ..+|++.|++|++|++..       +...+.+ ...|.+++|+|++++|++|+.|+.|++|+............+...+.
T Consensus        53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  132 (340)
T 4aow_A           53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL  132 (340)
T ss_dssp             EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee
Confidence            578999999999999852       4556666 88999999999999999999999999999999988888888899999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE-EEEEcCCCCeEEEEEeCCC--CeEEEeecCCeEEEEECcCCceeee
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV-WSVTAGSQEIFCFSFGGST--DYLLAAGCGSQIQFWDWRNKKQVAC  161 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~  161 (389)
                      .+.+++++  .+|++++.|+.+++||+...... .....|...+.+++|++++  ..+++++.|+.|++||+++++.+..
T Consensus       133 ~~~~~~~~--~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          133 SVAFSSDN--RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEeecC--ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            99999998  79999999999999999765543 3445678899999998764  3566777899999999999999999


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      +. +|...|++++|+|++. +|++|+.|+.|++||+++.    ..+.. ..+...+..++|+ +++ .+++++.|+.|++
T Consensus       211 ~~-~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~----~~~~~-~~~~~~v~~~~~~-~~~-~~~~~~~d~~i~i  281 (340)
T 4aow_A          211 HI-GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEG----KHLYT-LDGGDIINALCFS-PNR-YWLCAATGPSIKI  281 (340)
T ss_dssp             EC-CCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT----EEEEE-EECSSCEEEEEEC-SSS-SEEEEEETTEEEE
T ss_pred             ec-CCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccC----ceeee-ecCCceEEeeecC-CCC-ceeeccCCCEEEE
Confidence            88 8999999999999996 9999999999999999954    33333 3456789999998 555 4667778999999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      ||++++..+..+.......   ....|...|.+++|+|+++  +|++|+.||.|+|||+.+|.
T Consensus       282 wd~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~s~dg~--~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          282 WDLEGKIIVDELKQEVIST---SSKAEPPQCTSLAWSADGQ--TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTTTEEEEEECCC----------CCCCCEEEEEECTTSS--EEEEEETTSCEEEEEEEC--
T ss_pred             EECCCCeEEEeccccceee---eccCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEeCCCcC
Confidence            9999888877765422111   1113778999999999999  89999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-37  Score=277.74  Aligned_cols=262  Identities=19%  Similarity=0.241  Sum_probs=224.2

Q ss_pred             CCCeEEEEecC--ceeeeee--c-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCC
Q 016457           19 NVNSIKRFGLK--NSIQTNF--G-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPST   93 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~   93 (389)
                      .|++|++||..  +....+.  + ...|++++|+|+|++||+|+.||.|+|||+++++.+..+.+|...+.++.++  + 
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~-  199 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S-  199 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T-
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C-
Confidence            48999999986  3455444  3 6789999999999999999999999999999999999999999999999886  3 


Q ss_pred             CCEEEEEecCCeEEEEEccC-CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce----eeeeeecccC
Q 016457           94 PHVLHSCSSDGTIRAWDTRS-FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ----VACLEESHVE  168 (389)
Q Consensus        94 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~  168 (389)
                       .+|++|+.|+.+++||... ...+..+.+|...+..+.++|.+..+++++.|+.|++||..+++.    +.... .|..
T Consensus       200 -~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~  277 (420)
T 4gga_A          200 -YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQG  277 (420)
T ss_dssp             -TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSS
T ss_pred             -CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCC
Confidence             5899999999999999886 456778899999999999999999999999999999999987653    34444 7889


Q ss_pred             CeeEEEEecCCCCeEEEE--eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe--cCCcEEEEEc
Q 016457          169 DVTQVHFVPNNQNKVVSA--SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT--HIETLSIWDW  244 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d~  244 (389)
                      .|.+++|+|.+.++++++  +.|+.|++||++++.    .. ....+...+.++.|+ +++..+++++  .|+.|++||+
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~-~~~~~~~~v~~~~~~-~~~~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CL-SAVDAHSQVCSILWS-PHYKELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EE-EEEECSSCEEEEEEE-TTTTEEEEEECTTTCCEEEEET
T ss_pred             ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cc-eeeccccceeeeeec-CCCCeEEEEEecCCCEEEEEEC
Confidence            999999999987777764  479999999999652    33 334456788999999 5556666554  6899999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+++++..+.+            |...|.+++|+|+|+  +|++|+.||+|+|||+.....
T Consensus       352 ~~~~~v~~l~g------------H~~~V~~l~~spdg~--~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          352 PTMAKVAELKG------------HTSRVLSLTMSPDGA--TVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             TTCCEEEEECC------------CSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCSSC
T ss_pred             CCCcEEEEEcC------------CCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCCCc
Confidence            99999999987            779999999999999  889999999999999976543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-38  Score=277.76  Aligned_cols=258  Identities=14%  Similarity=0.223  Sum_probs=217.0

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc--CCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecC
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR--SFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCG  145 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  145 (389)
                      |+++..+.+|...|++++|+|++  ++|++|+.||.|++||+.  +++.+..+..|...|++++|+|+  +..+++++.|
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCccEEecCCcccEEEEEEcCCC--CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            45677889999999999999999  799999999999999998  66778889999999999999877  8899999999


Q ss_pred             CeEEEEECcCCc--eeeeeeecccCCeeEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEE
Q 016457          146 SQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVG  221 (389)
Q Consensus       146 ~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  221 (389)
                      |.|++||+++++  .+..+. .|...|.+++|+|+  +. +|++++.|+.|++||+++..  ......+..|...|.+++
T Consensus        79 g~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTS--CCCEEEEECCTTCEEEEE
T ss_pred             CEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCC--ceeeEEecCCCCceEEEE
Confidence            999999999887  666666 79999999999999  74 99999999999999999642  233445667889999999


Q ss_pred             EecC------------CCcEEEEEecCCcEEEEEcCCCcee----EEeecccccccCCccCCCCCceeeecccCC---CC
Q 016457          222 FFGE------------TNKHLWCLTHIETLSIWDWKDGQNV----ASFENARSLASDSWTLDDVDYFVDCHYPGE---GE  282 (389)
Q Consensus       222 ~~~~------------~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  282 (389)
                      |+|.            ++.+|++++.|+.|++||++++...    ..+..            |...|.+++|+|+   ++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~~  222 (379)
T 3jrp_A          155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRS  222 (379)
T ss_dssp             ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSE
T ss_pred             EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec------------ccCcEeEEEECCCCCCCC
Confidence            9953            6889999999999999999876533    34443            7799999999999   66


Q ss_pred             eEEEEEecCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          283 NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       283 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                        +|++++.||.|++||+.++...    ....+.  ..|...|.++         +|+|++++|++++.||.|++|++..
T Consensus       223 --~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~---------~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          223 --YLASVSQDRTCIIWTQDNEQGP----WKKTLLKEEKFPDVLWRA---------SWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             --EEEEEETTSCEEEEEESSTTSC----CEEEESSSSCCSSCEEEE---------EECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             --eEEEEeCCCEEEEEeCCCCCcc----ceeeeeccccCCCcEEEE---------EEcCCCCEEEEecCCCcEEEEeCCC
Confidence              8899999999999999986420    012222  2377889999         9999999999999999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-37  Score=271.16  Aligned_cols=269  Identities=12%  Similarity=0.127  Sum_probs=236.9

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...++++.|+.|++|++.  +.+..+.+ ...|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  123 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEF  123 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEE
Confidence            357788899999999975  56677776 8899999999999999999999999999999999988888 8899999999


Q ss_pred             eCCCCCCEEEEEecC-----CeEEEEEccCCe-----------EEEEEEcCCC--CeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           89 SGPSTPHVLHSCSSD-----GTIRAWDTRSFH-----------EVWSVTAGSQ--EIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        89 ~~~~~~~~l~s~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      +|++  .++++++.+     +.|++||+....           .+..+..|..  .+.+++|+|++..+++++.||.|++
T Consensus       124 ~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          124 SPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             CTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             ccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence            9999  799999998     999999998653           3445556655  9999999999999999999999999


Q ss_pred             EECcC-CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcE
Q 016457          151 WDWRN-KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       151 wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (389)
                      ||+++ .+.+..+. .|...|.+++|+|++. +|++++.|+.|++||++++.    .+. ...+...+..++|+ +++.+
T Consensus       202 ~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~----~~~-~~~~~~~~~~~~~~-~~~~~  273 (369)
T 3zwl_B          202 YDVSNNYEYVDSID-LHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQ----VLK-KYETDCPLNTAVIT-PLKEF  273 (369)
T ss_dssp             EETTTTTEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC----EEE-EEECSSCEEEEEEC-SSSSE
T ss_pred             EECCCCcEeEEEEe-cCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCc----eee-eecCCCCceeEEec-CCCce
Confidence            99998 67777887 8999999999999995 99999999999999999542    333 33478899999999 78889


Q ss_pred             EEEEecCC--------------cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          230 LWCLTHIE--------------TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       230 l~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      +++++.++              .+++||..+++.+..+..            |...|.+++|+|+++  +|++++.||.|
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------~~~~v~~~~~s~~~~--~l~s~~~dg~v  339 (369)
T 3zwl_B          274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG------------HFGPLNTVAISPQGT--SYASGGEDGFI  339 (369)
T ss_dssp             EEEEECCC-------------CEEEEEETTTCCEEEEEEC------------CSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec------------ccCcEEEEEECCCCC--EEEEEcCCCeE
Confidence            99999888              899999999999998887            669999999999999  89999999999


Q ss_pred             EEEEeccCCc
Q 016457          296 GYFPVNYGGA  305 (389)
Q Consensus       296 ~i~~~~~~~~  305 (389)
                      ++|++..+..
T Consensus       340 ~iw~~~~~~~  349 (369)
T 3zwl_B          340 RLHHFEKSYF  349 (369)
T ss_dssp             EEEEECHHHH
T ss_pred             EEEECccccc
Confidence            9999987543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-38  Score=283.46  Aligned_cols=282  Identities=14%  Similarity=0.160  Sum_probs=231.6

Q ss_pred             eEEEeecCCCCeE-EEEecCCeEEEEeCCCc-e---eeeeecCCCCcEEEEEEeC-CCCCCEEEEEecCCeEEEEEccCC
Q 016457           41 VFEIVPKNDWSLM-AVSLSTNVVKLYSPVTG-Q---YSGECKGHSSTVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        41 v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~-~---~~~~~~~~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      ...++++|+...+ ++++.+|.|+||++... +   .+..+.+|...|.+++|+| ++  .+|++|+.||+|++||+.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--NVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--TEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--CEEEEEeCCCeEEEEEccCC
Confidence            4467888877444 45788999999998654 2   3456788999999999999 77  79999999999999999987


Q ss_pred             -------eEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeee--eecccCCeeEEEEecCCCCeEE
Q 016457          115 -------HEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACL--EESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       115 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                             +.+..+.+|...|.+++|+|++ ..+++++.|+.|++||+++++.+..+  . .|...|.+++|+|++. +|+
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~  192 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDGA-LIC  192 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTSS-CEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-CCCCceEEEEECCCCC-EEE
Confidence                   6688899999999999999997 57888888999999999999999888  5 7999999999999995 999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceee-eccCCc-eeeEEEecCCCcEEEEE---ecCCcEEEEEcCCCce-eEEeecccc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESV-INVGTS-VGKVGFFGETNKHLWCL---THIETLSIWDWKDGQN-VASFENARS  258 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~  258 (389)
                      +++.|+.|++||++++    ..+..+ ..|... +..++|+ +++.+|+++   +.|+.|++||+++++. +.....   
T Consensus       193 ~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~---  264 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL---  264 (402)
T ss_dssp             EEETTSEEEEEETTTT----EEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC---
T ss_pred             EEecCCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEec---
Confidence            9999999999999954    344555 456655 8999999 778889888   7899999999998764 333321   


Q ss_pred             cccCCccCCCCCceeeecccCCCCeEEE-EEecCCceEEEEEeccCCccccCCCeEEEecc--cceeeeeccCCCcccCC
Q 016457          259 LASDSWTLDDVDYFVDCHYPGEGENLWV-IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGG--HTAVVRSVLPMPSVQGR  335 (389)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~  335 (389)
                              .|...+..++|+|+++  +| ++|+.||.|++|++.+++.     .+..+. .  |...|.++         
T Consensus       265 --------~~~~~v~~~~~s~~~~--~l~~~g~~dg~i~i~d~~~~~~-----~~~~l~-~~~~~~~v~~~---------  319 (402)
T 2aq5_A          265 --------DTSSGVLLPFFDPDTN--IVYLCGKGDSSIRYFEITSEAP-----FLHYLS-MFSSKESQRGM---------  319 (402)
T ss_dssp             --------CCCSSCEEEEEETTTT--EEEEEETTCSCEEEEEECSSTT-----CEEEEE-EECCSSCCSEE---------
T ss_pred             --------cCCCceeEEEEcCCCC--EEEEEEcCCCeEEEEEecCCCc-----ceEeec-ccccCCcccce---------
Confidence                    1557899999999998  55 4677899999999998762     123333 3  45889999         


Q ss_pred             CCCCCceeEEEecCCCeEEEEeccCC
Q 016457          336 PAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       336 ~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +|+|++.++++  .|+.+++|++...
T Consensus       320 ~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          320 GYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             EECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             EEeccccccee--cceeEEEEEcCCC
Confidence            99999998875  4679999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=274.12  Aligned_cols=270  Identities=14%  Similarity=0.112  Sum_probs=219.7

Q ss_pred             cccCC---CCeEEEEecCc--eeee--eecCcceEEEeecCC---CCeEEEEecCCeEEEEeCCCce-eeeeecCCCCcE
Q 016457           15 QSCDN---VNSIKRFGLKN--SIQT--NFGDDYVFEIVPKND---WSLMAVSLSTNVVKLYSPVTGQ-YSGECKGHSSTV   83 (389)
Q Consensus        15 ~s~~~---~~~i~~w~~~~--~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~v   83 (389)
                      ++++.   |+.|++|++..  ....  ..+...|.+++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|...|
T Consensus        35 ~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  114 (357)
T 3i2n_A           35 TMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII  114 (357)
T ss_dssp             EEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCE
T ss_pred             EecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccce
Confidence            44554   89999999864  2222  223889999999998   6999999999999999999887 888999999999


Q ss_pred             EEEEE------eCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEEcCCC----CeEEEE----EeCCCCeEEEeecCCeE
Q 016457           84 NQISF------SGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVTAGSQ----EIFCFS----FGGSTDYLLAAGCGSQI  148 (389)
Q Consensus        84 ~~i~~------~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i  148 (389)
                      .+++|      +|++  .+|++++.||.|++||+.+++ .+..+..+..    .+.+++    |+|++..+++++.|+.|
T Consensus       115 ~~~~~~~~~~~s~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i  192 (357)
T 3i2n_A          115 NAIDGIGGLGIGEGA--PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI  192 (357)
T ss_dssp             EEEEEESGGGCC-CC--CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEE
T ss_pred             EEEeeccccccCCCc--cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeE
Confidence            99965      5667  799999999999999999886 6777776544    899998    67889999999999999


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEec---CCCCeEEEEeCCCcEEEEecCCCCCCCcc-ceeeeccCCceeeEEEec
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVP---NNQNKVVSASVDGLICTFDTGGDINDDDL-LESVINVGTSVGKVGFFG  224 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~  224 (389)
                      ++||+++++.....  .|...|.+++|+|   ++. .|++++.||.|++||++++...... ......|...|.+++|+ 
T Consensus       193 ~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  268 (357)
T 3i2n_A          193 KLFDLRNMALRWET--NIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-  268 (357)
T ss_dssp             EEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-
T ss_pred             EEEECccCceeeec--CCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-
Confidence            99999998876554  5889999999999   775 9999999999999999854311111 11233789999999999 


Q ss_pred             CCCc-EEEEEecCCcEEEEEcCCCc-------------------eeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          225 ETNK-HLWCLTHIETLSIWDWKDGQ-------------------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       225 ~~~~-~l~~~~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                      +++. +|++++.||.|++||++++.                   .+..+..            |...|.+++|+|+++  
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~--  334 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL------------STQPISSLDWSPDKR--  334 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC------------CSSCEEEEEECSSST--
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc------------CCCCeeEEEEcCCCC--
Confidence            5666 89999999999999998653                   3334443            778999999999998  


Q ss_pred             EEE-EecCCceEEEEEeccCC
Q 016457          285 WVI-GGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       285 ~l~-~g~~dg~i~i~~~~~~~  304 (389)
                      +|+ +++.||.|++|++.+.+
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC--
T ss_pred             eEEEEecCCCcEEEEECCCcc
Confidence            666 89999999999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=276.83  Aligned_cols=314  Identities=15%  Similarity=0.116  Sum_probs=223.2

Q ss_pred             CCCccccCCCCeEEEEecCc--eeeeee--------------cCcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceee
Q 016457           11 QPKSQSCDNVNSIKRFGLKN--SIQTNF--------------GDDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYS   73 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~~--~~~~~~--------------~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~   73 (389)
                      ....++++.|+.|++|++..  ....+.              +...|.+++|+| ++.+|++++.||.|++||+.+++..
T Consensus        56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence            34578899999999999863  222222              378899999999 7789999999999999999999888


Q ss_pred             eeecCCCCcEEEEEEeCCCC-CCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEE
Q 016457           74 GECKGHSSTVNQISFSGPST-PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFW  151 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iw  151 (389)
                      ..+. +...+.++.|++.+. ..++++++.|+.|++||+++++.+..+..|...|.+++|+|++.. +++++.||.|++|
T Consensus       136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~  214 (408)
T 4a11_B          136 DVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW  214 (408)
T ss_dssp             EEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             eecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEE
Confidence            8877 778899999998651 149999999999999999999999999999999999999999886 7778889999999


Q ss_pred             ECcCCc-eeeeee--------------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457          152 DWRNKK-QVACLE--------------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS  216 (389)
Q Consensus       152 d~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  216 (389)
                      |++++. .+..+.              ..|...|.+++|+|++. +|++++.||.|++||++++................
T Consensus       215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  293 (408)
T 4a11_B          215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK  293 (408)
T ss_dssp             ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred             ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence            998765 333331              26889999999999995 99999999999999999654221111111111111


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      .....+.......+++++.++.|++||+.+++.+..+.+            |...|.+++|+|+++  +|++|+.||.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------~~~~v~~~~~s~~~~--~l~s~~~dg~i~  359 (408)
T 4a11_B          294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG------------HYKTVDCCVFQSNFQ--ELYSGSRDCNIL  359 (408)
T ss_dssp             CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC------------CSSCEEEEEEETTTT--EEEEEETTSCEE
T ss_pred             cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc------------CCCeEEEEEEcCCCC--EEEEECCCCeEE
Confidence            222233324456778888999999999999999999886            669999999999999  899999999999


Q ss_pred             EEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC-CceeEEEecCCCeEEEEecc
Q 016457          297 YFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS-HGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       297 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~v~iW~~~  359 (389)
                      +|++.+++.      +.... .+. ....+           ++ ....+.+++.|+.+++|+..
T Consensus       360 iw~~~~~~~------~~~~~-~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          360 AWVPSLYEP------VPDDD-ETT-TKSQL-----------NPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEECC----------------------------------------------------------
T ss_pred             EEeCCCCCc------cCCCC-ceE-ecccc-----------ccccceeecccCccCceeecCCc
Confidence            999998765      22221 111 11111           11 22234677789999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-37  Score=273.84  Aligned_cols=264  Identities=14%  Similarity=0.154  Sum_probs=215.1

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeee--c-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecC---CCCc
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNF--G-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKG---HSST   82 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~--~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~   82 (389)
                      ...++++.|+.|++|++.  .....+.  + ...|.+++|+| ++.+|++++.|+.|++||+.+ +.+..+..   |...
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~  165 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYW  165 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCC
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCC
Confidence            467889999999999986  3444443  3 88999999999 779999999999999999985 44445543   4588


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcC----Cc
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRN----KK  157 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~----~~  157 (389)
                      |.+++|+|++  .+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|++. .+++++.|+.|++||+++    +.
T Consensus       166 v~~~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  242 (383)
T 3ei3_B          166 YCCVDVSVSR--QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS  242 (383)
T ss_dssp             EEEEEEETTT--TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred             eEEEEECCCC--CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence            9999999999  79999999999999999 5788899999999999999999998 788888899999999998    55


Q ss_pred             eeeeeeecccCCeeEEEEec-CCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-------CC----------ceee
Q 016457          158 QVACLEESHVEDVTQVHFVP-NNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-------GT----------SVGK  219 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~----------~i~~  219 (389)
                      .+..+  +|...|.+++|+| ++. +|++++.|+.|++||++++..    ...+..|       ..          .+..
T Consensus       243 ~~~~~--~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  315 (383)
T 3ei3_B          243 YIAEM--PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIV  315 (383)
T ss_dssp             EEEEE--ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred             eEEEe--cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEeccCCCCceE
Confidence            55555  4899999999999 885 999999999999999996532    2222222       22          2333


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ++++ +++++  +++.|+.|++||+.+++.+..+..+.          |...+..++|+|+++  +|++|+ ||.|++||
T Consensus       316 ~~~s-~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~----------~~~~~~~~~~s~~g~--~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          316 AGRY-PDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN----------AAGIISLNKFSPTGD--VLASGM-GFNILIWN  379 (383)
T ss_dssp             EECB-CCTTT--CTTCCCCEEEEETTTCCEEEEECBTT----------BCSCCCEEEECTTSS--EEEEEE-TTEEEEEE
T ss_pred             EEec-CCccc--ccCCCCeEEEEecCCCceeeeecCCC----------CCceEEEEEEecCcc--EEEEec-CCcEEEEe
Confidence            4555 34444  66789999999999999999988643          456677779999999  889996 99999999


Q ss_pred             ecc
Q 016457          300 VNY  302 (389)
Q Consensus       300 ~~~  302 (389)
                      +++
T Consensus       380 ~~~  382 (383)
T 3ei3_B          380 RED  382 (383)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-37  Score=276.02  Aligned_cols=273  Identities=12%  Similarity=0.140  Sum_probs=228.4

Q ss_pred             ccccCCCCeEEEEecCc------eeeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCc-------eeeeeecC
Q 016457           14 SQSCDNVNSIKRFGLKN------SIQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTG-------QYSGECKG   78 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~------~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~   78 (389)
                      .++++.+|.|++|++.+      .+..+.+ .+.|++++|+| ++.+|++|+.||.|++||+.++       +.+..+.+
T Consensus        50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence            34578899999999853      3344555 88999999999 8999999999999999999987       56788899


Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE--EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV--TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  156 (389)
                      |...|.+++|+|++. .+|++++.||.|++||+.+++.+..+  ..|...|.+++|+|++..+++++.|+.|++||++++
T Consensus       130 h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            999999999999973 59999999999999999999999999  789999999999999999999999999999999999


Q ss_pred             ceeeeeeecccCC-eeEEEEecCCCCeEEEE---eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE-
Q 016457          157 KQVACLEESHVED-VTQVHFVPNNQNKVVSA---SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW-  231 (389)
Q Consensus       157 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-  231 (389)
                      +.+..+...|... +.++.|+|++. +|++|   +.|+.|++||+++...  ........+...+..++|+ +++.+|+ 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s-~~~~~l~~  284 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE--PLSLQELDTSSGVLLPFFD-PDTNIVYL  284 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS--CSEEEECCCCSSCEEEEEE-TTTTEEEE
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC--CceEEeccCCCceeEEEEc-CCCCEEEE
Confidence            9988883267765 89999999985 88888   7899999999995431  1112223567789999999 6667775 


Q ss_pred             EEecCCcEEEEEcCCCce-eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          232 CLTHIETLSIWDWKDGQN-VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +++.|+.|++||+.+++. +..+....          |...+.+++|+|++.  ++++  .++.+++|++.++..
T Consensus       285 ~g~~dg~i~i~d~~~~~~~~~~l~~~~----------~~~~v~~~~~sp~~~--~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          285 CGKGDSSIRYFEITSEAPFLHYLSMFS----------SKESQRGMGYMPKRG--LEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EETTCSCEEEEEECSSTTCEEEEEEEC----------CSSCCSEEEECCGGG--SCGG--GTEEEEEEEEETTEE
T ss_pred             EEcCCCeEEEEEecCCCcceEeecccc----------cCCcccceEEecccc--ccee--cceeEEEEEcCCCcE
Confidence            555799999999998874 55555433          568899999999987  5554  567999999998654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-37  Score=273.16  Aligned_cols=281  Identities=9%  Similarity=0.055  Sum_probs=228.6

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee--ecCCCCcEE
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE--CKGHSSTVN   84 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~   84 (389)
                      ...++++.++.|++|++..    .+..+.+ ...|.+++|+|++++|++++.|+.|++||+.+++....  +..|...|.
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  100 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR  100 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee
Confidence            4577888999999999864    5666766 88999999999999999999999999999988865443  467999999


Q ss_pred             EEEEeCCCCCCEEEEEecCCeEEEEEccCCeE---EEEE-EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc------
Q 016457           85 QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE---VWSV-TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR------  154 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------  154 (389)
                      +++|+|++  .+|++++.|+.|++||++.+..   ...+ ..|...|.+++|+|++..+++++.|+.|++||++      
T Consensus       101 ~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C          101 CVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             EEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             EEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence            99999998  7999999999999999988762   3333 4578999999999999999999999999999954      


Q ss_pred             ------------CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEE
Q 016457          155 ------------NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF  222 (389)
Q Consensus       155 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (389)
                                  .++.+..+. .|...|.+++|+|++. +|++++.|+.|++||++++    ..+..+..|...|.+++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~  252 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTF  252 (372)
T ss_dssp             CCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEE
T ss_pred             cccccccccccchhhheEecC-CCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCC----ceeEEEccCCCCeEEEEE
Confidence                        567788887 7999999999999995 9999999999999999854    456777788889999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCC--Cc--eeEEeeccc-------------------cccc------CCccCCCCCcee
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKD--GQ--NVASFENAR-------------------SLAS------DSWTLDDVDYFV  273 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~--~~--~~~~~~~~~-------------------~~~~------~~~~~~~~~~i~  273 (389)
                      + +++.+++++ .|+.|++|++.+  ++  .+..+....                   ....      .....+|...|.
T Consensus       253 ~-~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  330 (372)
T 1k8k_C          253 I-TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS  330 (372)
T ss_dssp             E-ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred             e-cCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence            9 677777766 999999999987  42  111111000                   0000      111125889999


Q ss_pred             eeccc-CCC---CeEEEEEecCCceEEEEEeccCC
Q 016457          274 DCHYP-GEG---ENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       274 ~~~~~-~~~---~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +++|. ++|   .  +|++|+.||.|++|++.+++
T Consensus       331 ~~~~~~~~g~~~~--~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          331 QISVLSGGKAKCS--QFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEESTTTSCS--EEEEEETTSEEEEEEHHHHH
T ss_pred             eeEEecCCCccee--eEEEecCCCceEEEEecChh
Confidence            99966 665   7  89999999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-38  Score=286.41  Aligned_cols=271  Identities=11%  Similarity=0.026  Sum_probs=211.6

Q ss_pred             cCcceEEEeecCCC---------CeEEEE-------------------ecCCeEEEEeCCCceee----eeecCCCCcEE
Q 016457           37 GDDYVFEIVPKNDW---------SLMAVS-------------------LSTNVVKLYSPVTGQYS----GECKGHSSTVN   84 (389)
Q Consensus        37 ~~~~v~~~~~~~~~---------~~l~~~-------------------~~d~~i~iw~~~~~~~~----~~~~~~~~~v~   84 (389)
                      ..+.|.+|+|+|++         ++||+|                   +.|++|+||++.+++..    ..+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            36788899999876         567664                   46789999999877642    34567889999


Q ss_pred             EEEEeCCC----CCCEEEEEecCCeEEEEEccCCeE-----------EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457           85 QISFSGPS----TPHVLHSCSSDGTIRAWDTRSFHE-----------VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ  149 (389)
Q Consensus        85 ~i~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  149 (389)
                      +++|+|++    .+.+|++++.||+|++||+.++..           ...+.+|...|++++|+++ ..|++++.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            99999971    126999999999999999976531           2467888999999999964 5889999999999


Q ss_pred             EEECcCCc-eeeeeeecccCCeeEE--EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEec
Q 016457          150 FWDWRNKK-QVACLEESHVEDVTQV--HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFG  224 (389)
Q Consensus       150 iwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~  224 (389)
                      +||++++. +...+. +|...|++|  +|+|+++++|++++.|++|++||++++    .....+..|..  .|.+++|+ 
T Consensus       291 lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----~~~~~~~~~~~~~~v~~v~fs-  364 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----ATTKTTVSRFRGSNLVPVVYC-  364 (524)
T ss_dssp             EEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----HHHCEEEEECSCCSCCCEEEE-
T ss_pred             EEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----CcccccccccccCcccceEeC-
Confidence            99999774 445566 899999999  567776349999999999999999843    33344444543  57899999 


Q ss_pred             CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          225 ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      |+++.+++++.|++|++||++++.++..+.+            |...|.+++|+|+++  +|++|+.||+|++|++..+.
T Consensus       365 p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g------------H~~~V~sva~Sp~g~--~l~Sgs~Dgtv~lwd~~~~~  430 (524)
T 2j04_B          365 PQIYSYIYSDGASSLRAVPSRAAFAVHPLVS------------RETTITAIGVSRLHP--MVLAGSADGSLIITNAARRL  430 (524)
T ss_dssp             TTTTEEEEECSSSEEEEEETTCTTCCEEEEE------------CSSCEEEEECCSSCC--BCEEEETTTEEECCBSCSST
T ss_pred             CCcCeEEEeCCCCcEEEEECcccccceeeec------------CCCceEEEEeCCCCC--eEEEEECCCEEEEEechHhh
Confidence            6778899999999999999999988888876            779999999999999  88999999999999987542


Q ss_pred             ccccCCCeEEEec----ccceeeeeccCCCcccCCCCCCCceeE
Q 016457          305 AATIGPPEAVLVG----GHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       305 ~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                      .       .....    .+...|.++         +|+|++..+
T Consensus       431 ~-------~~~~~~~~~~~~~~v~~v---------~~sp~g~~~  458 (524)
T 2j04_B          431 L-------HGIKNSSATQKSLRLWKW---------DYSIKDDKY  458 (524)
T ss_dssp             T-------TCC------CCCCEEEEC---------BCCSSSCEE
T ss_pred             c-------cccccCccceeeeEEEEe---------ccCCCCCeE
Confidence            2       11110    112256777         999999854

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=296.14  Aligned_cols=259  Identities=16%  Similarity=0.213  Sum_probs=216.1

Q ss_pred             eeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCC--CceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           34 TNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV--TGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        34 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      .+.+ .+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...|.+++|+|+..+++|++|+.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            4555 8899999999999999999999999999998  567788899999999999999882127999999999999999


Q ss_pred             ccCCe--EEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEEEEECcCCc--eeeeeeecccCCeeEEEEecC------
Q 016457          111 TRSFH--EVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQFWDWRNKK--QVACLEESHVEDVTQVHFVPN------  178 (389)
Q Consensus       111 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~------  178 (389)
                      +.+++  .+..+..|...|++++|+|+  +..+++++.||.|++||++++.  ....+. +|...|.+++|+|.      
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC-----
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCccccccc
Confidence            99987  77788889999999999998  8899999999999999999873  334454 79999999999994      


Q ss_pred             -------CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC--CcEEEEEecCCcEEEEEcCCCce
Q 016457          179 -------NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET--NKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       179 -------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                             + ..+++|+.||.|++||++++.........+..|...|.+++|+|..  +.++++++.||.|++||+.++..
T Consensus       163 ~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          163 EHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             ----CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             ccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   6 4999999999999999996644345556677899999999999433  89999999999999999987642


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .......       ....|...+.+++|+|+++  ++++|+.||.|++|++..+
T Consensus       242 ~~~~~~~-------~~~~~~~~v~~l~~spdg~--~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          242 PWKKTLL-------KEEKFPDVLWRASWSLSGN--VLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CCBCCBS-------SSSCCSSCCCCEEECTTTC--CEEEECSSSCEECCBCCSS
T ss_pred             cceeEEe-------ccCCCCCceEEEEEcCCCC--EEEEEcCCCEEEEEecCCC
Confidence            2111100       0012678999999999999  8899999999999999854

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.6e-37  Score=275.31  Aligned_cols=298  Identities=15%  Similarity=0.173  Sum_probs=237.1

Q ss_pred             CcceEEEeecCCC----------CeEEEEec----CCeEEEEeCC--------------------------Ccee-eeee
Q 016457           38 DDYVFEIVPKNDW----------SLMAVSLS----TNVVKLYSPV--------------------------TGQY-SGEC   76 (389)
Q Consensus        38 ~~~v~~~~~~~~~----------~~l~~~~~----d~~i~iw~~~--------------------------~~~~-~~~~   76 (389)
                      .-+..++.|.|+.          .++++|+.    ...|.++++.                          +++. ....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  124 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK  124 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence            4566788888865          35777765    3467777542                          1111 2334


Q ss_pred             cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC----------CeEEEEEEcCCCCeEEEEEeCCCC-eEEEeecC
Q 016457           77 KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----------FHEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCG  145 (389)
Q Consensus        77 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  145 (389)
                      ..|.+.|++++|+|++. .+|++++.||.|++|++.+          ...+..+..|...|.+++|+|.+. .|++++.|
T Consensus       125 ~~h~~~v~~l~~~p~~~-~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNA-CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEESSCCSEEEEETTEE-EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EcCCCcEEEEEECCCCC-cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            56999999999999732 6999999999999999987          677888999999999999999888 88888889


Q ss_pred             CeEEEEECcCCce-------eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCcee
Q 016457          146 SQIQFWDWRNKKQ-------VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVG  218 (389)
Q Consensus       146 ~~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~  218 (389)
                      |.|++||++++..       ...+. +|...|.+++|+|++.++|++++.|+.|++||+++.. ....+..+..|...|.
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECCSSCEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecCCCCeE
Confidence            9999999987422       34454 7999999999999655699999999999999999642 2245566678999999


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      +++|+|....++++++.||.|++||+++ ...+..+..            |...|.+++|+|+++. +|++++.||.|++
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------------h~~~v~~i~~sp~~~~-~l~s~~~d~~i~i  348 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------------HKDEIFQVQWSPHNET-ILASSGTDRRLHV  348 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------------CSSCEEEEEECSSCTT-EEEEEETTSCCEE
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------------CCCCEEEEEECCCCCC-EEEEEeCCCcEEE
Confidence            9999954445899999999999999998 456777776            6689999999999864 5789999999999


Q ss_pred             EEeccCCcccc--------CCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCC
Q 016457          298 FPVNYGGAATI--------GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       298 ~~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~  361 (389)
                      ||+........        ..++..+ .+|...|+++         +|+|++. +|++++.||.|++|++...
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~---------~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDF---------SWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEE---------EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeCCCCccccCccccccCCcceEEEc-CCCCCCceEE---------EECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99987321000        1123344 4889999999         9999999 8999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-38  Score=277.80  Aligned_cols=282  Identities=9%  Similarity=-0.019  Sum_probs=213.9

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce---eeeeecCCCCcE
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---YSGECKGHSSTV   83 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~v   83 (389)
                      ...++++.|+.|++|++..    .+..+.+ ...|.+++|+|++++|++++.|+.|++||+.+++   ....+.+|...|
T Consensus        24 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v  103 (377)
T 3dwl_C           24 TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAA  103 (377)
T ss_dssp             SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCE
T ss_pred             CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCce
Confidence            3578888999999999863    4555666 8899999999999999999999999999999877   666778899999


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---EEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECc-----
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH---EVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR-----  154 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-----  154 (389)
                      .+++|+|++  ++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++..+++++.|+.|++||++     
T Consensus       104 ~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          104 TFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD  181 (377)
T ss_dssp             EEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred             EEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence            999999998  799999999999999999877   3677887 89999999999999999999999999999985     


Q ss_pred             -------------CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEE
Q 016457          155 -------------NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVG  221 (389)
Q Consensus       155 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  221 (389)
                                   .++.+..+  .|...|++++|+|+++ +|++++.|+.|++||++++......+..+..|...|.+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  258 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL  258 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred             CCccccccccccchhhhhhcc--cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence                         24445555  6899999999999996 9999999999999999966432223667788999999999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEcCCCc--eeEEeeccccc--------------------------------------cc
Q 016457          222 FFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFENARSL--------------------------------------AS  261 (389)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--------------------------------------~~  261 (389)
                      |+ +++.+|++++.++.+ +|+.....  ....+......                                      ..
T Consensus       259 ~s-~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  336 (377)
T 3dwl_C          259 WA-NESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSI  336 (377)
T ss_dssp             EE-ETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------
T ss_pred             Ec-CCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccc
Confidence            99 678888888766655 77665221  11111100000                                      00


Q ss_pred             CCccCCCCCceeeecccCCCCe--EEEEEecCCceEEEEEe
Q 016457          262 DSWTLDDVDYFVDCHYPGEGEN--LWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~--~~l~~g~~dg~i~i~~~  300 (389)
                      ......|...|.++.+.+....  ..|++|+.||.|++||+
T Consensus       337 ~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          337 SSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            1112238899999997664431  24799999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=257.40  Aligned_cols=263  Identities=17%  Similarity=0.217  Sum_probs=228.0

Q ss_pred             CCccccCCCCeEEEEecCc--eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEE
Q 016457           12 PKSQSCDNVNSIKRFGLKN--SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQ   85 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~   85 (389)
                      ...++++.|+.|++|++..  ....+.. ...|.+++|+|++++|++|+.|+.|++|++...   +.+..+.+|...|.+
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~  109 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCS  109 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEE
Confidence            3578899999999999864  3444555 889999999999999999999999999998654   567788899999999


Q ss_pred             EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           86 ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      ++|.  +  .++++++.||.|++||  .++.+..+..|...+.+++|.| ++..+++++.|+.|++||  ..+....+..
T Consensus       110 ~~~~--~--~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~  181 (313)
T 3odt_A          110 LSFQ--D--GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG  181 (313)
T ss_dssp             EEEE--T--TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS
T ss_pred             EEec--C--CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec
Confidence            9993  4  5999999999999999  6788889999999999999988 788899999999999999  4556666663


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      .|...+.+++|+|++  .+++++.||.|++||++++    ..+..+..|...|.+++|+ +++ .|++++.|+.|++||+
T Consensus       182 ~~~~~i~~~~~~~~~--~~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          182 IHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHTG----DVLRTYEGHESFVYCIKLL-PNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             SCSSCEEEEEEEETT--EEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEC-TTS-CEEEEETTSEEEEECT
T ss_pred             cCcccEEEEEEcCCC--eEEEccCCCeEEEEECCch----hhhhhhhcCCceEEEEEEe-cCC-CEEEEecCCEEEEEEC
Confidence            489999999999998  3999999999999999954    5667777899999999999 555 5899999999999999


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+++.+..+..            |...+.+++|+|+++  + ++++.||.|++|++.+++.
T Consensus       254 ~~~~~~~~~~~------------~~~~i~~~~~~~~~~--~-~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          254 ENGSLKQVITL------------PAISIWSVDCMSNGD--I-IVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             TTCCEEEEEEC------------SSSCEEEEEECTTSC--E-EEEETTSCEEEEESCGGGC
T ss_pred             CCCceeEEEec------------cCceEEEEEEccCCC--E-EEEeCCCcEEEEeCCCCce
Confidence            99999988876            668999999999987  4 4688999999999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=272.33  Aligned_cols=296  Identities=13%  Similarity=0.063  Sum_probs=233.7

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCce---eeeeecC-------------------------------------
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---YSGECKG-------------------------------------   78 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~-------------------------------------   78 (389)
                      .++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999966665 58899999999888   5555543                                     


Q ss_pred             -----------------CCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEcc--CCeEEEEEE--cCCCCeEEEEEeCCC
Q 016457           79 -----------------HSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTR--SFHEVWSVT--AGSQEIFCFSFGGST  136 (389)
Q Consensus        79 -----------------~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~  136 (389)
                                       |.+.|.+++|+|++  .+| ++++.||.|++||+.  +++.+..+.  .+...|.+++|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE--SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTS--SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCC--CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                             33379999999999  675 899999999999999  888888876  557899999999999


Q ss_pred             CeEEEeecCCeEEEEECcCCceee----eeeecccCCeeEEEEecC---CCCeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457          137 DYLLAAGCGSQIQFWDWRNKKQVA----CLEESHVEDVTQVHFVPN---NQNKVVSASVDGLICTFDTGGDINDDDLLES  209 (389)
Q Consensus       137 ~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  209 (389)
                      ..|++++.+|.|++|++.+++...    .+. +|...|++++|+|+   +. +|++++.|+.|++||++++    ..+..
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~----~~~~~  235 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQC----FIVDK  235 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCT----TCEEE
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCC----ceeee
Confidence            999999999999999998876554    666 79999999999999   75 9999999999999999854    33444


Q ss_pred             -eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc-------------cCCCCCceeee
Q 016457          210 -VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW-------------TLDDVDYFVDC  275 (389)
Q Consensus       210 -~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~  275 (389)
                       ..+|...|.+++|+  ++.+|++++.|+.|++||+.+++++..+...........             .......+.++
T Consensus       236 ~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          236 WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence             44788999999998  788999999999999999999998888764321110000             00134578999


Q ss_pred             cccCCCCeEEEEEec-CCceEEEEEe--ccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC---
Q 016457          276 HYPGEGENLWVIGGT-GAGTVGYFPV--NYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE---  349 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~-~dg~i~i~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~---  349 (389)
                      +|+|+++  +|++++ .++.|++|++  ..+..   ..++..+. +| ..|.++         +|+|++.++++++.   
T Consensus       314 ~~~~~~~--~l~~~~~~d~~i~iw~~~~~~~~~---l~~~~~~~-~~-~~v~~~---------~~~~~~~~v~~~~~~~~  377 (450)
T 2vdu_B          314 IKSKNLP--FVAFFVEATKCIIILEMSEKQKGD---LALKQIIT-FP-YNVISL---------SAHNDEFQVTLDNKESS  377 (450)
T ss_dssp             EECSSSS--EEEEEETTCSEEEEEEECSSSTTC---EEEEEEEE-CS-SCEEEE---------EEETTEEEEEECCTTCC
T ss_pred             EEeCCCC--EEEEEECCCCeEEEEEeccCCCCc---eeeccEec-cC-CceEEE---------EecCCcEEEEEecccCC
Confidence            9999998  777777 8999999999  44311   01245554 66 788899         89997655555543   


Q ss_pred             ---CCeEEEEeccCC
Q 016457          350 ---DGRLCCWLSDDS  361 (389)
Q Consensus       350 ---dg~v~iW~~~~~  361 (389)
                         +..|.+|.++..
T Consensus       378 ~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          378 GVQKNFAKFIEYNLN  392 (450)
T ss_dssp             SSCCCSEEEEEEETT
T ss_pred             CCCCcceEEEEEEcC
Confidence               556899988754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=254.21  Aligned_cols=261  Identities=18%  Similarity=0.223  Sum_probs=220.6

Q ss_pred             CCCCeEEEEecC--ceeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           18 DNVNSIKRFGLK--NSIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        18 ~~~~~i~~w~~~--~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      +.|++|++||+.  +.++.+..   ...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+.  +
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~  119 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S  119 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--T
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--C
Confidence            358999999985  45565543   6789999999999999999999999999999999999999999998877765  4


Q ss_pred             CCCEEEEEecCCeEEEEEccCC-eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee----eeeeeccc
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSF-HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV----ACLEESHV  167 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~  167 (389)
                        ..+++++.++.+++|+.... ..+..+.+|...+.++.+.+.+..+++++.|+.|++||+++++..    .... .+.
T Consensus       120 --~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~  196 (318)
T 4ggc_A          120 --YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQ  196 (318)
T ss_dssp             --TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCC
T ss_pred             --CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-ccC
Confidence              58999999999999998865 566788899999999999999999999999999999999987542    2333 677


Q ss_pred             CCeeEEEEecCCCCeEE--EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe--cCCcEEEEE
Q 016457          168 EDVTQVHFVPNNQNKVV--SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT--HIETLSIWD  243 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~i~i~d  243 (389)
                      ..|.+++++|.+.+.+.  +++.++.|++||.+...     ......+...+..+.|. +.+..+++++  .|+.|++||
T Consensus       197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~~-~~~~~~~~~sg~~d~~i~iwd  270 (318)
T 4ggc_A          197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQVCSILWS-PHYKELISGHGFAQNQLVIWK  270 (318)
T ss_dssp             SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-----EEEEEECSSCEEEEEEE-TTTTEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-----ccccccceeeeeeeeec-ccccceEEEEEcCCCEEEEEE
Confidence            88999999998875553  45678999999998542     34445677789999999 4555555543  789999999


Q ss_pred             cCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +.+++++..+.+            |...|.+++|+|+++  +|++|+.||+|+|||+...
T Consensus       271 ~~~~~~~~~l~g------------H~~~V~~l~~spdg~--~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          271 YPTMAKVAELKG------------HTSRVLSLTMSPDGA--TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEECC------------CSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCC
T ss_pred             CCCCcEEEEEcC------------CCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCC
Confidence            999999999987            779999999999999  8899999999999998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-37  Score=278.11  Aligned_cols=271  Identities=10%  Similarity=0.126  Sum_probs=208.3

Q ss_pred             CCccccCCCCeEEEEecCc----eeeeeec-CcceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeec--CCCCcE
Q 016457           12 PKSQSCDNVNSIKRFGLKN----SIQTNFG-DDYVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECK--GHSSTV   83 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~----~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v   83 (389)
                      ...|+++.||+|++||+..    ....+.+ .+.|++++|+| ++.+|++|+.||+|++||++++.......  .+...+
T Consensus       133 ~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  212 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWF  212 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCC
T ss_pred             CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccE
Confidence            3588999999999999852    2333445 88999999998 67899999999999999998765433333  344568


Q ss_pred             EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeee
Q 016457           84 NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      .+++|+|++  .+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++.. +++++.|+.|++||+++.+....+
T Consensus       213 ~~~~~~~~~--~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~  289 (435)
T 4e54_B          213 CSLDVSASS--RMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF  289 (435)
T ss_dssp             CCEEEETTT--TEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred             EEEEECCCC--CEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence            899999999  799999999999999986 4667788899999999999998875 456677999999999987654333


Q ss_pred             e--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC------CceeeEEEecCCCcEEEEEe
Q 016457          163 E--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG------TSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       163 ~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~l~~~~  234 (389)
                      .  .+|...|++++|+|++. +|++++.||.|++||++++.    ....+..|.      ..+....|+ +++..++++.
T Consensus       290 ~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  363 (435)
T 4e54_B          290 LYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD----CPLGLIPHPHRHFQHLTPIKAAWH-PRYNLIVVGR  363 (435)
T ss_dssp             SBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS----SEEEECCCCCCCCSSSCCCBCEEC-SSSSCEEEEC
T ss_pred             EEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc----cceEEecccccccccceeEEEEEc-CCCCEEEEEE
Confidence            1  26899999999999995 99999999999999998653    222222222      123345566 4444555443


Q ss_pred             ------------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee-cccCCCCeEEEEEecCCceEEEEEec
Q 016457          235 ------------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC-HYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       235 ------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                                  .++.|++||..+++.+..+...           |...|.++ +|+|+|.  +|++|+ |+.|+||+++
T Consensus       364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-----------~~~~v~s~~~fspdg~--~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-----------ESSGISSLNEFNPMGD--TLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-----------SCCCCCCEEEECTTSS--CEEEEC-SSEEEECCCC
T ss_pred             cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-----------CCCcEEEEEEECCCCC--EEEEEc-CCcEEEEECC
Confidence                        3357999999999988887542           66778887 6999998  788875 8899999999


Q ss_pred             cCCc
Q 016457          302 YGGA  305 (389)
Q Consensus       302 ~~~~  305 (389)
                      +++.
T Consensus       430 ~gk~  433 (435)
T 4e54_B          430 EART  433 (435)
T ss_dssp             ----
T ss_pred             cCee
Confidence            8764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-37  Score=276.82  Aligned_cols=280  Identities=13%  Similarity=0.125  Sum_probs=221.8

Q ss_pred             eecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeC-CCCCCEEEEEecCCeEEEEEccC---Ce---E
Q 016457           45 VPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRS---FH---E  116 (389)
Q Consensus        45 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~---~~---~  116 (389)
                      .|+|++..+++++      .|+ .+++.+..+ .+|.+.|++++|+| ++  .+|++|+.||+|++||+.+   +.   .
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~  104 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGET--PYLITGSDQGVIKIWNLKEIIVGEVYSS  104 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSS--CEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCC--CEEEEecCCceEEEeECcccccCcccce
Confidence            4788888887765      488 457888888 88999999999999 88  7999999999999999976   43   2


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCceeeeee--------e-c--ccCCeeEEE--EecCCC
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKKQVACLE--------E-S--HVEDVTQVH--FVPNNQ  180 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~--------~-~--~~~~v~~~~--~~~~~~  180 (389)
                      ...+ .|...|.+++|+|++..+++++.||.|++||++   +++.+..+.        . .  +...+.++.  +++++.
T Consensus       105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred             eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence            3333 488999999999999999999999999999995   454443332        0 1  445666766  457774


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeec--cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccc
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVIN--VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARS  258 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  258 (389)
                       +|++++.|+.|++||++++    ..+..+..  |...|.+++|+ +++.+|++++.||.|++||+++++++..+...  
T Consensus       184 -~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  255 (437)
T 3gre_A          184 -LLVALTNLSRVIIFDIRTL----ERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--  255 (437)
T ss_dssp             -EEEEEETTSEEEEEETTTC----CEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--
T ss_pred             -EEEEEeCCCeEEEEeCCCC----eeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--
Confidence             9999999999999999954    45566665  78899999999 77899999999999999999999988887521  


Q ss_pred             cccCCccCCCCCceeee----cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec-c-CCC--
Q 016457          259 LASDSWTLDDVDYFVDC----HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV-L-PMP--  330 (389)
Q Consensus       259 ~~~~~~~~~~~~~i~~~----~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~-~~~--  330 (389)
                               |...|.++    .|++++.  +|++|+.||.|++||+.+++.      +..+. +|...+..+ + +.+  
T Consensus       256 ---------~~~~v~~~~~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~  317 (437)
T 3gre_A          256 ---------DHAPITHVEVCQFYGKNSV--IVVGGSSKTFLTIWNFVKGHC------QYAFI-NSDEQPSMEHFLPIEKG  317 (437)
T ss_dssp             ---------TCEEEEEEEECTTTCTTEE--EEEEESTTEEEEEEETTTTEE------EEEEE-SSSSCCCGGGGSCBCSS
T ss_pred             ---------CCCceEEEEeccccCCCcc--EEEEEcCCCcEEEEEcCCCcE------EEEEE-cCCCCCccceecccccc
Confidence                     55789999    5556666  899999999999999998775      45554 565555544 1 211  


Q ss_pred             -------------cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          331 -------------SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       331 -------------~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                                   .+..++|+ ++++|++|+.||.|++|++...
T Consensus       318 l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          318 LEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             GGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred             cccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence                         12233788 7799999999999999999876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.3e-36  Score=269.65  Aligned_cols=296  Identities=10%  Similarity=0.052  Sum_probs=239.7

Q ss_pred             eEEEEecC----ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee-----eecCCCCcEEEEEEeCCC
Q 016457           22 SIKRFGLK----NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG-----ECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        22 ~i~~w~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~v~~i~~~~~~   92 (389)
                      .|..++..    ..+..+.....+.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|++++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN  181 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence            44445442    233344445667799999977788888888999999999988776     456799999999999988


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecccCCee
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                        .++++++.|+.|++||+.+++.+..+..|...+.+++|+|++..+++++ .++.|++||+++++.+..+.  +...+.
T Consensus       182 --~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~  257 (433)
T 3bws_A          182 --ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPR  257 (433)
T ss_dssp             --EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEE
T ss_pred             --EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCce
Confidence              7999999999999999999999999998889999999999999987776 58999999999998888876  345699


Q ss_pred             EEEEecCCCCeEEEEe--------CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCC-cEEEEEecCCcEEEE
Q 016457          172 QVHFVPNNQNKVVSAS--------VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETN-KHLWCLTHIETLSIW  242 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~i~i~  242 (389)
                      +++|+|+++ .+++++        .|+.|++||++++.     ......+...+..++|+ +++ .++++++.++.|++|
T Consensus       258 ~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          258 GLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDTIGPPGNKRHIVSG-NTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             EEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEEEEEEECEEEEEEC-SSTTEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc-----EEeeccCCCCcceEEEC-CCCCEEEEEecCCCEEEEE
Confidence            999999996 888877        48899999998542     33334555688899999 555 456777899999999


Q ss_pred             EcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC---------------CceEEEEEeccCCccc
Q 016457          243 DWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG---------------AGTVGYFPVNYGGAAT  307 (389)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~---------------dg~i~i~~~~~~~~~~  307 (389)
                      |+.+++.+..+.             +...+.+++|+|+++  +|++++.               ||.|++||+.+++.  
T Consensus       331 d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--  393 (433)
T 3bws_A          331 DLKEKKVQKSIP-------------VFDKPNTIALSPDGK--YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--  393 (433)
T ss_dssp             ETTTTEEEEEEE-------------CSSSEEEEEECTTSS--EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--
T ss_pred             ECCCCcEEEEec-------------CCCCCCeEEEcCCCC--EEEEEecCCCccccccccccccceEEEEEECCCCcE--
Confidence            999988887765             346788999999998  5555544               57999999988765  


Q ss_pred             cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccC
Q 016457          308 IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDD  360 (389)
Q Consensus       308 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~  360 (389)
                          +..+. . ...+.++         +|+|+|++|++++ .|+.|++|+++.
T Consensus       394 ----~~~~~-~-~~~~~~~---------~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          394 ----KEFWE-A-GNQPTGL---------DVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ----EEEEE-C-SSSEEEE---------EECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ----EEEec-C-CCCCceE---------EEcCCCCEEEEEECCCCeEEEEEecC
Confidence                45554 3 4567888         9999999998876 599999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.5e-36  Score=260.05  Aligned_cols=306  Identities=11%  Similarity=0.021  Sum_probs=221.8

Q ss_pred             Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCCeE
Q 016457           29 KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDGTI  106 (389)
Q Consensus        29 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i  106 (389)
                      ..++.+... .+.|++++|+|||++|++|+.++ ++||++++++.......  ..+..+++.+++  +.+ ++++.|++|
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~d~~v   83 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRT--NYVAFVTGVKEVV   83 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTS--SEEEEECSSTTEE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCC--CEEEEEECCccEE
Confidence            344544555 88999999999999999998665 78999988776655432  247788888877  455 678888999


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC-ceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK-KQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ++||+.+++.+..+. +...|.+++++++  .+++ +.++.|++||+.++ +.+..+. .   +...+++++  . .+++
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~-~~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~--~-~la~  152 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVV-SYGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN--G-LLVY  152 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEE-EETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET--T-EEEE
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEE-EEcCEEEEEECCCCceeeEEec-c---CCceEEEEc--c-EEEE
Confidence            999999999999888 4579999999853  3433 45799999999988 7777776 3   455566777  2 5555


Q ss_pred             --EeCCCcEEEEecCCCCCC-----------Ccc-ceeeeccCCceeeEEEecCCCcEEEEEecCCc-EEEEEcCCCcee
Q 016457          186 --ASVDGLICTFDTGGDIND-----------DDL-LESVINVGTSVGKVGFFGETNKHLWCLTHIET-LSIWDWKDGQNV  250 (389)
Q Consensus       186 --~~~d~~i~i~d~~~~~~~-----------~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~  250 (389)
                        |+.||.|++||++++...           ..+ +..+.+|...|.+++|+ +++.+|++++.|++ |++||+++++++
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence              588999999999964200           012 56778899999999999 78899999999998 999999999999


Q ss_pred             EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeec----
Q 016457          251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV----  326 (389)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~----  326 (389)
                      ..+....          |...|.+++|+|+++  +|++++.|+.|++||+..............+...+...+.++    
T Consensus       232 ~~~~~g~----------h~~~v~~~~~s~~~~--~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (355)
T 3vu4_A          232 REFRRGL----------DRADVVDMKWSTDGS--KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK  299 (355)
T ss_dssp             EEEECTT----------CCSCEEEEEECTTSC--EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred             EEEEcCC----------CCCcEEEEEECCCCC--EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence            9887321          668999999999999  899999999999999987643110000000000111111111    


Q ss_pred             cCCC---cccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457          327 LPMP---SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       327 ~~~~---~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~  363 (389)
                      .+..   +...++|++|+++|++++.||.+++|++....+
T Consensus       300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            0111   112348999999999999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=274.72  Aligned_cols=265  Identities=10%  Similarity=0.057  Sum_probs=212.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|.+++|+|||+++|+++.|++|+  |...+   ..+.+|...|.+++|+|++         .++.+.+|+.+.. .+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~~-~~   79 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE---------FENKLDFELAQQN-GL   79 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC---------CCCTTTTSCCCSS-CS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC---------CcceEEEEeCCCc-eE
Confidence            78899999999999999999999999  64444   4557999999999999987         4555555554322 22


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccC-----CeeEEEEecCCCCeEEEEeCCCcE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE-----DVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      ..+ .|...|.+++|+|++..+++++.||.|++||...  .+..+.  |..     .+.+++|+|+|+ +|++|+.||+|
T Consensus        80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~-~LAsgs~DGtV  153 (588)
T 2j04_A           80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIES-SIVVGNEDGEL  153 (588)
T ss_dssp             STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSS-CEEEEETTSEE
T ss_pred             eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCC-EEEEEcCCCEE
Confidence            222 3478899999999999999999999999999544  444444  443     599999999996 99999999999


Q ss_pred             EEEecCCCCCCC---ccceee----eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce---eEEeecccccccC
Q 016457          193 CTFDTGGDINDD---DLLESV----INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN---VASFENARSLASD  262 (389)
Q Consensus       193 ~i~d~~~~~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~  262 (389)
                      ++||+.++....   ..+..+    .+|...|.+++|+ |++  +++++.|+++++||+..+..   .+++...      
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~------  224 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA------  224 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC------
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCCccccceeeeccc------
Confidence            999999653101   123444    5567899999999 666  88999999999999987763   3455321      


Q ss_pred             CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCC--CCC
Q 016457          263 SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPA--QSH  340 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~--s~~  340 (389)
                           |...|.+++|+  |+  +|++++ ++.|++||+.+++.       ..+..+|...|.++         +|  +||
T Consensus       225 -----h~~~V~svaFs--g~--~LASa~-~~tIkLWd~~~~~~-------~~~~~gh~~~V~~v---------a~~~s~d  278 (588)
T 2j04_A          225 -----SRRKITDLKIV--DY--KVVLTC-PGYVHKIDLKNYSI-------SSLKTGSLENFHII---------PLNHEKE  278 (588)
T ss_dssp             -----CSSCCCCEEEE--TT--EEEEEC-SSEEEEEETTTTEE-------EEEECSCCSCCCEE---------EETTCSS
T ss_pred             -----ccCcEEEEEEE--CC--EEEEEe-CCeEEEEECCCCeE-------EEEEcCCCceEEEE---------EeeeCCC
Confidence                 66889999999  56  778886 69999999998764       34444899999999         99  999


Q ss_pred             ceeEEEecCCCeEEEEecc
Q 016457          341 GIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       341 ~~~l~s~~~dg~v~iW~~~  359 (389)
                      +..|+++++||+ ++|..+
T Consensus       279 ~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          279 STILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CEEEEECSSCEE-EEEESS
T ss_pred             CCEEEEEcCCCC-EEEeec
Confidence            999999999999 999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.1e-36  Score=269.75  Aligned_cols=258  Identities=18%  Similarity=0.253  Sum_probs=222.8

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEe
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS   89 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~   89 (389)
                      ..++++.|+.|++||+.  +....+.+ ...|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus       145 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  222 (435)
T 1p22_A          145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN  222 (435)
T ss_dssp             EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc
Confidence            46788999999999986  46667777 889999999  77899999999999999999999999999999999999996


Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCCeEE---EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSFHEV---WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +    .++++|+.||.|++||+.++...   ..+.+|...|.+++|  ++..+++++.||.|++||+++++.+..+. +|
T Consensus       223 ~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~  295 (435)
T 1p22_A          223 N----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GH  295 (435)
T ss_dssp             T----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CC
T ss_pred             C----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CC
Confidence            3    48999999999999999887654   677889999999999  57899999999999999999999999998 89


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ...|.++.++  + ..+++|+.||.|++||++++    ..+..+..|...|.+++|   ++.+|++++.||.|++||+.+
T Consensus       296 ~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          296 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             SSCEEEEEEE--T-TEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHH
T ss_pred             CCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCC
Confidence            9999999995  3 49999999999999999954    456777789999999998   466999999999999999976


Q ss_pred             Cc---------eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          247 GQ---------NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       247 ~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +.         ++..+..            |...|.+++|  ++.  +|++|+.||.|++||+.+...
T Consensus       366 ~~~~~~~~~~~~~~~~~~------------h~~~v~~l~~--~~~--~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          366 ALDPRAPAGTLCLRTLVE------------HSGRVFRLQF--DEF--QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             HTSTTSCTTTTEEEEECC------------CSSCCCCEEE--CSS--CEEECCSSSEEEEEC------
T ss_pred             CCCccccccchheeeccC------------CCCCeEEEEe--CCC--EEEEEeCCCEEEEEECCCCCC
Confidence            65         6666665            7789999999  566  789999999999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.3e-34  Score=253.86  Aligned_cols=315  Identities=12%  Similarity=0.070  Sum_probs=243.3

Q ss_pred             cccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeE-EEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457           15 QSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLM-AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      ++++.++.|++||+.  +.+..+.+...+.+++|+|++++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus         6 vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd   84 (391)
T 1l0q_A            6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence            467889999999986  455566666679999999999877 566689999999999999988888655 8999999999


Q ss_pred             CCCCEEE-EEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEE-EeecCCeEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLH-SCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLL-AAGCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +  ++|+ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.++ +++.++.|++||+++++.+..+. . ...
T Consensus        85 g--~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~-~~~  159 (391)
T 1l0q_A           85 G--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-V-GRS  159 (391)
T ss_dssp             S--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-C-CSS
T ss_pred             C--CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-c-CCC
Confidence            9  5664 5556799999999999998888865 6789999999999885 55559999999999999888887 3 456


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe---cCCcEEEEEcCC
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT---HIETLSIWDWKD  246 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~  246 (389)
                      +.+++|+|+++.++++++.++.|++||++++.     ......+...+.+++|+ ++++++++++   .++.|++||+.+
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVKVEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEECSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEecCCCccceEEC-CCCCEEEEEecCcCCCcEEEEECCC
Confidence            79999999996334678889999999998542     33334466788999999 6777788777   689999999999


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeee-
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRS-  325 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~-  325 (389)
                      ++.+..+..+             ..+.+++|+|+++. ++++++.|+.|++||+.+++.      +..+. .|..+... 
T Consensus       234 ~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~s~~~d~~v~v~d~~~~~~------~~~~~-~~~~~~~~~  292 (391)
T 1l0q_A          234 NKITARIPVG-------------PDPAGIAVTPDGKK-VYVALSFXNTVSVIDTATNTI------TATMA-VGKNPYASG  292 (391)
T ss_dssp             TEEEEEEECC-------------SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEE------EEEEE-CSSSEECCS
T ss_pred             CeEEEEEecC-------------CCccEEEEccCCCE-EEEEcCCCCEEEEEECCCCcE------EEEEE-CCcCCCccc
Confidence            9888877652             35788999999983 236778999999999998776      45554 44433221 


Q ss_pred             --c--cCCCccc-CCCCCCCc----------eeEEEecCCCeEEEEeccCCc
Q 016457          326 --V--LPMPSVQ-GRPAQSHG----------IFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       326 --~--~~~~~~~-~~~~s~~~----------~~l~s~~~dg~v~iW~~~~~~  362 (389)
                        +  .+....+ ...|+.+.          ..+.+.+.|..+++|++.++.
T Consensus       293 ~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          293 QFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             SCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             eeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence              1  1211111 12343322          456777889999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-36  Score=261.98  Aligned_cols=272  Identities=9%  Similarity=0.009  Sum_probs=214.4

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc---------C
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR---------S  113 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~---------~  113 (389)
                      ...+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|.     +++++.|++|++|+..         +
T Consensus        41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             CSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCC
Confidence            34566788999999999999999999998888776  466778888764     9999999999999665         4


Q ss_pred             CeEEEEEE-cCCCCeEEEEEeC--CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          114 FHEVWSVT-AGSQEIFCFSFGG--STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       114 ~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ++.+..+. .|...|.+++|+|  ++..+++++.||.|++||+++++.+......+...+++++|+|++. +|++|+.||
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg  192 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDG  192 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTS
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCC
Confidence            55455555 5668899999999  8999999999999999999999887666535666899999999995 999999999


Q ss_pred             cEEEEecCCCCCCCccc-eeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCC
Q 016457          191 LICTFDTGGDINDDDLL-ESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDD  268 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  268 (389)
                      .|++||++++.    .+ ..+.. |..+|.+++|+ +++.+|++++ ++.|++||+++++.+..+....         .|
T Consensus       193 ~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs-~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~---------~~  257 (343)
T 3lrv_A          193 ILDVYNLSSPD----QASSRFPVDEEAKIKEVKFA-DNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT---------IP  257 (343)
T ss_dssp             CEEEEESSCTT----SCCEECCCCTTSCEEEEEEC-TTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB---------C-
T ss_pred             EEEEEECCCCC----CCccEEeccCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEEcCCCCcceeecccc---------cc
Confidence            99999999653    23 45555 89999999999 7888999999 5599999999887665544311         02


Q ss_pred             CCce--eeecccCCCCeEEEEEecC-CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC---Cce
Q 016457          269 VDYF--VDCHYPGEGENLWVIGGTG-AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS---HGI  342 (389)
Q Consensus       269 ~~~i--~~~~~~~~~~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~---~~~  342 (389)
                      ...+  .+++|+|+++  +|++++. |+.|++|++.....      ....     .++..+         +|++   +.+
T Consensus       258 ~~~~~~~~~~~~~~g~--~l~~~s~~d~~i~v~~~~~~~~------~~~~-----~~~~~~---------~~~~~~~~~~  315 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGK--NMIAYSNESNSLTIYKFDKKTK------NWTK-----DEESAL---------CLQSDTADFT  315 (343)
T ss_dssp             ----CCEEEEECTTSS--EEEEEETTTTEEEEEEECTTTC------SEEE-----EEEEEC---------CC----CCCC
T ss_pred             cccccceEEEECCCCC--EEEEecCCCCcEEEEEEccccc------ceEe-----cCceeE---------ecCccccccc
Confidence            2233  3699999999  8888887 99999999976543      1111     566777         7887   888


Q ss_pred             eEEEecCCCeEEEEecc
Q 016457          343 FGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       343 ~l~s~~~dg~v~iW~~~  359 (389)
                      .|++++.||.++++-..
T Consensus       316 ~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          316 DMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEEEEEETTEEEEEEEC
T ss_pred             eeEEEecCCceEEEEec
Confidence            89999999999988543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-36  Score=265.15  Aligned_cols=263  Identities=10%  Similarity=0.073  Sum_probs=203.0

Q ss_pred             CCeEEEEecCce------------eeeeec-CcceEEEeecCCCCeEEEEe-----------cCCeEEEEeCCCceee--
Q 016457           20 VNSIKRFGLKNS------------IQTNFG-DDYVFEIVPKNDWSLMAVSL-----------STNVVKLYSPVTGQYS--   73 (389)
Q Consensus        20 ~~~i~~w~~~~~------------~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------~d~~i~iw~~~~~~~~--   73 (389)
                      ++.|++|++...            ...+.+ .+.|.++++++  +.+++|.           .|+.+++|++.+.+..  
T Consensus        42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~  119 (365)
T 4h5i_A           42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE  119 (365)
T ss_dssp             CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred             CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence            446999997421            112334 66788887654  4666654           4678999997654321  


Q ss_pred             --ee-----ecCCCCcEEEEEEeCCCCCCEEEE--EecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec
Q 016457           74 --GE-----CKGHSSTVNQISFSGPSTPHVLHS--CSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        74 --~~-----~~~~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                        ..     ...+...+.+++|+|++  +++++  ++.|++|+|||+.+++++..+. |...|.+++|+|++..+++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~fSpDg--~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~  196 (365)
T 4h5i_A          120 FLTSVDFDASTNADDYTKLVYISREG--TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG  196 (365)
T ss_dssp             EEEEECSSCCCCTTCCEEEEEECTTS--SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS
T ss_pred             EeeeeceeecCCcccCEEEEEEcCCC--CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc
Confidence              11     12345568999999999  67654  5578999999999999999887 5688999999999888877764


Q ss_pred             CCeEEEEECcCCceeee-eeecccCCeeEEEEecCCCCeEEEEeCCC----cEEEEecCCCCCCCccceeeeccCCceee
Q 016457          145 GSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVPNNQNKVVSASVDG----LICTFDTGGDINDDDLLESVINVGTSVGK  219 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  219 (389)
                       +.+.+|+..+++.+.. ....|...|.+++|+|++. .+++++.|+    .+++||+............+..|...|.+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~  274 (365)
T 4h5i_A          197 -SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS  274 (365)
T ss_dssp             -SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred             -eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence             5677777777765533 2236888999999999996 999998887    58889887543222234456678889999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ++|+ |++++|++|+.|++|+|||+.+++++..+..           +|...|++++|+|||+  +|++|+.|++|+||+
T Consensus       275 ~~~S-pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-----------gH~~~V~~v~fSpdg~--~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          275 MDVD-MKGELAVLASNDNSIALVKLKDLSMSKIFKQ-----------AHSFAITEVTISPDST--YVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEETT-----------SSSSCEEEEEECTTSC--EEEEEETTSEEEEEE
T ss_pred             EEEC-CCCCceEEEcCCCEEEEEECCCCcEEEEecC-----------cccCCEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            9999 7899999999999999999999999888642           1789999999999999  899999999999999


Q ss_pred             eccC
Q 016457          300 VNYG  303 (389)
Q Consensus       300 ~~~~  303 (389)
                      +...
T Consensus       341 ip~~  344 (365)
T 4h5i_A          341 LPLN  344 (365)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            9754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.3e-35  Score=265.86  Aligned_cols=249  Identities=14%  Similarity=0.130  Sum_probs=212.0

Q ss_pred             CcceEEEeecCC-CCeEEEEecCCeEEEEeCCC----------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeE
Q 016457           38 DDYVFEIVPKND-WSLMAVSLSTNVVKLYSPVT----------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        38 ~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      .+.|++++|+|+ +.+||+++.+|.|++|++.+          .+.+..+.+|...|.+++|+|++. .+|++|+.||.|
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i  206 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-GYLLSASDDHTI  206 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-TEEEEECTTSCE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-CeEEEEeCCCeE
Confidence            889999999997 68999999999999999986          577788899999999999999983 399999999999


Q ss_pred             EEEEccCCeE-------EEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEEEECcCC---ceeeeeeecccCCeeEEEE
Q 016457          107 RAWDTRSFHE-------VWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQFWDWRNK---KQVACLEESHVEDVTQVHF  175 (389)
Q Consensus       107 ~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~  175 (389)
                      ++|++.++..       ...+..|...|.+++|+| .+..+++++.|+.|++||++++   +.+..+. .|...|++++|
T Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~  285 (430)
T 2xyi_A          207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSF  285 (430)
T ss_dssp             EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEE
T ss_pred             EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEe
Confidence            9999987321       456778899999999999 4566677778999999999987   5667776 89999999999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC--------
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG--------  247 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------  247 (389)
                      +|+++.+|++|+.||.|++||+++.   ...+..+..|...|.+++|+|.+..+|++++.|+.|++||+...        
T Consensus       286 ~p~~~~~l~tg~~dg~v~vwd~~~~---~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  362 (430)
T 2xyi_A          286 NPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  362 (430)
T ss_dssp             CSSCTTEEEEEETTSEEEEEETTCT---TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred             CCCCCCEEEEEeCCCeEEEEeCCCC---CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence            9999768999999999999999953   24567777899999999999555568999999999999999862        


Q ss_pred             ------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          248 ------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       248 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                            +.+..+.+            |...|.+++|+|+++. +|++++.||.|++|++....
T Consensus       363 ~~~~~~~~~~~~~~------------h~~~v~~~~~~p~~~~-~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          363 AEDGPPELLFIHGG------------HTAKISDFSWNPNEPW-IICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             HHHCCTTEEEECCC------------CSSCEEEEEECSSSTT-EEEEEETTSEEEEEEECHHH
T ss_pred             cccCCcceEEEcCC------------CCCCceEEEECCCCCC-EEEEEECCCCEEEeEccccc
Confidence                  34444444            6789999999999874 47889999999999997643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-36  Score=287.78  Aligned_cols=256  Identities=13%  Similarity=0.188  Sum_probs=213.8

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc--CCeEEEEEEcCCCCeEEEEEeCC--CCeEEEeecCCeEE
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR--SFHEVWSVTAGSQEIFCFSFGGS--TDYLLAAGCGSQIQ  149 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  149 (389)
                      ..+.+|.+.|++++|+|++  ++|++|+.||+|++||+.  +++.+..+.+|...|++++|+|+  +..+++++.||.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg--~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSS--CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCC--CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            4578899999999999999  799999999999999998  56778889999999999999987  88999999999999


Q ss_pred             EEECcCCc--eeeeeeecccCCeeEEEEecC--CCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457          150 FWDWRNKK--QVACLEESHVEDVTQVHFVPN--NQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE  225 (389)
Q Consensus       150 iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (389)
                      +||+++++  .+..+. .|...|++++|+|+  +. .+++|+.||.|++||++++.  .........|...|.+++|+|.
T Consensus        81 vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~--~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           81 IWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSS--CCCCEEEECCSSCEEEEEECCC
T ss_pred             EEECCCCccccccccc-CCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCC--CcceeEeecCCCceEEEEecCc
Confidence            99999886  566666 79999999999999  74 99999999999999999652  2334556778999999999953


Q ss_pred             ------------CCcEEEEEecCCcEEEEEcCCCc----eeEEeecccccccCCccCCCCCceeeecccCC---CCeEEE
Q 016457          226 ------------TNKHLWCLTHIETLSIWDWKDGQ----NVASFENARSLASDSWTLDDVDYFVDCHYPGE---GENLWV  286 (389)
Q Consensus       226 ------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l  286 (389)
                                  ++.++++++.||.|++||++++.    ....+..            |...|.+++|+|+   +.  +|
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~~~--~l  222 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRS--YL  222 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSE--EE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC------------CCCcEEEEEeccCCCCCC--EE
Confidence                        57899999999999999998773    3444444            7799999999999   66  88


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      ++|+.||.|++||+.+++..... .+... .+|...|.++         +|+|+|++|++|+.||.|++|++..
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~-~~~~~~v~~l---------~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPWKK-TLLKE-EKFPDVLWRA---------SWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCCBC-CBSSS-SCCSSCCCCE---------EECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCEEEEecCCCCCCccee-EEecc-CCCCCceEEE---------EEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999999999986421110 01112 2577888888         9999999999999999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.1e-36  Score=265.12  Aligned_cols=301  Identities=10%  Similarity=0.077  Sum_probs=207.4

Q ss_pred             CcceEEEeec---CCCCeEEEEecCCeEEEEeCCCc----------eeeeeecCCCCcEEEEEEeC--------------
Q 016457           38 DDYVFEIVPK---NDWSLMAVSLSTNVVKLYSPVTG----------QYSGECKGHSSTVNQISFSG--------------   90 (389)
Q Consensus        38 ~~~v~~~~~~---~~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~v~~i~~~~--------------   90 (389)
                      ....+++.|.   |++..+++++.++.|.+|+....          ..+..+ .+...+..+.|.+              
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC-------
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcc
Confidence            3445566663   44444444455888999975321          111111 2344455555543              


Q ss_pred             ------CCCCCEEEEEecCCeEEEEEccCCeEEE-----EEEcCCCCeEEEEEeC--------CCCeEEEeecCCeEEEE
Q 016457           91 ------PSTPHVLHSCSSDGTIRAWDTRSFHEVW-----SVTAGSQEIFCFSFGG--------STDYLLAAGCGSQIQFW  151 (389)
Q Consensus        91 ------~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iw  151 (389)
                            ++  .+|++++.|++|+|||+++++...     .+.+|...|++++|+|        ++..|++++.|++|++|
T Consensus        94 ~~~~~~~~--~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           94 VNSSPVYS--LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             ---CCEEE--EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             eeecCCCC--CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence                  33  579999999999999999886543     3567999999999997        56788888999999999


Q ss_pred             ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc---------------------ceee
Q 016457          152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL---------------------LESV  210 (389)
Q Consensus       152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------------------~~~~  210 (389)
                      |++++.++..+. .|...+.+++|+|++.++|++++.|+.|++||++++......                     ....
T Consensus       172 d~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          172 RLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             EEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             ECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            999888887777 799999999999998668999999999999999876421111                     0112


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC-Cc-----cCCCCCceeeecccCCCCeE
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD-SW-----TLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~i~~~~~~~~~~~~  284 (389)
                      ..|...+.++.|+++++..+++++.|+++++||+..++....+..+...... .+     ..........+.++|...+.
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            3566788999999889999999999999999999887766555432110000 00     00122334445566655555


Q ss_pred             EEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          285 WVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       285 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      ++++|+.||.|++||+.+++.      +..+. +|..+|+++         +|+|||++||++++|| +.+|++.
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~------~~~~~-~~~~~V~sv---------afspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDS------NSIPI-QLGMPIVDF---------CWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTC------CEEEE-ECSSCEEEE---------EECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEECCCCEEEEEECCCCcE------EEEec-CCCCcEEEE---------EEcCCCCEEEEEeCCC-eEEEEEe
Confidence            889999999999999998776      45554 788899999         9999999999999665 6677664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=266.58  Aligned_cols=265  Identities=9%  Similarity=0.119  Sum_probs=204.2

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----------EEEEEEcCC------------CCeEEEEEeCC
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----------EVWSVTAGS------------QEIFCFSFGGS  135 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~  135 (389)
                      +.+.|++++|+|++  ++|++|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|+
T Consensus        27 ~~~~V~~v~~s~~g--~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSG--ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GGGSEEEEEECSSS--SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccCcEEEEEECCCC--CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            67899999999999  799999999999999999876           578899998            88999999998


Q ss_pred             C--CeEEEeecCCeEEEEECcCCcee---------------------------------------eeeeecccCCeeEEE
Q 016457          136 T--DYLLAAGCGSQIQFWDWRNKKQV---------------------------------------ACLEESHVEDVTQVH  174 (389)
Q Consensus       136 ~--~~l~~~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~  174 (389)
                      +  ..+++++.|+.|++||+.++...                                       ..+..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  78999999999999999864432                                       122237999999999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccce-------eeeccCCceeeEEEecCCC-cEEEEEecCCcEEEEEcCC
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE-------SVINVGTSVGKVGFFGETN-KHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  246 (389)
                      |+|++. +|++| .|+.|++||+++..   ..+.       .+..|...|.+++|+ +++ .+|++++.|+.|++||+++
T Consensus       185 ~~~~~~-~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          185 INSDYE-TYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             ECTTSS-EEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTT
T ss_pred             EcCCCC-EEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcC
Confidence            999995 99998 79999999998321   1111       245788899999999 555 8999999999999999999


Q ss_pred             Cce----eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc-CCccccCCCeEEEecccce
Q 016457          247 GQN----VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY-GGAATIGPPEAVLVGGHTA  321 (389)
Q Consensus       247 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~h~~  321 (389)
                      ++.    +..+..+..........+|...|.+++|+|+++  +|++++. |.|++||+.+ ++.      +..+. +|..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~-~~v~iwd~~~~~~~------~~~~~-~~~~  328 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--YMMTRDY-LSVKVWDLNMENRP------VETYQ-VHEY  328 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS--EEEEEES-SEEEEEETTCCSSC------SCCEE-SCGG
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCC--EEEEeeC-CeEEEEeCCCCccc------cceee-cccc
Confidence            886    677765321110000011223899999999999  8899988 9999999986 544      45555 6764


Q ss_pred             eeeecc---CCC---cccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          322 VVRSVL---PMP---SVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       322 ~v~~~~---~~~---~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .+..++   ...   ..+.++|+|++++|++|+.||.|++|++...
T Consensus       329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            333210   000   1112389999999999999999999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.9e-35  Score=253.06  Aligned_cols=255  Identities=15%  Similarity=0.138  Sum_probs=205.3

Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe---EEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEE
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQF  150 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i  150 (389)
                      ...+|.+.|.+++|+|++  .+|++++.|+.|++|++.++.   ....+..|...|.+++|+|++. .+++++.||.|++
T Consensus         6 ~~~~h~~~v~~~~~s~~~--~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cccCCCCcEEEEEEcCCC--CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            345799999999999998  799999999999999998876   3455668899999999999999 8999999999999


Q ss_pred             EEC-cCCceeeeeeec--ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC-----CccceeeeccCCceeeEEE
Q 016457          151 WDW-RNKKQVACLEES--HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND-----DDLLESVINVGTSVGKVGF  222 (389)
Q Consensus       151 wd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~  222 (389)
                      ||+ .+++. ..+. +  |...|.+++|+| + ..|++++.|+.|++||+++....     ...+..+ .+...+.+++|
T Consensus        84 wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  158 (342)
T 1yfq_A           84 VDLIGSPSF-QALT-NNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSE-EECB-SCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEE
T ss_pred             EEeccCCce-Eecc-ccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEe
Confidence            999 77654 5555 7  999999999999 7 49999999999999999851000     1222223 37889999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEcCC-CceeEEeecccccccCCccCCCCCceeeecccC-CCCeEEEEEecCCceEEEEEe
Q 016457          223 FGETNKHLWCLTHIETLSIWDWKD-GQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      + +++  +++++.|+.|++||+++ +..........          |...+.+++|+| +++  ++++|+.||.|++|++
T Consensus       159 ~-~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~--~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          159 N-SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG----------LKYQIRDVALLPKEQE--GYACSSIDGRVAVEFF  223 (342)
T ss_dssp             C-SSE--EEEEESTTEEEEEESSCCTTCCCEEEECS----------CSSCEEEEEECSGGGC--EEEEEETTSEEEEEEC
T ss_pred             c-CCc--EEEEeCCCeEEEEECCccccccceeeecC----------CCCceeEEEECCCCCC--EEEEEecCCcEEEEEE
Confidence            8 443  99999999999999988 54322211111          668899999999 998  8899999999999999


Q ss_pred             ccCCccccCCCeEEEecccce---------eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          301 NYGGAATIGPPEAVLVGGHTA---------VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..........+...+. +|..         .|.++         +|+|++++|++|+.||.|++|++...
T Consensus       224 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~---------~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSI---------EFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CTTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEE---------EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cCCCcccccccceeee-cccccccccccceeEEEE---------EEcCCCCEEEEecCCceEEEEcCccH
Confidence            8761000112245554 6654         89999         99999999999999999999999866

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-35  Score=257.85  Aligned_cols=288  Identities=9%  Similarity=0.007  Sum_probs=218.0

Q ss_pred             CCCCccccCCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           10 SQPKSQSCDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      +-...||++.|++|+  + .+....+.+ ...|++++|+|+|       .++.+.+|+.+ +.....+ .|...|.+++|
T Consensus        26 DG~~iASas~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~-~~~~~~~-~~~~~V~~vaw   93 (588)
T 2j04_A           26 DGTLYLTTFPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQ-QNGLLNS-QPVCYPRVCKP   93 (588)
T ss_dssp             TSCEEEECSSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC-SSCSSTT-SCSCCEEEEEE
T ss_pred             CCCEEEEEcCCceee--c-ccccceecCCCccEEEEEECCCC-------CcceEEEEeCC-CceEeec-CCCCcEEEEEE
Confidence            444688999999999  5 333344456 8999999999999       35555555533 2223333 46889999999


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC-----CeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-----
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-----EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-----  158 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----  158 (389)
                      +|+|  ..||+++.||+|++||...  .+..+. |..     .|.+++|+|+++.|++++.||+|++||+.++..     
T Consensus        94 SPdG--~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           94 SPID--DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             CSSS--SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             CCCC--CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence            9999  7999999999999999654  666666 654     599999999999999999999999999998753     


Q ss_pred             --eeeee---ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEE
Q 016457          159 --VACLE---ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       159 --~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                        +.++.   .+|...|.+++|+|++   +++++.|+.|++||+.++. .......+ ..|...|.+++|+   ++.|++
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~-~~~~~~tL~~~h~~~V~svaFs---g~~LAS  241 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASS-HQPVSRMIQNASRRKITDLKIV---DYKVVL  241 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSS-SCCCEEEEECCCSSCCCCEEEE---TTEEEE
T ss_pred             eeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCc-cccceeeecccccCcEEEEEEE---CCEEEE
Confidence              45652   3678899999999986   8888999999999998543 11112334 3677899999998   368888


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc--cCCCCeEEEEEecCCceEEEEEeccCCc-----
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY--PGEGENLWVIGGTGAGTVGYFPVNYGGA-----  305 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~g~~dg~i~i~~~~~~~~-----  305 (389)
                      ++ +++|++||+.+++......+            |...+.++.|  +|++.  .|+++++||. ++|....-..     
T Consensus       242 a~-~~tIkLWd~~~~~~~~~~~g------------h~~~V~~va~~~s~d~~--~La~a~edG~-klw~~d~~~~spd~~  305 (588)
T 2j04_A          242 TC-PGYVHKIDLKNYSISSLKTG------------SLENFHIIPLNHEKEST--ILLMSNKTSY-KVLLEDELHVTADNI  305 (588)
T ss_dssp             EC-SSEEEEEETTTTEEEEEECS------------CCSCCCEEEETTCSSCE--EEEECSSCEE-EEEESSSEEEECCCS
T ss_pred             Ee-CCeEEEEECCCCeEEEEEcC------------CCceEEEEEeeeCCCCC--EEEEEcCCCC-EEEeeccEEECCCce
Confidence            87 69999999998766433324            7799999999  99987  8899999999 9998642110     


Q ss_pred             ------------cccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          306 ------------ATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       306 ------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                                  ...+.++..+.  +...|+++         +|||||+.+|+++
T Consensus       306 l~a~~d~~v~lW~~~g~~l~~~~--~~~~I~~v---------a~SPdG~~lA~~~  349 (588)
T 2j04_A          306 IAPYLEKKFKKWSTIWNEFNNYE--TTLVIHGI---------SLSPDGYSIAIVY  349 (588)
T ss_dssp             SHHHHHHHHHHTTTTTTSSSSSC--CEEEEEEE---------EECTTSSEEEEEE
T ss_pred             EEEEcCCEEEEEECCCCceeeec--cceEEEEE---------EECCCCCEEEEEE
Confidence                        00112223222  25567777         9999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.6e-33  Score=248.07  Aligned_cols=267  Identities=9%  Similarity=0.022  Sum_probs=219.1

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++  .++ ++++.|+.|++||+.+++.+..+..+ ..+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~   78 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQG   78 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccc
Confidence            467888889999999999999999888765 58999999999  555 67779999999999999999998876 49999


Q ss_pred             EEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce
Q 016457          130 FSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  208 (389)
                      ++|+|+++.+++++. ++.|++||+.+++.+..+.  +...+.+++|+|+++.++++++.++.|++||+.++    ..+.
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~  152 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVIN  152 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEE
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEE
Confidence            999999998877765 7999999999998888876  45678999999999633478888999999999854    2333


Q ss_pred             eeeccCCceeeEEEecCCCcEE-EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          209 SVINVGTSVGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      .+ .....+..++|+ ++++.+ ++++.++.|++||+.+++.+..+.             +...+.+++|+|+++  +|+
T Consensus       153 ~~-~~~~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~~~~~~~~~~g~--~l~  215 (391)
T 1l0q_A          153 TV-SVGRSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------VEAAPSGIAVNPEGT--KAY  215 (391)
T ss_dssp             EE-ECCSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------CSSEEEEEEECTTSS--EEE
T ss_pred             EE-ecCCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-------------cCCCccceEECCCCC--EEE
Confidence            33 334567899999 566655 677788999999999998877765             346788999999998  556


Q ss_pred             Eec---CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE-EEecCCCeEEEEeccCC
Q 016457          288 GGT---GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG-WTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       288 ~g~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iW~~~~~  361 (389)
                      +++   .++.|++||+.+++.      +..+. .|. .+.++         +|+|++++| ++++.|+.|++|++...
T Consensus       216 ~~~~~~~~~~v~~~d~~~~~~------~~~~~-~~~-~~~~~---------~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          216 VTNVDKYFNTVSMIDTGTNKI------TARIP-VGP-DPAGI---------AVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEECSSCCEEEEEETTTTEE------EEEEE-CCS-SEEEE---------EECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEecCcCCCcEEEEECCCCeE------EEEEe-cCC-CccEE---------EEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            665   689999999998765      45555 444 45777         899999877 67789999999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-34  Score=251.71  Aligned_cols=273  Identities=15%  Similarity=0.146  Sum_probs=202.6

Q ss_pred             CCCccccCCCCeEEEEecCc------eeeeeec-CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCc---------ee
Q 016457           11 QPKSQSCDNVNSIKRFGLKN------SIQTNFG-DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTG---------QY   72 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~~------~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~---------~~   72 (389)
                      ....++++.|+.|++|++..      ....+.+ ...|.+++|+|  ++++|++|+.||.|++||+.++         +.
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~  102 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK  102 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred             CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence            34678899999999999863      4455566 88999999999  6899999999999999999876         55


Q ss_pred             eeeecCCCCcEEEEEEeCC--CCCCEEEEEecCCeEEEEEccCCeEEEEEE-------------cCCCCeEEEEEeCC--
Q 016457           73 SGECKGHSSTVNQISFSGP--STPHVLHSCSSDGTIRAWDTRSFHEVWSVT-------------AGSQEIFCFSFGGS--  135 (389)
Q Consensus        73 ~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~--  135 (389)
                      +..+.+|...|.+++|+|+  +  .+|++++.||.|++||+++++.+..+.             .|...+.+++|+|+  
T Consensus       103 ~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  180 (351)
T 3f3f_A          103 LCTLNDSKGSLYSVKFAPAHLG--LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF  180 (351)
T ss_dssp             EEEECCCSSCEEEEEECCGGGC--SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS
T ss_pred             eeeecccCCceeEEEEcCCCCC--cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC
Confidence            7788899999999999998  7  799999999999999998876543332             46788999999997  


Q ss_pred             -CCeEEEeecCCeEEEEECcCCce--eeeeeecccCCeeEEEEecCCC---CeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457          136 -TDYLLAAGCGSQIQFWDWRNKKQ--VACLEESHVEDVTQVHFVPNNQ---NKVVSASVDGLICTFDTGGDINDDDLLES  209 (389)
Q Consensus       136 -~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  209 (389)
                       +..+++++.++.+.+|+...++.  +..+. +|...|++++|+|++.   .+|++++.||.|++||++.+...    ..
T Consensus       181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~  255 (351)
T 3f3f_A          181 SPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP----LA  255 (351)
T ss_dssp             SCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------
T ss_pred             CCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc----cc
Confidence             88899999999998888877765  56666 7999999999999972   38999999999999999854211    11


Q ss_pred             eeccCCceeeEEEecCCCcEEEE----EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEE
Q 016457          210 VINVGTSVGKVGFFGETNKHLWC----LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLW  285 (389)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  285 (389)
                      .............. .....+..    +.....+.+|+....+.+..+.+            |...|.+++|+|+++  +
T Consensus       256 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~~~~s~~~~--~  320 (351)
T 3f3f_A          256 SEESLTNSNMFDNS-ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD------------HNGEVWSVSWNLTGT--I  320 (351)
T ss_dssp             ------------------------------------CCSEEEEEEEEECT------------TSSCEEEEEECSSSC--C
T ss_pred             cCCcccceeccCCC-cccccccccccccccceeeeecccccccEEEEEec------------ccccEEEEEEcCCCC--E
Confidence            11111122222222 22222222    22334555666555666677765            779999999999998  8


Q ss_pred             EEEecCCceEEEEEeccCCc
Q 016457          286 VIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       286 l~~g~~dg~i~i~~~~~~~~  305 (389)
                      |++|+.||.|++|++.+++.
T Consensus       321 l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSC
T ss_pred             EEEecCCCcEEEEecCcCcc
Confidence            89999999999999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.1e-33  Score=243.41  Aligned_cols=262  Identities=15%  Similarity=0.158  Sum_probs=206.2

Q ss_pred             EEeCCCceeeeeecCCCCcEEEEEEeCC---CCCCEEEEEecCCeEEEEEccC-CeEE-EEEEcCCCCeEEEEEeCCCCe
Q 016457           64 LYSPVTGQYSGECKGHSSTVNQISFSGP---STPHVLHSCSSDGTIRAWDTRS-FHEV-WSVTAGSQEIFCFSFGGSTDY  138 (389)
Q Consensus        64 iw~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~  138 (389)
                      .++....+.+..+.+|.+.|++++|+|+   +  .+|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++..
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPG--NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSS--EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCc--eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE
Confidence            3455566778888999999999999998   5  6999999999999999987 5554 788899999999999999999


Q ss_pred             EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEE--ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCc
Q 016457          139 LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHF--VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTS  216 (389)
Q Consensus       139 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  216 (389)
                      +++++.||.|++||+++++.+...  .|...|.+++|  +|++. +|++++.||.|++||++++    ..+..+. ....
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~----~~~~~~~-~~~~  172 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSS----NPMMVLQ-LPER  172 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCS----SCSEEEE-CSSC
T ss_pred             EEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCC----cEEEEEe-cCCC
Confidence            999999999999999998877654  59999999999  88885 9999999999999999964    3344444 3346


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC--CeEEEEEecCCce
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG--ENLWVIGGTGAGT  294 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~g~~dg~  294 (389)
                      +.++.+. .  ..+++++.++.+.+|++.............          +......+.+.++.  ....+++|+.||.
T Consensus       173 ~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  239 (368)
T 3mmy_A          173 CYCADVI-Y--PMAVVATAERGLIVYQLENQPSEFRRIESP----------LKHQHRCVAIFKDKQNKPTGFALGSIEGR  239 (368)
T ss_dssp             EEEEEEE-T--TEEEEEEGGGCEEEEECSSSCEEEEECCCS----------CSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred             ceEEEec-C--CeeEEEeCCCcEEEEEeccccchhhhcccc----------ccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence            6677776 2  378899999999999998765443332211          22334444444333  2224899999999


Q ss_pred             EEEEEeccCCccccCCCeEEEecccce------------eeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          295 VGYFPVNYGGAATIGPPEAVLVGGHTA------------VVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       295 i~i~~~~~~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      |++|++......   ..+..+. +|..            .|.++         +|+|++++|++|+.||.|++|++...
T Consensus       240 i~i~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~v~~~---------~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          240 VAIHYINPPNPA---KDNFTFK-CHRSNGTNTSAPQDIYAVNGI---------AFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEESSCSCHH---HHSEEEE-CSEEC----CCCEEECCEEEE---------EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EEEEecCCCCcc---ccceeee-eeecccccccccccccceEEE---------EEecCCCEEEEEccCCeEEEEECCCC
Confidence            999999876320   1134554 6665            68888         99999999999999999999999865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.6e-32  Score=227.88  Aligned_cols=278  Identities=12%  Similarity=0.073  Sum_probs=192.8

Q ss_pred             eEEEeecCCCC---eEEEEecCCeEEEEeCCCc---eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE-EEEcc-
Q 016457           41 VFEIVPKNDWS---LMAVSLSTNVVKLYSPVTG---QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR-AWDTR-  112 (389)
Q Consensus        41 v~~~~~~~~~~---~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~-iwd~~-  112 (389)
                      +.++-|-..+.   .+++++ ...|++|+..++   +.++++..|..+|..|.+.|+.. +++..+-.+=.++ ++-+. 
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY-NLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC-SCEEEEECSSSEEEEEEECC
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc-ceeeeeeccccccceEEEEE
Confidence            45555655443   566776 689999999998   88999999999999999999775 4444443222221 22111 


Q ss_pred             -CC----eEEEEEEcCCCCeEEEEEeCCCCeEEEee---cCCeEEEEEC-cCCceeeeeeecccCCeeEEEEec---CCC
Q 016457          113 -SF----HEVWSVTAGSQEIFCFSFGGSTDYLLAAG---CGSQIQFWDW-RNKKQVACLEESHVEDVTQVHFVP---NNQ  180 (389)
Q Consensus       113 -~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~---~~~  180 (389)
                       ..    .....-.+|...|.++    .+++++.++   .|+.|++|++ .+++.+..+. .|...++.++|+|   ++.
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTT
T ss_pred             CCCccccccEEEeCCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCc
Confidence             11    1111112333334443    345555554   3999999999 4588888887 8999999999999   665


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeeccC---CceeeEEEecCCCcEE------------EEEecCCcEEEEEcC
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVINVG---TSVGKVGFFGETNKHL------------WCLTHIETLSIWDWK  245 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l------------~~~~~d~~i~i~d~~  245 (389)
                       .|++++.|++|+|||+.++    +.+..+..+.   ..+.+++|+ +++.++            ++|+.|++|++||..
T Consensus       195 -~LaSgS~D~TIkIWDl~TG----k~l~tL~g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          195 -ALLGTTIMNNIVIWNLKTG----QLLKKMHIDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             -EEEEEETTSEEEEEETTTC----CEEEEEECCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT
T ss_pred             -eEEEecCCCcEEEEECCCC----cEEEEEcCCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence             9999999999999999976    4455565543   356677899 577765            567889999999999


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeee-
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVR-  324 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~-  324 (389)
                      +++.+..+...-       ..+|...+.+..++  +.  ++++|+.|++|+|||+.+++.      +..+. +|...+. 
T Consensus       269 tgk~l~v~~~~~-------p~Gh~~~~lsg~~s--g~--~lASgS~DgTIkIWDl~tGk~------l~tL~-gH~~~vvs  330 (356)
T 2w18_A          269 TTLSVGVMLYCL-------PPGQAGRFLEGDVK--DH--CAAAILTSGTIAIWDLLLGQC------TALLP-PVSDQHWS  330 (356)
T ss_dssp             TTEEEEEEEECC-------CTTCCCCEEEEEEE--TT--EEEEEETTSCEEEEETTTCSE------EEEEC-CC--CCCC
T ss_pred             CCEEEEEEEeec-------cCCCcceeEccccC--CC--EEEEEcCCCcEEEEECCCCcE------EEEec-CCCCCeEE
Confidence            998877653100       00144444444444  55  789999999999999999887      67775 8876655 


Q ss_pred             eccCCCcccCCCCCCCceeEEEecCCCeEEEEec
Q 016457          325 SVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                      .+         +|||||++|+||+.|++|+||++
T Consensus       331 ~v---------afSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FV---------KWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EE---------EECSSSSEEEEECTTSCEEEEEE
T ss_pred             EE---------EECCCCCEEEEEECCCcEEEecC
Confidence            57         99999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.5e-33  Score=242.28  Aligned_cols=249  Identities=14%  Similarity=0.114  Sum_probs=186.2

Q ss_pred             EEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEE-Ee
Q 016457           64 LYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLL-AA  142 (389)
Q Consensus        64 iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  142 (389)
                      ||++.+.+++..+..|...|.+++|+|++  ++|++|+.++ +++|++.+++.......+  .+..+++.+.++.++ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg--~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ--SCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             ----------------CCCCCEEEECTTS--SEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEEC
T ss_pred             cccccccCCccccccCCCceEEEEECCCC--CEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEE
Confidence            56677777887888999999999999999  7999888775 789999888776655543  577888888888774 45


Q ss_pred             ecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEE
Q 016457          143 GCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGF  222 (389)
Q Consensus       143 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (389)
                      +.|+.|++||+++++.+..+.  +...|.++.++++   .++++ .++.|++||+.+..   ..+..+..   +...+++
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~---~~~~~~~~---~~~~~~~  145 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPW---KRITDDIR---FGGVCEF  145 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTC---CBSSCCEE---EEEEEEE
T ss_pred             CCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCc---eeeEEecc---CCceEEE
Confidence            668999999999999998886  6779999999986   34444 37899999999541   22222222   4445566


Q ss_pred             ecCCCcEEEE--EecCCcEEEEEcCCCce----------------eEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          223 FGETNKHLWC--LTHIETLSIWDWKDGQN----------------VASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       223 ~~~~~~~l~~--~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                      + +  .++++  ++.||.|++||+.+++.                +..+.+            |...|.+++|+|+++  
T Consensus       146 s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~------------h~~~v~~~~~s~~g~--  208 (355)
T 3vu4_A          146 S-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA------------HTNPIKMVRLNRKSD--  208 (355)
T ss_dssp             E-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECC------------CSSCEEEEEECTTSS--
T ss_pred             E-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc------------cCCceEEEEECCCCC--
Confidence            6 3  45655  57899999999997651                445554            779999999999999  


Q ss_pred             EEEEecCCce-EEEEEeccCCccccCCCeEEEecc-cceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          285 WVIGGTGAGT-VGYFPVNYGGAATIGPPEAVLVGG-HTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       285 ~l~~g~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +|++|+.||+ |++||+.+++.      +..+..+ |...|.++         +|+|++++|++++.||+|++|++...
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~------~~~~~~g~h~~~v~~~---------~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVL------VREFRRGLDRADVVDM---------KWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCE------EEEEECTTCCSCEEEE---------EECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcE------EEEEEcCCCCCcEEEE---------EECCCCCEEEEEECCCEEEEEEccCC
Confidence            8999999998 99999998876      6777645 99999999         99999999999999999999999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-33  Score=242.11  Aligned_cols=261  Identities=12%  Similarity=0.033  Sum_probs=201.7

Q ss_pred             CccccCCCCeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCC---------Cceeeeeec-CCC
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV---------TGQYSGECK-GHS   80 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~---------~~~~~~~~~-~~~   80 (389)
                      ..++++.|++|++||+..  .+..+. ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. +|.
T Consensus        50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  125 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA  125 (343)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred             EEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence            467899999999999863  444443 567888899998   9999999999999765         444344443 677


Q ss_pred             CcEEEEEEeC--CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCc
Q 016457           81 STVNQISFSG--PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        81 ~~v~~i~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      +.|.+++|+|  ++  +++++++.||+|++||+++++.+.....+ ...|.+++|+|++..+++++.||.|++||+++++
T Consensus       126 ~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          126 NEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             SCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            8999999999  88  79999999999999999999987766444 5579999999999999999999999999999998


Q ss_pred             ee-eeeeec-ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCcee--eEEEecCCCcEEEEE
Q 016457          158 QV-ACLEES-HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVG--KVGFFGETNKHLWCL  233 (389)
Q Consensus       158 ~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~  233 (389)
                      .+ ..+. . |..+|++++|+|++. +|++++ ++.|++||+++.... ..+..+..+...+.  +++|+ +++++|+++
T Consensus       204 ~~~~~~~-~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~l~~~  278 (343)
T 3lrv_A          204 QASSRFP-VDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDID-DSGKNMIAY  278 (343)
T ss_dssp             SCCEECC-CCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEEC-TTSSEEEEE
T ss_pred             CCccEEe-ccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccceEEEEC-CCCCEEEEe
Confidence            87 7777 5 999999999999995 999999 559999999965321 11222222333443  59999 788999999


Q ss_pred             ec-CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC---CCCeEEEEEecCCceEEEEEecc
Q 016457          234 TH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG---EGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       234 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      +. |+.|++|++.........                .++..+.|.+   +..  .+++++.||.+.++-...
T Consensus       279 s~~d~~i~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          279 SNESNSLTIYKFDKKTKNWTK----------------DEESALCLQSDTADFT--DMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             ETTTTEEEEEEECTTTCSEEE----------------EEEEECCC----CCCC--EEEEEEETTEEEEEEECS
T ss_pred             cCCCCcEEEEEEcccccceEe----------------cCceeEecCccccccc--eeEEEecCCceEEEEecC
Confidence            98 999999999765433222                3466778888   666  678888999998885543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.8e-33  Score=246.77  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=179.7

Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCcee-----eeeecCCCCcEEEEEEeC--------CCCCCEEEEEecCCeEEEEEccC
Q 016457           47 KNDWSLMAVSLSTNVVKLYSPVTGQY-----SGECKGHSSTVNQISFSG--------PSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        47 ~~~~~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~i~~~~--------~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      .+++.+||+|+.|++|+|||..+++.     +..+.+|.+.|++++|+|        ++  ++|+||+.|++|+|||+.+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~--~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE--QVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE--EEEEEEETTSEEEEEEEET
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC--CEEEEEECCCeEEEEECCC
Confidence            34556899999999999999988754     345789999999999998        56  7999999999999999999


Q ss_pred             CeEEEEEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCceeeeee------------------------ecccC
Q 016457          114 FHEVWSVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACLE------------------------ESHVE  168 (389)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------~~~~~  168 (389)
                      +.++..+..|...+.+++|+|++. .+++++.|+.|++||+++++......                        .+|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            998888888999999999999886 57777889999999998875432211                        25777


Q ss_pred             CeeEEEEe-cCCCCeEEEEeCCCcEEEEecCCCCCCCcc--------------ceeeeccCCceeeEEEecC-CCcEEEE
Q 016457          169 DVTQVHFV-PNNQNKVVSASVDGLICTFDTGGDINDDDL--------------LESVINVGTSVGKVGFFGE-TNKHLWC  232 (389)
Q Consensus       169 ~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~~~~~~i~~~~~~~~-~~~~l~~  232 (389)
                      .+.++.|. |++. .+++++.|+.+++||+.++......              ...............++++ ++.++++
T Consensus       256 ~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          256 SLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             cceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            89999997 6775 9999999999999999854311100              0001111122334445544 4456677


Q ss_pred             EecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          233 LTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++.|+.|++||+.+++....+..            |..+|.+++|+|+|+  +||+++.+| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~~------------~~~~V~svafspdG~--~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPIQ------------LGMPIVDFCWHQDGS--HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEEE------------CSSCEEEEEECTTSS--EEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCCCcEEEEecC------------CCCcEEEEEEcCCCC--EEEEEeCCC-eEEEEEe
Confidence            88899999999999988877766            668999999999999  889998776 6666654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=245.87  Aligned_cols=240  Identities=13%  Similarity=0.044  Sum_probs=198.8

Q ss_pred             ceEEEeecCCCCeE-EEEecCCeEEEEeCC--Cceeeeeec--CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC
Q 016457           40 YVFEIVPKNDWSLM-AVSLSTNVVKLYSPV--TGQYSGECK--GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        40 ~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      .|.+++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|.+++|+|++  .+|++|+.||.|++|++.++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~~g~v~~~~~~~~  181 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD--TTVIIADKFGDVYSIDINSI  181 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS--SEEEEEETTSEEEEEETTSC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC--CEEEEEeCCCcEEEEecCCc
Confidence            69999999999996 899999999999999  888888776  577899999999999  79999999999999999887


Q ss_pred             eEEE----EEEcCCCCeEEEEEeCC---CCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          115 HEVW----SVTAGSQEIFCFSFGGS---TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       115 ~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      +...    .+.+|...|++++|+|+   +..+++++.|+.|++||+++++.+..+..+|...|.+++|+ ++. +|++++
T Consensus       182 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~  259 (450)
T 2vdu_B          182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-LLLSAG  259 (450)
T ss_dssp             CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-EEEEEE
T ss_pred             ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-EEEEEe
Confidence            6544    77889999999999998   88899999999999999999988877444899999999999 885 999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeee-------------------------ccCCceeeEEEecCCCcEEEEEe-cCCcEEE
Q 016457          188 VDGLICTFDTGGDINDDDLLESVI-------------------------NVGTSVGKVGFFGETNKHLWCLT-HIETLSI  241 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i  241 (389)
                      .|+.|++||++++.    .+..+.                         .....+..++|+ +++.+|++++ .++.|++
T Consensus       260 ~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          260 GDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS-KNLPFVAFFVEATKCIII  334 (450)
T ss_dssp             SSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC-SSSSEEEEEETTCSEEEE
T ss_pred             CCCeEEEEECCCCc----EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe-CCCCEEEEEECCCCeEEE
Confidence            99999999999653    222222                         224568899999 6788898888 8999999


Q ss_pred             EEc--CCC---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC------CceEEEEEeccC
Q 016457          242 WDW--KDG---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG------AGTVGYFPVNYG  303 (389)
Q Consensus       242 ~d~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~------dg~i~i~~~~~~  303 (389)
                      |++  .++   +.+..+..            | ..+.+++|+|++  +++++++.      +..|.+|.+...
T Consensus       335 w~~~~~~~~~l~~~~~~~~------------~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          335 LEMSEKQKGDLALKQIITF------------P-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEECSSSTTCEEEEEEEEC------------S-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEeccCCCCceeeccEecc------------C-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEcC
Confidence            999  555   45555554            4 789999999943  35555443      456899987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.5e-31  Score=236.40  Aligned_cols=263  Identities=10%  Similarity=0.050  Sum_probs=217.5

Q ss_pred             ccccCCCCeEEEEecCc--eeee-----eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE
Q 016457           14 SQSCDNVNSIKRFGLKN--SIQT-----NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ   85 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--~~~~-----~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~   85 (389)
                      .++++.++.|++||+..  ....     +.+ ...|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+
T Consensus       137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  216 (433)
T 3bws_A          137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI  216 (433)
T ss_dssp             EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred             EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence            34566788999999863  3331     223 568999999999999999999999999999999999999889999999


Q ss_pred             EEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee--------cCCeEEEEECcCC
Q 016457           86 ISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG--------CGSQIQFWDWRNK  156 (389)
Q Consensus        86 i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~  156 (389)
                      ++|+|++  ..+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||++++
T Consensus       217 ~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          217 LLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            9999998  566 45558999999999999998887764 5699999999999999988        4789999999998


Q ss_pred             ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-
Q 016457          157 KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-  235 (389)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-  235 (389)
                      +.+..+.  +...+.+++|+|+++.++++++.++.|++||+.++.     ......+...+..++|+ ++++++++++. 
T Consensus       294 ~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~  365 (433)
T 3bws_A          294 KLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQKSIPVFDKPNTIALS-PDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EEEEEECSSSEEEEEEC-TTSSEEEEEECC
T ss_pred             cEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EEEEecCCCCCCeEEEc-CCCCEEEEEecC
Confidence            8877764  667899999999996466777899999999998542     22333467789999999 77788887776 


Q ss_pred             --------------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEEe
Q 016457          236 --------------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPV  300 (389)
Q Consensus       236 --------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~  300 (389)
                                    ||.|++||+.+++.+..+..             ...+.+++|+|+++  +|++++ .|+.|++|++
T Consensus       366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-------------~~~~~~~~~s~dg~--~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-------------GNQPTGLDVSPDNR--YLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-------------SSSEEEEEECTTSC--EEEEEETTTTEEEEEEE
T ss_pred             CCccccccccccccceEEEEEECCCCcEEEEecC-------------CCCCceEEEcCCCC--EEEEEECCCCeEEEEEe
Confidence                          56999999999988887764             25689999999998  666655 5999999998


Q ss_pred             cc
Q 016457          301 NY  302 (389)
Q Consensus       301 ~~  302 (389)
                      ..
T Consensus       431 ~~  432 (433)
T 3bws_A          431 DG  432 (433)
T ss_dssp             TT
T ss_pred             cC
Confidence            63

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1.3e-30  Score=238.54  Aligned_cols=308  Identities=8%  Similarity=-0.021  Sum_probs=239.0

Q ss_pred             cccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeC--CCceeeeeecCCCCcEEEEEEeC
Q 016457           15 QSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSP--VTGQYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~--~~~~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .+.+.+++|.+||..  +.+.++.....+.+++|+|||++|++++.++.|.+||+  .+++.+..+. +...+..++|+|
T Consensus       153 vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp  231 (543)
T 1nir_A          153 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSK  231 (543)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECC
T ss_pred             EEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCC
Confidence            345678999999985  46677764334899999999999999999999999999  8888888887 455689999999


Q ss_pred             ----CCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcC-----------CCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457           91 ----PSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAG-----------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW  153 (389)
Q Consensus        91 ----~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~  153 (389)
                          ++  +++++++ .+++|.+||..+++++..+..+           ...+.++.++|+++.++++.. ++.|.+||+
T Consensus       232 ~~~~dg--~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          232 FKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             STTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             CcCCCC--CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence                98  6888887 5899999999999999988753           237889999998887776665 899999999


Q ss_pred             cCCceee--eeeecccCCeeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeeec----cCCceeeEEEecCC
Q 016457          154 RNKKQVA--CLEESHVEDVTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVIN----VGTSVGKVGFFGET  226 (389)
Q Consensus       154 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~  226 (389)
                      .+.+.+.  .+  .+...+..+.|+|+++ +++ ++..+++|.+||+.+++    .+..+..    |......+ ++|+.
T Consensus       310 ~~~~~l~~~~i--~~~~~~~~~~~spdg~-~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          310 KDIDNLTVTSI--GAAPFLHDGGWDSSHR-YFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             TTSSSCEEEEE--ECCSSCCCEEECTTSC-EEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             cCCCcceeEEe--ccCcCccCceECCCCC-EEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCC
Confidence            8876544  44  3667788999999997 555 55568999999999653    3333332    33222222 35344


Q ss_pred             CcEEEEEe-cCCcEEEEEcCC-------CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-------C
Q 016457          227 NKHLWCLT-HIETLSIWDWKD-------GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-------G  291 (389)
Q Consensus       227 ~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-------~  291 (389)
                      +.+++++. .|++|.+||+.+       .++++++..            |...+..++++|+++  +|++++       .
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~------------~g~~~~~v~~~pdg~--~l~v~~~~~~~~~~  447 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG------------QGGGSLFIKTHPKSS--HLYVDTTFNPDARI  447 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC------------SCSCCCCEECCTTCC--EEEECCTTCSSHHH
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc------------CCCCceEEEcCCCCC--cEEEecCCCCCccc
Confidence            66666665 579999999988       788898887            557788999999999  667765       2


Q ss_pred             CceEEEEEeccCCccccCCCe-EEEe-------cccceeeeeccCCCcccCCCCCCCceeEEEe-----cCCCeEEEEec
Q 016457          292 AGTVGYFPVNYGGAATIGPPE-AVLV-------GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-----GEDGRLCCWLS  358 (389)
Q Consensus       292 dg~i~i~~~~~~~~~~~~~~~-~~~~-------~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-----~~dg~v~iW~~  358 (389)
                      +++|.+||+.+++.      . ..+.       ..+...+..+         +|+|+|++|+.+     +.|+.|.|||.
T Consensus       448 ~~~v~v~d~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          448 SQSVAVFDLKNLDA------KYQVLPIAEWADLGEGAKRVVQP---------EYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             HTCEEEEETTCTTS------CCEEECHHHHHCCCSSCCEEEEE---------EECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CceEEEEECCCCCC------CeEEeechhhcccCCCCCceEec---------cCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            67999999999875      2 2321       1456778888         999999998865     35899999999


Q ss_pred             cCCc
Q 016457          359 DDSS  362 (389)
Q Consensus       359 ~~~~  362 (389)
                      .+..
T Consensus       513 ~t~~  516 (543)
T 1nir_A          513 KTLK  516 (543)
T ss_dssp             TTTE
T ss_pred             CCce
Confidence            8773

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=3.8e-30  Score=214.90  Aligned_cols=253  Identities=14%  Similarity=0.101  Sum_probs=177.8

Q ss_pred             CCCeEEEEecCc-----eeeeeec-CcceEEEeecCCCC-eEEEEecCC---eEEEE--eCCC---ceeeeeecCCCCcE
Q 016457           19 NVNSIKRFGLKN-----SIQTNFG-DDYVFEIVPKNDWS-LMAVSLSTN---VVKLY--SPVT---GQYSGECKGHSSTV   83 (389)
Q Consensus        19 ~~~~i~~w~~~~-----~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~---~i~iw--~~~~---~~~~~~~~~~~~~v   83 (389)
                      .+..|++|+...     .+++... ..+|..+.+.||-. ++.++-.+=   .|+..  +.++   ++.+ .-.+|...|
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l-~s~g~~~~v  139 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL-LKSGNIKAV  139 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE-EEEEEEEEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE-EeCCCeEEE
Confidence            356899999753     4566666 66888888888653 333333211   11111  1110   1111 113355455


Q ss_pred             EEEEEeCCCCCCEEEEEe--cCCeEEEEEc-cCCeEEEEEEcCCCCeEEEEEeC---CCCeEEEeecCCeEEEEECcCCc
Q 016457           84 NQISFSGPSTPHVLHSCS--SDGTIRAWDT-RSFHEVWSVTAGSQEIFCFSFGG---STDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      ..+   +++  +++.+++  .|+.|++|++ .+++.+..+..|...++.++|+|   ++..+++++.|++|+|||+++++
T Consensus       140 ~~l---~~g--~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk  214 (356)
T 2w18_A          140 LGL---TKR--RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ  214 (356)
T ss_dssp             EEE---TTT--EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred             Eec---CCC--cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence            554   455  4555533  5999999999 45888889999999999999998   66889999999999999999999


Q ss_pred             eeeeeeeccc---CCeeEEEEecCCCCeE------------EEEeCCCcEEEEecCCCCCCCccceee-----eccCCce
Q 016457          158 QVACLEESHV---EDVTQVHFVPNNQNKV------------VSASVDGLICTFDTGGDINDDDLLESV-----INVGTSV  217 (389)
Q Consensus       158 ~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~i  217 (389)
                      .+.++. +|.   ..+.+++|+|++. ++            ++|+.|++|++||..++.    .+..+     .+|...+
T Consensus       215 ~l~tL~-g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk----~l~v~~~~~p~Gh~~~~  288 (356)
T 2w18_A          215 LLKKMH-IDDSYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTL----SVGVMLYCLPPGQAGRF  288 (356)
T ss_dssp             EEEEEE-CCC---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTTTE----EEEEEEECCCTTCCCCE
T ss_pred             EEEEEc-CCCcceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCE----EEEEEEeeccCCCccee
Confidence            999997 443   4677889999985 55            568889999999998653    22211     1333333


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee-eecccCCCCeEEEEEecCCceEE
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV-DCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      .+..++   +.++++++.|++|+|||+.++++++++.+            |...+. .++|+|+|+  +|++|+.|++|+
T Consensus       289 lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~g------------H~~~vvs~vafSPDG~--~LaSGS~D~TIk  351 (356)
T 2w18_A          289 LEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPP------------VSDQHWSFVKWSGTDS--HLLAGQKDGNIF  351 (356)
T ss_dssp             EEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECC------------C--CCCCEEEECSSSS--EEEEECTTSCEE
T ss_pred             EccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecC------------CCCCeEEEEEECCCCC--EEEEEECCCcEE
Confidence            333333   56899999999999999999999999986            546555 589999999  899999999999


Q ss_pred             EEEe
Q 016457          297 YFPV  300 (389)
Q Consensus       297 i~~~  300 (389)
                      |||+
T Consensus       352 lWd~  355 (356)
T 2w18_A          352 VYHY  355 (356)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=6.8e-29  Score=227.28  Aligned_cols=290  Identities=11%  Similarity=0.032  Sum_probs=227.2

Q ss_pred             eecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc--cCCeEEEEEEc
Q 016457           45 VPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT--RSFHEVWSVTA  122 (389)
Q Consensus        45 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~  122 (389)
                      +|+|++.++++++.+++|.+||..+++++..+..+.. +..++|+|++  ++|++++.|++|++||+  .+++.+.++..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence            4889999999999999999999999999999884333 8999999999  79999999999999999  88999988885


Q ss_pred             CCCCeEEEEEeC----CCCeEEEeec-CCeEEEEECcCCceeeeeee-c--------ccC-CeeEEEEecCCCCeEEEEe
Q 016457          123 GSQEIFCFSFGG----STDYLLAAGC-GSQIQFWDWRNKKQVACLEE-S--------HVE-DVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       123 ~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-~--------~~~-~v~~~~~~~~~~~~l~~~~  187 (389)
                       ...+..++|+|    +++++++++. ++.|.+||..+++++..+.. +        |.. .+..+.++|+++.++++..
T Consensus       221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence             46789999999    9999999886 89999999999999888761 1        222 6889999998876788888


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          188 VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      .++.|.+||+.+...   .......+...+..++|+ +++++++++ ..+++|.+||+.+++++..+.....        
T Consensus       300 ~~g~i~vvd~~~~~~---l~~~~i~~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~--------  367 (543)
T 1nir_A          300 ETGKVLLVNYKDIDN---LTVTSIGAAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT--------  367 (543)
T ss_dssp             TTTEEEEEECTTSSS---CEEEEEECCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------
T ss_pred             CCCeEEEEEecCCCc---ceeEEeccCcCccCceEC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC--------
Confidence            899999999985421   111233456778899999 677766655 4588999999999998888764321        


Q ss_pred             CCCCceeeecccCCCCeEEEEEec-CCceEEEEEeccCCc-cccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGA-ATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                      +|......+ ++|++.. +++++. .|++|.+|++.+... ...++.+..+. +|...+..+         +|+|+|++|
T Consensus       368 ph~g~g~~~-~~p~~g~-~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v---------~~~pdg~~l  435 (543)
T 1nir_A          368 PHPGRGANF-VHPKYGP-VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFI---------KTHPKSSHL  435 (543)
T ss_dssp             BCCTTCEEE-EETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCE---------ECCTTCCEE
T ss_pred             CCCCCCccc-CCCCCcc-EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEE---------EcCCCCCcE
Confidence            143333333 4677554 456664 689999999987321 11133467776 777777777         999999999


Q ss_pred             EEec-------CCCeEEEEeccCCc
Q 016457          345 WTGG-------EDGRLCCWLSDDSS  362 (389)
Q Consensus       345 ~s~~-------~dg~v~iW~~~~~~  362 (389)
                      ++++       .+++|.+||+++..
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             EEecCCCCCcccCceEEEEECCCCC
Confidence            9987       27899999999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=6.7e-29  Score=220.79  Aligned_cols=275  Identities=10%  Similarity=0.007  Sum_probs=211.5

Q ss_pred             eEEEEec--C--cee--eeeec-CcceEEEeecC--------------CCCeEEEEecC------CeEEEEeCCCceeee
Q 016457           22 SIKRFGL--K--NSI--QTNFG-DDYVFEIVPKN--------------DWSLMAVSLST------NVVKLYSPVTGQYSG   74 (389)
Q Consensus        22 ~i~~w~~--~--~~~--~~~~~-~~~v~~~~~~~--------------~~~~l~~~~~d------~~i~iw~~~~~~~~~   74 (389)
                      .|++||+  .  +.+  ..+.+ ...+..+++++              .+..++.++.+      +.|++||+. +....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence            8999998  4  333  33555 66677777764              15566666654      799999997 45567


Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCC---eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEe-ecCC--eE
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDG---TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAA-GCGS--QI  148 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i  148 (389)
                      .+.+|...+.+++|+|++  +.|++++.++   .|++||+.+++.. .+..+...+.+++|+|++..|+.+ +.++  .|
T Consensus       173 ~l~~~~~~v~~~~~Spdg--~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDG--SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             EEEEESSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             EEeCCCCcceeeEEcCCC--CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            777899999999999999  7999999875   9999999988775 566777899999999999988854 4444  59


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CC--cEEEEecCCCCCCCccceeeeccCCceeeEEEecC
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DG--LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE  225 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (389)
                      ++||+++++. ..+. .|...+.+++|+|+++ .|++++. ++  .|++||+.++.     ...+..+...+..++|+ +
T Consensus       250 ~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~s-p  320 (415)
T 2hqs_A          250 YVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVS-S  320 (415)
T ss_dssp             EEEETTTCCE-EECC-CCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEEC-T
T ss_pred             EEEECCCCCE-EeCc-CCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC-----EEEEecCCCcccCeEEC-C
Confidence            9999998776 4555 6888899999999996 7777775 44  67778888542     33444566788899999 7


Q ss_pred             CCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc---eEEEEE
Q 016457          226 TNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG---TVGYFP  299 (389)
Q Consensus       226 ~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg---~i~i~~  299 (389)
                      ++++|++++.+   ..|++||+.+++.. .+..            + ..+.+++|+|+|+  +|++++.++   .|++||
T Consensus       321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~------------~-~~~~~~~~spdg~--~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          321 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS------------T-FLDETPSLAPNGT--MVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC------------S-SSCEEEEECTTSS--EEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEECcCCceEEEEEECCCCCEE-EecC------------C-CCcCCeEEcCCCC--EEEEEEcCCCccEEEEEE
Confidence            78888887764   58999999988763 3332            3 3788999999999  667776666   799999


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                      +..+..       ..+. +|.+.|.++         +|+|...
T Consensus       385 ~~g~~~-------~~l~-~~~~~v~~~---------~~~~~~~  410 (415)
T 2hqs_A          385 TDGRFK-------ARLP-ATDGQVKFP---------AWSPYLH  410 (415)
T ss_dssp             TTSCCE-------EECC-CSSSEEEEE---------EECCCCC
T ss_pred             CCCCcE-------EEee-CCCCCCcCC---------ccccccc
Confidence            875543       6665 899999999         7777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=9.3e-30  Score=226.29  Aligned_cols=278  Identities=12%  Similarity=0.089  Sum_probs=215.0

Q ss_pred             cceEEEeecCCCC-eEEEEe----cCC----eEEEEeC--CCceee--eeecCCCCcEEEEEEeCC--------------
Q 016457           39 DYVFEIVPKNDWS-LMAVSL----STN----VVKLYSP--VTGQYS--GECKGHSSTVNQISFSGP--------------   91 (389)
Q Consensus        39 ~~v~~~~~~~~~~-~l~~~~----~d~----~i~iw~~--~~~~~~--~~~~~~~~~v~~i~~~~~--------------   91 (389)
                      ..+...+|.+.|. ++++|+    .+|    .|+|||+  .+++.+  ..+.+|...+..+++.+.              
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            3677788888884 565776    367    8999999  888877  458888888888877641              


Q ss_pred             CCCCEEEEEecC------CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC---eEEEEECcCCceeeee
Q 016457           92 STPHVLHSCSSD------GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS---QIQFWDWRNKKQVACL  162 (389)
Q Consensus        92 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~  162 (389)
                      +  ..++.++.+      +.|++||+.. .....+..|...+.+++|+|+++.+++++.++   .|++||+++++.. .+
T Consensus       143 ~--~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          143 R--TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             T--CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             C--CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence            3  466666654      7999999974 45667777889999999999999999998864   9999999988775 44


Q ss_pred             eecccCCeeEEEEecCCCCeEE-EEeCCCc--EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CC-
Q 016457          163 EESHVEDVTQVHFVPNNQNKVV-SASVDGL--ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IE-  237 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~-  237 (389)
                      . .|...+.+++|+|+++ .|+ +++.++.  |++||+.++.     ...+..+...+..++|+ ++++.|++++. ++ 
T Consensus       219 ~-~~~~~~~~~~~spdg~-~la~~~~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          219 A-SFPRHNGAPAFSPDGS-KLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGR  290 (415)
T ss_dssp             E-CCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCC-----EEECCCCSSCEEEEEEC-TTSSEEEEEECTTSS
T ss_pred             e-cCCCcccCEEEcCCCC-EEEEEEecCCCceEEEEECCCCC-----EEeCcCCCCcccceEEC-CCCCEEEEEECCCCC
Confidence            4 5788899999999996 666 6666655  9999998642     35566677889999999 77888887776 44 


Q ss_pred             -cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC---ceEEEEEeccCCccccCCCeE
Q 016457          238 -TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA---GTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       238 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~  313 (389)
                       .|.+||+.+++.. .+..            +...+..++|+|+|+  +|++++.+   +.|++||+.+++.       .
T Consensus       291 ~~i~~~d~~~~~~~-~l~~------------~~~~~~~~~~spdG~--~l~~~~~~~g~~~i~~~d~~~~~~-------~  348 (415)
T 2hqs_A          291 PQVYKVNINGGAPQ-RITW------------EGSQNQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGV-------Q  348 (415)
T ss_dssp             CEEEEEETTSSCCE-ECCC------------SSSEEEEEEECTTSS--EEEEEEECSSCEEEEEEETTTCCE-------E
T ss_pred             cEEEEEECCCCCEE-EEec------------CCCcccCeEECCCCC--EEEEEECcCCceEEEEEECCCCCE-------E
Confidence             6888898877643 3332            446788999999999  66666543   6899999998765       4


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC---eEEEEeccCC
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG---RLCCWLSDDS  361 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~v~iW~~~~~  361 (389)
                      .+. .|. .+.++         +|+|||++|++++.|+   .|++|+++..
T Consensus       349 ~l~-~~~-~~~~~---------~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          349 VLS-STF-LDETP---------SLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             ECC-CSS-SCEEE---------EECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             Eec-CCC-CcCCe---------EEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            444 443 67777         9999999999988777   7999998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=3.5e-27  Score=203.88  Aligned_cols=290  Identities=10%  Similarity=0.046  Sum_probs=203.1

Q ss_pred             eecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccCCeE-EEEEE
Q 016457           45 VPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRSFHE-VWSVT  121 (389)
Q Consensus        45 ~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~  121 (389)
                      .|.++++ .+++++.++.|.+||..+++....+..+...+ .++|+|++  +++++++. ++.|.+||+.+++. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            4555554 46677779999999999999888877766777 99999999  55655554 88999999999887 77777


Q ss_pred             cCCCCeEEEEEeCCCCeEEEeecC-C--eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc-EEEEec
Q 016457          122 AGSQEIFCFSFGGSTDYLLAAGCG-S--QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL-ICTFDT  197 (389)
Q Consensus       122 ~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~  197 (389)
                      .+..+..+++|+|+++.++++..+ +  .|.+||+.+++.+..+.  ......+++|+|+++.++++...++. |.+|++
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            776666669999999999855544 3  99999999998888776  45567999999999645555566688 999999


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEE-EEecCCcEEEEEcCCCce---eEEeecccccccCCccCCCCCcee
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLW-CLTHIETLSIWDWKDGQN---VASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      ...................+..++|+ +++++++ ++..++.|.+||+.+++.   +..+..             ...+.
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~  224 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-------------NNLPG  224 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------------SSCCC
T ss_pred             CCCCcEeecCCccccCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-------------CCCCc
Confidence            84321111102223445567899999 6777554 455688999999998887   665553             25678


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEE-ecCCCe
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWT-GGEDGR  352 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~  352 (389)
                      .++|+|+|+.+ +++...++.|.+||..+++...    +..+. .+ -.+..- +......++|+|||++|+. +..++.
T Consensus       225 ~~~~spdg~~l-~v~~~~~~~i~~~d~~~~~~~~----~~~~~-~~-~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~  296 (331)
T 3u4y_A          225 TIVVSRDGSTV-YVLTESTVDVFNFNQLSGTLSF----VKSFG-HG-LLIDPR-PLFGANQMALNKTETKLFISANISRE  296 (331)
T ss_dssp             CEEECTTSSEE-EEECSSEEEEEEEETTTTEEEE----EEEEE-CC-CCCCCG-GGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred             eEEECCCCCEE-EEEEcCCCEEEEEECCCCceee----ecccc-cc-cccCCC-CcccccceEECCCCCEEEEecCCCCc
Confidence            89999999843 2344467889999998876411    11111 11 000000 0000011289999998755 556779


Q ss_pred             EEEEeccCC
Q 016457          353 LCCWLSDDS  361 (389)
Q Consensus       353 v~iW~~~~~  361 (389)
                      |.+|++...
T Consensus       297 v~v~d~~~~  305 (331)
T 3u4y_A          297 LKVFTISGK  305 (331)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEEecCC
Confidence            999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=4.7e-26  Score=198.54  Aligned_cols=272  Identities=11%  Similarity=0.082  Sum_probs=211.4

Q ss_pred             CcceEEEeecCCCCeEEEEec-------CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLS-------TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|++. .++++...++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQ-TLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTT-EEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCC-EEEEEecCCCEEEEEe
Confidence            567889999999998888874       56899999999988888764 34578899999983 2455556689999999


Q ss_pred             ccCCeEEEEEEcCCCC---------eEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC
Q 016457          111 TRSFHEVWSVTAGSQE---------IFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  179 (389)
                      +.+++.+..+..+...         +.+++|+|+++.+++++.  ++.|.+||+.+++.+..+. .+...+.+++|+|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCC
Confidence            9999998888875322         789999999998888873  7899999999998888876 456668999999999


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCCccceeeec----cCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCCceeEEee
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDDDLLESVIN----VGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~  254 (389)
                      + .+++++.++.|.+||+.++.    .......    +...+..++|+ ++++.+++++. ++.|.+||+.+++.+..+.
T Consensus       197 ~-~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          197 K-RLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLD-TARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             T-EEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEE-TTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             C-EEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            6 89999999999999998652    2323222    34467789999 56666655554 5899999999998888776


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  334 (389)
                      ..              ....++|+|+++.+ +++...++.|.+||..+++.      +..+. . ...+.++        
T Consensus       271 ~~--------------~~~~~~~s~dg~~l-~v~~~~~~~v~~~d~~~~~~------~~~~~-~-~~~~~~~--------  319 (353)
T 3vgz_A          271 AP--------------ESLAVLFNPARNEA-YVTHRQAGKVSVIDAKSYKV------VKTFD-T-PTHPNSL--------  319 (353)
T ss_dssp             CS--------------SCCCEEEETTTTEE-EEEETTTTEEEEEETTTTEE------EEEEE-C-CSEEEEE--------
T ss_pred             cC--------------CCceEEECCCCCEE-EEEECCCCeEEEEECCCCeE------EEEEe-c-CCCCCeE--------
Confidence            42              12568999999843 34555789999999988775      45554 2 3356777        


Q ss_pred             CCCCCCceeEEEecCC
Q 016457          335 RPAQSHGIFGWTGGED  350 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~d  350 (389)
                       +|+|||++|+.+..+
T Consensus       320 -~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          320 -ALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -EECTTSCEEEEEEEC
T ss_pred             -EEcCCCCEEEEEEcc
Confidence             999999977776554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=9e-27  Score=223.04  Aligned_cols=285  Identities=12%  Similarity=0.086  Sum_probs=210.8

Q ss_pred             CcceEEEeecCCCCeEEEEec-CC-----eEEEEeCCCceeeeeecCCC------------------------CcEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLS-TN-----VVKLYSPVTGQYSGECKGHS------------------------STVNQIS   87 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~------------------------~~v~~i~   87 (389)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+.                        ..|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457899999999999999998 88     99999999988766665443                        2388999


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      |+|++  ++|++++. +.|.+||+.++.  ....+..+...+.+++|+|+++.++.++ ++.|++||+.+++...... .
T Consensus       116 ~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-~  190 (741)
T 2ecf_A          116 WSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-D  190 (741)
T ss_dssp             ECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC-C
T ss_pred             ECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc-C
Confidence            99999  78888876 899999998872  3445666778899999999999888776 5799999999877655443 2


Q ss_pred             ccCC----------------eeEEEEecCCCCeEEEEeCCC---------------------------------cEEEEe
Q 016457          166 HVED----------------VTQVHFVPNNQNKVVSASVDG---------------------------------LICTFD  196 (389)
Q Consensus       166 ~~~~----------------v~~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~d  196 (389)
                      +...                +..++|+|+|+ .|++++.|+                                 .|.+||
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            3222                47899999996 888887665                                 788999


Q ss_pred             cCC-CCCCCccceeee---ccCCceeeEEEecCCCcEEEEEec-----CCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          197 TGG-DINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLTH-----IETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       197 ~~~-~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      +.+ +.     ...+.   .+...+..++| | +++.|++++.     +..|++||+.+++....+.....    .    
T Consensus       270 ~~~~~~-----~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~----~----  334 (741)
T 2ecf_A          270 PAEQAQ-----TQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP----T----  334 (741)
T ss_dssp             SSTTCC-----CEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS----S----
T ss_pred             CCCCCc-----eEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC----C----
Confidence            986 43     11111   36678899999 5 5666666553     56899999999987766654210    0    


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE-E
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW-T  346 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~-s  346 (389)
                      ....+..++|+|+|+  ++++++.||.++||.+....     . ...+. .|...|..+.        .|+|+|+.|+ +
T Consensus       335 ~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~~~~~-----~-~~~l~-~~~~~v~~~~--------~~s~dg~~l~~~  397 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGS--ILWSSERTGFQHLYRIDSKG-----K-AAALT-HGNWSVDELL--------AVDEKAGLAYFR  397 (741)
T ss_dssp             CCCCCSCCEECTTSC--EEEEECTTSSCEEEEECSSS-----C-EEESC-CSSSCEEEEE--------EEETTTTEEEEE
T ss_pred             cCCcCCceEECCCCe--EEEEecCCCccEEEEEcCCC-----C-eeeee-ecceEEEeEe--------EEeCCCCEEEEE
Confidence            001456889999998  78888899988888776321     1 24444 5666666651        4899998764 5


Q ss_pred             ecCCC--eEEEEeccC
Q 016457          347 GGEDG--RLCCWLSDD  360 (389)
Q Consensus       347 ~~~dg--~v~iW~~~~  360 (389)
                      ++.|+  .+++|+++.
T Consensus       398 ~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          398 AGIESARESQIYAVPL  413 (741)
T ss_dssp             ECSSCTTCBEEEEEET
T ss_pred             EeCCCCceEEEEEEEc
Confidence            55565  899999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=6.9e-27  Score=223.24  Aligned_cols=287  Identities=10%  Similarity=0.063  Sum_probs=204.7

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCC---cEEEEEEeCCCCCCEEEEEecC---------CeE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS---TVNQISFSGPSTPHVLHSCSSD---------GTI  106 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~d---------g~i  106 (389)
                      ..+.+++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|++  ++|++++.+         +.|
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg--~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR--EYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS--SEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC--CEEEEEecCccceeecceeeE
Confidence            34678999999998776 6799999999999988877777665   49999999999  789988764         788


Q ss_pred             EEEEccCCeEEEEEEc---CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC--------------
Q 016457          107 RAWDTRSFHEVWSVTA---GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED--------------  169 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------  169 (389)
                      .+||+.+++. ..+..   +...+..++|+|+++.++.++. +.|++||+.+++...... .+...              
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHT
T ss_pred             EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEE
Confidence            8999998876 33332   3334889999999999988876 899999999887665544 33332              


Q ss_pred             ----eeEEEEecCCCCeEEEEeCCC----------------------------------cEEEEecCCCCCCCccceeee
Q 016457          170 ----VTQVHFVPNNQNKVVSASVDG----------------------------------LICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       170 ----v~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~~~~  211 (389)
                          +.+++|+|+|+ .|++++.++                                  .|++||+.++.    ....+.
T Consensus       171 ~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~  245 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT----HDLEMM  245 (723)
T ss_dssp             TSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC----CCEECC
T ss_pred             eccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc----eeEEee
Confidence                37899999996 888877543                                  79999998653    112222


Q ss_pred             c------cCCceeeEEEecCCCcEEEEEecC----CcEEEEEcCCCceeEEeecccccccCCccCCCCCce----eeecc
Q 016457          212 N------VGTSVGKVGFFGETNKHLWCLTHI----ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF----VDCHY  277 (389)
Q Consensus       212 ~------~~~~i~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~  277 (389)
                      .      +...+..++|+ ++++++++....    ..|++||+.+++....+...           +...+    ..++|
T Consensus       246 ~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~  313 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-----------SEAWLHRQNEEPVF  313 (723)
T ss_dssp             CCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-----------CSSCCCCCCCCCEE
T ss_pred             CCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-----------cCCEEeccCCCceE
Confidence            2      25678899999 778887666533    57999999998876665432           22333    37899


Q ss_pred             cCCCCeEEEEEecCCc------eEEEEE-eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          278 PGEGENLWVIGGTGAG------TVGYFP-VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg------~i~i~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      +|+|+.++++++..++      .|++|| ..++..    .....+..++......+         +|+|||++|+..+.+
T Consensus       314 spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~~~---------~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          314 SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----DNIQSITSGDWDVTKIL---------AYDEKGNKIYFLSTE  380 (723)
T ss_dssp             CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----CCCCBSCCSSSCEEEEE---------EEETTTTEEEEEESS
T ss_pred             cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----cceeEeecCCeEEEeee---------EEcCCCCEEEEEEcC
Confidence            9999965444466677      566677 344330    00123322232222335         899999998765544


Q ss_pred             ---CeEEEEeccCC
Q 016457          351 ---GRLCCWLSDDS  361 (389)
Q Consensus       351 ---g~v~iW~~~~~  361 (389)
                         +.+++|+++..
T Consensus       381 ~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          381 DLPRRRQLYSANTV  394 (723)
T ss_dssp             SCTTCCEEEEECSS
T ss_pred             CCCcceEEEEEeCC
Confidence               88999998743

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.6e-25  Score=194.26  Aligned_cols=278  Identities=13%  Similarity=0.186  Sum_probs=190.3

Q ss_pred             eEEEEecCCeEEEEeCC-Cc--eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-CeEEEEEcc--CCe--EEEEEEcC
Q 016457           52 LMAVSLSTNVVKLYSPV-TG--QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-GTIRAWDTR--SFH--EVWSVTAG  123 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~-~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~  123 (389)
                      ++++++.++.|++|++. ++  +.+..+ .|...+.+++|+|++  ++|++++.+ +.|.+|++.  +++  .+..+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg--~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDK--RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTS--SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCC--CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            34444779999999985 33  333333 367789999999999  688888876 999999997  444  44556554


Q ss_pred             CCCeEEEEEeCCCCeEEEeec-CCeEEEEEC---cCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecC
Q 016457          124 SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW---RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTG  198 (389)
Q Consensus       124 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~  198 (389)
                       ..+.+++|+|++..+++++. ++.|.+||+   ...+.+..+.  ....+.+++|+|+++ .+++++ .++.|.+||+.
T Consensus        84 -~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           84 -GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNR-TLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             -SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCC-EEEEecCCCCEEEEEEec
Confidence             48899999999998888876 889999999   4444555554  345689999999996 666666 89999999998


Q ss_pred             CCCCCCccce--eee-ccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCC--Cce--eEEeecccccccCCccCCCCC
Q 016457          199 GDINDDDLLE--SVI-NVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKD--GQN--VASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       199 ~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~  270 (389)
                      +.... ....  ... .....+..++|+ +++++++++ ..++.|.+|++..  ++.  ...+.....      ......
T Consensus       160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~  231 (343)
T 1ri6_A          160 DDGHL-VAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE------NFSDTR  231 (343)
T ss_dssp             TTSCE-EEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT------TCCSCC
T ss_pred             CCCce-eeecccccccCCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc------cccccC
Confidence            52111 1111  122 234577889999 667766554 4789999999953  332  222221110      000124


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEEEEEecc--CCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY--GGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                      .+..++|+|+++.+ ++++..++.|.+|++..  +..    +.+..+. .+.. +..+         +|+|+|++|++++
T Consensus       232 ~~~~i~~s~dg~~l-~v~~~~~~~i~v~d~~~~~~~~----~~~~~~~-~~~~-~~~~---------~~s~dg~~l~~~~  295 (343)
T 1ri6_A          232 WAADIHITPDGRHL-YACDRTASLITVFSVSEDGSVL----SKEGFQP-TETQ-PRGF---------NVDHSGKYLIAAG  295 (343)
T ss_dssp             CEEEEEECTTSSEE-EEEETTTTEEEEEEECTTSCCE----EEEEEEE-CSSS-CCCE---------EECTTSSEEEEEC
T ss_pred             CccceEECCCCCEE-EEEecCCCEEEEEEEcCCCCce----EEeeeec-CCCc-cceE---------EECCCCCEEEEec
Confidence            56689999999842 34666899999999983  222    1123333 2222 6666         9999999888877


Q ss_pred             -CCCeEEEEeccC
Q 016457          349 -EDGRLCCWLSDD  360 (389)
Q Consensus       349 -~dg~v~iW~~~~  360 (389)
                       .|+.|.+|+++.
T Consensus       296 ~~~~~v~v~~~d~  308 (343)
T 1ri6_A          296 QKSHHISVYEIVG  308 (343)
T ss_dssp             TTTCEEEEEEEET
T ss_pred             CCCCeEEEEEEcC
Confidence             689999997763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=2.3e-25  Score=193.29  Aligned_cols=265  Identities=11%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             ccCCCCeEEEEecC--c---eeeeeecCcceEEEeecCCCCeEEEEecC-CeEEEEeCC--Cce--eeeeecCCCCcEEE
Q 016457           16 SCDNVNSIKRFGLK--N---SIQTNFGDDYVFEIVPKNDWSLMAVSLST-NVVKLYSPV--TGQ--YSGECKGHSSTVNQ   85 (389)
Q Consensus        16 s~~~~~~i~~w~~~--~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~--~~~--~~~~~~~~~~~v~~   85 (389)
                      +.+.++.|++|++.  .   .+..+.....+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+. .+..
T Consensus        10 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~   88 (343)
T 1ri6_A           10 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH   88 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred             eCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence            34678999999984  2   23333336788999999999999988876 999999987  554  344555444 7899


Q ss_pred             EEEeCCCCCCEEEEEe-cCCeEEEEEc---cCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcC-Ccee
Q 016457           86 ISFSGPSTPHVLHSCS-SDGTIRAWDT---RSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRN-KKQV  159 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~-~dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~  159 (389)
                      ++|+|++  ++|++++ .++.|.+||+   ...+.+..+..+ ..+.+++|+|+++.+++++ .++.|.+||+.+ ++..
T Consensus        89 ~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           89 ISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             EEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             EEEcCCC--CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            9999999  6676655 4889999999   444555555543 5689999999999998888 689999999987 5443


Q ss_pred             e----eeeecccCCeeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccceeeecc------CCceeeEEEecCCCc
Q 016457          160 A----CLEESHVEDVTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLESVINV------GTSVGKVGFFGETNK  228 (389)
Q Consensus       160 ~----~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~  228 (389)
                      .    .+.......+..++|+|+++ .++ ++..++.|.+||+................      ...+..++|+ ++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~-~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~  243 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT-PDGR  243 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC-TTSS
T ss_pred             eecccccccCCCCCcceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC-CCCC
Confidence            2    22212345788999999996 554 55588999999996321111112122111      2345679999 6666


Q ss_pred             EEE-EEecCCcEEEEEcCC--C--ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEEec
Q 016457          229 HLW-CLTHIETLSIWDWKD--G--QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPVN  301 (389)
Q Consensus       229 ~l~-~~~~d~~i~i~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~  301 (389)
                      +|+ +...++.|.+||+..  +  +.+..+..            + ..+..++|+|+++  +|++++ .++.|.+|+++
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------------~-~~~~~~~~s~dg~--~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPT------------E-TQPRGFNVDHSGK--YLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------------S-SSCCCEEECTTSS--EEEEECTTTCEEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecC------------C-CccceEEECCCCC--EEEEecCCCCeEEEEEEc
Confidence            666 455789999999982  2  33333332            2 3378999999998  555555 68999999765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=3.2e-26  Score=218.00  Aligned_cols=280  Identities=9%  Similarity=0.064  Sum_probs=205.8

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-----
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-----  113 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-----  113 (389)
                      ..|.+++|+|| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|++  +.|+++ .|+.|.+||+.+     
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccC
Confidence            46999999999 6666664 69999999998876544 4467778999999999  688885 689999999998     


Q ss_pred             CeEEEEEEcCCCC--------------eEEEEEeCCCCeEEEee---------------------------------cCC
Q 016457          114 FHEVWSVTAGSQE--------------IFCFSFGGSTDYLLAAG---------------------------------CGS  146 (389)
Q Consensus       114 ~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~  146 (389)
                      ++.......+...              +.+++|+|+++.|++++                                 .+.
T Consensus       156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            7766544443332              48899999999999987                                 346


Q ss_pred             eEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCC-----cEEEEecCCCCCCCccceeee--ccCC---
Q 016457          147 QIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDG-----LICTFDTGGDINDDDLLESVI--NVGT---  215 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~--~~~~---  215 (389)
                      .|.+||+.+++...... ..|...+.+++|+|+++ .|++++.++     .|++||+.++.    ....+.  ....   
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~----~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGR----FVRTLFVETDKHYVE  310 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCC----EEEEEEEEECSSCCC
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCc----eeeEEEEccCCCeEC
Confidence            89999999887654432 14667799999999996 888877775     89999998652    122221  1222   


Q ss_pred             ceeeEEEecC--CCcEEEEEecCCcEEEEEcC-CCceeEEeecccccccCCccCCCCCceee-ecccCCCCeEEEEEecC
Q 016457          216 SVGKVGFFGE--TNKHLWCLTHIETLSIWDWK-DGQNVASFENARSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTG  291 (389)
Q Consensus       216 ~i~~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~g~~  291 (389)
                      .+..++|+ +  ++++++++..++.+++|.+. ++..+..+..            +...+.. ++|+|+++.+ +++++.
T Consensus       311 ~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~------------~~~~v~~~~~~spdg~~l-~~~~~~  376 (706)
T 2z3z_A          311 PLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK------------GEWEVTNFAGFDPKGTRL-YFESTE  376 (706)
T ss_dssp             CCSCCEEC-TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC------------SSSCEEEEEEECTTSSEE-EEEESS
T ss_pred             ccCCceee-cCCCCEEEEEEccCCccEEEEEECCCCEEEecCC------------CCeEEEeeeEEcCCCCEE-EEEecC
Confidence            24678999 6  78899999999999999876 5666666654            4456666 7999999853 344445


Q ss_pred             Cc----eEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC----CeEEEEeccCC
Q 016457          292 AG----TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED----GRLCCWLSDDS  361 (389)
Q Consensus       292 dg----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iW~~~~~  361 (389)
                      ++    .|+.|++.+++.       ..+  .|...+.++         +|||||++|+....+    +.|++|+++..
T Consensus       377 ~~~~~~~l~~~d~~~~~~-------~~l--~~~~~~~~~---------~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          377 ASPLERHFYCIDIKGGKT-------KDL--TPESGMHRT---------QLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             SCTTCBEEEEEETTCCCC-------EES--CCSSSEEEE---------EECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             CCCceEEEEEEEcCCCCc-------eec--cCCCceEEE---------EECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            54    666677666543       333  255667788         999999988776433    56999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.6e-26  Score=194.84  Aligned_cols=256  Identities=9%  Similarity=-0.029  Sum_probs=190.5

Q ss_pred             EecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-CeEEEEEEcC-CCCeEEEEEe
Q 016457           56 SLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-FHEVWSVTAG-SQEIFCFSFG  133 (389)
Q Consensus        56 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~  133 (389)
                      ++.++.|++||+.+++... +..|...|.+++|+|++  ++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+
T Consensus        18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg--~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDG--KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTS--SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCC--CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            3568899999999887664 44588999999999999  6888876 78999999998 8777666555 4678999999


Q ss_pred             CCCCeEEEeec--CCeEEEE--ECcCCceeeeeeecccCCeeEEEEecCCCCeEE-EEeCCCcEEEEecCCCCCCCccce
Q 016457          134 GSTDYLLAAGC--GSQIQFW--DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV-SASVDGLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       134 ~~~~~l~~~~~--d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~  208 (389)
                      |++..+++++.  ++...+|  ++.+++ ...+.  +...+..++|+|+++ .|+ ++..++.+.+|++....   ....
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~~~~~---~~~~  166 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGK-SFTYCGIRDQVFDIYSMDIDS---GVET  166 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSS-EEEEEEEETTEEEEEEEETTT---CCEE
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCC-EEEEEECCCCceEEEEEECCC---Ccce
Confidence            99999999883  3445555  544444 34444  334589999999996 555 78889999999975221   2244


Q ss_pred             eeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcC-CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          209 SVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWK-DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      .+..+...+..++|+ ++++.|+.++ .++.+.+|++. .+..+..+..            |...+..+.|+|+++  +|
T Consensus       167 ~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~s~dg~--~l  231 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD------------SAYGDWFPHPSPSGD--KV  231 (297)
T ss_dssp             ECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECCC------------CSEEEEEEEECTTSS--EE
T ss_pred             EcccCCCccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEec------------CCcccCCeEECCCCC--EE
Confidence            555677789999999 6777766655 58899999886 4555555554            457788999999999  66


Q ss_pred             EEecCC-----------ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          287 IGGTGA-----------GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       287 ~~g~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      ++++.+           +.|++||+.+++..    .+..+. +|...+..+         +|+|++++|++++.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~~-~~~~~~~~~---------~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNVE----TLFDLF-GGQGTMNSP---------NWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTCCSCCSSEEEEEEEEETTSCSCE----EEEEEE-ESTTTSCSC---------CBCTTSSEEEEEEECC
T ss_pred             EEEEcCCCCCcccccCceEEEEEecCCCCce----eeeccC-CCCcccccc---------eECCCCCEEEEEEecc
Confidence            666554           67999999887641    122232 567777888         9999999998887553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1e-25  Score=215.77  Aligned_cols=306  Identities=7%  Similarity=-0.009  Sum_probs=220.6

Q ss_pred             ccccCC-CC-----eEEEEecCc--eeeeeec---C----------------------cceEEEeecCCCCeEEEEecCC
Q 016457           14 SQSCDN-VN-----SIKRFGLKN--SIQTNFG---D----------------------DYVFEIVPKNDWSLMAVSLSTN   60 (389)
Q Consensus        14 ~~s~~~-~~-----~i~~w~~~~--~~~~~~~---~----------------------~~v~~~~~~~~~~~l~~~~~d~   60 (389)
                      .++.+. ++     .|++|++..  ....+..   .                      ..|.+++|+|||++|++++. +
T Consensus        51 la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~  129 (741)
T 2ecf_A           51 VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-G  129 (741)
T ss_dssp             EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-T
T ss_pred             EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-C
Confidence            455555 66     899999853  3333332   1                      34889999999999999985 9


Q ss_pred             eEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCC------------
Q 016457           61 VVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQE------------  126 (389)
Q Consensus        61 ~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------  126 (389)
                      .|++||+.+++  ....+..|...+..++|+|++  ++|++++ ++.|.+||+.+++.......+...            
T Consensus       130 ~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG--~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~  206 (741)
T 2ecf_A          130 ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG--GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADE  206 (741)
T ss_dssp             EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS--SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHH
T ss_pred             cEEEEECCCCCcceEEEcccCCcccccccCCCCC--CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeee
Confidence            99999999873  455667788899999999999  7888887 568999999988776554443332            


Q ss_pred             ----eEEEEEeCCCCeEEEeecCC---------------------------------eEEEEECcC-Cceeeeeee-ccc
Q 016457          127 ----IFCFSFGGSTDYLLAAGCGS---------------------------------QIQFWDWRN-KKQVACLEE-SHV  167 (389)
Q Consensus       127 ----v~~~~~~~~~~~l~~~~~d~---------------------------------~i~iwd~~~-~~~~~~~~~-~~~  167 (389)
                          +.+++|+|+++.|++++.|+                                 .|.+||+.+ ++....... .|.
T Consensus       207 ~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  286 (741)
T 2ecf_A          207 EMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD  286 (741)
T ss_dssp             HSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS
T ss_pred             ccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc
Confidence                47899999999999987765                                 889999988 765543321 367


Q ss_pred             CCeeEEEEecCCCCeEEEEeC-----CCcEEEEecCCCCCCCccceeeeccCC----ceeeEEEecCCCcEEEEEecCCc
Q 016457          168 EDVTQVHFVPNNQNKVVSASV-----DGLICTFDTGGDINDDDLLESVINVGT----SVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      ..+..++| |+|+ .|++++.     +..|++||+.++.    .......+..    .+..++|+ ++++++++++.++.
T Consensus       287 ~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~g~  359 (741)
T 2ecf_A          287 IYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQ----QRVLAHETSPTWVPLHNSLRFL-DDGSILWSSERTGF  359 (741)
T ss_dssp             EEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCC----EEEEEEEECSSCCCCCSCCEEC-TTSCEEEEECTTSS
T ss_pred             eEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCc----eEEEEEcCCCCcCCcCCceEEC-CCCeEEEEecCCCc
Confidence            78999999 9996 7776653     5679999998653    2222222222    45689999 67778899999998


Q ss_pred             EEEEEcC-CCceeEEeecccccccCCccCCCCCceeee-cccCCCCeEEEEEecCCc--eEEEEEecc-CCccccCCCeE
Q 016457          239 LSIWDWK-DGQNVASFENARSLASDSWTLDDVDYFVDC-HYPGEGENLWVIGGTGAG--TVGYFPVNY-GGAATIGPPEA  313 (389)
Q Consensus       239 i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~g~~dg--~i~i~~~~~-~~~~~~~~~~~  313 (389)
                      ++||.+. ++. ...+..            +...+..+ .|+|+++.+ +++++.++  .+++|++.. +..      ..
T Consensus       360 ~~l~~~~~~~~-~~~l~~------------~~~~v~~~~~~s~dg~~l-~~~~~~~~~~~~~l~~~~~~g~~------~~  419 (741)
T 2ecf_A          360 QHLYRIDSKGK-AAALTH------------GNWSVDELLAVDEKAGLA-YFRAGIESARESQIYAVPLQGGQ------PQ  419 (741)
T ss_dssp             CEEEEECSSSC-EEESCC------------SSSCEEEEEEEETTTTEE-EEEECSSCTTCBEEEEEETTCCC------CE
T ss_pred             cEEEEEcCCCC-eeeeee------------cceEEEeEeEEeCCCCEE-EEEEeCCCCceEEEEEEEcCCCC------ee
Confidence            8888765 344 555554            44667776 599999843 34555665  899999874 332      24


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCC----CeEEEEeccCC
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED----GRLCCWLSDDS  361 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iW~~~~~  361 (389)
                      .+. . ...+..+         +|||||++|+....+    +.+.+|+.+..
T Consensus       420 ~l~-~-~~~~~~~---------~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          420 RLS-K-APGMHSA---------SFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             ECC-C-SCSEEEE---------EECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             ecc-c-CCCceEE---------EECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            443 2 4556777         999999988776433    46888887543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=9.2e-26  Score=195.30  Aligned_cols=268  Identities=10%  Similarity=0.066  Sum_probs=197.7

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCC--cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC----
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSS--TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS----  124 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----  124 (389)
                      ++|++++.++.|.+||+.+++.+..+.....  .+..++|+|++. .+++++..++.|.+||+.+++.+..+....    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC-EEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence            4788999999999999999998887763322  478999999983 244566678899999999999888777531    


Q ss_pred             -CCeEEEEEeCCCCeEEEee------------cCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc
Q 016457          125 -QEIFCFSFGGSTDYLLAAG------------CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL  191 (389)
Q Consensus       125 -~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  191 (389)
                       ..+.+++|+|+++.++++.            .++.|.+||+.+++.+..+.  ....+.+++|+|+++ .++++  ++.
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~--~~~  155 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGL--GRD  155 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEE--SSS
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCC-EEEEe--CCe
Confidence             2577899999999988886            57999999999988887776  355688999999996 67776  688


Q ss_pred             EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-C-----------------------cEEEEEcCCC
Q 016457          192 ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-E-----------------------TLSIWDWKDG  247 (389)
Q Consensus       192 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~-----------------------~i~i~d~~~~  247 (389)
                      |.+||+.++.    ....+.... ....+.|+ +++..++..+.. +                       .|.+||+.++
T Consensus       156 i~~~d~~~~~----~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          156 LHVMDPEAGT----LVEDKPIQS-WEAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             EEEEETTTTE----EEEEECSTT-TTTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EEEEECCCCc----Eeeeeeccc-cCCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            9999998542    222222221 11233566 455544433322 2                       4789999988


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL  327 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  327 (389)
                      +.. .+....          +...+..++|+|+++  +++++  ++.|++||+.+++.      +..+.  ....+.++ 
T Consensus       230 ~~~-~~~~~~----------~~~~~~~~~~s~dg~--~l~~~--~~~v~~~d~~~~~~------~~~~~--~~~~~~~~-  285 (337)
T 1pby_B          230 EMA-MREVRI----------MDVFYFSTAVNPAKT--RAFGA--YNVLESFDLEKNAS------IKRVP--LPHSYYSV-  285 (337)
T ss_dssp             CEE-EEEEEE----------CSSCEEEEEECTTSS--EEEEE--ESEEEEEETTTTEE------EEEEE--CSSCCCEE-
T ss_pred             Cce-EeecCC----------CCCceeeEEECCCCC--EEEEe--CCeEEEEECCCCcC------cceec--CCCceeeE-
Confidence            765 332211          446678899999999  55666  78999999988765      44443  22345667 


Q ss_pred             CCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          328 PMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       328 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                              +|+|+|++|++++.|+.|++|++....
T Consensus       286 --------~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          286 --------NVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             --------EECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             --------EECCCCCEEEEEcCCCcEEEEECcCCc
Confidence                    999999999999999999999998763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.7e-24  Score=187.01  Aligned_cols=277  Identities=10%  Similarity=0.075  Sum_probs=197.2

Q ss_pred             ccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCcee-eeeecCCCCcEEEEEE
Q 016457           14 SQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQY-SGECKGHSSTVNQISF   88 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~v~~i~~   88 (389)
                      -.+.+.++.|.+||..  +....+.. ...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..+++|
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI   91 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred             EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence            3467788999999975  34444444 5556 9999999997776665 88999999999887 7777767666666999


Q ss_pred             eCCCCCCEEEEEecCC---eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCe-EEEEECcCCceee---
Q 016457           89 SGPSTPHVLHSCSSDG---TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQ-IQFWDWRNKKQVA---  160 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~-i~iwd~~~~~~~~---  160 (389)
                      +|++  ++++++..++   .|.+||+.+++.+..+..+ ....+++|+|+++++++++. ++. |.+|++.....+.   
T Consensus        92 s~dg--~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           92 TPDD--QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             CTTS--SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             CCCC--CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence            9999  6888655553   8999999999998888764 56799999999988777765 577 9999987543321   


Q ss_pred             -eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCc
Q 016457          161 -CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIET  238 (389)
Q Consensus       161 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~  238 (389)
                       ... ........++|+|+++.+++++..++.|.+||+.++.. ...+..+ .....+..++|+ +++++++++. .++.
T Consensus       169 ~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~-~~~~~~~~~~~s-pdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          169 QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAV-GTNNLPGTIVVS-RDGSTVYVLTESTVD  244 (331)
T ss_dssp             EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEE-ECSSCCCCEEEC-TTSSEEEEECSSEEE
T ss_pred             Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeec-cCCCCCceEEEC-CCCCEEEEEEcCCCE
Confidence             111 34556899999999963445555689999999986531 0113333 345677899999 6777666554 5778


Q ss_pred             EEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          239 LSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       239 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      |.+||+.+++.  +..+...-....     ........++|+|+++.+ ++++..++.|.+||+....
T Consensus       245 i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l-~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          245 VFNFNQLSGTLSFVKSFGHGLLIDP-----RPLFGANQMALNKTETKL-FISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCCCC-----GGGTTCCCEEECTTSSEE-EEEETTTTEEEEEETTSCE
T ss_pred             EEEEECCCCceeeecccccccccCC-----CCcccccceEECCCCCEE-EEecCCCCcEEEEEecCCc
Confidence            99999998876  433332100000     011222558999999843 3455667899999998644

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.7e-25  Score=188.53  Aligned_cols=254  Identities=8%  Similarity=-0.013  Sum_probs=186.9

Q ss_pred             ccCCCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-ceeeeeecCC-CCcEEEEEEeCC
Q 016457           16 SCDNVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-GQYSGECKGH-SSTVNQISFSGP   91 (389)
Q Consensus        16 s~~~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~-~~~v~~i~~~~~   91 (389)
                      +.+.++.|++|++.. ....+.. ...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            456789999999863 3334444 88899999999999999987 88999999998 8777666665 478899999999


Q ss_pred             CCCCEEEEEe--cCCeEEEEEc--cCCeEEEEEEcCCCCeEEEEEeCCCCeEE-EeecCCeEEEEECcC-Cceeeeeeec
Q 016457           92 STPHVLHSCS--SDGTIRAWDT--RSFHEVWSVTAGSQEIFCFSFGGSTDYLL-AAGCGSQIQFWDWRN-KKQVACLEES  165 (389)
Q Consensus        92 ~~~~~l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~-~~~~~~~~~~  165 (389)
                      +  ++|++++  .++...||.+  .+++ ...+..+ ..+.+++|+|++..++ ++..++.+.+|+++. ......+. .
T Consensus        96 g--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~  170 (297)
T 2ojh_A           96 G--ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-H  170 (297)
T ss_dssp             S--SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-C
T ss_pred             C--CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-c
Confidence            9  7899888  3345555554  4444 3344443 4589999999999888 556689999998643 23334444 5


Q ss_pred             ccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC--------
Q 016457          166 HVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI--------  236 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------  236 (389)
                      +...+.+++|+|+++ .|+.++ .++.+.+|++...   ......+..+...+..++|+ +++++|++++.+        
T Consensus       171 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGR-WIYFNSSRTGQMQIWRVRVD---GSSVERITDSAYGDWFPHPS-PSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             SSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETT---SSCEEECCCCSEEEEEEEEC-TTSSEEEEEEEETTCCSCCS
T ss_pred             CCCccccceECCCCC-EEEEEecCCCCccEEEECCC---CCCcEEEecCCcccCCeEEC-CCCCEEEEEEcCCCCCcccc
Confidence            778899999999996 666555 5899999998622   12345555667788899999 778888877765        


Q ss_pred             ---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC
Q 016457          237 ---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA  292 (389)
Q Consensus       237 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d  292 (389)
                         +.|.+||+.+++.........          |...+..++|+|+++  +|++++.+
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~spdg~--~l~~~~~~  292 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFG----------GQGTMNSPNWSPDGD--EFAYVRYF  292 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEE----------STTTSCSCCBCTTSS--EEEEEEEC
T ss_pred             cCceEEEEEecCCCCceeeeccCC----------CCcccccceECCCCC--EEEEEEec
Confidence               569999998876543332111          557899999999999  55555443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=8.9e-25  Score=216.19  Aligned_cols=297  Identities=12%  Similarity=0.075  Sum_probs=210.7

Q ss_pred             CCeEEEEecC-ceeeeeec-CcceEEEeecCCCCeEEEEecC------CeEEEEeCCCceeeeeecCCCCcE-------E
Q 016457           20 VNSIKRFGLK-NSIQTNFG-DDYVFEIVPKNDWSLMAVSLST------NVVKLYSPVTGQYSGECKGHSSTV-------N   84 (389)
Q Consensus        20 ~~~i~~w~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~v-------~   84 (389)
                      .+.|++|++. .....+.. ...+.+++|+|||+.||+++.+      ..|++|++.+++ ...+..|...+       .
T Consensus        32 ~~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~  110 (1045)
T 1k32_A           32 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTD  110 (1045)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSE
T ss_pred             CCcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccc
Confidence            3689999985 34555555 7889999999999999988653      379999998876 56677788888       9


Q ss_pred             EEEEeCCCCCCEEEEEecC------CeEEEEEccCCeEE-----------------------------------------
Q 016457           85 QISFSGPSTPHVLHSCSSD------GTIRAWDTRSFHEV-----------------------------------------  117 (389)
Q Consensus        85 ~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~-----------------------------------------  117 (389)
                      .++|+|++  +++++++.+      ..|.+|++.+++..                                         
T Consensus       111 ~~~~SpDg--~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          111 VAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             EEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccCCCCC--EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence            99999999  677777754      35777887655432                                         


Q ss_pred             --------EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-Cceeeeeeecc----------------------
Q 016457          118 --------WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-KKQVACLEESH----------------------  166 (389)
Q Consensus       118 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~----------------------  166 (389)
                              ..+..|...+.++.|+++ ..++++..++.+.+|.+.. +.....+. .|                      
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~~~~~SpDG~~la~~~~~~  266 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFTDYYPRHLNTDGRRILFSKGGS  266 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCCSSCEEEEEESSSCEEEEETTE
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCCCcceeeEcCCCCEEEEEeCCE
Confidence                    122345666777788755 3444455577777776542 22222221 11                      


Q ss_pred             ----------------------------cCCeeEEEEe-cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC-c
Q 016457          167 ----------------------------VEDVTQVHFV-PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT-S  216 (389)
Q Consensus       167 ----------------------------~~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~  216 (389)
                                                  ...+.+++|+ |+|+ .|++++ ++.|.+|++.++.     ...+..+.. .
T Consensus       267 i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~  339 (1045)
T 1k32_A          267 IYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY-----VLKVPEPLRIR  339 (1045)
T ss_dssp             EEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB-----EEECSCCSCEE
T ss_pred             EEEecCCceEeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc-----eEEccCCCcce
Confidence                                        1235666666 6664 555554 5666666665321     222334455 6


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEE-EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLS-IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                      +..++|+  +++.|+.++.++.+. +|++.+++.. .+..            |...+..++|+|+|+  +|++++.++.|
T Consensus       340 ~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~------------~~~~~~~~~~SpDG~--~la~~~~~~~v  402 (1045)
T 1k32_A          340 YVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAE-KFEE------------NLGNVFAMGVDRNGK--FAVVANDRFEI  402 (1045)
T ss_dssp             EEEECSS--SEEEEEEEETTEEEEEEEETTTCCEE-ECCC------------CCCSEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEeeeEc--CCCeEEEEECCCceEEEEECCCCCce-EecC------------CccceeeeEECCCCC--EEEEECCCCeE
Confidence            7788887  677888888888888 9998876543 3333            557889999999999  88899999999


Q ss_pred             EEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC----------eEEEEeccCC
Q 016457          296 GYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG----------RLCCWLSDDS  361 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg----------~v~iW~~~~~  361 (389)
                      ++||+.+++.       ..+..+|...+..+         +|||||++|++++.++          .|++|++...
T Consensus       403 ~~~d~~tg~~-------~~~~~~~~~~v~~~---------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          403 MTVDLETGKP-------TVIERSREAMITDF---------TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EEEETTTCCE-------EEEEECSSSCCCCE---------EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             EEEECCCCce-------EEeccCCCCCccce---------EECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            9999998875       34434788888888         9999999999887654          9999999865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=4.4e-24  Score=184.72  Aligned_cols=263  Identities=10%  Similarity=0.030  Sum_probs=198.8

Q ss_pred             cccCCCCeEEEEecCc--eeeeeecCc---ceEEEeecCCCCeEE-EEecCCeEEEEeCCCceeeeeecC-C----CCcE
Q 016457           15 QSCDNVNSIKRFGLKN--SIQTNFGDD---YVFEIVPKNDWSLMA-VSLSTNVVKLYSPVTGQYSGECKG-H----SSTV   83 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~~--~~~~~~~~~---~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~-~----~~~v   83 (389)
                      .+++.++.|++||...  .+..+....   .+..++|+|+++.++ ++..++.|.+||+.+++.+..+.. +    ...+
T Consensus         5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T 1pby_B            5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL   84 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence            4567889999999863  444454433   589999999997665 445578999999999988776653 2    2267


Q ss_pred             EEEEEeCCCCCCEEEEEe------------cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEE
Q 016457           84 NQISFSGPSTPHVLHSCS------------SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFW  151 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  151 (389)
                      ..++|+|++  ++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|+++.++++  ++.|.+|
T Consensus        85 ~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           85 FGAALSPDG--KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             TCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cceEECCCC--CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            789999999  6888875            579999999999998888876 4678889999999988888  6899999


Q ss_pred             ECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC-----------------------cEEEEecCCCCCCCccce
Q 016457          152 DWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG-----------------------LICTFDTGGDINDDDLLE  208 (389)
Q Consensus       152 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~~~~~~~~~~~  208 (389)
                      |+.+++.+..+. .+. ....+.|+|++..+++++..++                       .|.+||+.++..   ...
T Consensus       160 d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~  234 (337)
T 1pby_B          160 DPEAGTLVEDKP-IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMR  234 (337)
T ss_dssp             ETTTTEEEEEEC-STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEE
T ss_pred             ECCCCcEeeeee-ccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEe
Confidence            999998877776 222 1113378899863333333333                       468999986531   123


Q ss_pred             eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          209 SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ....+...+..++|+ +++++++++  ++.|.+||+.+++.+..+...             ..+.+++|+|+++  +|++
T Consensus       235 ~~~~~~~~~~~~~~s-~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~--~l~~  296 (337)
T 1pby_B          235 EVRIMDVFYFSTAVN-PAKTRAFGA--YNVLESFDLEKNASIKRVPLP-------------HSYYSVNVSTDGS--TVWL  296 (337)
T ss_dssp             EEEECSSCEEEEEEC-TTSSEEEEE--ESEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSC--EEEE
T ss_pred             ecCCCCCceeeEEEC-CCCCEEEEe--CCeEEEEECCCCcCcceecCC-------------CceeeEEECCCCC--EEEE
Confidence            334455678889999 678888877  789999999999888776632             4578899999999  6666


Q ss_pred             ecCCceEEEEEeccCCc
Q 016457          289 GTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       289 g~~dg~i~i~~~~~~~~  305 (389)
                      ++.++.|++||+.+++.
T Consensus       297 ~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          297 GGALGDLAAYDAETLEK  313 (337)
T ss_dssp             ESBSSEEEEEETTTCCE
T ss_pred             EcCCCcEEEEECcCCcE
Confidence            77899999999998776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.8e-24  Score=205.22  Aligned_cols=293  Identities=9%  Similarity=0.024  Sum_probs=200.3

Q ss_pred             CCCCeEEEEecC--ceeeeeec-Cc---ceEEEeecCCCCeEEEEecC---------CeEEEEeCCCcee--eeeecCCC
Q 016457           18 DNVNSIKRFGLK--NSIQTNFG-DD---YVFEIVPKNDWSLMAVSLST---------NVVKLYSPVTGQY--SGECKGHS   80 (389)
Q Consensus        18 ~~~~~i~~w~~~--~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iw~~~~~~~--~~~~~~~~   80 (389)
                      +.|++|++|+..  +....+.+ ..   .|.+++|+|||++|++++.+         +.|.+||+.+++.  +....+|.
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  113 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc
Confidence            678999999985  34444444 22   49999999999999999864         7889999998875  22233455


Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe------------------EEEEEeCCCCeEEEe
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI------------------FCFSFGGSTDYLLAA  142 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~~~  142 (389)
                      ..+..++|+|++  +.|++++. +.|++||+.+++.......+...+                  .+++|+|+++.|+++
T Consensus       114 ~~~~~~~~SPdG--~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          114 AKLQYAGWGPKG--QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             CCCSBCCBCSST--TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccccEECCCC--CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            568999999999  68888875 789999999888776665543333                  789999999999988


Q ss_pred             ecCC----------------------------------eEEEEECcCCceeeeeeecc------cCCeeEEEEecCCCCe
Q 016457          143 GCGS----------------------------------QIQFWDWRNKKQVACLEESH------VEDVTQVHFVPNNQNK  182 (389)
Q Consensus       143 ~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~  182 (389)
                      +.++                                  .|++||+.+++....+. .+      ...+..++|+|+|+ +
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~~~~~~SpDg~-~  268 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-PPDDPRMREYYITMVKWATSTK-V  268 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-CCCCGGGSSEEEEEEEESSSSE-E
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-CCccCCCccceeEEEEEeCCCe-E
Confidence            7543                                  79999999887655555 32      56789999999996 7


Q ss_pred             EEEEeC----CCcEEEEecCCCCCCCccceeee-ccCCce----eeEEEecCCCcEEEE--EecCC------cEEEEE-c
Q 016457          183 VVSASV----DGLICTFDTGGDINDDDLLESVI-NVGTSV----GKVGFFGETNKHLWC--LTHIE------TLSIWD-W  244 (389)
Q Consensus       183 l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i----~~~~~~~~~~~~l~~--~~~d~------~i~i~d-~  244 (389)
                      +++...    +..|++||+.++.    ...... .+...+    ..++|+ ++++.|+.  +..++      .|.+|| .
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~l~~~d~~  343 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGV----CTKKHEDESEAWLHRQNEEPVFS-KDGRKFFFIRAIPQGGRGKFYHITVSSSQ  343 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCC----EEEEEEEECSSCCCCCCCCCEEC-TTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCc----ceEEEEeccCCEEeccCCCceEc-CCCCeEEEEEecccCCCcceeEEEEEecc
Confidence            766643    3579999998653    222222 223333    378999 56665553  45566      567777 3


Q ss_pred             CCCce--eEEeecccccccCCccCCCCCceee-ecccCCCCeEEEE-EecCC--ceEEEEEeccCCccccCCCeEEEecc
Q 016457          245 KDGQN--VASFENARSLASDSWTLDDVDYFVD-CHYPGEGENLWVI-GGTGA--GTVGYFPVNYGGAATIGPPEAVLVGG  318 (389)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~-~g~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~  318 (389)
                      ..+..  ...+..            +...+.. ++|+|+|+  .|+ ++..+  +.+++|++.....    .....+...
T Consensus       344 ~~~~~~~~~~l~~------------~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~l~~~  405 (723)
T 1xfd_A          344 PNSSNDNIQSITS------------GDWDVTKILAYDEKGN--KIYFLSTEDLPRRRQLYSANTVGN----FNRQCLSCD  405 (723)
T ss_dssp             CCSSSCCCCBSCC------------SSSCEEEEEEEETTTT--EEEEEESSSCTTCCEEEEECSSTT----CCCBCSSTT
T ss_pred             CCCCccceeEeec------------CCeEEEeeeEEcCCCC--EEEEEEcCCCCcceEEEEEeCCCC----CCcceeccc
Confidence            33331  333332            1133444 68999999  444 44444  7899999875321    001222211


Q ss_pred             --cceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          319 --HTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       319 --h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                        |...+..+         +|+|||++|+..
T Consensus       406 ~~~~~~~~~~---------~~spdg~~l~~~  427 (723)
T 1xfd_A          406 LVENCTYFSA---------SFSHSMDFFLLK  427 (723)
T ss_dssp             SSSSCCCCEE---------EECTTSSEEEEE
T ss_pred             ccCCCCeEEE---------EECCCCCEEEEE
Confidence              55567777         899999987764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=1.6e-24  Score=201.64  Aligned_cols=269  Identities=11%  Similarity=-0.015  Sum_probs=199.9

Q ss_pred             CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~  113 (389)
                      ..+|++++|+|||+.||+++. +|+++||++.+++.......+...+..++|+|+   +++++++.   +...++|.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC---eEEEEeccCCCCcceEEEEEec
Confidence            567999999999999999887 999999999776655444434368999999987   37777765   45566665543


Q ss_pred             ---CeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          114 ---FHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       114 ---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                         +... .+.. ...+...+|+|+++. +++++.++.+.+||+.+++......  +..  .+++|+|+|+ .|++++.+
T Consensus        98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~-~la~~~~~  170 (582)
T 3o4h_A           98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGD-LIAGLGFF  170 (582)
T ss_dssp             TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETT-EEEEEEEE
T ss_pred             cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCC-EEEEEEEc
Confidence               2222 3332 234556788888765 4455555666699999887655443  333  8899999996 88877776


Q ss_pred             ----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC--cEEEEEcCCCceeEEeecccccccCC
Q 016457          190 ----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE--TLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       190 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                          +.|++||+.++.     ...+..+...+..++|+ |+++.|+++..++  .|++||+.+++.. .+..        
T Consensus       171 ~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~--------  235 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVE-DLEL--------  235 (582)
T ss_dssp             ETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC--------
T ss_pred             CCCCeEEEEEcCCCCC-----ceEeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC--------
Confidence                789999998653     44566777889999999 7888999888888  8999999988776 5544        


Q ss_pred             ccCCCCCceeeec--------ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCC
Q 016457          264 WTLDDVDYFVDCH--------YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGR  335 (389)
Q Consensus       264 ~~~~~~~~i~~~~--------~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  335 (389)
                          |...+..+.        |+|||.  ++++++.+|.+++|++  ++.      +.    .+...|.++         
T Consensus       236 ----~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~--g~~------~~----~~~~~v~~~---------  288 (582)
T 3o4h_A          236 ----PSKDFSSYRPTAITWLGYLPDGR--LAVVARREGRSAVFID--GER------VE----APQGNHGRV---------  288 (582)
T ss_dssp             ----SCSHHHHHCCSEEEEEEECTTSC--EEEEEEETTEEEEEET--TEE------EC----CCSSEEEEE---------
T ss_pred             ----CCcChhhhhhccccceeEcCCCc--EEEEEEcCCcEEEEEE--CCe------ec----cCCCceEEE---------
Confidence                446677777        999995  7889999999999999  443      11    233567788         


Q ss_pred             CCCCCceeEEEecCCCe---EEEEecc
Q 016457          336 PAQSHGIFGWTGGEDGR---LCCWLSD  359 (389)
Q Consensus       336 ~~s~~~~~l~s~~~dg~---v~iW~~~  359 (389)
                      +|+ +++++++++.+..   |.+|+.+
T Consensus       289 ~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          289 VLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             Eec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            899 9999999887754   6666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.1e-24  Score=213.58  Aligned_cols=290  Identities=8%  Similarity=-0.028  Sum_probs=223.4

Q ss_pred             eEEEEe--cCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-ceeeeeecCCCCcEEEEEEeCCCCCCEE
Q 016457           22 SIKRFG--LKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-GQYSGECKGHSSTVNQISFSGPSTPHVL   97 (389)
Q Consensus        22 ~i~~w~--~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l   97 (389)
                      ..++|.  .......+.+ ...+.++.|+++ .+++++..++.+.||.+.. +.....+..|. .+..++|+|++  +.|
T Consensus       184 ~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG--~~l  259 (1045)
T 1k32_A          184 RGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG--RRI  259 (1045)
T ss_dssp             CCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS--SCE
T ss_pred             cCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC--CEE
Confidence            344443  3344455555 888999999998 6777788889999998653 44455555554 46778999999  678


Q ss_pred             EEEecCCeEEEEEccCCeEEEEEEc-----------CCCCeEEEEEe-CCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWSVTA-----------GSQEIFCFSFG-GSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      +++ .++.|.+|++... .+..+..           |...+.+++|+ |++..+++++ ++.|.+|++..++... +. .
T Consensus       260 a~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-~  334 (1045)
T 1k32_A          260 LFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-E  334 (1045)
T ss_dssp             EEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-C
T ss_pred             EEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-C
Confidence            777 5899999999544 3334444           22368999999 9999888887 7899999998776544 44 4


Q ss_pred             ccC-CeeEEEEecCCCCeEEEEeCCCcEE-EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEE
Q 016457          166 HVE-DVTQVHFVPNNQNKVVSASVDGLIC-TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWD  243 (389)
Q Consensus       166 ~~~-~v~~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d  243 (389)
                      |.. .+..++|+ +++ .|+.++.++.+. +||+.++.     ...+..+...+..++|+ +++++|++++.++.|++||
T Consensus       335 ~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~S-pDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             CSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEE
T ss_pred             CCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCC-----ceEecCCccceeeeEEC-CCCCEEEEECCCCeEEEEE
Confidence            666 89999999 885 888888888888 89988542     23333666789999999 7899999999999999999


Q ss_pred             cCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC----------ceEEEEEeccCCccccCCCeE
Q 016457          244 WKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA----------GTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d----------g~i~i~~~~~~~~~~~~~~~~  313 (389)
                      +.+++....+..            |...+..++|+|||+  +|++++.+          +.|++||+.+++.       .
T Consensus       407 ~~tg~~~~~~~~------------~~~~v~~~~~SpDG~--~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-------~  465 (1045)
T 1k32_A          407 LETGKPTVIERS------------REAMITDFTISDNSR--FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-------F  465 (1045)
T ss_dssp             TTTCCEEEEEEC------------SSSCCCCEEECTTSC--EEEEEEEECSSTTCSCCEEEEEEEETTTTEE-------E
T ss_pred             CCCCceEEeccC------------CCCCccceEECCCCC--eEEEEecCccccccCCCCCeEEEEECCCCcE-------E
Confidence            999987776655            557889999999999  66666553          4999999987654       4


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      .+. .|...+..+         +|+|||++|++++.++..++|+..
T Consensus       466 ~l~-~~~~~~~~~---------~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          466 AAT-TENSHDYAP---------AFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             ECS-CSSSBEEEE---------EECTTSCEEEEEESCCCCCEECSS
T ss_pred             Eee-CCCcccCCc---------eEcCCCCEEEEEecccCCcCcchh
Confidence            444 677777777         999999999999998888888764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=5.9e-23  Score=178.57  Aligned_cols=268  Identities=8%  Similarity=0.055  Sum_probs=179.6

Q ss_pred             CCCeEEEEecCc---eeee---eecCcceEEEeecCCCCeEEEEec---CCeEEEEeCCCce--eeeeecCCCCcEEEEE
Q 016457           19 NVNSIKRFGLKN---SIQT---NFGDDYVFEIVPKNDWSLMAVSLS---TNVVKLYSPVTGQ--YSGECKGHSSTVNQIS   87 (389)
Q Consensus        19 ~~~~i~~w~~~~---~~~~---~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~   87 (389)
                      .++.|.+|.+..   .+..   ......+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            456777877642   2222   22256678899999998 555554   5899999997765  4445455777889999


Q ss_pred             EeCCCCCCEEEEEe-cCCeEEEEEcc-CC--eEEEEEEcC---------CCCeEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457           88 FSGPSTPHVLHSCS-SDGTIRAWDTR-SF--HEVWSVTAG---------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDW  153 (389)
Q Consensus        88 ~~~~~~~~~l~s~~-~dg~i~iwd~~-~~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~  153 (389)
                      |+|++  ++|++++ .++.|.+|++. ++  +.+..+...         ...+.+++|+|+++ ++++.. ++.|.+||+
T Consensus        93 ~spdg--~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~  169 (347)
T 3hfq_A           93 VDEAR--QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNV  169 (347)
T ss_dssp             EETTT--TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEE
T ss_pred             ECCCC--CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEE
Confidence            99999  6788777 78999999996 22  334444322         12488999999998 555554 889999999


Q ss_pred             c-CCcee--eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC------CceeeEEEec
Q 016457          154 R-NKKQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVG------TSVGKVGFFG  224 (389)
Q Consensus       154 ~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~  224 (389)
                      . +++..  ..+.......+..++|+|+++.++++...++.|.+|++.................      ..+..++|+ 
T Consensus       170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s-  248 (347)
T 3hfq_A          170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS-  248 (347)
T ss_dssp             CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC-
T ss_pred             CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC-
Confidence            8 45432  2222123346788999999963444456788999999884211111122222222      357889999 


Q ss_pred             CCCcEE-EEEecCCcEEEEEcCCC---ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEE
Q 016457          225 ETNKHL-WCLTHIETLSIWDWKDG---QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFP  299 (389)
Q Consensus       225 ~~~~~l-~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~  299 (389)
                      +++++| ++...++.|.+|++...   +.+..+..            +...+..++|+|+|+  +|++++ .++.|.+|+
T Consensus       249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST------------EGDFPRDFDLDPTEA--FVVVVNQNTDNATLYA  314 (347)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC------------SSSCCCEEEECTTSS--EEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec------------CCCCcCeEEECCCCC--EEEEEEcCCCcEEEEE
Confidence            677766 55566899999998732   33333332            335678999999998  555554 458999995


Q ss_pred             ec--cCCc
Q 016457          300 VN--YGGA  305 (389)
Q Consensus       300 ~~--~~~~  305 (389)
                      ++  ++++
T Consensus       315 ~d~~tg~l  322 (347)
T 3hfq_A          315 RDLTSGKL  322 (347)
T ss_dssp             ECTTTCCE
T ss_pred             EeCCCCeE
Confidence            54  4543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2.2e-22  Score=175.29  Aligned_cols=244  Identities=12%  Similarity=0.085  Sum_probs=187.9

Q ss_pred             CCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCC---------cEEEEE
Q 016457           20 VNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSS---------TVNQIS   87 (389)
Q Consensus        20 ~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~---------~v~~i~   87 (389)
                      ++.|.+||..  +.+..+.....+..++|+|++++++++ ..++.|.+||..+++.+..+..+..         .+.+++
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            6789999985  344555445568899999999866555 4479999999999998887765432         278999


Q ss_pred             EeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-
Q 016457           88 FSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-  164 (389)
Q Consensus        88 ~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  164 (389)
                      |+|++  +.+++++  .++.|.+||+.+++.+..+..+...+.+++|+|+++.+++++.++.|.+||+.+++.+..+.. 
T Consensus       148 ~s~dg--~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          148 ADDAT--NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EETTT--TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             ECCCC--CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC
Confidence            99998  5666655  478999999999999988885666788999999999999999999999999999988877762 


Q ss_pred             --cccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEE
Q 016457          165 --SHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLS  240 (389)
Q Consensus       165 --~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~  240 (389)
                        ++...+..++|+|+++ .+++++ .++.|.+||+.++.    .+..+.. .. ...++|+ ++++.++++. .++.|.
T Consensus       226 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~----~~~~~~~-~~-~~~~~~s-~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQ-RAFITDSKAAEVLVVDTRNGN----ILAKVAA-PE-SLAVLFN-PARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             CSSSCCCEEEEEEETTTT-EEEEEESSSSEEEEEETTTCC----EEEEEEC-SS-CCCEEEE-TTTTEEEEEETTTTEEE
T ss_pred             CCCCCcccceEEECCCCC-EEEEEeCCCCEEEEEECCCCc----EEEEEEc-CC-CceEEEC-CCCCEEEEEECCCCeEE
Confidence              2455678899999996 555554 45999999998552    2333322 22 3678999 6666555544 689999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      +||..+++.+..+..             ...+..++|+|+|+.+|+
T Consensus       298 ~~d~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          298 VIDAKSYKVVKTFDT-------------PTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             EEETTTTEEEEEEEC-------------CSEEEEEEECTTSCEEEE
T ss_pred             EEECCCCeEEEEEec-------------CCCCCeEEEcCCCCEEEE
Confidence            999999988877764             246789999999995433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=5.3e-23  Score=178.86  Aligned_cols=282  Identities=10%  Similarity=0.078  Sum_probs=185.0

Q ss_pred             eEEEEec----CCeEEEEeCC--Cceeee-eecCCCCcEEEEEEeCCCCCCEEEEEec---CCeEEEEEccCCe--EEEE
Q 016457           52 LMAVSLS----TNVVKLYSPV--TGQYSG-ECKGHSSTVNQISFSGPSTPHVLHSCSS---DGTIRAWDTRSFH--EVWS  119 (389)
Q Consensus        52 ~l~~~~~----d~~i~iw~~~--~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~  119 (389)
                      .+++|+.    ++.|.+|.++  +++... ....+...+..++|+|++  + |++++.   ++.|.+|++.+++  .+..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg--~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD--C-LYSVDKEDDEGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC--E-EEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC--e-EEEEEecCCCceEEEEEecCCcEEEeee
Confidence            4555532    4567777654  455433 233455677889999998  5 555544   6899999998765  4444


Q ss_pred             EEcCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcC-C--ceeeeeeec--------ccCCeeEEEEecCCCCeEEEEe
Q 016457          120 VTAGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRN-K--KQVACLEES--------HVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       120 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~--~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      +..+...+..++|+|+++.+++++ .++.|.+||+.. +  +.+..+...        +...+.+++|+|+++ ++++..
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~  159 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL  159 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC
Confidence            455667889999999999999888 589999999963 2  233333210        112488999999997 888877


Q ss_pred             CCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCC--Cce--eEEeeccccccc
Q 016457          188 VDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKD--GQN--VASFENARSLAS  261 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~--~~~~~~~~~~~~  261 (389)
                      .++.|.+||+.... ......... .....+..++|+ ++++++++ ...++.|.+|++..  ++.  +..+....   .
T Consensus       160 ~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~---~  234 (347)
T 3hfq_A          160 GSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP---A  234 (347)
T ss_dssp             TTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC---T
T ss_pred             CCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC---C
Confidence            88999999998221 111111112 223467789999 67775555 56678999999874  432  22222111   0


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC-CccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG-GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                      .   ......+..++|+|+|+.+ +++...++.|.+|++... ..    ..+..+. .+...+..+         +|+||
T Consensus       235 ~---~~~~~~~~~i~~spdG~~l-~v~~~~~~~v~v~~~~~~g~~----~~~~~~~-~~~~~~~~~---------~~spd  296 (347)
T 3hfq_A          235 D---YTAHNGAAAIRLSHDGHFL-YVSNRGYNTLAVFAVTADGHL----TLIQQIS-TEGDFPRDF---------DLDPT  296 (347)
T ss_dssp             T---CCSCCEEEEEEECTTSCEE-EEEEETTTEEEEEEECGGGCE----EEEEEEE-CSSSCCCEE---------EECTT
T ss_pred             C---CCCCCcceeEEECCCCCEE-EEEeCCCCEEEEEEECCCCcE----EEeEEEe-cCCCCcCeE---------EECCC
Confidence            0   0012457889999999843 255667899999999732 21    1123333 444556677         99999


Q ss_pred             ceeEEEecC-CCeEEEEeccC
Q 016457          341 GIFGWTGGE-DGRLCCWLSDD  360 (389)
Q Consensus       341 ~~~l~s~~~-dg~v~iW~~~~  360 (389)
                      |++|++++. ++.|.+|+++.
T Consensus       297 g~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          297 EAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEECT
T ss_pred             CCEEEEEEcCCCcEEEEEEeC
Confidence            998888765 58999997764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=4.5e-23  Score=179.30  Aligned_cols=274  Identities=11%  Similarity=0.056  Sum_probs=187.2

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEE
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~  120 (389)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++  +.+ +++..++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            46788899999999999999999999999888876543 257889999998  554 55667899999999999988888


Q ss_pred             EcCC------CCeEEEEEeCCCCeEEEeecC------------CeEEEEECcCCcee---eeeeecccCCeeEEEEecCC
Q 016457          121 TAGS------QEIFCFSFGGSTDYLLAAGCG------------SQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       121 ~~~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~  179 (389)
                      ..+.      ..+.+++|+|+++.+++++.+            +.|.+||+.+++..   ..+.  +...+.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDG  159 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTS
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCC
Confidence            7542      237889999999999998865            89999999985433   3333  44568999999999


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCCccceeeeccC--C----------------------ceeeEEEecCCCcEE-EEEe
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDDDLLESVINVG--T----------------------SVGKVGFFGETNKHL-WCLT  234 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~----------------------~i~~~~~~~~~~~~l-~~~~  234 (389)
                      + +++ ++  +.|.+||+.++.    ....+....  .                      ....++++ +++... ....
T Consensus       160 ~-l~~-~~--~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~  230 (349)
T 1jmx_B          160 S-LYV-AG--PDIYKMDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATAD  230 (349)
T ss_dssp             C-EEE-ES--SSEEEECTTTCC----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCE
T ss_pred             c-EEE-cc--CcEEEEeCCCCc----eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccc
Confidence            5 444 43  349999998653    122221110  0                      12234444 211100 0000


Q ss_pred             cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCCeEEEEEecCCceEEEEEeccCCccccCCCeE
Q 016457          235 HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA  313 (389)
Q Consensus       235 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~  313 (389)
                      ....+..++..+++.. .+....          +...+..++|+| +++  +++++  ++.|++||+.+++.      +.
T Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~sp~dg~--~l~~~--~~~v~~~d~~~~~~------~~  289 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTH-TQEFAD----------LTELYFTGLRSPKDPN--QIYGV--LNRLAKYDLKQRKL------IK  289 (349)
T ss_dssp             EEEEEEEEETTTCCEE-EEEEEE----------CSSCEEEEEECSSCTT--EEEEE--ESEEEEEETTTTEE------EE
T ss_pred             cceeEEEEeccCCcEE-eccccc----------CCCcceeeEecCCCCC--EEEEE--cCeEEEEECccCeE------EE
Confidence            1112223555554322 111111          335678899999 998  55555  88999999998765      44


Q ss_pred             EEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       314 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .+.  ....+.++         +|+|+|++|++++.++.|++|++...
T Consensus       290 ~~~--~~~~~~~~---------~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          290 AAN--LDHTYYCV---------AFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEE--CSSCCCEE---------EECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EEc--CCCCccce---------EECCCCCEEEEecCCCeEEEEecccc
Confidence            444  22345667         99999999999999999999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.3e-22  Score=193.13  Aligned_cols=263  Identities=14%  Similarity=0.117  Sum_probs=189.2

Q ss_pred             CCCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC-----ceeeeeecCCCCc--------
Q 016457           18 DNVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-----GQYSGECKGHSST--------   82 (389)
Q Consensus        18 ~~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~--------   82 (389)
                      +.++.|++||+.. ....+.. ...+.+++|+|||+.|+++ .++.|++|++.+     ++.......+...        
T Consensus        98 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A           98 FTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             EETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             EECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence            3558999999863 3333433 6778899999999999996 589999999998     7766554444333        


Q ss_pred             ------EEEEEEeCCCCCCEEEEEe---------------------------------cCCeEEEEEccCCeEEEEEE--
Q 016457           83 ------VNQISFSGPSTPHVLHSCS---------------------------------SDGTIRAWDTRSFHEVWSVT--  121 (389)
Q Consensus        83 ------v~~i~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~--  121 (389)
                            +.+++|+|++  ++|++++                                 .+..|.+||+.+++......  
T Consensus       177 ~ee~~~~~~~~~SpDg--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  254 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKG--SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE  254 (706)
T ss_dssp             GGCTTCCCSEEECTTS--SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred             hhhcCCCceEEECCCC--CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence                  4899999999  7898887                                 44679999999887654432  


Q ss_pred             cCCCCeEEEEEeCCCCeEEEeecCC-----eEEEEECcCCceeeeee-ecccC---CeeEEEEec--CCCCeEEEEeCCC
Q 016457          122 AGSQEIFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNKKQVACLE-ESHVE---DVTQVHFVP--NNQNKVVSASVDG  190 (389)
Q Consensus       122 ~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~-~~~~~---~v~~~~~~~--~~~~~l~~~~~d~  190 (389)
                      .+...+.+++|+|+++.+++++.++     .|.+||+.+++....+. ..+..   .+.+++|+|  +++ ++++++.++
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g  333 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDG  333 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCC
Confidence            3457799999999999999887765     89999999884443332 12222   246789999  996 899999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceee-EEEecCCCcEEEEE-ecCC----cEEEEEcCCCceeEEeecccccccCCc
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGK-VGFFGETNKHLWCL-THIE----TLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      .+++|++...   ...+..+..+...+.. ++|+ ++++.|+.+ +.++    .|..||+.+++ ...+.          
T Consensus       334 ~~~l~~~~~~---~~~~~~l~~~~~~v~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~----------  398 (706)
T 2z3z_A          334 WNHLYLYDTT---GRLIRQVTKGEWEVTNFAGFD-PKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT----------  398 (706)
T ss_dssp             SCEEEEEETT---SCEEEECCCSSSCEEEEEEEC-TTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC----------
T ss_pred             ccEEEEEECC---CCEEEecCCCCeEEEeeeEEc-CCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc----------
Confidence            9999987621   1334455556666766 7899 566665554 4444    67777777664 33333          


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEe-cCC---ceEEEEEeccCC
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGG-TGA---GTVGYFPVNYGG  304 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g-~~d---g~i~i~~~~~~~  304 (389)
                         +...+..++|+|+|+  +++.. +.+   +.|++||+.+++
T Consensus       399 ---~~~~~~~~~~spdg~--~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          399 ---PESGMHRTQLSPDGS--AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ---CSSSEEEEEECTTSS--EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ---CCCceEEEEECCCCC--EEEEEecCCCCCcEEEEEECCCCe
Confidence               336688999999998  44443 332   579999998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=5.8e-24  Score=202.87  Aligned_cols=283  Identities=12%  Similarity=0.033  Sum_probs=193.8

Q ss_pred             EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCC---cEEEEEEeCCCCCCEEEEEec---------CCeEEEE
Q 016457           42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS---TVNQISFSGPSTPHVLHSCSS---------DGTIRAW  109 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~---------dg~i~iw  109 (389)
                      .+++|+|+++++++ +.|+.|++||+.+++....+.+|..   .+.+++|+|++  ++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg--~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR--QFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS--SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC--CeEEEEecCceeEEeecceEEEEE
Confidence            37789999965554 4699999999999988777765543   38999999999  78888876         7899999


Q ss_pred             EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----------------eE
Q 016457          110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----------------TQ  172 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~  172 (389)
                      |+.+++.+..... ...+..++|+|+++.|+.+. ++.|++||+.+++.......++...+                 .+
T Consensus        96 d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           96 DLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             ETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             ECCCCccccceec-CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            9998876311111 35688999999999988875 78999999988876543322333222                 58


Q ss_pred             EEEecCCCCeEEEEeCCC----------------------------------cEEEEecCCCCCC-Cccc---eeeeccC
Q 016457          173 VHFVPNNQNKVVSASVDG----------------------------------LICTFDTGGDIND-DDLL---ESVINVG  214 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~-~~~~---~~~~~~~  214 (389)
                      ++|+|+|+ .|++++.|.                                  .|++||+.++... ...+   ..+..+.
T Consensus       174 ~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            99999996 888877552                                  7889999854210 0000   1123466


Q ss_pred             CceeeEEEecCCCcEEEEEecCC----cEEEEE----cCCCceeEEee---cccccccCCccCCCCCcee-----eeccc
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIE----TLSIWD----WKDGQNVASFE---NARSLASDSWTLDDVDYFV-----DCHYP  278 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~----~i~i~d----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~-----~~~~~  278 (389)
                      ..+..++|+ ++++++++....+    .|.+||    +.+++....+.   .           .|...+.     .+.|+
T Consensus       253 ~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          253 YYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE-----------SRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             EEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE-----------CSSSCSSSSSCCCCEEC
T ss_pred             ceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc-----------cCCceEccccCCccEEC
Confidence            788999999 5577776644332    488899    77765543331   1           1345555     78999


Q ss_pred             CCCCeEEEEEecCCc--eEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecC-----CC
Q 016457          279 GEGENLWVIGGTGAG--TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE-----DG  351 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~-----dg  351 (389)
                      |+|+.+++++...+|  .|++|++.+++.       ..+. .+...|..+         .++ +++.|+..+.     ++
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~~-------~~lt-~~~~~v~~~---------~~~-d~~~i~~~~~~~~~~~~  382 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVENA-------IQIT-SGKWEAINI---------FRV-TQDSLFYSSNEFEEYPG  382 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCSTTC-------EECS-CSSSCEEEE---------EEE-CSSEEEEEESCGGGCTT
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCCce-------Eecc-cCceEEEEE---------EEE-eCCEEEEEEecCCCCCc
Confidence            999966555565665  566677766543       4443 444456665         455 6555554443     48


Q ss_pred             eEEEEeccC
Q 016457          352 RLCCWLSDD  360 (389)
Q Consensus       352 ~v~iW~~~~  360 (389)
                      .+++|.++.
T Consensus       383 ~~~l~~~~~  391 (719)
T 1z68_A          383 RRNIYRISI  391 (719)
T ss_dssp             CBEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            899999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.6e-21  Score=170.42  Aligned_cols=282  Identities=11%  Similarity=0.096  Sum_probs=185.6

Q ss_pred             cCCCCeEEEEec----CCeEEEEeC--CCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC----CeEEEEEccC--C
Q 016457           47 KNDWSLMAVSLS----TNVVKLYSP--VTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD----GTIRAWDTRS--F  114 (389)
Q Consensus        47 ~~~~~~l~~~~~----d~~i~iw~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~--~  114 (389)
                      .+...++++|+.    ++.|.+|.+  .+++.......+...+..++|+|++  ++|++++.+    +.|.+|++..  +
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg--~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADG--KFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTS--SEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCC--CEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            344456666643    568999876  4454433222266778889999999  788888875    7999999875  4


Q ss_pred             e--EEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeee-----ec--------ccCCeeEEEEecC
Q 016457          115 H--EVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE-----ES--------HVEDVTQVHFVPN  178 (389)
Q Consensus       115 ~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~-----~~--------~~~~v~~~~~~~~  178 (389)
                      +  .+.....+......+++  +++.+++++. ++.|.+|++.....+..+.     .+        +...+.+++|+|+
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence            3  34444445567778888  7777887775 8899999997543332211     01        1223588999999


Q ss_pred             CCCeEEE-EeCCCcEEEEecCCCCC----C-Ccc----ceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCC
Q 016457          179 NQNKVVS-ASVDGLICTFDTGGDIN----D-DDL----LESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDG  247 (389)
Q Consensus       179 ~~~~l~~-~~~d~~i~i~d~~~~~~----~-~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~  247 (389)
                      ++ ++++ ...++.|.+|++.....    . ...    ..........+..++|+ ++++++++++ .++.|.+|++.++
T Consensus       166 g~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          166 GK-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             SS-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEETT
T ss_pred             CC-EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEecCC
Confidence            96 5544 44588999999884321    0 000    11223345567899999 7788777776 6899999999876


Q ss_pred             cee--EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec-C-CceEEEEEec--cCCccccCCCeEEEecccce
Q 016457          248 QNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT-G-AGTVGYFPVN--YGGAATIGPPEAVLVGGHTA  321 (389)
Q Consensus       248 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~-dg~i~i~~~~--~~~~~~~~~~~~~~~~~h~~  321 (389)
                      +..  ..+....         .+......++|+|+|+  +|+++. . ++.|.+|++.  +++.    ..+..+. . ..
T Consensus       244 ~~~~~~~~~~~~---------~~~~~~~~i~~spdg~--~l~v~~~~~~~~i~v~~~~~~~g~~----~~~~~~~-~-g~  306 (361)
T 3scy_A          244 MLDEIQTVAADT---------VNAQGSGDIHLSPDGK--YLYASNRLKADGVAIFKVDETNGTL----TKVGYQL-T-GI  306 (361)
T ss_dssp             EEEEEEEEESCS---------SCCCCEEEEEECTTSS--EEEEEECSSSCEEEEEEECTTTCCE----EEEEEEE-C-SS
T ss_pred             ceEEeEEEecCC---------CCCCCcccEEECCCCC--EEEEECCCCCCEEEEEEEcCCCCcE----EEeeEec-C-CC
Confidence            542  2222111         1234567999999999  554444 4 5899999996  3332    0122332 2 33


Q ss_pred             eeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccC
Q 016457          322 VVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDD  360 (389)
Q Consensus       322 ~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~  360 (389)
                      .+..+         +|+|||++|++++ .++.|.+|+++.
T Consensus       307 ~~~~~---------~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          307 HPRNF---------IITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             CCCEE---------EECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCceE---------EECCCCCEEEEEECCCCCEEEEEEEC
Confidence            45666         9999999888876 679999988764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=3.4e-22  Score=176.46  Aligned_cols=292  Identities=10%  Similarity=-0.017  Sum_probs=198.2

Q ss_pred             eeeeeec-CcceEE-----EeecCCCCeEEEEec-CC--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457           31 SIQTNFG-DDYVFE-----IVPKNDWSLMAVSLS-TN--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS  101 (389)
Q Consensus        31 ~~~~~~~-~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~  101 (389)
                      .+..+.. ......     .+|+|||+.|+.++. ++  .|.+||+.+++......++...+..+.|+|++  +.|+.++
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg--~~l~~~~   99 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD--DALFYVK   99 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS--SEEEEEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC--CEEEEEe
Confidence            4444444 333444     789999999999887 66  48889999998887777776666678899999  7999999


Q ss_pred             cCCeEEEEEccCCeEEEEEEcCCCCeEEEE--EeCCCCeEEEee----------------------cCCeEEEEECcCCc
Q 016457          102 SDGTIRAWDTRSFHEVWSVTAGSQEIFCFS--FGGSTDYLLAAG----------------------CGSQIQFWDWRNKK  157 (389)
Q Consensus       102 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~----------------------~d~~i~iwd~~~~~  157 (389)
                      .++.|.+||+.+++....+..+...+....  ++|++..++...                      .+..|.+||+.+++
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            999999999999988777777655554444  477777776421                      24789999999886


Q ss_pred             eeeeeeecccCCeeEEEEec-CCCCeEEEEeCC------CcEEEEecCCCCCCCccceeeeccC--CceeeEEEecCCCc
Q 016457          158 QVACLEESHVEDVTQVHFVP-NNQNKVVSASVD------GLICTFDTGGDINDDDLLESVINVG--TSVGKVGFFGETNK  228 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~  228 (389)
                      .....  .+...+..+.|+| +++ .|+....+      ..|.++|..++.     ...+..+.  ..+...+|+ ++++
T Consensus       180 ~~~l~--~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~s-pdg~  250 (388)
T 3pe7_A          180 STVIL--QENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWV-PDGS  250 (388)
T ss_dssp             EEEEE--EESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEEC-TTSS
T ss_pred             eEEee--cCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceEC-CCCC
Confidence            55443  3667789999999 886 77766653      378888877432     23333333  357788999 6676


Q ss_pred             EEEE-EecCC----cEEEEEcCCCceeEE--eecccccccCCccCCCC-CceeeecccCCCCeEEEEE-------ecCCc
Q 016457          229 HLWC-LTHIE----TLSIWDWKDGQNVAS--FENARSLASDSWTLDDV-DYFVDCHYPGEGENLWVIG-------GTGAG  293 (389)
Q Consensus       229 ~l~~-~~~d~----~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~-------g~~dg  293 (389)
                      .|+. +..++    .|++||+.+++....  +....          +. .......|+|+|+.+++..       ...+.
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS----------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE----------EEEECTTSSEEEEEECCC------------CCCC
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce----------eeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            5544 33322    399999998874332  22100          00 0122347999998432221       14567


Q ss_pred             eEEEEEeccCCccccCCCeEEEecccce-----------eeeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEeccC
Q 016457          294 TVGYFPVNYGGAATIGPPEAVLVGGHTA-----------VVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSDD  360 (389)
Q Consensus       294 ~i~i~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~~  360 (389)
                      .|++||+.+++.       ..+. .|..           .+..+         +|+|||++|+.++ .+|...||.++-
T Consensus       321 ~i~~~d~~~~~~-------~~l~-~~~~~~~~~~~~~~~~~~~~---------~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          321 FLYVFNMKNGTQ-------HRVA-RHDTSWKVFEGDRQVTHPHP---------SFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EEEEEETTTTEE-------EEEE-ECCCCCCCBTTBSSTTCCCC---------EECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             EEEEEeccCCce-------EEec-cccCcccccccccccCCCCc---------cCCCCCCEEEEEecCCCceeEEEEEC
Confidence            899999998764       4444 3433           23444         8999998777654 678888888764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.2e-22  Score=181.09  Aligned_cols=199  Identities=10%  Similarity=0.058  Sum_probs=151.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce----------eee-----eecCCCCcEEEEEEeCCCCCCEEE----
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ----------YSG-----ECKGHSSTVNQISFSGPSTPHVLH----   98 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~----------~~~-----~~~~~~~~v~~i~~~~~~~~~~l~----   98 (389)
                      ...++.+++++++.++++++.++ +++|+.....          .+.     ....+...|.+++|+|++  ++|+    
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~lav~~~  112 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN--LTLSACMM  112 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS--CEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC--CEEEEEEe
Confidence            44688999999999999999887 8888753210          000     011256679999999999  6888    


Q ss_pred             EEecCCeEEEEEccCC--------eE---EEEEEcCCCCeEEEEEeCC-CCeEEEeecCCeEEEEECcCCceeeeeeecc
Q 016457           99 SCSSDGTIRAWDTRSF--------HE---VWSVTAGSQEIFCFSFGGS-TDYLLAAGCGSQIQFWDWRNKKQVACLEESH  166 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  166 (389)
                      +|+.|++|++||+.++        +.   +..+.+|...|.+++|+|+ +..+++++.||.|++||++++..+.... +|
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~  191 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PS  191 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CG
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CC
Confidence            7889999999998765        22   4455668899999999998 6778888889999999999987766665 68


Q ss_pred             cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-------cCCceeeEEEecCCCcEEEE-EecCC-
Q 016457          167 VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-------VGTSVGKVGFFGETNKHLWC-LTHIE-  237 (389)
Q Consensus       167 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~-~~~d~-  237 (389)
                      ...|++++|+|++. +|++|+.||.|++||.+..     ....+..       |...+.+++|+ +++.++++ .+.+| 
T Consensus       192 ~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          192 TVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTLQ-----EKKVIPCPPFYESDHPVRVLDVLWI-GTYVFAIVYAAADGT  264 (434)
T ss_dssp             GGCEEEEEECTTSS-CEEEEETTSCEEEECTTCC-----EEEEECCCTTCCTTSCEEEEEEEEE-ETTEEEEEEEETTCC
T ss_pred             CCceeEEEEcCCCC-EEEEEcCCCcEEEEccCCc-----ccccccCCcccCCCCceeEEEEEEe-cCceEEEEEccCCCc
Confidence            89999999999995 9999999999999999821     1122211       23378999999 55555544 33443 


Q ss_pred             -----cEEEEEcCCC
Q 016457          238 -----TLSIWDWKDG  247 (389)
Q Consensus       238 -----~i~i~d~~~~  247 (389)
                           .+++|++...
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence                 3899999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.5e-21  Score=174.05  Aligned_cols=160  Identities=11%  Similarity=0.078  Sum_probs=129.7

Q ss_pred             CcceEEEeecCCCCeEE----EEecCCeEEEEeCCCc--------ee---eeeecCCCCcEEEEEEeCCCCCCEEEEEec
Q 016457           38 DDYVFEIVPKNDWSLMA----VSLSTNVVKLYSPVTG--------QY---SGECKGHSSTVNQISFSGPSTPHVLHSCSS  102 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~----~~~~d~~i~iw~~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  102 (389)
                      ...|.+++|+|++++|+    +|+.|+.|+|||+.++        +.   +..+.+|...|.+++|+|+.. .+|++++.
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEET
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEEC
Confidence            45799999999999999    6788999999998765        22   355677999999999999832 79999999


Q ss_pred             CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee------cccCCeeEEEEe
Q 016457          103 DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE------SHVEDVTQVHFV  176 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~  176 (389)
                      ||+|++||++++..+.....|...|.+++|+|++.+|++++.||.|++||++ ++....+..      .|...+.++.|+
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            9999999999998777777788899999999999999999999999999998 555554431      123379999999


Q ss_pred             cCCCCeEEE-EeCCC------cEEEEecCCC
Q 016457          177 PNNQNKVVS-ASVDG------LICTFDTGGD  200 (389)
Q Consensus       177 ~~~~~~l~~-~~~d~------~i~i~d~~~~  200 (389)
                      +++. ++++ +..+|      .+++|+++..
T Consensus       250 ~~~~-~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYV-FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTE-EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCce-EEEEEccCCCccCCCCceEEEEeccC
Confidence            9874 4433 33343      3899999854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=5.2e-22  Score=189.41  Aligned_cols=307  Identities=8%  Similarity=-0.021  Sum_probs=201.1

Q ss_pred             CCCCeEEEEecCc--eeeeeecCc----ceEEEeecCCCCeEEEEec---------CCeEEEEeCCCceeeeeecCCCCc
Q 016457           18 DNVNSIKRFGLKN--SIQTNFGDD----YVFEIVPKNDWSLMAVSLS---------TNVVKLYSPVTGQYSGECKGHSST   82 (389)
Q Consensus        18 ~~~~~i~~w~~~~--~~~~~~~~~----~v~~~~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~   82 (389)
                      +.+++|++|+...  ....+.+..    .|.+++|+|||++|++++.         ++.|++||+.+++.+.... ....
T Consensus        33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~  111 (719)
T 1z68_A           33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRP  111 (719)
T ss_dssp             CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSS
T ss_pred             cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcc
Confidence            3588999999853  333343322    3999999999999999876         6899999999887731111 1256


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE-EcCCCCe-----------------EEEEEeCCCCeEEEeec
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV-TAGSQEI-----------------FCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~  144 (389)
                      +..++|+|++  +.|+++. ++.|++|++.+++..... .++...|                 .+++|+|+++.|+.++.
T Consensus       112 ~~~~~~SPDG--~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          112 IQYLCWSPVG--SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             BCCEEECSST--TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             cccceECCCC--CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            8899999999  6888875 789999999888765432 1222222                 48999999999998876


Q ss_pred             CC----------------------------------eEEEEECcCCcee--------eeeeecccCCeeEEEEecCCCCe
Q 016457          145 GS----------------------------------QIQFWDWRNKKQV--------ACLEESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       145 d~----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~  182 (389)
                      |.                                  .|++||+.+++..        ..+. .|...+..++|+|++. +
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD~~-~  266 (719)
T 1z68_A          189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTDER-V  266 (719)
T ss_dssp             ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSSSE-E
T ss_pred             CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCCCe-E
Confidence            42                                  7889999887653        1122 4777899999999974 6


Q ss_pred             EEEEeCC----CcEEEEe----cCCCCCCCccce-eeeccCCcee-----eEEEecCCCcEEEE--EecCC--cEEEEEc
Q 016457          183 VVSASVD----GLICTFD----TGGDINDDDLLE-SVINVGTSVG-----KVGFFGETNKHLWC--LTHIE--TLSIWDW  244 (389)
Q Consensus       183 l~~~~~d----~~i~i~d----~~~~~~~~~~~~-~~~~~~~~i~-----~~~~~~~~~~~l~~--~~~d~--~i~i~d~  244 (389)
                      +++....    ..|.+||    ..++... .... ....+...+.     .+.|+ ++++.++.  +..++  .|.+||+
T Consensus       267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          267 CLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPVFS-YDAISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             EEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCEEC-TTSSCEEEEEECTTSCEEEEEESS
T ss_pred             EEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccEEC-CCCCeEEEEEEccCCceEEEEEEC
Confidence            6664433    2488899    6654211 1110 0134555666     78999 66664433  44555  6777787


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC----CceEEEEEecc--CCccccCCCeEEEe--
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG----AGTVGYFPVNY--GGAATIGPPEAVLV--  316 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~----dg~i~i~~~~~--~~~~~~~~~~~~~~--  316 (389)
                      .+++ ...+..            +...+..+.++ +++.+ ++++..    ++..++|.+..  +..     ....+.  
T Consensus       345 ~~~~-~~~lt~------------~~~~v~~~~~~-d~~~i-~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~~~l~~~  404 (719)
T 1z68_A          345 TVEN-AIQITS------------GKWEAINIFRV-TQDSL-FYSSNEFEEYPGRRNIYRISIGSYPP-----SKKCVTCH  404 (719)
T ss_dssp             CSTT-CEECSC------------SSSCEEEEEEE-CSSEE-EEEESCGGGCTTCBEEEEEECSSSSC-----CEEESSTT
T ss_pred             CCCc-eEeccc------------CceEEEEEEEE-eCCEE-EEEEecCCCCCceEEEEEEeCCCCCC-----CceeccCc
Confidence            7665 334433            23456666667 77743 344444    57888998864  211     011221  


Q ss_pred             -cccceeeeeccCCCcccCCCCCCCceeEEE-ecCC--CeEEEEeccCC
Q 016457          317 -GGHTAVVRSVLPMPSVQGRPAQSHGIFGWT-GGED--GRLCCWLSDDS  361 (389)
Q Consensus       317 -~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s-~~~d--g~v~iW~~~~~  361 (389)
                       .+|...+..+         .|+|++++++. ++.+  ..+.+|++...
T Consensus       405 ~~~~~~~~~~~---------~~s~dg~~l~~~~s~~~~p~~~l~d~~~g  444 (719)
T 1z68_A          405 LRKERCQYYTA---------SFSDYAKYYALVCYGPGIPISTLHDGRTD  444 (719)
T ss_dssp             TTTTTBCBEEE---------EECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred             cCCCCCceEEE---------EECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence             1255556666         89999988764 4433  46888988654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=2.1e-21  Score=168.68  Aligned_cols=266  Identities=9%  Similarity=0.001  Sum_probs=180.9

Q ss_pred             CccccCCCCeEEEEecCc--eeeeeecCc--ceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCC------CC
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNFGDD--YVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGH------SS   81 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~------~~   81 (389)
                      ..++++.++.|++||..+  .+..+....  .+..++|+|+++.++++ ..++.|.+||+.+++....+..+      ..
T Consensus        13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~   92 (349)
T 1jmx_B           13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR   92 (349)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence            345677899999999863  444554433  68899999999866544 46899999999999887776532      23


Q ss_pred             cEEEEEEeCCCCCCEEEEEecC------------CeEEEEEccCCe---EEEEEEcCCCCeEEEEEeCCCCeEEEeecCC
Q 016457           82 TVNQISFSGPSTPHVLHSCSSD------------GTIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      .+..++|+|++  ++|++++.+            +.|.+||+.+++   .+..+..+ ..+.+++|+|++. +++++  +
T Consensus        93 ~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l~~~~--~  166 (349)
T 1jmx_B           93 SMYSFAISPDG--KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-LYVAG--P  166 (349)
T ss_dssp             CSSCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-EEEES--S
T ss_pred             cccceEECCCC--CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-EEEcc--C
Confidence            37889999999  688888765            899999998843   33445443 4688999999988 66654  4


Q ss_pred             eEEEEECcCCceeeeeeecccC-----------------------CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVE-----------------------DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND  203 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~-----------------------~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (389)
                      .|.+||+.+++.+..+......                       ....+++++++............+..+|..++.  
T Consensus       167 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--  244 (349)
T 1jmx_B          167 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--  244 (349)
T ss_dssp             SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--
T ss_pred             cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc--
Confidence            4999999998887766521100                       234456655432000000001112224444321  


Q ss_pred             CccceeeeccCCceeeEEEecC-CCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC
Q 016457          204 DDLLESVINVGTSVGKVGFFGE-TNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE  282 (389)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (389)
                       ............+..++++ + ++++++++  ++.|.+||+.+++.+..+...             ..+..++|+|+++
T Consensus       245 -~~~~~~~~~~~~~~~~~~s-p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~  307 (349)
T 1jmx_B          245 -THTQEFADLTELYFTGLRS-PKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-------------HTYYCVAFDKKGD  307 (349)
T ss_dssp             -EEEEEEEECSSCEEEEEEC-SSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-------------SCCCEEEECSSSS
T ss_pred             -EEecccccCCCcceeeEec-CCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-------------CCccceEECCCCC
Confidence             1111222345677889999 5 78888877  889999999999888777632             3467899999998


Q ss_pred             eEEEEEecCCceEEEEEeccCCc
Q 016457          283 NLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       283 ~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                        +|++++.++.|++||..+++.
T Consensus       308 --~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          308 --KLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             --CEEEESBSSEEEEEETTTTEE
T ss_pred             --EEEEecCCCeEEEEeccccce
Confidence              455567889999999988765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=5.5e-22  Score=184.51  Aligned_cols=233  Identities=11%  Similarity=0.057  Sum_probs=171.8

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEec-CCeEEEEEccCCeEEEEEEcCC-CCeEEEEEeCCCCeEEEeec---CCeEEEEECc
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSS-DGTIRAWDTRSFHEVWSVTAGS-QEIFCFSFGGSTDYLLAAGC---GSQIQFWDWR  154 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~  154 (389)
                      ..+|.+++|+|||  +.|++++. ||+++||++.+++... +..+. ..+..++|+|+ ..++++..   +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG--~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDG--DKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETT--TEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCC--CeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            5679999999999  78988876 9999999997666544 44444 68999999987 55555543   4555665554


Q ss_pred             C--CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457          155 N--KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       155 ~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      .  ......+.  ....+...+|+|+++..+++.+.++.+.+||+.++.     ...+..+..  .+++|+ ++|++|++
T Consensus        97 ~~~~g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----~~~l~~~~~--~~~~~s-pDG~~la~  166 (582)
T 3o4h_A           97 TSRPGEEQRLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----LRELARLPG--FGFVSD-IRGDLIAG  166 (582)
T ss_dssp             TTSTTCCEECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----EEEEEEESS--CEEEEE-EETTEEEE
T ss_pred             ccCCCcccccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----EEEeecCCC--ceEEEC-CCCCEEEE
Confidence            3  22222333  223355678888886555555556666799998652     233333333  789999 78899998


Q ss_pred             EecC----CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc--eEEEEEeccCCcc
Q 016457          233 LTHI----ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG--TVGYFPVNYGGAA  306 (389)
Q Consensus       233 ~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg--~i~i~~~~~~~~~  306 (389)
                      ++.+    +.|++||+.+++.. .+..            |...+..++|+|||+  +|+++..++  .|++||+.+++. 
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~------------~~~~~~~~~~SpDG~--~l~~~~~~~~~~i~~~d~~~~~~-  230 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLR-VFDS------------GEGSFSSASISPGMK--VTAGLETAREARLVTVDPRDGSV-  230 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCE-EECC------------SSCEEEEEEECTTSC--EEEEEECSSCEEEEEECTTTCCE-
T ss_pred             EEEcCCCCeEEEEEcCCCCCce-Eeec------------CCCccccceECCCCC--EEEEccCCCeeEEEEEcCCCCcE-
Confidence            8777    78999999888755 4444            557889999999999  677887888  899999998775 


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCC--------CCCCceeEEEecCCCeEEEEec
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRP--------AQSHGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--------~s~~~~~l~s~~~dg~v~iW~~  358 (389)
                            . +..+|...+..+         +        |+|||.++++++.||.+++|++
T Consensus       231 ------~-~~~~~~~~~~~~---------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          231 ------E-DLELPSKDFSSY---------RPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ------E-ECCCSCSHHHHH---------CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ------E-EccCCCcChhhh---------hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                  3 334777777777         6        9999999999999999999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=2.3e-20  Score=163.13  Aligned_cols=264  Identities=12%  Similarity=0.167  Sum_probs=176.7

Q ss_pred             CCCCeEEEEecCc------eeeeeecCcceEEEeecCCCCeEEEEecC----CeEEEEeCCC--ce--eeeeecCCCCcE
Q 016457           18 DNVNSIKRFGLKN------SIQTNFGDDYVFEIVPKNDWSLMAVSLST----NVVKLYSPVT--GQ--YSGECKGHSSTV   83 (389)
Q Consensus        18 ~~~~~i~~w~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iw~~~~--~~--~~~~~~~~~~~v   83 (389)
                      +.++.|.+|.+..      .+... ....+..++|+|++++|++++.+    +.|.+|++..  ++  .+.....+....
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p  102 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP  102 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence            4567899997631      12222 35667789999999999999875    7999998765  43  333444455667


Q ss_pred             EEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEE----EEE--c--------CCCCeEEEEEeCCCCeEEEeec-CCe
Q 016457           84 NQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVW----SVT--A--------GSQEIFCFSFGGSTDYLLAAGC-GSQ  147 (389)
Q Consensus        84 ~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~----~~~--~--------~~~~v~~~~~~~~~~~l~~~~~-d~~  147 (389)
                      ..+++  ++  ++|++++ .++.|.+|++.....+.    .+.  +        +...+.+++|+|+++.+++++. ++.
T Consensus       103 ~~~~~--dg--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          103 CYLTT--NG--KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             EEEEE--CS--SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEE--CC--CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence            77888  56  5666655 68899999997543221    111  1        1223588999999998887776 789


Q ss_pred             EEEEECcCCce------e------eeeeecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCccceeee---
Q 016457          148 IQFWDWRNKKQ------V------ACLEESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDLLESVI---  211 (389)
Q Consensus       148 i~iwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---  211 (389)
                      |.+|++.....      +      ..........+..++|+|+++ ++++++ .++.|.+||+.++.  ...+....   
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~~~~~g~--~~~~~~~~~~~  255 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-FAYLINEIGGTVIAFRYADGM--LDEIQTVAADT  255 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTCEEEEEEEETTE--EEEEEEEESCS
T ss_pred             EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC-EEEEEcCCCCeEEEEEecCCc--eEEeEEEecCC
Confidence            99998875431      1      122223456688999999996 666665 68999999998442  11122221   


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecC--CcEEEEEcC--CCc--eeEEeecccccccCCccCCCCCceeeecccCCCCeEE
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHI--ETLSIWDWK--DGQ--NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLW  285 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  285 (389)
                      .+......++|+ +++++|+++..+  +.|.+|++.  +++  .+..+..             ...+..++|+|+|+  +
T Consensus       256 ~~~~~~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-------------g~~~~~~~~spdg~--~  319 (361)
T 3scy_A          256 VNAQGSGDIHLS-PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-------------GIHPRNFIITPNGK--Y  319 (361)
T ss_dssp             SCCCCEEEEEEC-TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-------------SSCCCEEEECTTSC--E
T ss_pred             CCCCCcccEEEC-CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-------------CCCCceEEECCCCC--E
Confidence            222446789999 778888766654  899999986  344  2333321             14577899999998  5


Q ss_pred             EEEec-CCceEEEEEec--cCCc
Q 016457          286 VIGGT-GAGTVGYFPVN--YGGA  305 (389)
Q Consensus       286 l~~g~-~dg~i~i~~~~--~~~~  305 (389)
                      |++++ .++.|.+|+++  +++.
T Consensus       320 l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          320 LLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEECCCCCEEEEEEECCCCcE
Confidence            56555 67899997665  4443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.5e-20  Score=162.96  Aligned_cols=280  Identities=14%  Similarity=0.086  Sum_probs=180.7

Q ss_pred             eEEEEecC--CeEEEEeC--CCceeee--eec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc-CCeEEEEEEcC
Q 016457           52 LMAVSLST--NVVKLYSP--VTGQYSG--ECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR-SFHEVWSVTAG  123 (389)
Q Consensus        52 ~l~~~~~d--~~i~iw~~--~~~~~~~--~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~  123 (389)
                      .+++|+..  +.|.+|++  .+++...  ... .....+..++|+|++  ++|++++.+ .|.+|++. +++........
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg--~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~   80 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER--KNIYGAAMK-KWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS--SEEEEEEBT-EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC--CEEEEEccc-eEEEEEECCCCCEEEeeEee
Confidence            45566553  56877765  4565422  221 233468899999999  788888888 99999997 77765433311


Q ss_pred             -CCCeEEEEEeCCCCe--EEEee-------------cCCeEEEEECc-CCceeeeeee---cccCCeeEEEEecCCCCeE
Q 016457          124 -SQEIFCFSFGGSTDY--LLAAG-------------CGSQIQFWDWR-NKKQVACLEE---SHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       124 -~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l  183 (389)
                       ...+.+++|+|+++.  ++++.             .++.+.+|++. .++....+..   .+...+.+++|+|+|+ ++
T Consensus        81 ~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l  159 (365)
T 1jof_A           81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YL  159 (365)
T ss_dssp             CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EE
T ss_pred             cCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EE
Confidence             133566899999885  33442             58899999997 4555433331   2456799999999996 77


Q ss_pred             EEEe-CCCcEEEEecC-CCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcC--CCceeE---Ee
Q 016457          184 VSAS-VDGLICTFDTG-GDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWK--DGQNVA---SF  253 (389)
Q Consensus       184 ~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~  253 (389)
                      +++. .++.|++||+. ++.  ...+....  .+...+..++|+ ++++++++++. ++.|.+|++.  +++...   .+
T Consensus       160 ~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          160 YSADLTANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EEEETTTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            7665 46799999998 442  11122222  135678899999 77888877765 6899999865  455432   22


Q ss_pred             ecccccccCCccCCCCC------ceeeec-ccCCCCeEEEEEecC--C----ceEEEEEec-cCCccccCCCeEE---Ee
Q 016457          254 ENARSLASDSWTLDDVD------YFVDCH-YPGEGENLWVIGGTG--A----GTVGYFPVN-YGGAATIGPPEAV---LV  316 (389)
Q Consensus       254 ~~~~~~~~~~~~~~~~~------~i~~~~-~~~~~~~~~l~~g~~--d----g~i~i~~~~-~~~~~~~~~~~~~---~~  316 (389)
                      ....   .. + .+|..      .+..++ |+|+|+  +|++++.  +    +.|.+|++. +++.       ..   ..
T Consensus       237 ~~~~---~~-~-~g~~~~~~~~~~~~~i~~~spdG~--~l~v~~~~~~~~~~~~i~v~~~~~~g~~-------~~~~~~~  302 (365)
T 1jof_A          237 PLIP---PG-I-PDRDPETGKGLYRADVCALTFSGK--YMFASSRANKFELQGYIAGFKLRDCGSI-------EKQLFLS  302 (365)
T ss_dssp             ESSC---TT-C-CCBCTTTSSBSEEEEEEEECTTSS--EEEEEEEESSTTSCCEEEEEEECTTSCE-------EEEEEEE
T ss_pred             EcCC---CC-c-CCcccccccccccccEEEECCCCC--EEEEECCCCCCCCCCeEEEEEECCCCCE-------EEeeeee
Confidence            2110   00 0 00122      578899 999999  4444432  3    289999996 4443       22   11


Q ss_pred             cccceeeeeccCCCcccCCCCCC---CceeEEEecCC-CeEEEEeccCC
Q 016457          317 GGHTAVVRSVLPMPSVQGRPAQS---HGIFGWTGGED-GRLCCWLSDDS  361 (389)
Q Consensus       317 ~~h~~~v~~~~~~~~~~~~~~s~---~~~~l~s~~~d-g~v~iW~~~~~  361 (389)
                      ..+...+..+         +|+|   ||++|++++.+ +.|.+|+++..
T Consensus       303 ~~~~~~~~~~---------a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          303 PTPTSGGHSN---------AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCC---------CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCCcccc---------eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            1233334455         8999   89999998764 89999999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=6.6e-20  Score=160.30  Aligned_cols=264  Identities=8%  Similarity=0.012  Sum_probs=177.4

Q ss_pred             CeEEEEecC---ceeeeee-----cCcceEEEeecCCCCeEEEEecCCeEEEEeCC-CceeeeeecCC-CCcEEEEEEeC
Q 016457           21 NSIKRFGLK---NSIQTNF-----GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV-TGQYSGECKGH-SSTVNQISFSG   90 (389)
Q Consensus        21 ~~i~~w~~~---~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~-~~~v~~i~~~~   90 (389)
                      +.|..|++.   ..+..+.     +...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+..++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            467777652   1222221     13468899999999999998877 99999997 77665433211 12355689999


Q ss_pred             CCCCCE--EEEEe-------------cCCeEEEEEcc-CCeEEEEEE----cCCCCeEEEEEeCCCCeEEEeec-CCeEE
Q 016457           91 PSTPHV--LHSCS-------------SDGTIRAWDTR-SFHEVWSVT----AGSQEIFCFSFGGSTDYLLAAGC-GSQIQ  149 (389)
Q Consensus        91 ~~~~~~--l~s~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~  149 (389)
                      ++  ++  +++++             .++++.+|++. +++....+.    .+...+.+++|+|++++++++.. ++.|.
T Consensus        93 dg--~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~  170 (365)
T 1jof_A           93 NT--RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW  170 (365)
T ss_dssp             CC--EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CC--CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence            99  53  44553             68999999997 466554443    24567999999999998887765 68999


Q ss_pred             EEECc-CCcee--eeeee-cccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCcc-ceeee-------ccCC-
Q 016457          150 FWDWR-NKKQV--ACLEE-SHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDDL-LESVI-------NVGT-  215 (389)
Q Consensus       150 iwd~~-~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~-------~~~~-  215 (389)
                      +||+. +++..  ..+.. .+...+..++|+|+++ ++++++. ++.|.+|++......... ...+.       ++.. 
T Consensus       171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~  249 (365)
T 1jof_A          171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred             EEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence            99998 66543  23321 1356789999999996 7766664 789999987621101100 01111       1121 


Q ss_pred             -----ceeeEE-EecCCCcEEEEEecC-C-----cEEEEEcC-CCceeEE---eecccccccCCccCCCCCceeeecccC
Q 016457          216 -----SVGKVG-FFGETNKHLWCLTHI-E-----TLSIWDWK-DGQNVAS---FENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       216 -----~i~~~~-~~~~~~~~l~~~~~d-~-----~i~i~d~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                           .+..++ |+ +++++|+++..+ +     .|.+|++. +++....   ...            +......++|+|
T Consensus       250 ~~~~~~~~~i~~~s-pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~a~sp  316 (365)
T 1jof_A          250 TGKGLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT------------PTSGGHSNAVSP  316 (365)
T ss_dssp             TSSBSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC------------SSCCTTCCCEEE
T ss_pred             cccccccccEEEEC-CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec------------CCCCcccceecC
Confidence                 478899 88 778887776643 3     89999996 5654332   211            224566789999


Q ss_pred             ---CCCeEEEEEecC-CceEEEEEeccC
Q 016457          280 ---EGENLWVIGGTG-AGTVGYFPVNYG  303 (389)
Q Consensus       280 ---~~~~~~l~~g~~-dg~i~i~~~~~~  303 (389)
                         +|+  +|++++. ++.|.+|++...
T Consensus       317 ~~~dg~--~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          317 CPWSDE--WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTCTT--EEEEECSSSCEEEEEEEETT
T ss_pred             CCcCCC--EEEEEEcCCCeEEEEEEchh
Confidence               788  6777665 489999999865

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.87  E-value=1.5e-20  Score=166.30  Aligned_cols=274  Identities=9%  Similarity=-0.014  Sum_probs=184.3

Q ss_pred             eEEEeecCCCCeEEEEecC---CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           41 VFEIVPKNDWSLMAVSLST---NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      +.+++|+|||++|+.+...   ..|.+||+.+++......++......+.|+|++  +.|+.++.++.|.+||+.+++..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg--~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE--RAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS--SEEEEEETTTEEEEEETTTCCEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC--CEEEEEEcCCcEEEEECCCCCcE
Confidence            6788999999998877643   478999998887655444333333347899999  79999999999999999988876


Q ss_pred             EEEEcCCCCeEE-------------------EEEeCCCCeEEEe-----ecCCeEEEEECcCCceeeeeeecccCCeeEE
Q 016457          118 WSVTAGSQEIFC-------------------FSFGGSTDYLLAA-----GCGSQIQFWDWRNKKQVACLEESHVEDVTQV  173 (389)
Q Consensus       118 ~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  173 (389)
                      .....+......                   +.|+|++..++..     ..+..|.+||+.+++.....  .+...+..+
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~  193 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHP  193 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccc
Confidence            666654332222                   3456666665544     34678999999887765444  366778999


Q ss_pred             EEec-CCCCeEEEEeCC------CcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEEEEEecC-----CcE
Q 016457          174 HFVP-NNQNKVVSASVD------GLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHLWCLTHI-----ETL  239 (389)
Q Consensus       174 ~~~~-~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d-----~~i  239 (389)
                      .|+| ++. .|+..+.+      ..|.+||+.++.     ...+..+  ...+..++|+ ++++.|+..+.+     +.|
T Consensus       194 ~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          194 IYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             EEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEE
T ss_pred             eECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEEC-CCCCEEEEEecCCCCccceE
Confidence            9999 674 66665543      368888887432     2222222  2357788999 677766666543     349


Q ss_pred             EEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCCeEEEEEec----------------CCceEEEEEecc
Q 016457          240 SIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGT----------------GAGTVGYFPVNY  302 (389)
Q Consensus       240 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~----------------~dg~i~i~~~~~  302 (389)
                      ++||+.+++.......              .... +.|+| +|+  ++++++                .++.|++||+.+
T Consensus       267 ~~~d~~~g~~~~l~~~--------------~~~~-~~~s~~dg~--~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          267 YKANPETLENEEVMVM--------------PPCS-HLMSNFDGS--LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEECTTTCCEEEEEEC--------------CSEE-EEEECSSSS--EEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             EEEECCCCCeEEeeeC--------------CCCC-CCccCCCCc--eEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            9999988765433221              1122 78999 998  555433                347899999987


Q ss_pred             CCccccCCCeEEEeccccee-----------eeeccCCCcccCCCCCCCceeEEEec-CCCeEEEEecc
Q 016457          303 GGAATIGPPEAVLVGGHTAV-----------VRSVLPMPSVQGRPAQSHGIFGWTGG-EDGRLCCWLSD  359 (389)
Q Consensus       303 ~~~~~~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~v~iW~~~  359 (389)
                      ++.       ..+. .|...           +..+         +|+|||++|+.++ .++...+|.++
T Consensus       330 ~~~-------~~l~-~~~~~~~~~~~~~~~~~~~~---------~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          330 KSA-------QKLC-KHSTSWDVLDGDRQITHPHP---------SFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TBC-------CEEE-ECCCCCCCBTTBSSTTCCCC---------EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             Cce-------EEcc-CCCCccccccccccCCCCCc---------eEccCCCeEEEEecCCCCceEEEEE
Confidence            764       3343 33321           2333         8999998877665 46777777765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=3.5e-20  Score=176.92  Aligned_cols=247  Identities=10%  Similarity=0.080  Sum_probs=169.8

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCc-----EEEEEEeCCCCCCEEEEEecC---------C
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST-----VNQISFSGPSTPHVLHSCSSD---------G  104 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~~l~s~~~d---------g  104 (389)
                      ....+++|+||+.+++++  |+.|++||+.+++....+.+|...     ...+.|+|++  ++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg--~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS--SEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC--CEEEEEECCeeeEEEccce
Confidence            346689999999888886  899999999999887777776543     3457899999  788888876         5


Q ss_pred             eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe--------------
Q 016457          105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV--------------  170 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--------------  170 (389)
                      .+.+||+.+++.. .+..+...+...+|+|+++.|+.+ .++.|++||+.+++..+....++...+              
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            5679999998764 355567789999999999998777 568999999988765432221232222              


Q ss_pred             ---eEEEEecCCCCeEEEEeCCC------------------------------------cEEEEecCC---CCCCCccce
Q 016457          171 ---TQVHFVPNNQNKVVSASVDG------------------------------------LICTFDTGG---DINDDDLLE  208 (389)
Q Consensus       171 ---~~~~~~~~~~~~l~~~~~d~------------------------------------~i~i~d~~~---~~~~~~~~~  208 (389)
                         ..+.|+|+|+ .|+.++.|.                                    .|++||+.+   +..  ....
T Consensus       171 ~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~--~~~~  247 (740)
T 4a5s_A          171 SAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN--ATSI  247 (740)
T ss_dssp             SSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC--CCEE
T ss_pred             CCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc--ceEE
Confidence               3589999996 787775332                                    477788875   410  0122


Q ss_pred             eee------ccCCceeeEEEecCCCcEEEEEec----CCcEEEEEcCCCc----ee--EEeecccccccCCccCCCCCce
Q 016457          209 SVI------NVGTSVGKVGFFGETNKHLWCLTH----IETLSIWDWKDGQ----NV--ASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       209 ~~~------~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      .+.      .+...+..++|+ ++++.++....    +..|.+||+.+++    +.  ..+...          .|...+
T Consensus       248 ~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~----------~~~~~v  316 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM----------STTGWV  316 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE----------CSSSCS
T ss_pred             EecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec----------cCCceE
Confidence            222      266678999999 66776555433    2379999998887    21  111000          033333


Q ss_pred             e-----eecccCCCCeEEEEEecCC--ceEEEEEeccCCc
Q 016457          273 V-----DCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGA  305 (389)
Q Consensus       273 ~-----~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~  305 (389)
                      .     ...|+|||+.+++.....+  ..|++|+..+++.
T Consensus       317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            3     6889999995432343344  4688888887664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=4.9e-19  Score=154.13  Aligned_cols=281  Identities=11%  Similarity=0.048  Sum_probs=191.6

Q ss_pred             CCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCC------
Q 016457           18 DNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGH------   79 (389)
Q Consensus        18 ~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~------   79 (389)
                      ..|+.|.+||..  +.+.++.....- .++|+||+++++++..          ++.|.+||..+++.+..+...      
T Consensus        28 ~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           28 LTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             cccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            347899999975  445555543333 8999999999999863          578999999998888776532      


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcC
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRN  155 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  155 (389)
                      ......++++|++  ++|+++..  +++|.+||+.+++.+.. +...  ....+.+.|.+ ..+++.+.||.+.+|++..
T Consensus       107 g~~p~~i~~spdg--~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          107 LNYDGLFRQTTDG--KFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             CCCGGGEEECTTS--SEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             CCCcceEEECCCC--CEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            2456789999999  68888764  58999999999988877 5432  23345667765 5666777799999999865


Q ss_pred             -Cceeee------eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec------c----CCcee
Q 016457          156 -KKQVAC------LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN------V----GTSVG  218 (389)
Q Consensus       156 -~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~----~~~i~  218 (389)
                       ++....      +. ....+ ..+.+.+++. .++..+.++.|.++|+.....  ........      .    .....
T Consensus       183 ~g~~~~~~~~~~~~~-~~~~~-~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          183 DGKVASQSRSKQMFS-VKDDP-IFIAPALDKD-KAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             TSSEEEEEECCCCSC-TTTSC-BCSCCEECSS-EEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSS
T ss_pred             CCcEeeeccccceEc-CCCCc-eEEEecccCC-EEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCee
Confidence             444311      11 12222 2334467774 677777899999999974321  11111100      0    11122


Q ss_pred             eEEEecCCCcEEEEEec-----------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          219 KVGFFGETNKHLWCLTH-----------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      .++++ +++..++++..           .+.|.+||+.+++.+..+..            + . ...++|+|+|+  +|+
T Consensus       258 ~~a~~-~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~------------~-~-p~~ia~spdg~--~l~  320 (361)
T 2oiz_A          258 LVGLH-RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG------------R-D-ALSMTIDQQRN--LML  320 (361)
T ss_dssp             CEEEE-TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC------------T-T-CCEEEEETTTT--EEE
T ss_pred             EEEEe-cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec------------C-C-eeEEEECCCCC--EEE
Confidence            37888 56556665543           34899999999999998875            3 3 89999999999  566


Q ss_pred             EecCCceEEEEEeccC--CccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          288 GGTGAGTVGYFPVNYG--GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                      +++. +.|.+||..++  +.      +..+. .+....+.+         +++|+|.
T Consensus       321 v~n~-~~v~v~D~~t~~l~~------~~~i~-~~G~~P~~~---------~~~p~G~  360 (361)
T 2oiz_A          321 TLDG-GNVNVYDISQPEPKL------LRTIE-GAAEASLQV---------QFHPVGG  360 (361)
T ss_dssp             EECS-SCEEEEECSSSSCEE------EEEET-TSCSSEEEE---------EECCCSC
T ss_pred             EeCC-CeEEEEECCCCccee------eEEec-cCCCCcEEE---------EecCCCC
Confidence            6655 99999999998  54      45543 444555666         7777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=6.7e-19  Score=153.25  Aligned_cols=282  Identities=10%  Similarity=0.063  Sum_probs=193.3

Q ss_pred             CCCeEEEEe------cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEEEcc
Q 016457           49 DWSLMAVSL------STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAWDTR  112 (389)
Q Consensus        49 ~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iwd~~  112 (389)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|++  +++++++          .+++|.+||+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg--~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG--KKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTS--SEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCC--CEEEEEEecccccccCCCCCEEEEEECc
Confidence            555666553      3679999999999988888776655  89999999  6888776          36789999999


Q ss_pred             CCeEEEEEEcC------CCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeee-eeecccCCeeEEEEecCCCCeE
Q 016457          113 SFHEVWSVTAG------SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       113 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      +++.+..+...      ......++++|++++++++..  ++.|.+||+.+++.+.. +.  ... ...+.+.|+++..+
T Consensus        90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~~-~~~v~~~p~~~~~~  166 (361)
T 2oiz_A           90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AAG-CWSVIPQPNRPRSF  166 (361)
T ss_dssp             TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GTT-EEEEEECTTSSSEE
T ss_pred             CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CCC-cceeEEcCCCCeeE
Confidence            99998888753      245678999999999999875  58999999999988877 54  222 23366788875588


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccc---eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce--eEEeecccc
Q 016457          184 VSASVDGLICTFDTGGDINDDDLL---ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN--VASFENARS  258 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~  258 (389)
                      ++.+.||.+.+|++..........   ..+.....+ ..+.+. +++..++..+.++.+.++|+.....  ...+.....
T Consensus       167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            899999999999986421100000   001111112 223334 4455667777889999999875532  222211000


Q ss_pred             -cccCCccCCCCCceeeecccCCCCeEEEEEe-c--------CCceEEEEEeccCCccccCCCeEEEecccceeeeeccC
Q 016457          259 -LASDSWTLDDVDYFVDCHYPGEGENLWVIGG-T--------GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLP  328 (389)
Q Consensus       259 -~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  328 (389)
                       .....|.   ......++|+|+++++|++.. .        ..+.|.+||+.+++.      +..+. .+.  +.++  
T Consensus       245 ~~~~~~~~---p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~------v~~i~-~~~--p~~i--  310 (361)
T 2oiz_A          245 EDKAKNWV---PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR------VARIP-GRD--ALSM--  310 (361)
T ss_dssp             HHHHTTCE---ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE------EEEEE-CTT--CCEE--
T ss_pred             cccccccc---cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE------EEEEe-cCC--eeEE--
Confidence             0000000   011223689999987665432 1        135899999999876      67776 444  8888  


Q ss_pred             CCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          329 MPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       329 ~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                             +|+|||++|++++. +.|.+||....
T Consensus       311 -------a~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          311 -------TIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             -------EEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             -------EECCCCCEEEEeCC-CeEEEEECCCC
Confidence                   99999999999886 99999998876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=3.1e-18  Score=147.37  Aligned_cols=246  Identities=13%  Similarity=0.124  Sum_probs=180.5

Q ss_pred             CcceEEEeecCCCCeEEEEecC------------------------CeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLST------------------------NVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPS   92 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~   92 (389)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. ++-.....+++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988887766                        479999998898876664 355678999999998


Q ss_pred             CCCEEEEEecCCeEEEEEccCCe-EEEEEE---------cCCCCeEEEEEeC-CCCeEEEee-cCCeEEEEECcCCceee
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFH-EVWSVT---------AGSQEIFCFSFGG-STDYLLAAG-CGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~  160 (389)
                        +++++...++.|++||..... .+..+.         .+-.....++++| ++..+++.+ .++.|++|| .+++.+.
T Consensus       103 --~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          103 --NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             --CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             --CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence              688888889999999986442 455552         2344689999998 454444444 489999999 5677766


Q ss_pred             eeee---------cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcE
Q 016457          161 CLEE---------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       161 ~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~  229 (389)
                      .+..         ++-.....|+++|++.+++++...++.|++||..++.    .+..+  ..+...+..+++.|  +..
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~~~~~~~~~~~~~~~~~~p--g~~  253 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVREIKHASFGRNVFAISYIP--GFL  253 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEECCTTTTTCEEEEEEET--TEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEEEEeccccCCCcceeeecC--CEE
Confidence            6641         1223488999999843588888889999999998442    23333  23456778888984  433


Q ss_pred             EEEEe-------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          230 LWCLT-------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       230 l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      +.+.+       .+..|++|+..+++.+..+....         .+......++++|+|.  ++++...++.|++|++..
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---------~~~~~p~~ia~~~dG~--lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---------KHFDMPHDIVASEDGT--VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---------SCCSSEEEEEECTTSE--EEEEESSSCCEEEEEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------CccCCeeEEEECCCCC--EEEEECCCCEEEEEeCCc
Confidence            33332       33489999999999888875211         1446788999999995  677888899999999875


Q ss_pred             C
Q 016457          303 G  303 (389)
Q Consensus       303 ~  303 (389)
                      .
T Consensus       323 ~  323 (329)
T 3fvz_A          323 K  323 (329)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=1.8e-17  Score=139.71  Aligned_cols=242  Identities=12%  Similarity=0.129  Sum_probs=174.9

Q ss_pred             CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc------CCCCeEEEEEeCCCCeEEEeec--CCeEE
Q 016457           78 GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA------GSQEIFCFSFGGSTDYLLAAGC--GSQIQ  149 (389)
Q Consensus        78 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~--d~~i~  149 (389)
                      ++-..+.++++.+++  .++++...++.|.+||.. ++.+..+..      +...+.++++.+.++.++++..  ++.|.
T Consensus        27 g~~~~p~~v~~~~~g--~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN--DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTC--CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCC--CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            455678999999988  688888889999999987 666666642      2356889999545566666653  79999


Q ss_pred             EEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCC
Q 016457          150 FWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETN  227 (389)
Q Consensus       150 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~  227 (389)
                      +|| .+++.+..+...+...+..++++|++. ++++...++.|.+||....     .+..+.  .+...+..++++ +++
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~p~~i~~~-~~g  175 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-----VLHKFGCSKHLEFPNGVVVN-DKQ  175 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-----EEEEEECTTTCSSEEEEEEC-SSS
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-----EEEEeCCCCccCCcEEEEEC-CCC
Confidence            999 567777666523446789999999995 8888778899999997632     222222  233467899999 677


Q ss_pred             cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc-eEEEEEeccCCcc
Q 016457          228 KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG-TVGYFPVNYGGAA  306 (389)
Q Consensus       228 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg-~i~i~~~~~~~~~  306 (389)
                      .++++...++.|++||. +++.+..+....          +...+..++++++|+  ++++...++ .|.+|+.. ++. 
T Consensus       176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g----------~~~~p~~i~~d~~G~--l~v~~~~~~~~i~~~~~~-g~~-  240 (286)
T 1q7f_A          176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEG----------ITNYPIGVGINSNGE--ILIADNHNNFNLTIFTQD-GQL-  240 (286)
T ss_dssp             EEEEEEGGGTEEEEEET-TCCEEEEESCTT----------TSCSEEEEEECTTCC--EEEEECSSSCEEEEECTT-SCE-
T ss_pred             CEEEEECCCCEEEEEcC-CCCEEEEEccCC----------ccCCCcEEEECCCCC--EEEEeCCCCEEEEEECCC-CCE-
Confidence            77777777899999997 455666654321          235678999999987  667776665 99999964 332 


Q ss_pred             ccCCCeEEEecccc--eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          307 TIGPPEAVLVGGHT--AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       307 ~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                           +..+. .+.  ..+.++         +++|+|+++++ +.|+.|++|++...
T Consensus       241 -----~~~~~-~~~~~~~~~~i---------~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          241 -----ISALE-SKVKHAQCFDV---------ALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -----EEEEE-ESSCCSCEEEE---------EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -----EEEEc-ccCCCCcceeE---------EECCCCcEEEE-CCCCeEEEEEcccc
Confidence                 34443 232  235566         89999998777 56999999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.84  E-value=1.9e-16  Score=144.69  Aligned_cols=317  Identities=10%  Similarity=-0.040  Sum_probs=212.4

Q ss_pred             cCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCC--CceeeeeecCCCCcEEEEEEe---
Q 016457           17 CDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPV--TGQYSGECKGHSSTVNQISFS---   89 (389)
Q Consensus        17 ~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~~---   89 (389)
                      ...++.|.++|..  +.+.++.....+..+.|+|||+++++++.++.|.+||+.  +++.+..+.... ....++|+   
T Consensus       173 ~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~  251 (567)
T 1qks_A          173 LRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKME  251 (567)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCST
T ss_pred             eCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcccc
Confidence            4456899999986  355556556677899999999999999999999999995  788887777533 46789999   


Q ss_pred             -CCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcC-----------CCCeEEEEEeCCCCeEEEeec-CCeEEEEECcC
Q 016457           90 -GPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAG-----------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRN  155 (389)
Q Consensus        90 -~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~  155 (389)
                       |++  +++++++ .+++|.++|..+.+.+..+...           ...+..+..++.+..+++.-. .|.|.++|...
T Consensus       252 ~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~  329 (567)
T 1qks_A          252 GWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD  329 (567)
T ss_dssp             TCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred             CCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence             688  5666554 5699999999999998887642           126778888887776666554 79999999886


Q ss_pred             CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCC-CcEEE
Q 016457          156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGET-NKHLW  231 (389)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~-~~~l~  231 (389)
                      .+.+.............+.|+|+++.++++...++.|.++|+.+++    ....+..   ...+-....|..++ +..++
T Consensus       330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~  405 (567)
T 1qks_A          330 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----LVAIEDTGGQTPHPGRGANFVHPTFGPVWA  405 (567)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred             CccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----EEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence            5433221112445677899999997444555568899999999653    2222221   11111233343255 44444


Q ss_pred             EEe-cCCcEEEEEcCC-------CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cC----CceEEEE
Q 016457          232 CLT-HIETLSIWDWKD-------GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TG----AGTVGYF  298 (389)
Q Consensus       232 ~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~----dg~i~i~  298 (389)
                      ++. .++.|.++|..+       .+.++++...            ...-..+..+|+++.+|+... .-    ...|.+|
T Consensus       406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~------------g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~  473 (567)
T 1qks_A          406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL------------GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF  473 (567)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS------------CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred             eCCCCCCeEEEecCCCCCCccccCEEEEEEecC------------CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence            443 468999999987       5667776642            123355778999995554331 11    4689999


Q ss_pred             EeccCCccccCCCeEEEec-------ccceeeeeccCCCcccCCCCCCCceeEEEec-----CCCeEEEEeccCC
Q 016457          299 PVNYGGAATIGPPEAVLVG-------GHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-----EDGRLCCWLSDDS  361 (389)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~v~iW~~~~~  361 (389)
                      |+.+.+..........+..       .....+..+         .|+++|+++..+.     .++.|.++|..+.
T Consensus       474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG---------EFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE---------EECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             ECCcccccccCCCcEEeccccccccCCCCcceEee---------eECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence            9987611000011122221       012356666         8999999877652     3799999998776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=5.9e-18  Score=145.66  Aligned_cols=247  Identities=13%  Similarity=0.070  Sum_probs=179.4

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecC------------------------CeEEEEEccCCeEEEEEEc-CCCCeEEEEEeC
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSD------------------------GTIRAWDTRSFHEVWSVTA-GSQEIFCFSFGG  134 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~  134 (389)
                      -+.+.+|+++|++  +++++...+                        ++|.+||..+++.+..+.. +-.....++++|
T Consensus        23 l~~v~~va~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKN--NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTC--CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCC--CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            4679999999998  688877766                        4799999998988766652 345789999998


Q ss_pred             CCCeEEEeecCCeEEEEECcCCc-eeeeee--------ecccCCeeEEEEec-CCCCeEEEEe-CCCcEEEEecCCCCCC
Q 016457          135 STDYLLAAGCGSQIQFWDWRNKK-QVACLE--------ESHVEDVTQVHFVP-NNQNKVVSAS-VDGLICTFDTGGDIND  203 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~-~~~~~l~~~~-~d~~i~i~d~~~~~~~  203 (389)
                      ++..+++...++.|++||..... .+..+.        ..+......|+++| ++ +++++.+ .++.|++||....   
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g~---  176 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSGK---  176 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTSC---
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCCC---
Confidence            88866665668999999976442 444442        13344688999999 66 4777776 6899999996522   


Q ss_pred             Cccceeeecc----------CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          204 DDLLESVINV----------GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       204 ~~~~~~~~~~----------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                        .+..+...          -.....+++++..+.++++...++.|++|+..+++.+..+....          +...+.
T Consensus       177 --~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~----------~~~~~~  244 (329)
T 3fvz_A          177 --FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS----------FGRNVF  244 (329)
T ss_dssp             --EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT----------TTTCEE
T ss_pred             --EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc----------cCCCcc
Confidence              22222211          12378999994447888888889999999999898888875432          446678


Q ss_pred             eecccC------CCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEE
Q 016457          274 DCHYPG------EGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGW  345 (389)
Q Consensus       274 ~~~~~~------~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~  345 (389)
                      .++++|      +++  ..++...+..|++|+..+++.      +..+.  .++......+         +++|+|.+++
T Consensus       245 ~~~~~pg~~~~~~g~--~~v~~~~~~~v~~~~~~~g~~------~~~~~~~~~~~~~p~~i---------a~~~dG~lyv  307 (329)
T 3fvz_A          245 AISYIPGFLFAVNGK--PYFGDQEPVQGFVMNFSSGEI------IDVFKPVRKHFDMPHDI---------VASEDGTVYI  307 (329)
T ss_dssp             EEEEETTEEEEEECC--CCTTCSCCCCEEEEETTTCCE------EEEECCSSSCCSSEEEE---------EECTTSEEEE
T ss_pred             eeeecCCEEEEeCCC--EEeccCCCcEEEEEEcCCCeE------EEEEcCCCCccCCeeEE---------EECCCCCEEE
Confidence            888988      222  222233455899999988776      44442  2455567777         9999999999


Q ss_pred             EecCCCeEEEEeccCC
Q 016457          346 TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       346 s~~~dg~v~iW~~~~~  361 (389)
                      +...++.|++|+++..
T Consensus       308 ad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          308 GDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EESSSCCEEEEEEEEC
T ss_pred             EECCCCEEEEEeCCcc
Confidence            9999999999998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=3.9e-17  Score=137.73  Aligned_cols=240  Identities=12%  Similarity=0.097  Sum_probs=174.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec------CCCCcEEEEEEe-CCCCCCEEEEEec-CCeEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK------GHSSTVNQISFS-GPSTPHVLHSCSS-DGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~------~~~~~v~~i~~~-~~~~~~~l~s~~~-dg~i~iw  109 (389)
                      -..+.+++++++++++++...++.|.+||.. ++.+..+.      ++...+..+++. +++  .++++... ++.|.+|
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIY  105 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEE
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEEE
Confidence            3568899999999888887889999999987 66655553      244578999995 566  45555433 8899999


Q ss_pred             EccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-cccCCeeEEEEecCCCCeEEEEe
Q 016457          110 DTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       110 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      | .+++.+..+... ...+.+++++|++..+++...++.|.+||.. ++.+..+.. .+...+..|+++|++. ++++..
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~  182 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN  182 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEEC
Confidence            9 567777766532 4578999999888755555568999999964 555555531 2345689999999985 778778


Q ss_pred             CCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEEEEEecCC-cEEEEEcCCCceeEEeecccccccCCc
Q 016457          188 VDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      .++.|++||....     .+..+...  ...+..++++ +++.++++...++ .|.+||. +++.+..+....       
T Consensus       183 ~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-------  248 (286)
T 1q7f_A          183 RAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-------  248 (286)
T ss_dssp             GGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------
T ss_pred             CCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEEC-CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------
Confidence            8999999998632     22333222  2567899998 6777777777776 9999995 566666665422       


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                         ....+.+++++|+|+  ++++ +.++.|++|++...
T Consensus       249 ---~~~~~~~i~~~~~g~--l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 ---KHAQCFDVALMDDGS--VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ---CCSCEEEEEEETTTE--EEEE-ETTTEEEEEECSCC
T ss_pred             ---CCCcceeEEECCCCc--EEEE-CCCCeEEEEEcccc
Confidence               223467899999986  5556 46899999998653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=3.2e-18  Score=150.95  Aligned_cols=267  Identities=9%  Similarity=-0.024  Sum_probs=179.0

Q ss_pred             EEEeCCCceeeeeecCCCCcEEE-----EEEeCCCCCCEEEEEec-CC--eEEEEEccCCeEEEEEEcCCCCeEEEEEeC
Q 016457           63 KLYSPVTGQYSGECKGHSSTVNQ-----ISFSGPSTPHVLHSCSS-DG--TIRAWDTRSFHEVWSVTAGSQEIFCFSFGG  134 (389)
Q Consensus        63 ~iw~~~~~~~~~~~~~~~~~v~~-----i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  134 (389)
                      ..++..++..+..+..|......     .+|+|++  +.|+.++. ++  .|.+||+.+++.......+...+..+.|+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDG--SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTS--CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCC--CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence            34577778888888777766665     8899999  68888776 66  488889998888776666655555778999


Q ss_pred             CCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE--EecCCCCeEEEE----------------------eCCC
Q 016457          135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH--FVPNNQNKVVSA----------------------SVDG  190 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~d~  190 (389)
                      +++.|+.++.++.|++||+.+++....+. .+...+....  ++|++. .++..                      ..+.
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcc
Confidence            99999999999999999999988766555 4444444343  488885 66532                      2346


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecC-CCcEEEEEecC------CcEEEEEcCCCceeEEeecccccccCC
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE-TNKHLWCLTHI------ETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      .|.+||+.++.     ...+..+...+..++|+ | +++.|+....+      ..|.++|...+.. ..+....      
T Consensus       169 ~l~~~d~~~g~-----~~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~------  235 (388)
T 3pe7_A          169 RLMRVDLKTGE-----STVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA------  235 (388)
T ss_dssp             EEEEEETTTCC-----EEEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC------
T ss_pred             eEEEEECCCCc-----eEEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC------
Confidence            79999998653     44455566778999999 5 77777776653      3788888765543 3333211      


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCC---ceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCC
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGA---GTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSH  340 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~  340 (389)
                          ....+....|+|+|+.+++++...+   +.|++||+.+++..    .+..+. ++..    ........  +|+||
T Consensus       236 ----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~-~~~~----~~~~~~~~--~~spd  300 (388)
T 3pe7_A          236 ----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----QLTSMP-ACSH----LMSNYDGS--LMVGD  300 (388)
T ss_dssp             ----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----EEEEEC-CEEE----EEECTTSS--EEEEE
T ss_pred             ----CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----EEEcCC-Ccee----eeecCCCC--eEccC
Confidence                1135778899999995433333222   24999999987741    112221 2111    10111112  68999


Q ss_pred             ceeEEEe---------cCCCeEEEEeccCC
Q 016457          341 GIFGWTG---------GEDGRLCCWLSDDS  361 (389)
Q Consensus       341 ~~~l~s~---------~~dg~v~iW~~~~~  361 (389)
                      |+.|+..         ..+..|++|+++..
T Consensus       301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             ECCC------------CCCCEEEEEETTTT
T ss_pred             CCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            9988854         45678999999865

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=8.2e-18  Score=158.92  Aligned_cols=299  Identities=7%  Similarity=-0.021  Sum_probs=191.5

Q ss_pred             CCCCeEEEEec--Cceeeeeec-CcceE---------EEeec--CCCCe-EEEEec-CCeEEEEeCC--C-ceeeeeecC
Q 016457           18 DNVNSIKRFGL--KNSIQTNFG-DDYVF---------EIVPK--NDWSL-MAVSLS-TNVVKLYSPV--T-GQYSGECKG   78 (389)
Q Consensus        18 ~~~~~i~~w~~--~~~~~~~~~-~~~v~---------~~~~~--~~~~~-l~~~~~-d~~i~iw~~~--~-~~~~~~~~~   78 (389)
                      +.++...+|..  +.....+.. ...+.         ...|+  |||+. |+.+.. +..|.++++.  . ++ ...+..
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~  122 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTP  122 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSC
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccC
Confidence            34667778874  233444443 44444         45555  99998 776654 5667777765  2 43 444444


Q ss_pred             -----CCCcEEEEEEeCCCCCCEEEEEecC----------CeEEEEEccC------CeEEEEEE-cCCCCeEEEEEeCCC
Q 016457           79 -----HSSTVNQISFSGPSTPHVLHSCSSD----------GTIRAWDTRS------FHEVWSVT-AGSQEIFCFSFGGST  136 (389)
Q Consensus        79 -----~~~~v~~i~~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~  136 (389)
                           |...+..++|+|++  +.|++++.+          ..|.+||+.+      ++.. .+. .+...+..++|+|++
T Consensus       123 ~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG  199 (662)
T 3azo_A          123 VSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDG  199 (662)
T ss_dssp             CCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTS
T ss_pred             CccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCC
Confidence                 66789999999999  788888876          5899999987      5543 344 445678889999999


Q ss_pred             CeEEEeecC--------CeEEEEECc-CC--ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC--cEEEEecCCCCCC
Q 016457          137 DYLLAAGCG--------SQIQFWDWR-NK--KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG--LICTFDTGGDIND  203 (389)
Q Consensus       137 ~~l~~~~~d--------~~i~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~  203 (389)
                      +.|+.++.+        ..|++||+. ++  .....+...+...+..+.|+|+|+ +++++..++  .|.+||+.++.  
T Consensus       200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~--  276 (662)
T 3azo_A          200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA--  276 (662)
T ss_dssp             SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC--
T ss_pred             CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc--
Confidence            999888754        379999998 56  234444425578899999999997 888888888  56666664332  


Q ss_pred             CccceeeeccCCc---------eeeEEEecCCCcEEEEEecCCcEEEE--EcCCCceeEEeecccccccCCccCCCCCce
Q 016457          204 DDLLESVINVGTS---------VGKVGFFGETNKHLWCLTHIETLSIW--DWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       204 ~~~~~~~~~~~~~---------i~~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                         ...+..+...         +..++|+ +++.++++++. +.++||  |+.+++ +..+..            +...+
T Consensus       277 ---~~~l~~~~~~~~~p~w~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~------------~~~~~  338 (662)
T 3azo_A          277 ---ATQLCRREEEFAGPLWTPGMRWFAPL-ANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG------------PWTEW  338 (662)
T ss_dssp             ---EEESSCCSSBSSCCCCSTTCCSEEEC-TTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS------------SCCEE
T ss_pred             ---eeecccccccccCccccccCceEeEe-CCCEEEEEEEc-CccEEEEEECCCCc-EEEecC------------CCCeE
Confidence               1222222111         4578888 67888888888 988898  555454 555544            33555


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEE--EeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYF--PVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      ..+ ++++++.+++++++.+....+|  |+.+++.       ..+...|...+...         .+++...+.+.+..+
T Consensus       339 ~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------~~l~~~~~~~~~~~---------~~~~~~~~~~~~~dg  401 (662)
T 3azo_A          339 AAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA-------RTIGARHTDPVDPA---------YYPEPQIRTFTAPDG  401 (662)
T ss_dssp             EEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCE-------EEEESCCCCSSCGG---------GSCCCEEEEEECTTS
T ss_pred             EEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCce-------EEeecCCcccCCcc---------ccCcceEEEEEcCCC
Confidence            555 1556676667777777554454  5556553       44443443333333         444444444554444


Q ss_pred             CeEEEEec
Q 016457          351 GRLCCWLS  358 (389)
Q Consensus       351 g~v~iW~~  358 (389)
                      ..|..|-.
T Consensus       402 ~~i~~~~~  409 (662)
T 3azo_A          402 REIHAHIY  409 (662)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            45655543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.6e-18  Score=160.86  Aligned_cols=306  Identities=9%  Similarity=-0.003  Sum_probs=188.7

Q ss_pred             CCeEEEEecC--ceeeeeec-Cc-----ceEEEeecCCCCeEEEEecC---------CeEEEEeCCCceeeeeecCCCCc
Q 016457           20 VNSIKRFGLK--NSIQTNFG-DD-----YVFEIVPKNDWSLMAVSLST---------NVVKLYSPVTGQYSGECKGHSST   82 (389)
Q Consensus        20 ~~~i~~w~~~--~~~~~~~~-~~-----~v~~~~~~~~~~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~   82 (389)
                      +++|++|++.  +....+.+ ..     ....++|||||++|+.++.+         +.+.+||+.+++.. .+..|...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~  113 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN  113 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence            8899999985  34444444 21     22457899999999999875         56779999998765 45667788


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEE-EcCCCCe-----------------EEEEEeCCCCeEEEeec
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSV-TAGSQEI-----------------FCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~  144 (389)
                      +...+|+|+|  +.|+.+ .|+.|.+|++.+++..+.. .++...+                 ..+.|+|+++.|+.+..
T Consensus       114 ~~~~~~SPdG--~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          114 TQWVTWSPVG--HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             EEEEEECSST--TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ceeeEECCCC--CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence            9999999999  688887 4789999999887754321 1222222                 34899999999888753


Q ss_pred             C-C-----------------------------------eEEEEECcC---Cc--eeeeeee-----cccCCeeEEEEecC
Q 016457          145 G-S-----------------------------------QIQFWDWRN---KK--QVACLEE-----SHVEDVTQVHFVPN  178 (389)
Q Consensus       145 d-~-----------------------------------~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~  178 (389)
                      | +                                   .|++||+.+   ++  ....+..     +|...+..++|+|+
T Consensus       191 d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd  270 (740)
T 4a5s_A          191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ  270 (740)
T ss_dssp             ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred             cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC
Confidence            2 1                                   588899988   63  2233331     26677999999999


Q ss_pred             CCCeEEEEeC----CCcEEEEecCCCCCC--Cccceee--eccCCcee-----eEEEecCCCcEEE-EEec-CC--cEEE
Q 016457          179 NQNKVVSASV----DGLICTFDTGGDIND--DDLLESV--INVGTSVG-----KVGFFGETNKHLW-CLTH-IE--TLSI  241 (389)
Q Consensus       179 ~~~~l~~~~~----d~~i~i~d~~~~~~~--~~~~~~~--~~~~~~i~-----~~~~~~~~~~~l~-~~~~-d~--~i~i  241 (389)
                      ++ .++....    +..|.+||+.++...  ......+  ..+...+.     ...|+ ++++.++ ..+. +|  .|++
T Consensus       271 g~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs-pDG~~l~~~~s~~~G~~~l~~  348 (740)
T 4a5s_A          271 ER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT-LDGNSFYKIISNEEGYRHICY  348 (740)
T ss_dssp             TE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC-TTSSEEEEEEECTTSCEEEEE
T ss_pred             Ce-EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc-CCCCEEEEEEEcCCCceEEEE
Confidence            96 6665533    236999999876310  0011111  33444444     78899 6777655 5543 43  7888


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC----CceEEEEEe--ccCCccccCCCeEEE
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG----AGTVGYFPV--NYGGAATIGPPEAVL  315 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~----dg~i~i~~~--~~~~~~~~~~~~~~~  315 (389)
                      ||+.+++.. .+..            ....+..+. .++++.++ ++++.    .+...||.+  ..+..      ...+
T Consensus       349 ~~~~~~~~~-~lT~------------g~~~v~~~~-~~d~~~i~-f~~~~~~~~~~~~~ly~v~~~g~~~------~~~l  407 (740)
T 4a5s_A          349 FQIDKKDCT-FITK------------GTWEVIGIE-ALTSDYLY-YISNEYKGMPGGRNLYKIQLIDYTK------VTCL  407 (740)
T ss_dssp             EETTCSSCE-ESCC------------SSSCEEEEE-EECSSEEE-EEESCGGGCTTCBEEEEEETTEEEE------EEES
T ss_pred             EECCCCceE-eccc------------CCEEEEEEE-EEeCCEEE-EEEecCCCCCceeEEEEEECCCCCc------ceee
Confidence            898766544 3332            113344332 24466443 34433    234455544  33221      0011


Q ss_pred             e---cccceeeeeccCCCcccCCCCCCCceeEEEecCC---CeEEEEeccCC
Q 016457          316 V---GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED---GRLCCWLSDDS  361 (389)
Q Consensus       316 ~---~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~v~iW~~~~~  361 (389)
                      .   .+....+..+         .|||++++++.....   ..+.+++....
T Consensus       408 t~~~~~~~~~~~~~---------~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          408 SCELNPERCQYYSV---------SFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             STTTSTTTBCBEEE---------EECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             ccccCCCCCceEEE---------EECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence            1   0112344555         899999876544322   35777776644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.9e-17  Score=142.91  Aligned_cols=285  Identities=9%  Similarity=-0.018  Sum_probs=190.0

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|++++  ++++++..++.|.+||..+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g--~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG--QLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC--CEEEEECCCCEEEEEeCCCCcEEE
Confidence            457788999998877777778889999   356666777777788999999988  677788889999999998887665


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecC----CeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeC-----
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCG----SQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASV-----  188 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-----  188 (389)
                      ....+...+.+++++|++..+++...+    +.|.+||..++.....+. ..+...+..++++|++. ++++...     
T Consensus        81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~  159 (333)
T 2dg1_A           81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTN  159 (333)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTB
T ss_pred             EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccC
Confidence            554556789999999887655555555    689999988776543332 12345789999999985 6666543     


Q ss_pred             -CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCCcEEEEEcCC-CceeEEeecccccccCCcc
Q 016457          189 -DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIETLSIWDWKD-GQNVASFENARSLASDSWT  265 (389)
Q Consensus       189 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  265 (389)
                       .+.|..+|..++.     ...+......+..++|+ ++++.| ++.+.++.|.+||+.+ +..+..+.......     
T Consensus       160 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-----  228 (333)
T 2dg1_A          160 PLGGVYYVSPDFRT-----VTPIIQNISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-----  228 (333)
T ss_dssp             CCEEEEEECTTSCC-----EEEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-----
T ss_pred             CCceEEEEeCCCCE-----EEEeecCCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe-----
Confidence             3556666665321     22222333457889999 666655 4555678999999964 43333221100000     


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce------eeeeccCCCcccCCCCCC
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA------VVRSVLPMPSVQGRPAQS  339 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~s~  339 (389)
                      ......+..++++++|+  +.++...++.|.+|+.. ++.      +..+. .+..      .+.++         +|++
T Consensus       229 ~~~~~~~~~i~~d~~G~--l~v~~~~~~~v~~~d~~-g~~------~~~~~-~~~~~~g~~~~~~~~---------~~~~  289 (333)
T 2dg1_A          229 FTGHEGPDSCCIDSDDN--LYVAMYGQGRVLVFNKR-GYP------IGQIL-IPGRDEGHMLRSTHP---------QFIP  289 (333)
T ss_dssp             CCSSSEEEEEEEBTTCC--EEEEEETTTEEEEECTT-SCE------EEEEE-CTTGGGTCSCBCCEE---------EECT
T ss_pred             cCCCCCCCceEECCCCC--EEEEEcCCCEEEEECCC-CCE------EEEEE-cCCCccccccCcceE---------EECC
Confidence            00113567899999987  55666677899999984 332      34443 2221      56677         8899


Q ss_pred             CceeEEEecCCC----eEEEEecc
Q 016457          340 HGIFGWTGGEDG----RLCCWLSD  359 (389)
Q Consensus       340 ~~~~l~s~~~dg----~v~iW~~~  359 (389)
                      |+..|+.++.++    .-.||.++
T Consensus       290 dg~~L~v~~~~g~~~~~~~l~~~~  313 (333)
T 2dg1_A          290 GTNQLIICSNDIEMGGGSMLYTVN  313 (333)
T ss_dssp             TSCEEEEEEECGGGTCCEEEEEEE
T ss_pred             CCCEEEEEeCccCCCCCceEEEEe
Confidence            987666555443    24455544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1.1e-18  Score=164.82  Aligned_cols=291  Identities=9%  Similarity=-0.048  Sum_probs=188.0

Q ss_pred             CcceEEEeecCCCCeEEEE--ecCCeEEEEeCCCceeeeeecCCCCcEE---------EEEEe--CCCCCCE-EEEEec-
Q 016457           38 DDYVFEIVPKNDWSLMAVS--LSTNVVKLYSPVTGQYSGECKGHSSTVN---------QISFS--GPSTPHV-LHSCSS-  102 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~~~-l~s~~~-  102 (389)
                      ...+..++|++++-+++..  ..++...||....+.....+..|...+.         ...|+  |++  +. |+.++. 
T Consensus        23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg--~~~la~~~~~  100 (662)
T 3azo_A           23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG--GPLLVFTHFG  100 (662)
T ss_dssp             CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS--SCEEEEEBTT
T ss_pred             CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCC--CeEEEEEECC
Confidence            6778999999887666666  4478899998654544556666666666         66676  888  56 555443 


Q ss_pred             CCeEEEEEcc--C-CeEEEEEEc-----CCCCeEEEEEeCCCCeEEEeecC----------CeEEEEECcC------Cce
Q 016457          103 DGTIRAWDTR--S-FHEVWSVTA-----GSQEIFCFSFGGSTDYLLAAGCG----------SQIQFWDWRN------KKQ  158 (389)
Q Consensus       103 dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~------~~~  158 (389)
                      +..|.++++.  . ++ ...+..     +...+.+++|+|+++.|++++.+          ..|++||+.+      ++.
T Consensus       101 ~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  179 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV  179 (662)
T ss_dssp             TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred             CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence            5567777765  2 33 344444     45678899999999999988876          5899999987      554


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCC--------CcEEEEecC-CCCCCCccceeee-ccCCceeeEEEecCCCc
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVD--------GLICTFDTG-GDINDDDLLESVI-NVGTSVGKVGFFGETNK  228 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~  228 (389)
                      ..... .+...+..++|+|+|+ .|+.++.+        ..|++||+. ++.  ......+. .+...+..+.|+ ++++
T Consensus       180 ~~l~~-~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~--~~~~~~l~~~~~~~~~~~~~s-pdg~  254 (662)
T 3azo_A          180 RELSD-DAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGR--FADTRTLLGGPEEAIAQAEWA-PDGS  254 (662)
T ss_dssp             EESSC-SCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSC--EEEEEEEEEETTBCEEEEEEC-TTSC
T ss_pred             eEEEe-cCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCc--ccccEEeCCCCCceEcceEEC-CCCe
Confidence            33331 2446788899999996 88777654        379999998 331  01233333 346788999999 6777


Q ss_pred             EEEEEecCC--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec--cCC
Q 016457          229 HLWCLTHIE--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN--YGG  304 (389)
Q Consensus       229 ~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~--~~~  304 (389)
                      +++++..++  .|.+||+.+++...............|.    -.+..++|++++.  ++++++. +.++||.+.  +++
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~----~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT----PGMRWFAPLANGL--IAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS----TTCCSEEECTTSC--EEEEEBS-SSCEEEEEETTTTE
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCcccc----ccCceEeEeCCCE--EEEEEEc-CccEEEEEECCCCc
Confidence            888888888  6666776666544333322111111121    1145688888888  7788888 999999554  333


Q ss_pred             ccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       305 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      .       ..+. .|...+..++        +++.+.-++++++.+....+|.++
T Consensus       328 ~-------~~l~-~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          328 L-------VDAA-GPWTEWAATL--------TVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             E-------EECC-SSCCEEEEEE--------EEETTEEEEEEEETTEEEEEEEEE
T ss_pred             E-------EEec-CCCCeEEEEE--------ecCCCEEEEEEcCCCCCCEEEEEE
Confidence            2       4443 5655565551        223333455566667665666544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=3.1e-17  Score=142.35  Aligned_cols=258  Identities=12%  Similarity=0.053  Sum_probs=175.2

Q ss_pred             cceEEEeecCCCCeEEEEe---------cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---C--
Q 016457           39 DYVFEIVPKNDWSLMAVSL---------STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---G--  104 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g--  104 (389)
                      ..+...++  ||+.++...         .++.|.+||+.+++... +    ..+..++|+|++  +.|+.++.+   +  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg--~~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDG--KKIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTS--SEEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCC--CEEEEEEeccCCCcc
Confidence            44666777  888877653         25679999998876533 3    567889999999  688877654   3  


Q ss_pred             eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC---------------------------CeEEEEECcCCc
Q 016457          105 TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG---------------------------SQIQFWDWRNKK  157 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~i~iwd~~~~~  157 (389)
                      .|.+|++.+++.......+ . +..++|+|+++.|+.++.+                           ..|.+||+.+++
T Consensus        86 ~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           86 EIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             eEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            3778888888776655544 3 9999999999998888642                           579999998887


Q ss_pred             eeeeeeecccCCeeEEEEecCCCCeEEEEeCCC-------cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDG-------LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      .+..+. . . .+..+.|+|++  +++++..++       ...+|.+.++     ....+..+ ..+..+  + ++++.|
T Consensus       164 ~~~~l~-~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-----~~~~l~~~-~~~~~~--s-pdg~~l  229 (347)
T 2gop_A          164 VIEEFE-K-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-----KEEKMFEK-VSFYAV--D-SDGERI  229 (347)
T ss_dssp             EEEEEE-E-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-----EEEEEEEE-ESEEEE--E-ECSSCE
T ss_pred             EEeeec-C-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-----ceEEeccC-cceeeE--C-CCCCEE
Confidence            756666 3 3 78999999998  666665442       3344443322     12333333 334433  6 677777


Q ss_pred             EEEecC--------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceee-ecccCCCCeEEEEEecCCceEEEEEec
Q 016457          231 WCLTHI--------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD-CHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       231 ~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +.++.+        ..|.+||  +++.......            +...+.. +.|+ ++   ++++++.++.+++| +.
T Consensus       230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------------~~~~~~~~~~~s-dg---~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE------------VDRGVGQAKIKD-GK---VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEEECCSSSCCCSSCEEEEEC--SSCEEESSTT------------CCSEEEEEEEET-TE---EEEEEEETTEEEEE-EE
T ss_pred             EEEEccccCCccccceEEEEC--CCceEecccc------------CCcccCCccEEc-Cc---EEEEEecCCcEEEE-Ec
Confidence            766644        3677887  4543322222            3466775 8898 65   56788889999999 88


Q ss_pred             cCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE-EEEecc
Q 016457          302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL-CCWLSD  359 (389)
Q Consensus       302 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v-~iW~~~  359 (389)
                      +++.       ..+. .+...|.++         +|++  .++++++.++.. .+|.++
T Consensus       291 ~g~~-------~~~~-~~~~~v~~~---------~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          291 DGEI-------KPIA-KGRHWIMGF---------DVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             SSSE-------EEEE-CSSSEEEEE---------EESS--SEEEEEECSSSCCEEEEES
T ss_pred             CCce-------EEEe-cCCCeEEee---------eeeC--cEEEEEcCCCChHHheEeC
Confidence            5443       4444 456778888         8888  566776666665 888876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=2.4e-16  Score=135.93  Aligned_cols=258  Identities=6%  Similarity=-0.044  Sum_probs=173.4

Q ss_pred             ccCCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           16 SCDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        16 s~~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ..+.++.++.| .......+.. ...+.+++|++++++++++..++.|.+||.++++.......+...+.++++++++  
T Consensus        22 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg--   98 (333)
T 2dg1_A           22 PIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG--   98 (333)
T ss_dssp             CCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS--
T ss_pred             EEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC--
Confidence            34667888888 4555555555 5677899999999977788888999999998887655444566789999999998  


Q ss_pred             CEEEEEecC----CeEEEEEccCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeee
Q 016457           95 HVLHSCSSD----GTIRAWDTRSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        95 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  162 (389)
                      +++++...+    +.|.+||..++.....+.  .+...+.+++++|++..+++...      .+.|..+|..+++... +
T Consensus        99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~  177 (333)
T 2dg1_A           99 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-I  177 (333)
T ss_dssp             CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-E
T ss_pred             cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-e
Confidence            677776666    689999998776553333  23457899999988765555442      2567777765544433 3


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce-e-eec--cCCceeeEEEecCCCcEEEEEecCCc
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE-S-VIN--VGTSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~~--~~~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      . .....+..++|+|++..++++.+.++.|.+||+.+......... . ...  ....+..+++. +++.++++...++.
T Consensus       178 ~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~  255 (333)
T 2dg1_A          178 I-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGR  255 (333)
T ss_dssp             E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTE
T ss_pred             e-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC-CCCCEEEEEcCCCE
Confidence            2 23445789999999852445555678999999963211111000 0 111  11367789998 67777777777889


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      |.+||. +++.+..+......      .+|...+.+++|+|+++.+|+
T Consensus       256 v~~~d~-~g~~~~~~~~~~~~------~g~~~~~~~~~~~~dg~~L~v  296 (333)
T 2dg1_A          256 VLVFNK-RGYPIGQILIPGRD------EGHMLRSTHPQFIPGTNQLII  296 (333)
T ss_dssp             EEEECT-TSCEEEEEECTTGG------GTCSCBCCEEEECTTSCEEEE
T ss_pred             EEEECC-CCCEEEEEEcCCCc------cccccCcceEEECCCCCEEEE
Confidence            999998 46666666532100      001226788999999875443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=3.4e-16  Score=143.04  Aligned_cols=287  Identities=13%  Similarity=0.067  Sum_probs=202.8

Q ss_pred             CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc--CCeEEEEEEcCCC
Q 016457           48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR--SFHEVWSVTAGSQ  125 (389)
Q Consensus        48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~  125 (389)
                      |.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|++  +++++++.|+.|.+||+.  +++.+..+... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-S  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECC-S
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEecC-C
Confidence            4455666667789999999999999988874 3457799999999  799999999999999996  88888888864 4


Q ss_pred             CeEEEEEe----CCCCeEEEeec-CCeEEEEECcCCceeeeeeec---------ccC-CeeEEEEecCCCCeEEEEeCCC
Q 016457          126 EIFCFSFG----GSTDYLLAAGC-GSQIQFWDWRNKKQVACLEES---------HVE-DVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       126 ~v~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~---------~~~-~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ....++|+    |++++++++.. ++.|.++|..+.+.+..+...         |.. .+..+..+++++.+++....+|
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            57899999    69999998887 799999999999988776511         112 5788999998775666677789


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCceeEEeec-ccccccCCccCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQNVASFEN-ARSLASDSWTLDD  268 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~  268 (389)
                      .|.++|.....   ...............+.|+ +++++++++. .++.|.++|+.+++.+..+.. ...        .|
T Consensus       321 ~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~--------Ph  388 (567)
T 1qks_A          321 KILLVDYTDLN---NLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT--------PH  388 (567)
T ss_dssp             EEEEEETTCSS---EEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS--------BC
T ss_pred             eEEEEecCCCc---cceeeeeeccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC--------CC
Confidence            99999998432   1112222344566788899 6777766555 578999999999988777654 221        13


Q ss_pred             CCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc-cccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          269 VDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA-ATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       269 ~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ...-..+ ++|++..+|+.+...++.|.++|..+.+. ...++.+..+. ...         .+.+.+.++|++++|+..
T Consensus       389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~-~~g---------~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALG---------GGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSC---------SCCCCEECCTTCSEEEEE
T ss_pred             Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe-cCC---------CCCEEEEeCCCCCeEEEe
Confidence            3222222 57876654433334568999999987432 00112234433 111         122223779999998886


Q ss_pred             cC-------CCeEEEEeccCC
Q 016457          348 GE-------DGRLCCWLSDDS  361 (389)
Q Consensus       348 ~~-------dg~v~iW~~~~~  361 (389)
                      ..       ...|.++|+++.
T Consensus       458 ~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          458 ATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTCSSHHHHTCEEEEEGGGC
T ss_pred             cCCCCCcccCceEEEEECCcc
Confidence            52       459999999866

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=2.3e-16  Score=149.96  Aligned_cols=244  Identities=9%  Similarity=0.030  Sum_probs=174.6

Q ss_pred             ceEEEeecCCCCeEEEEecCC-----eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe---------
Q 016457           40 YVFEIVPKNDWSLMAVSLSTN-----VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT---------  105 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~---------  105 (389)
                      .+..++|||||++||.+..++     .|++||+.+++.......+ ..+..++|+|++  +.|+.++.++.         
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg--~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDG--KGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTS--SEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCC--CEEEEEEECCcccccccccc
Confidence            588999999999999887644     8999999999876543322 236789999999  68888887765         


Q ss_pred             -------EEEEEccCCeE--EEEEEc--CCCCeEEEEEeCCCCeEEEeec-----CCeEEEEECcC------Cc-eeeee
Q 016457          106 -------IRAWDTRSFHE--VWSVTA--GSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRN------KK-QVACL  162 (389)
Q Consensus       106 -------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~-~~~~~  162 (389)
                             |.+|++.+++.  ...+..  +...+..+.|+|++++|+.++.     +..|++||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                   99999987652  223333  3455789999999999888765     56899999987      43 35555


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCC----CcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecC
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVD----GLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d  236 (389)
                      . .+...+.. .|+|+|. .|+..+..    +.|.+||+.++.  ......+..+..  .+..++|+ +++.++++...+
T Consensus       283 ~-~~~~~~~~-~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~  356 (710)
T 2xdw_A          283 I-DNFEGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPE--ESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD  356 (710)
T ss_dssp             E-CSSSSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET
T ss_pred             e-CCCCcEEE-EEeccCC-EEEEEECCCCCCCEEEEEeCCCCC--cccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC
Confidence            5 45555554 5888886 65555443    369999998542  112344444433  67788998 677788888888


Q ss_pred             C--cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec--CCceEEEEEeccCC
Q 016457          237 E--TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--GAGTVGYFPVNYGG  304 (389)
Q Consensus       237 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--~dg~i~i~~~~~~~  304 (389)
                      +  .|.+|++.+++.+..+..            +...+..+.++|+++.+++...+  ..+.|+.||+.+++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~------------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPL------------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECC------------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCC------------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8  466778767877666654            34778889999998755443333  34789999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=3.1e-16  Score=136.05  Aligned_cols=239  Identities=12%  Similarity=0.049  Sum_probs=160.2

Q ss_pred             CCCeEEEEecCc-eeeeeecCcceEEEeecCCCCeEEEEecC---C--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           19 NVNSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSLMAVSLST---N--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        19 ~~~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      .++.|.+|++.. ....+   ..+..++|+|||+.||.++.+   +  .|.+|++.+++.......+ . +..++|+|++
T Consensus        41 ~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg  115 (347)
T 2gop_A           41 YENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDS  115 (347)
T ss_dssp             EEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTS
T ss_pred             ccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCC
Confidence            356788888753 23333   567889999999999988754   3  4888888888766555433 3 9999999999


Q ss_pred             CCCEEEEEecC---------------------------CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC
Q 016457           93 TPHVLHSCSSD---------------------------GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG  145 (389)
Q Consensus        93 ~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  145 (389)
                        +.|+.++.+                           ..|.+||+.+++.+..+.. . .+..++|+|++ .++++..+
T Consensus       116 --~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          116 --RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             --SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred             --CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence              677776632                           5799999998887455554 3 78899999988 66655443


Q ss_pred             ------C-eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC--------CcEEEEecCCCCCCCccceee
Q 016457          146 ------S-QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD--------GLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       146 ------~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~  210 (389)
                            . ...+|.+.+++ ...+. .+ ..+..+  +|+|+ .|+.++.+        ..|.+|| . +.     ...+
T Consensus       191 ~~~~~~~~~~~l~~~d~~~-~~~l~-~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d-~-~~-----~~~l  257 (347)
T 2gop_A          191 EIIPQYFKFWDIYIWEDGK-EEKMF-EK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD-G-KE-----VMGI  257 (347)
T ss_dssp             CSSCCSSCCEEEEEEETTE-EEEEE-EE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC-S-SC-----EEES
T ss_pred             cccccccccccEEEeCCCc-eEEec-cC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC-C-Cc-----eEec
Confidence                  2 34555444444 44444 34 445544  99996 67666543        4688888 3 21     2222


Q ss_pred             -eccCCceee-EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          211 -INVGTSVGK-VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       211 -~~~~~~i~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                       ..+...+.. +.|+  ++ ++++++.++.+++| +.+++....+.             +...+.+++|+|  .  ++++
T Consensus       258 ~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-------------~~~~v~~~~~s~--~--~~~~  316 (347)
T 2gop_A          258 LDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-------------GRHWIMGFDVDE--I--VVYL  316 (347)
T ss_dssp             STTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEEEEEC-------------SSSEEEEEEESS--S--EEEE
T ss_pred             cccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEec-------------CCCeEEeeeeeC--c--EEEE
Confidence             234566775 7886  55 88899999999999 87655433322             346788999998  4  5666


Q ss_pred             ecCCceE-EEEEec
Q 016457          289 GTGAGTV-GYFPVN  301 (389)
Q Consensus       289 g~~dg~i-~i~~~~  301 (389)
                      ++.++.. .+|.+.
T Consensus       317 ~~~~~~~~~l~~~~  330 (347)
T 2gop_A          317 KETATRLRELFTWD  330 (347)
T ss_dssp             EECSSSCCEEEEES
T ss_pred             EcCCCChHHheEeC
Confidence            6666554 677665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=5.5e-16  Score=133.14  Aligned_cols=259  Identities=13%  Similarity=0.073  Sum_probs=180.4

Q ss_pred             CCeEEEEeCCCceeeeeec------CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEE
Q 016457           59 TNVVKLYSPVTGQYSGECK------GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF  132 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  132 (389)
                      ++.|.++|.++++....+.      ........+.+.. +  .++++...++.|.+||..+++.+.++.. ......+++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~--~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~   91 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-G--IGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHF   91 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-T--EEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-C--EEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEE
Confidence            7899999999998766542      1224467788753 3  4667777789999999999999988864 477899999


Q ss_pred             eCCCCeEEEee-cCCeEEEEECcCCceeeeeeeccc----CCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCCCCcc
Q 016457          133 GGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESHV----EDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDINDDDL  206 (389)
Q Consensus       133 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~  206 (389)
                      ++++ .++++. .++.|.+||+.+++....+..+..    .....|++ ..+ .++++.. .++.|.++|+.++.    .
T Consensus        92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~----~  164 (328)
T 3dsm_A           92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDK----V  164 (328)
T ss_dssp             EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTE----E
T ss_pred             eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCe----E
Confidence            8776 677776 689999999999988877762210    14567777 333 2444443 48899999998652    2


Q ss_pred             ceeeeccCCceeeEEEecCCCcEEEEEecC----------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec
Q 016457          207 LESVINVGTSVGKVGFFGETNKHLWCLTHI----------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      ...+ ........++++ +++++++++..+          +.|.++|..+++....+...           .......++
T Consensus       165 ~~~i-~~g~~p~~i~~~-~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-----------~g~~p~~la  231 (328)
T 3dsm_A          165 VDEL-TIGIQPTSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-----------LGDWPSEVQ  231 (328)
T ss_dssp             EEEE-ECSSCBCCCEEC-TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----------TTCCCEEEE
T ss_pred             EEEE-EcCCCccceEEc-CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-----------CCCCceeEE
Confidence            2232 234456788888 677766666554          78999999998877666531           113578999


Q ss_pred             ccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC-CceeEEEe----cCCC
Q 016457          277 YPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS-HGIFGWTG----GEDG  351 (389)
Q Consensus       277 ~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~-~~~~l~s~----~~dg  351 (389)
                      ++|+++.+|  ....  .|.+||..+++....    ..+. .+......+         +++| ++.++++.    ..++
T Consensus       232 ~~~d~~~ly--v~~~--~v~~~d~~t~~~~~~----~~~~-~~~~~p~gi---------~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          232 LNGTRDTLY--WINN--DIWRMPVEADRVPVR----PFLE-FRDTKYYGL---------TVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             ECTTSCEEE--EESS--SEEEEETTCSSCCSS----CSBC-CCSSCEEEE---------EECTTTCCEEEEECTTSSSEE
T ss_pred             EecCCCEEE--EEcc--EEEEEECCCCceeee----eeec-CCCCceEEE---------EEcCCCCeEEEEcccccccCC
Confidence            999998543  3333  899999988765110    1111 113345666         8998 55556665    6789


Q ss_pred             eEEEEecc
Q 016457          352 RLCCWLSD  359 (389)
Q Consensus       352 ~v~iW~~~  359 (389)
                      .|.+|+.+
T Consensus       294 ~V~v~d~~  301 (328)
T 3dsm_A          294 IVYRYSPQ  301 (328)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            99999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.78  E-value=7.5e-16  Score=132.30  Aligned_cols=289  Identities=13%  Similarity=0.134  Sum_probs=197.5

Q ss_pred             EEeecCCCCeEEEEec-----CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEE
Q 016457           43 EIVPKNDWSLMAVSLS-----TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIR  107 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~  107 (389)
                      .....|+++.+++...     ++.|.++|..+++.+..+..-..+ . ++++|++  +++++++          .++.|.
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG--~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDG--SFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTS--SCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCC--CEEEEEcccccccccCCCCCEEE
Confidence            3456789988888865     579999999999999888755555 4 9999999  5666554          367899


Q ss_pred             EEEccCCeEEEEEEcCC-------CCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457          108 AWDTRSFHEVWSVTAGS-------QEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  178 (389)
                      +||..+.+.+..+....       .....++++|++++++++..  ++.|.++|+.+++.+.++..  ..   |....|.
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g---~~~~~P~  187 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PD---CYHIFPT  187 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CS---EEEEEEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CC---cceeecC
Confidence            99999999998887532       24667999999999999874  68999999999999998862  12   1223355


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCc--eeEEee
Q 016457          179 NQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFE  254 (389)
Q Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~  254 (389)
                      +...+++.+.||.+.+.++.+............ ....++ ....|.++++++++ .+.+|.+++.|+.+..  ....+.
T Consensus       188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred             CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence            545788888999999999975211100000011 111222 23466656776555 5568999999997654  222222


Q ss_pred             cccc-cccCCccCCCCCceeeecccCCCCeEEEEEec--------CCceEEEEEeccCCccccCCCeEEEecccceeeee
Q 016457          255 NARS-LASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--------GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRS  325 (389)
Q Consensus       255 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~  325 (389)
                      -... .....|   .......++++++++++|++...        ....|.++|..+++.      +..+..++  .+..
T Consensus       267 ~~~~~~~~~g~---~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv------~~~i~vg~--~~~~  335 (386)
T 3sjl_D          267 ALTEAERADGW---RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER------LAKFEMGH--EIDS  335 (386)
T ss_dssp             SSCHHHHHTTE---EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------EEEEEEEE--EECE
T ss_pred             ccccccccccc---cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE------EEEEECCC--Ccce
Confidence            0000 000011   11334457779999988877642        236799999999887      67776443  6778


Q ss_pred             ccCCCcccCCCCCCCce-eEEE-ecCCCeEEEEeccCC
Q 016457          326 VLPMPSVQGRPAQSHGI-FGWT-GGEDGRLCCWLSDDS  361 (389)
Q Consensus       326 ~~~~~~~~~~~~s~~~~-~l~s-~~~dg~v~iW~~~~~  361 (389)
                      +         ++++|++ +|++ ...++.|.++|....
T Consensus       336 l---------avs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          336 I---------NVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             E---------EECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             E---------EECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            8         9999996 5555 466999999999876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.2e-14  Score=123.09  Aligned_cols=276  Identities=8%  Similarity=-0.044  Sum_probs=187.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee-ecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...+.+++++++|+++++...++.|.+||.. ++.... ...+...+.++++.+++  .++++...++.|..||.. ++.
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG--EVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC--CEEEeCCCCCeEEEECCC-CcE
Confidence            4678999999999877766557899999988 554322 22345679999999988  577776668889999986 332


Q ss_pred             EEEEE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          117 VWSVT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       117 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                       ..+.  .....+.++++.+++..+++...++.|..||. +++............+..+++.+++. ++++...++.|..
T Consensus        90 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~  166 (299)
T 2z2n_A           90 -KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGR  166 (299)
T ss_dssp             -EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred             -EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEE
Confidence             3333  23567899999977765555555789999998 55443222213445689999999984 7777767789999


Q ss_pred             EecCCCCCCCcccee--eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          195 FDTGGDINDDDLLES--VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      ||. ++.     +..  .......+..+++. +++.++++...++.|.+||. +++.. .+....          +...+
T Consensus       167 ~~~-~g~-----~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~----------~~~~~  227 (299)
T 2z2n_A          167 ITE-SGD-----ITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-SGEIT-EFKIPT----------PNARP  227 (299)
T ss_dssp             ECT-TCC-----EEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEE-EEECSS----------TTCCE
T ss_pred             EcC-CCc-----EEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-CCcEE-EEECCC----------CCCCc
Confidence            998 332     111  12234467889998 56776666666789999998 66543 232111          33568


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-cccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                      ..++++++|.  +.++...++.|..|+. +++.       ..+. ..+...+.++         ++ ++|.++++.+ .+
T Consensus       228 ~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~-------~~~~~~~~~~~~~~i---------~~-~~g~l~v~~~-~~  286 (299)
T 2z2n_A          228 HAITAGAGID--LWFTEWGANKIGRLTS-NNII-------EEYPIQIKSAEPHGI---------CF-DGETIWFAME-CD  286 (299)
T ss_dssp             EEEEECSTTC--EEEEETTTTEEEEEET-TTEE-------EEEECSSSSCCEEEE---------EE-CSSCEEEEET-TT
T ss_pred             eeEEECCCCC--EEEeccCCceEEEECC-CCce-------EEEeCCCCCCccceE---------Ee-cCCCEEEEec-CC
Confidence            8999999987  5556556788999998 3332       2221 2344567777         77 8888777766 45


Q ss_pred             eEEEEeccC
Q 016457          352 RLCCWLSDD  360 (389)
Q Consensus       352 ~v~iW~~~~  360 (389)
                      .|..++.+.
T Consensus       287 ~l~~~~~~~  295 (299)
T 2z2n_A          287 KIGKLTLIK  295 (299)
T ss_dssp             EEEEEEEC-
T ss_pred             cEEEEEcCc
Confidence            666666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=7.3e-16  Score=146.53  Aligned_cols=279  Identities=10%  Similarity=-0.017  Sum_probs=181.4

Q ss_pred             cCCCCeEEEEecCC-----eEEEEeCCCceeeeee------cCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEE
Q 016457           47 KNDWSLMAVSLSTN-----VVKLYSPVTGQYSGEC------KGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWD  110 (389)
Q Consensus        47 ~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd  110 (389)
                      .|+|++++....++     .+.+.+...++....+      .+|...+..++|+|++  ++|+.+..++     .|++||
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg--~~la~~~~~~G~~~~~i~v~d  157 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDG--EYFAYGLSASGSDWVTIKFMK  157 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTS--SEEEEEEEETTCSCEEEEEEE
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCC--CEEEEEEcCCCCceEEEEEEE
Confidence            38888877665432     4455555444432221      2344568899999999  6787665443     899999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCe----------------EEEEECcCCcee--eeeee-cccCCee
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ----------------IQFWDWRNKKQV--ACLEE-SHVEDVT  171 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~--~~~~~-~~~~~v~  171 (389)
                      +.+++.+.....+ ..+..++|+|+++.|+.++.++.                |++|++.+++..  ..+.. .+...+.
T Consensus       158 ~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~  236 (710)
T 2xdw_A          158 VDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG  236 (710)
T ss_dssp             TTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             CCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE
Confidence            9999877643322 23678999999999999887655                999999887632  22221 2455678


Q ss_pred             EEEEecCCCCeEEEEeC-----CCcEEEEecCC------CCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC----
Q 016457          172 QVHFVPNNQNKVVSASV-----DGLICTFDTGG------DINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI----  236 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----  236 (389)
                      .+.|+|+|+ +|+.++.     +..|++||+.+      +.   .....+..+...+.. .|+ +++..|+..+..    
T Consensus       237 ~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          237 GAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGI---LKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPN  310 (710)
T ss_dssp             EEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSS---CCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTT
T ss_pred             EEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCc---cceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCC
Confidence            999999997 7766654     56899999975      21   124445555555544 466 455555555443    


Q ss_pred             CcEEEEEcCCCc--eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce--EEEEEeccCCccccCCCe
Q 016457          237 ETLSIWDWKDGQ--NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT--VGYFPVNYGGAATIGPPE  312 (389)
Q Consensus       237 ~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~--i~i~~~~~~~~~~~~~~~  312 (389)
                      ..|.+||+.++.  ....+..+.          ....+..+.|++++.  ++++...++.  |++|++.+++.      +
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~--lv~~~~~~g~~~l~~~~~~~g~~------~  372 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLVPEH----------EKDVLEWVACVRSNF--LVLCYLHDVKNTLQLHDLATGAL------L  372 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEECCC----------SSCEEEEEEEETTTE--EEEEEEETTEEEEEEEETTTCCE------E
T ss_pred             CEEEEEeCCCCCcccceeccCCC----------CCCeEEEEEEEcCCE--EEEEEEECCEEEEEEEECCCCCE------E
Confidence            369999998764  234444321          113577888886555  6777777875  55566645543      3


Q ss_pred             EEEecccceeeeeccCCCcccCCCCCCCceeEE-E---ecCCCeEEEEeccCCc
Q 016457          313 AVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW-T---GGEDGRLCCWLSDDSS  362 (389)
Q Consensus       313 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~-s---~~~dg~v~iW~~~~~~  362 (389)
                      ..+. .+...|..+         +++|++..|+ +   ....+.|.+|++....
T Consensus       373 ~~l~-~~~~~v~~~---------~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          373 KIFP-LEVGSVVGY---------SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEC-CCSSEEEEE---------ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EecC-CCCceEEEE---------ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5554 566777788         8888886555 2   2356789999987543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=1.3e-16  Score=151.37  Aligned_cols=275  Identities=6%  Similarity=-0.056  Sum_probs=178.5

Q ss_pred             ecCCCCeEEEEecCC-----eEEEEeCCCceeeeee------cCCCCcEEEEEEeCCCCCCEEE-----EEecCCeEEEE
Q 016457           46 PKNDWSLMAVSLSTN-----VVKLYSPVTGQYSGEC------KGHSSTVNQISFSGPSTPHVLH-----SCSSDGTIRAW  109 (389)
Q Consensus        46 ~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~~l~-----s~~~dg~i~iw  109 (389)
                      .+|+|++++....++     .|.+.+...++....+      .+|...+..++|+|++  ++|+     .|+.+..|++|
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG--~~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG--KKVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS--SEEEEEEEETTCSCCEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC--CEEEEEECCCCCceEEEEEE
Confidence            457898888776643     3444454444433222      2455679999999999  6777     34445689999


Q ss_pred             EccCCeEE-EEEEcCCCCeEEEEEeCCCCeEEEeecCCe-------------EEEEECcCCce----eeeeeecccCCee
Q 016457          110 DTRSFHEV-WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ-------------IQFWDWRNKKQ----VACLEESHVEDVT  171 (389)
Q Consensus       110 d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~----~~~~~~~~~~~v~  171 (389)
                      |+.+++.+ .. .........++|+|++..|+.++.+..             |++|++.++..    +.... .+...+.
T Consensus       153 dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~~  230 (695)
T 2bkl_A          153 DVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTFL  230 (695)
T ss_dssp             ETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCEE
T ss_pred             ECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEEE
Confidence            99998864 21 111112268999999999999888665             99999988762    22222 3456788


Q ss_pred             EEEEecCCCCeEEEEeCCC----cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe---cCCcEEEEEc
Q 016457          172 QVHFVPNNQNKVVSASVDG----LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT---HIETLSIWDW  244 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~i~d~  244 (389)
                      .+.|+|+|+ +|+.++.++    .|.++|..++     ....+..+...+....+. ++ .+++.+.   .++.|.+||+
T Consensus       231 ~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~-~g-~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          231 QSDLSRDGK-YLFVYILRGWSENDVYWKRPGEK-----DFRLLVKGVGAKYEVHAW-KD-RFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             EEEECTTSC-CEEEEEEETTTEEEEEEECTTCS-----SCEEEEECSSCCEEEEEE-TT-EEEEEECTTCTTCEEEEEBT
T ss_pred             EEEECCCCC-EEEEEEeCCCCceEEEEEcCCCC-----ceEEeecCCCceEEEEec-CC-cEEEEECCCCCCCEEEEEeC
Confidence            999999997 666666555    5677765432     244455555556666663 44 4444444   2578999999


Q ss_pred             CCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc-CCccccCCCeEEEeccc-c
Q 016457          245 KDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY-GGAATIGPPEAVLVGGH-T  320 (389)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~h-~  320 (389)
                      .++..  ...+..+.          ....+..++++ ++.  ++++...|+..++|.+.. ++.      +..+. .+ .
T Consensus       303 ~~~~~~~~~~l~~~~----------~~~~l~~~~~~-~~~--lv~~~~~dg~~~l~~~~~~g~~------~~~l~-~~~~  362 (695)
T 2bkl_A          303 AKPARASWKEIVPED----------SSASLLSVSIV-GGH--LSLEYLKDATSEVRVATLKGKP------VRTVQ-LPGV  362 (695)
T ss_dssp             TBCSGGGCEEEECCC----------SSCEEEEEEEE-TTE--EEEEEEETTEEEEEEEETTCCE------EEECC-CSSS
T ss_pred             CCCCccCCeEEecCC----------CCCeEEEEEEE-CCE--EEEEEEECCEEEEEEEeCCCCe------eEEec-CCCC
Confidence            87653  23333211          13457778887 444  678888899888887662 322      23343 33 4


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEE----EecCCCeEEEEeccCC
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGW----TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~----s~~~dg~v~iW~~~~~  361 (389)
                      ..|..+         ++++++..|+    +....+.|++|++...
T Consensus       363 ~~v~~~---------~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          363 GAASNL---------MGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             SEECCC---------BSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             eEEEEe---------ecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            566666         8899987766    4456688999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=2.4e-16  Score=149.40  Aligned_cols=242  Identities=12%  Similarity=-0.001  Sum_probs=166.7

Q ss_pred             ceEEEeecCCCCeEEEEe-----cCCeEEEEeCCCceee-eeecCCCCcE--EEEEEeCCCCCCEEEEEecCCe------
Q 016457           40 YVFEIVPKNDWSLMAVSL-----STNVVKLYSPVTGQYS-GECKGHSSTV--NQISFSGPSTPHVLHSCSSDGT------  105 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~-~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg~------  105 (389)
                      .+.+++|||||++||.+.     .+..|++||+.+++.+ ..   +...+  ..++|+|++  +.|+.++.|..      
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg--~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDS--KGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTS--SEEEEEECCCCTTSCGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccceEEecCC--CEEEEEEecCCCCCccc
Confidence            688999999999999543     3468999999998865 21   11222  679999999  78988888776      


Q ss_pred             -------EEEEEccCCe----EEEEEEcCCCCeEEEEEeCCCCeEEEeecCC----eEEEEECcCCceeeeeeecccCCe
Q 016457          106 -------IRAWDTRSFH----EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS----QIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus       106 -------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                             |++|++.++.    .+.....+...+.++.|+|++++++.++.++    .|.+||..+++ ...+. .+...+
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~-~~~~~~  274 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV-KGVGAK  274 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE-ECSSCC
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee-cCCCce
Confidence                   9999998775    3322233446789999999999998887755    67777765554 34444 355556


Q ss_pred             eEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          171 TQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      ....+ +++. +++.+.   .++.|.+||+.++.  ......+..+  ...+..++++  ++.++++...|+..++|.+.
T Consensus       275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA--RASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS--GGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC--ccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            66666 6675 555554   25789999997542  1112333333  4457788887  56788888899987777654


Q ss_pred             -CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe--cCCceEEEEEeccCCc
Q 016457          246 -DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG--TGAGTVGYFPVNYGGA  305 (389)
Q Consensus       246 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~  305 (389)
                       +++....+...           ....+..+.++|+++.+++...  ...+.|++||+.+++.
T Consensus       349 ~~g~~~~~l~~~-----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          349 LKGKPVRTVQLP-----------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTCCEEEECCCS-----------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCeeEEecCC-----------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             35555554421           2467888999999885443332  2357899999988764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=1.7e-15  Score=130.14  Aligned_cols=261  Identities=10%  Similarity=-0.006  Sum_probs=183.2

Q ss_pred             cCCCCeEEEEecCc--eeeeee------c-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEE
Q 016457           17 CDNVNSIKRFGLKN--SIQTNF------G-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQIS   87 (389)
Q Consensus        17 ~~~~~~i~~w~~~~--~~~~~~------~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~   87 (389)
                      ++.+++|.++|..+  ....+.      . ......+++.. +++.++...++.|.+||..+++.+..+. .......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            34588999999863  222221      1 34467777753 4455555567999999999999988885 346788999


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCC-----CCeEEEEEeCCCCeEEEee--cCCeEEEEECcCCceee
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGS-----QEIFCFSFGGSTDYLLAAG--CGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~  160 (389)
                      +++++  .++++...++.|.+||+.+++....+....     .....+++  .++.++++.  .++.|.++|+.+++.+.
T Consensus        91 ~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~  166 (328)
T 3dsm_A           91 FLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD  166 (328)
T ss_dssp             EEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred             EeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence            98887  455555488999999999999888887643     15567777  466777766  37899999999998888


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCC----------CcEEEEecCCCCCCCccceeeec-cCCceeeEEEecCCCcE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVD----------GLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFGETNKH  229 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  229 (389)
                      ++.  .......++++|+++ +++++..+          +.|.++|..++.    ....+.. .......++++ ++++.
T Consensus       167 ~i~--~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~~g~~p~~la~~-~d~~~  238 (328)
T 3dsm_A          167 ELT--IGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFKLGDWPSEVQLN-GTRDT  238 (328)
T ss_dssp             EEE--CSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECCTTCCCEEEEEC-TTSCE
T ss_pred             EEE--cCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecCCCCCceeEEEe-cCCCE
Confidence            876  234567899999985 66665544          789999998542    2222221 13468899999 56677


Q ss_pred             EEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe----cCCceEEEEEeccCCc
Q 016457          230 LWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG----TGAGTVGYFPVNYGGA  305 (389)
Q Consensus       230 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g----~~dg~i~i~~~~~~~~  305 (389)
                      |+++..  .|.+||..+++........          ........++++|++..+| ++.    ..++.|.+||.. ++.
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~----------~~~~~p~gi~vdp~~g~ly-va~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLE----------FRDTKYYGLTVNPNNGEVY-VADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBC----------CCSSCEEEEEECTTTCCEE-EEECTTSSSEEEEEEECTT-CCE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeec----------CCCCceEEEEEcCCCCeEE-EEcccccccCCEEEEECCC-CCE
Confidence            777654  8999999887653110000          0125678899999666544 454    578999999998 655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1.8e-15  Score=128.15  Aligned_cols=234  Identities=8%  Similarity=0.014  Sum_probs=164.0

Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCC-EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPH-VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      .+..+..+.....+++|+|++  + +++++..++.|..|+..++  ...+..+...+.+++++|++..+++...++.|.+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g--~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPAR--SAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGG--TEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             cEEEEecCCccccCCeEeCCC--CEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            344455566678899999998  5 7888888999999999877  6677777788999999988776555555789999


Q ss_pred             EECcCCceeeeeee---cccCCeeEEEEecCCCCeEEEE----e-------------CCCcEEEEecCCCCCCCccceee
Q 016457          151 WDWRNKKQVACLEE---SHVEDVTQVHFVPNNQNKVVSA----S-------------VDGLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       151 wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~~~~~~  210 (389)
                      ||..+++.......   .....+..++++|+|. ++++.    +             ..+.|..++.. +     .+...
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----~~~~~  167 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----TLSAP  167 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----CEEEE
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C-----CEEEe
Confidence            99987765433221   1123467899999995 77763    2             13456666654 2     23334


Q ss_pred             eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC-CCce---eEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          211 INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK-DGQN---VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      .........++|+ ++++.+++.+.++.|.+|++. +++.   ...+ ..           +...+..++++++|+  +.
T Consensus       168 ~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-----------~~~~p~~i~~d~~G~--l~  232 (296)
T 3e5z_A          168 IRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV-----------EPGKTDGLRVDAGGL--IW  232 (296)
T ss_dssp             ECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC-----------SSSCCCSEEEBTTSC--EE
T ss_pred             ecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC-----------CCCCCCeEEECCCCC--EE
Confidence            4455667899999 677777777778999999987 4544   2233 11           335567899999997  44


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCC-CCCceeEEEecCCC
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPA-QSHGIFGWTGGEDG  351 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-s~~~~~l~s~~~dg  351 (389)
                      ++.  ++.|.+|+.. ++.      +..+. .+.. +.++         +| +++++.|+.++.++
T Consensus       233 v~~--~~~v~~~~~~-g~~------~~~~~-~~~~-~~~~---------~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD-GDE------LGRVL-TPQT-TSNL---------CFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EEE--TTEEEEECTT-SCE------EEEEE-CSSC-CCEE---------EEESTTSCEEEEEETTE
T ss_pred             EEc--CCeEEEECCC-CCE------EEEEE-CCCC-ceeE---------EEECCCCCEEEEEcCCe
Confidence            444  7889999986 433      35554 4555 7777         88 68998888888764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1.5e-15  Score=128.69  Aligned_cols=239  Identities=8%  Similarity=-0.081  Sum_probs=166.6

Q ss_pred             CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      .....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.++++++++  .++++...++.|.+||..+++.
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEEETTTTEEEEECSTTCCE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEEecCCCeEEEEcCCCCcE
Confidence            45567999999998 7888888999999999876  56666677889999999998  6777766678999999988775


Q ss_pred             EEEEEcC----CCCeEEEEEeCCCCeEEE----ee-------------cCCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457          117 VWSVTAG----SQEIFCFSFGGSTDYLLA----AG-------------CGSQIQFWDWRNKKQVACLEESHVEDVTQVHF  175 (389)
Q Consensus       117 ~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  175 (389)
                      .......    ...+..++++|++..+++    +.             ..+.|..+|.. ++ +..+. .+......++|
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~-~~~~~~~gi~~  179 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI-RDRVKPNGLAF  179 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-CCCSSEEEEEE
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-cCCCCCccEEE
Confidence            4433221    234678999988876665    22             13466666655 43 33343 45667789999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecC-CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          176 VPNNQNKVVSASVDGLICTFDTG-GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +|++. .+++.+.++.|.+||+. .+. .......+......+..+++. +++.++++.  ++.|.+||.. ++.+..+.
T Consensus       180 s~dg~-~lv~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          180 LPSGN-LLVSDTGDNATHRYCLNARGE-TEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             CTTSC-EEEEETTTTEEEEEEECSSSC-EEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred             CCCCC-EEEEeCCCCeEEEEEECCCCc-CcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence            99996 77777788999999997 221 000011112244566789998 677655544  7899999986 77777776


Q ss_pred             cccccccCCccCCCCCceeeecc-cCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          255 NARSLASDSWTLDDVDYFVDCHY-PGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .            +.. +.+++| .|+++  .|+.++.+ .+.-++..+.++
T Consensus       254 ~------------~~~-~~~~~f~~~d~~--~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          254 T------------PQT-TSNLCFGGPEGR--TLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             C------------SSC-CCEEEEESTTSC--EEEEEETT-EEEEEECSCCBC
T ss_pred             C------------CCC-ceeEEEECCCCC--EEEEEcCC-eEEEEEcccccc
Confidence            5            334 888999 58888  45555555 355666665544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=2.4e-15  Score=125.41  Aligned_cols=219  Identities=12%  Similarity=0.048  Sum_probs=167.1

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCC
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQE  126 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~  126 (389)
                      .+++|++++.++.|.+||.++|+.+..+..+. ..+.++.+.|++  ++++  +.++.|..||. +++.+..+..+ ...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG--~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG--EILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS--CEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC--CEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            35689999999999999999999999998766 478999999999  6777  34778999998 89999999975 357


Q ss_pred             eEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeee-----cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC
Q 016457          127 IFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEE-----SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD  200 (389)
Q Consensus       127 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (389)
                      +.++.+.++++.+++.+. ++.|..+|. +++.+.++..     .+......+++.+++. ++++...++.|..||.. +
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-C
Confidence            889999999999888877 788888885 6777766641     1223455677889995 99999999999999998 4


Q ss_pred             CCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCC
Q 016457          201 INDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGE  280 (389)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (389)
                      +    .+..+. ....+..+... ++++++++++.++.|..+|..+++.+.++...... ..     ....+..+...++
T Consensus       156 ~----~~w~~~-~~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-~~-----~l~~~~~~~~~~~  223 (276)
T 3no2_A          156 Q----LLNSVK-LSGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-GV-----QLFFVAQLFPLQN  223 (276)
T ss_dssp             C----EEEEEE-CSSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-SC-----CCSEEEEEEECTT
T ss_pred             C----EEEEEE-CCCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-Cc-----cccccccceEcCC
Confidence            2    233333 23455667777 67888888888889999999999999888742100 00     1134677888888


Q ss_pred             CCeEEEEEe
Q 016457          281 GENLWVIGG  289 (389)
Q Consensus       281 ~~~~~l~~g  289 (389)
                      |.  ++++.
T Consensus       224 G~--i~v~~  230 (276)
T 3no2_A          224 GG--LYICN  230 (276)
T ss_dssp             SC--EEEEE
T ss_pred             CC--EEEEe
Confidence            87  55554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=2.8e-16  Score=138.75  Aligned_cols=269  Identities=7%  Similarity=-0.098  Sum_probs=163.8

Q ss_pred             CeEEEEecCc-eeeeeec-Ccc-eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE------------
Q 016457           21 NSIKRFGLKN-SIQTNFG-DDY-VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ------------   85 (389)
Q Consensus        21 ~~i~~w~~~~-~~~~~~~-~~~-v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~------------   85 (389)
                      ..|.+|++.. ....+.. ... ...+.|+|||+.|+.++.++.|++||+.+++.......+......            
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            3677777653 2333332 333 334789999999999999999999999988766555544443322            


Q ss_pred             -------EEEeCCCCCCEEEEE-----ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecC------C
Q 016457           86 -------ISFSGPSTPHVLHSC-----SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCG------S  146 (389)
Q Consensus        86 -------i~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~  146 (389)
                             +.|+|++  +.++.+     ..+..|.+||+.+++...... +...+..+.|+| ++..++.++.+      .
T Consensus       140 ~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (396)
T 3c5m_A          140 VGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA  216 (396)
T ss_dssp             EEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred             ccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence                   3456666  455443     356689999999887665543 467899999999 67767666542      4


Q ss_pred             eEEEEECcCCceeeeeeecc-cCCeeEEEEecCCCCeEEEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeE
Q 016457          147 QIQFWDWRNKKQVACLEESH-VEDVTQVHFVPNNQNKVVSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKV  220 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  220 (389)
                      .|.+||+..++.. .+.... ...+..++|+|+++ .|+.++.+     +.|++||+.++.     ...+..... .. +
T Consensus       217 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~g~-----~~~l~~~~~-~~-~  287 (396)
T 3c5m_A          217 RMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS-AMAYVSYFKGQTDRVIYKANPETLE-----NEEVMVMPP-CS-H  287 (396)
T ss_dssp             CCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS-CEEEEEEETTTCCEEEEEECTTTCC-----EEEEEECCS-EE-E
T ss_pred             eEEEEECCCCcee-EeeccCCCccccceEECCCCC-EEEEEecCCCCccceEEEEECCCCC-----eEEeeeCCC-CC-C
Confidence            6889998765433 333111 33578899999996 66665443     449999998652     122221221 23 8


Q ss_pred             EEecCCCcEEEEEe----------------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          221 GFFGETNKHLWCLT----------------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       221 ~~~~~~~~~l~~~~----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                      .|+|++++++++++                .+..|++||+.+++.. .+....... ..+..........+.|+|+|+.+
T Consensus       288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW-DVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC-CCBTTBSSTTCCCCEECTTSSEE
T ss_pred             CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc-ccccccccCCCCCceEccCCCeE
Confidence            89843778777654                3468999999877643 333211000 00000000125667899999843


Q ss_pred             EEEEecCCceEEEE--EeccCC
Q 016457          285 WVIGGTGAGTVGYF--PVNYGG  304 (389)
Q Consensus       285 ~l~~g~~dg~i~i~--~~~~~~  304 (389)
                       ++++..++...+|  ++.++.
T Consensus       366 -~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          366 -LFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             -EEEECTTSSCEEEEEECCTTC
T ss_pred             -EEEecCCCCceEEEEEEcccc
Confidence             2333345555555  444544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1e-15  Score=127.76  Aligned_cols=241  Identities=6%  Similarity=-0.075  Sum_probs=163.8

Q ss_pred             ceEEEeecCCCCeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           40 YVFEIVPKNDWSLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      ...++++++++++++ +...++.|.+|+..++........+...+.++++.+++  .++++.. ++.|.+||....... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g--~l~v~~~-~~~i~~~d~~~~~~~-  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG--TVYVTDF-NNRVVTLAAGSNNQT-  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC--CEEEEET-TTEEEEECTTCSCCE-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC--CEEEEcC-CCEEEEEeCCCceEe-
Confidence            678999999998666 43668899999976554332222344567889999988  5555555 889999998765433 


Q ss_pred             EEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          119 SVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       119 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      .+. .....+.++++++++..+++...++.|.+|+..+........ .....+..+++++++. ++++...++.|.+||.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCC-EEEEEGGGTEEEEECT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCC-EEEEECCCCEEEEEec
Confidence            232 223678999999877655555557899999866544333222 2334678999999985 7777777889999998


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecc
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY  277 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (389)
                      .+..    ...........+..+++. +++.++++...++.|.+|+........ ...           .+...+.++++
T Consensus       179 ~~~~----~~~~~~~~~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-----------~~~~~p~~i~~  241 (270)
T 1rwi_B          179 ESNN----QVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-----------TGLNTPLAVAV  241 (270)
T ss_dssp             TTCC----EEECCCSSCCSEEEEEEC-TTCCEEEEETTTSCEEEECTTCSCCEE-CCC-----------CSCSCEEEEEE
T ss_pred             CCCc----eEeecccCCCCceEEEEC-CCCCEEEEECCCCcEEEEcCCCCccee-ecc-----------CCCCCceeEEE
Confidence            8532    111111222567889998 666666666678899999986543322 211           02256789999


Q ss_pred             cCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          278 PGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +++|+  ++++...++.|++|+....+.
T Consensus       242 ~~~g~--l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          242 DSDRT--VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CTTCC--EEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCC--EEEEECCCCEEEEEcCCCccc
Confidence            99997  667888899999999886543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=2.7e-15  Score=125.14  Aligned_cols=185  Identities=11%  Similarity=0.094  Sum_probs=145.2

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCC-CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEE
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQV  173 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  173 (389)
                      ++|++++.|+.|.+||..+++.+.++..+. ..+.++.+.|+++.++  +.++.|..||. +++.+.++..+....+.++
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            599999999999999999999999999875 4789999998887666  45788999998 8999998883223578899


Q ss_pred             EEecCCCCeEEEEeC-CCcEEEEecCCCCCCCccceeee------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          174 HFVPNNQNKVVSASV-DGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       174 ~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .+.++|. .+++.+. ++.|..+|....     .+..+.      .+......+++. ++++++++...++.|..||.. 
T Consensus        83 ~~~~dG~-~lv~~~~~~~~v~~vd~~Gk-----~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           83 RILPDGN-ALVAWCGHPSTILEVNMKGE-----VLSKTEFETGIERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EECTTSC-EEEEEESTTEEEEEECTTSC-----EEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTT-
T ss_pred             EECCCCC-EEEEecCCCCEEEEEeCCCC-----EEEEEeccCCCCcccccccCceEC-CCCCEEEEecCCCEEEEECCC-
Confidence            9999995 8888776 777888876422     122221      122244566777 788899999999999999988 


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++.+.++...             ....++.+.++|+  ++++++.++.|..+|..+++.
T Consensus       155 G~~~w~~~~~-------------~~~~~~~~~~~g~--~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          155 GQLLNSVKLS-------------GTPFSSAFLDNGD--CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             SCEEEEEECS-------------SCCCEEEECTTSC--EEEECBTTSEEEEECTTTCCE
T ss_pred             CCEEEEEECC-------------CCccceeEcCCCC--EEEEeCCCCeEEEEeCcCCcE
Confidence            9998888752             3345567788888  788888888999999998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.75  E-value=1.8e-14  Score=125.39  Aligned_cols=287  Identities=11%  Similarity=0.109  Sum_probs=189.8

Q ss_pred             eecCCCCeEEEEec--CC---eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEE
Q 016457           45 VPKNDWSLMAVSLS--TN---VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAW  109 (389)
Q Consensus        45 ~~~~~~~~l~~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iw  109 (389)
                      ...|+++++++...  ..   .|.++|..+++.+..+.....+  .++++|++  +.++.+.          .++.|.+|
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg--~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSG--SEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCC--CEEEEEeccccccccCCCCCeEEEE
Confidence            34577777777653  22   8899999999988887754444  89999999  6777765          36789999


Q ss_pred             EccCCeEEEEEEcC-------CCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeee-eeecccCCeeEEEEecCC
Q 016457          110 DTRSFHEVWSVTAG-------SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVAC-LEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       110 d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~  179 (389)
                      |..+.+.+..+...       ......++++|++++++++..  ++.|.++| .+++.+.+ +.  ...   ++.+.|.+
T Consensus       103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~  176 (373)
T 2mad_H          103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGA  176 (373)
T ss_pred             ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCC
Confidence            99998888877643       123558999999999999875  57899999 99988877 65  222   35566777


Q ss_pred             CCeEEEEeCCCcEEEEecCCCCCCCccc-eeeeccCCce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCc--eeEEeec
Q 016457          180 QNKVVSASVDGLICTFDTGGDINDDDLL-ESVINVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFEN  255 (389)
Q Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~  255 (389)
                      +..+++.+.||.+.++|. ++....... ........++ ....+.+.++.++++ +..+.+.+.|+....  .+..+..
T Consensus       177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeee
Confidence            667888889999999999 553110000 0000111121 234455334444444 467899999987552  2222221


Q ss_pred             cccc-ccCCccCCCCCceeeecccCCCCeEEEEEec--------CCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          256 ARSL-ASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--------GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       256 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      .... ....|   .......+.++|+++++|++...        .++.|.++|..+++.      +..+..++  ....+
T Consensus       255 ~~~~~~~~~~---~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v------v~~i~~g~--~p~~i  323 (373)
T 2mad_H          255 LSGGRKADTW---RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------SSQISLGH--DVDAI  323 (373)
T ss_pred             cCCcccccce---ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE------EEEEECCC--CcCeE
Confidence            0000 00001   11234447789999977665431        246899999998776      56665333  45677


Q ss_pred             cCCCcccCCCCCCCce-eEEEec-CCCeEEEEeccCCcc
Q 016457          327 LPMPSVQGRPAQSHGI-FGWTGG-EDGRLCCWLSDDSSE  363 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~-~l~s~~-~dg~v~iW~~~~~~~  363 (389)
                               +|+|||+ .|+++. .++.|.++|+.....
T Consensus       324 ---------~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          324 ---------SVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             ---------EECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence                     9999999 788877 589999999987643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=2.9e-15  Score=125.02  Aligned_cols=240  Identities=10%  Similarity=-0.022  Sum_probs=162.7

Q ss_pred             cEEEEEEeCCCCCCEEE-EEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee
Q 016457           82 TVNQISFSGPSTPHVLH-SCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  160 (389)
                      ...++++.+++  .+++ +...++.|.+|+..+.........+...+.++++++++. ++++..++.|.+||...... .
T Consensus        25 ~p~~i~~~~~g--~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~-~  100 (270)
T 1rwi_B           25 SPSGVAVDSAG--NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ-T  100 (270)
T ss_dssp             CEEEEEECTTC--CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-E
T ss_pred             CccceEECCCC--CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-e
Confidence            67889999988  5666 446788999999765443221122235678899998776 55554488999999876543 2


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      .+.......+..+++++++. ++++...++.|.+|+..+..    ...........+..+++. +++.++++...++.|.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT----QTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS----CEECCCCSCCSCCCEEEC-TTCCEEEEEGGGTEEE
T ss_pred             eeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce----eEeeccccCCCceeEEEe-CCCCEEEEECCCCEEE
Confidence            33212335689999999985 77777778899999765321    111111222467889998 5677666666788999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                      +||............            +...+..++++++|.  +.++...++.|.+|+......       ......+.
T Consensus       175 ~~~~~~~~~~~~~~~------------~~~~p~~i~~d~~g~--l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~  233 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT------------DITAPWGIAVDEAGT--VYVTEHNTNQVVKLLAGSTTS-------TVLPFTGL  233 (270)
T ss_dssp             EECTTTCCEEECCCS------------SCCSEEEEEECTTCC--EEEEETTTSCEEEECTTCSCC-------EECCCCSC
T ss_pred             EEecCCCceEeeccc------------CCCCceEEEECCCCC--EEEEECCCCcEEEEcCCCCcc-------eeeccCCC
Confidence            999876654332211            225678899999985  556666788999999876443       22221233


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ..+.++         +++++|+++++...++.|+++++...
T Consensus       234 ~~p~~i---------~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          234 NTPLAV---------AVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             SCEEEE---------EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCceeE---------EECCCCCEEEEECCCCEEEEEcCCCc
Confidence            456677         89999998889889999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.71  E-value=2.5e-13  Score=114.96  Aligned_cols=276  Identities=8%  Similarity=-0.055  Sum_probs=183.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee-eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG-ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...+.++++.++|++.++...++.|.+||.. ++... .+..+...+.++++.+++  .++++...++.|..||.. ++.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG--DIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC--CEEEEecCCCeEEEECCC-CCe
Confidence            4678899999999877776668999999987 55433 223334678999999888  566666667889999987 554


Q ss_pred             EEEEEc--CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          117 VWSVTA--GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       117 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      . .+..  ....+.++++.+++..+++...++.|..+|.. ++............+..+++.+++. ++++...++.|..
T Consensus        95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~  171 (300)
T 2qc5_A           95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGR  171 (300)
T ss_dssp             E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEE
T ss_pred             E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEE
Confidence            3 3332  34678999999777655555557899999987 5544221112446789999999985 7776666788999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ||.. +.  .. ..........+..+++. +++.++++....+.|.+|+. +++.... ....          +...+.+
T Consensus       172 ~~~~-g~--~~-~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~----------~~~~~~~  234 (300)
T 2qc5_A          172 ITNT-GK--LE-EYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITT-TGEISEY-DIPT----------PNARPHA  234 (300)
T ss_dssp             ECTT-CC--EE-EEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEE-ECSS----------TTCCEEE
T ss_pred             ECCC-Cc--EE-EeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCC----------CCCCceE
Confidence            9984 21  01 11111233467889998 56776666666778999998 4544332 1110          2356788


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      ++++++|.  +.++...++.|..|+. +++.       ..+. ......+.++         +++++|.++++.. . .|
T Consensus       235 i~~d~~g~--l~v~~~~~~~i~~~~~-~g~~-------~~~~~~~~~~~~~~i---------~~~~~g~l~v~~~-~-~i  293 (300)
T 2qc5_A          235 ITAGKNSE--IWFTEWGANQIGRITN-DNTI-------QEYQLQTENAEPHGI---------TFGKDGSVWFALK-C-KI  293 (300)
T ss_dssp             EEECSTTC--EEEEETTTTEEEEECT-TSCE-------EEEECCSTTCCCCCE---------EECTTSCEEEECS-S-EE
T ss_pred             EEECCCCC--EEEeccCCCeEEEECC-CCcE-------EEEECCccCCcccee---------EeCCCCCEEEEcc-C-ce
Confidence            99999987  5556556788999998 3433       2221 1223445556         7888988766655 4 66


Q ss_pred             EEEec
Q 016457          354 CCWLS  358 (389)
Q Consensus       354 ~iW~~  358 (389)
                      ..++.
T Consensus       294 ~~~~p  298 (300)
T 2qc5_A          294 GKLNL  298 (300)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            66654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.69  E-value=6.7e-14  Score=120.24  Aligned_cols=261  Identities=15%  Similarity=0.072  Sum_probs=177.7

Q ss_pred             CCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEe----------cCCeEEEEeCCCceeeeeecCC-------
Q 016457           20 VNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSL----------STNVVKLYSPVTGQYSGECKGH-------   79 (389)
Q Consensus        20 ~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~-------   79 (389)
                      ++.|.+.|..  +.+.++.. ..+ . ++++|||++++++.          .++.|.+||..+++.+..+.-.       
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            5788888875  45555554 333 4 99999999988876          3678999999999988877422       


Q ss_pred             CCcEEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcC-C
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRN-K  156 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~  156 (389)
                      ...-..++|+|++  ++++.+..  ++.|.++|+.+++.+.++....  . ...+......+++.+.||.+.+.++.+ +
T Consensus       136 g~~P~~~a~spDG--k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          136 GTYPWMTSLTPDG--KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             SCCGGGEEECTTS--SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             CCCCceEEEcCCC--CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCC
Confidence            1245679999999  67777763  6899999999999999997642  1 223332345667777899999999876 5


Q ss_pred             ceeeeeee---cccCCe-eEEEEe-cCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee----------ccCCceeeEE
Q 016457          157 KQVACLEE---SHVEDV-TQVHFV-PNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI----------NVGTSVGKVG  221 (389)
Q Consensus       157 ~~~~~~~~---~~~~~v-~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~i~~~~  221 (389)
                      +.......   ....++ ....|. ++|  .++..+.+|.|++.|+.+...  .....+.          -.......++
T Consensus       211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a  286 (386)
T 3sjl_D          211 TPEITHTEVFHPEDEFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVA  286 (386)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             eEEEeecceeccccccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceee
Confidence            54321110   111222 124665 555  444466789999999985421  1111111          0122344577


Q ss_pred             EecCCCcEEEEEec----------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          222 FFGETNKHLWCLTH----------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       222 ~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      ++ ++++.+++...          .++|.++|+.+++.+..+...             ..+.++.+++|++.+++++...
T Consensus       287 ~~-~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-------------~~~~~lavs~D~~~~ly~tn~~  352 (386)
T 3sjl_D          287 YH-RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-------------HEIDSINVSQDEKPLLYALSTG  352 (386)
T ss_dssp             EE-TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-------------EEECEEEECSSSSCEEEEEETT
T ss_pred             EC-CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-------------CCcceEEECCCCCeEEEEEcCC
Confidence            78 55566666543          257999999999999988753             4678999999997444555667


Q ss_pred             CceEEEEEeccCCc
Q 016457          292 AGTVGYFPVNYGGA  305 (389)
Q Consensus       292 dg~i~i~~~~~~~~  305 (389)
                      ++.|.++|..+++.
T Consensus       353 ~~~VsViD~~t~k~  366 (386)
T 3sjl_D          353 DKTLYIHDAESGEE  366 (386)
T ss_dssp             TTEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcE
Confidence            89999999998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=8.9e-14  Score=118.68  Aligned_cols=244  Identities=10%  Similarity=0.022  Sum_probs=163.7

Q ss_pred             CcceEEEeecCCCCeEEE-------EecCCeEEEEeCCCceeeeeec----CCCCcEEEEEEeCC-CCCCEEEEEecCCe
Q 016457           38 DDYVFEIVPKNDWSLMAV-------SLSTNVVKLYSPVTGQYSGECK----GHSSTVNQISFSGP-STPHVLHSCSSDGT  105 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~-------~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~~~l~s~~~dg~  105 (389)
                      -....+++|++++.++++       +..++.|.+||..+++......    ++...+.++++.++ +   .|+.++..+.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g---~l~v~~~~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---QLFVADMRLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS---EEEEEETTTE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC---cEEEEECCCC
Confidence            445678999999987777       5678999999988776543221    24567899999998 6   4444444557


Q ss_pred             EEEEEccCCeEEEE-EEcC----CCCeEEEEEeCCCCeEEEeecC---------------CeEEEEECcCCceeeeeeec
Q 016457          106 IRAWDTRSFHEVWS-VTAG----SQEIFCFSFGGSTDYLLAAGCG---------------SQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus       106 i~iwd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~~~  165 (389)
                      |.+||.. ++.... ....    ...+.++++++++..+++...+               +.|..||.. ++.....  .
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--T  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--E
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--c
Confidence            9999988 665432 2211    2358899999887666555444               567778765 5443322  2


Q ss_pred             ccCCeeEEEEe----cCCCCeEEEEeCCCcEEEEecC-CCCCC-CccceeeeccC-CceeeEEEecCCCcEEEEEecCCc
Q 016457          166 HVEDVTQVHFV----PNNQNKVVSASVDGLICTFDTG-GDIND-DDLLESVINVG-TSVGKVGFFGETNKHLWCLTHIET  238 (389)
Q Consensus       166 ~~~~v~~~~~~----~~~~~~l~~~~~d~~i~i~d~~-~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~  238 (389)
                      +......++++    |+++.++++...++.|.+||+. .+... ......+..+. ..+..+++. +++.++++...++.
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSH  248 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCE
Confidence            34556889999    9985244555568899999976 22100 00111122222 557889998 67777777778889


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      |.+||..+++.+..+..            +...+.+++++++++.+| ++...++.|..|++..
T Consensus       249 i~~~d~~~g~~~~~~~~------------~~~~~~~i~~~~dg~~l~-v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIRC------------PFEKPSNLHFKPQTKTIF-VTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCBSCSEEEEC------------SSSCEEEEEECTTSSEEE-EEETTTTEEEEEECSS
T ss_pred             EEEEcCCCCcEeEEEeC------------CCCCceeEEECCCCCEEE-EEeCCCCeEEEEeCCC
Confidence            99999987777666654            336788999999987443 3445567899998875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=5.5e-13  Score=116.05  Aligned_cols=258  Identities=10%  Similarity=0.008  Sum_probs=171.1

Q ss_pred             eEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEe----------cCCeEEEEeCCCceeeeeecCC-------CCc
Q 016457           22 SIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSL----------STNVVKLYSPVTGQYSGECKGH-------SST   82 (389)
Q Consensus        22 ~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~-------~~~   82 (389)
                      .|.++|..  +.+.++.....- .++++|||+.++++.          .++.|.+||..+++.+..+...       ...
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            78888875  344444432223 999999999999886          3678999999988877765422       123


Q ss_pred             EEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCce
Q 016457           83 VNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~  158 (389)
                      -..++|+|++  ++|+.+..  ++.|.++| .+++.+.. +... .   ++.+.|.++. +++.+.||.+.++|. +++.
T Consensus       127 p~~~~~spDG--~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          127 SWMNANTPNN--ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             ccceEECCCC--CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            4589999999  68887764  57899999 99988877 6543 2   2444455544 445556999999999 7776


Q ss_pred             eeeeee----cccCC-eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec----------cCCceeeEEEe
Q 016457          159 VACLEE----SHVED-VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN----------VGTSVGKVGFF  223 (389)
Q Consensus       159 ~~~~~~----~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~i~~~~~~  223 (389)
                      +.....    ....+ .....+.+++. .++..+..+.+.+.|+.+...  ..+..+..          .......++++
T Consensus       199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~v~vid~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          199 AGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             EEEEeccccccCCcceeecceeEecCC-EEEEEcCCceEEEEeccCCcc--eEeeeeeecCCcccccceecCceEeEEEC
Confidence            633210    01112 12345666664 444444788999999974321  11111110          11223346777


Q ss_pred             cCCCcEEEEEec----------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc
Q 016457          224 GETNKHLWCLTH----------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG  293 (389)
Q Consensus       224 ~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg  293 (389)
                       +++..++++..          .+.|.++|+.+++.+..+...             .....+.|+|||+.+++++...++
T Consensus       276 -~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-------------~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          276 -KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-------------HDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             -CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-------------CCcCeEEECCCCCeEEEEEcCCCC
Confidence             56666666543          358999999999998888642             457899999999843344443589


Q ss_pred             eEEEEEeccCCc
Q 016457          294 TVGYFPVNYGGA  305 (389)
Q Consensus       294 ~i~i~~~~~~~~  305 (389)
                      .|.+||..+++.
T Consensus       342 ~V~ViD~~t~~v  353 (373)
T 2mad_H          342 VLHIYDAGAGDQ  353 (373)
T ss_pred             eEEEEECCCCCE
Confidence            999999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=1.6e-12  Score=110.00  Aligned_cols=258  Identities=7%  Similarity=-0.074  Sum_probs=169.1

Q ss_pred             CCeEEEEecCceeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-eeecCCCCcEEEEEEeCCCCCC
Q 016457           20 VNSIKRFGLKNSIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-GECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        20 ~~~i~~w~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      ++.|..|+.......+..   ...+.++++++++.++++...++.|..|+.. ++.. ..+......+..+++.+++  .
T Consensus        35 ~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g--~  111 (299)
T 2z2n_A           35 ANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG--D  111 (299)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--C
T ss_pred             CCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC--C
Confidence            456777776644443331   4678999999999877776668899999976 4322 1222345678999999888  5


Q ss_pred             EEEEEecCCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      ++++...++.|..||. +++.... .......+.++++.+++..+++...++.|..||. +++............+..++
T Consensus       112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~  189 (299)
T 2z2n_A          112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGIT  189 (299)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEE
Confidence            7777667889999998 5544322 2223467899999977755554545789999998 66544321113445688999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +++++. ++++...++.|.+||. ++.   ............+..+++. +++.++++...++.|..||. +++ +..+.
T Consensus       190 ~~~~g~-l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~  261 (299)
T 2z2n_A          190 KGNDDA-LWFVEIIGNKIGRITT-SGE---ITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTS-NNI-IEEYP  261 (299)
T ss_dssp             ECTTSS-EEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEEET-TTE-EEEEE
T ss_pred             ECCCCC-EEEEccCCceEEEECC-CCc---EEEEECCCCCCCceeEEEC-CCCCEEEeccCCceEEEECC-CCc-eEEEe
Confidence            999985 7776666889999998 432   1111112234568899998 66775555557789999998 453 33332


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      ...          +...+.++++ +++.  +.++.. .+.|..++..+++
T Consensus       262 ~~~----------~~~~~~~i~~-~~g~--l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          262 IQI----------KSAEPHGICF-DGET--IWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             CSS----------SSCCEEEEEE-CSSC--EEEEET-TTEEEEEEEC---
T ss_pred             CCC----------CCCccceEEe-cCCC--EEEEec-CCcEEEEEcCccc
Confidence            111          3356788888 7776  444444 5667778776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=2.4e-14  Score=136.71  Aligned_cols=277  Identities=8%  Similarity=0.017  Sum_probs=172.7

Q ss_pred             ecCCCCeEEEEecCCe---EEEE--eCC---Cceeeeee------cCCCCcEEEEEEeCCCCCCEEEEEecC-----CeE
Q 016457           46 PKNDWSLMAVSLSTNV---VKLY--SPV---TGQYSGEC------KGHSSTVNQISFSGPSTPHVLHSCSSD-----GTI  106 (389)
Q Consensus        46 ~~~~~~~l~~~~~d~~---i~iw--~~~---~~~~~~~~------~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i  106 (389)
                      ..|+|++++....++.   -.||  +..   .++....+      .+|...+..++|+|++  ++|+.+..+     ..|
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG--~~la~~~~~~G~e~~~i  191 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG--RLLAYSVQDGGSDWRTV  191 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS--SEEEEEEEETTCSEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC--CEEEEEEcCCCCceEEE
Confidence            3589998887765432   4445  433   33322221      2244478899999999  677776543     369


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCe--------------EEEEECcCCce--eeeeee-cccCC
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ--------------IQFWDWRNKKQ--VACLEE-SHVED  169 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~~--~~~~~~-~~~~~  169 (389)
                      ++||+.+++.+... .+...+..++|+|+ +.|+.+..++.              |++|++.++..  ...+.. .+...
T Consensus       192 ~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          192 KFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            99999999876532 11222357899999 88888876543              89999877653  122221 23335


Q ss_pred             eeEEEEecCCCCeEEEEeCCC-----cEEEEecCCCCCCCcc-ceeeeccCCceeeEEEecCCCcEEEEEecC----CcE
Q 016457          170 VTQVHFVPNNQNKVVSASVDG-----LICTFDTGGDINDDDL-LESVINVGTSVGKVGFFGETNKHLWCLTHI----ETL  239 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~i  239 (389)
                      +..+.|+|+|+ +|+..+.++     .|++||+.++.   .. ...+..+...+.... + ++++.|+..+.+    +.|
T Consensus       270 ~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~l~~~~~~~~~~~-~-~dg~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          270 GHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGK---IGPVTALIPDLKAQWDFV-D-GVGDQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             EEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTE---ECCCEEEECSSSSCEEEE-E-EETTEEEEEECTTCTTCEE
T ss_pred             EEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCC---CcccEEecCCCCceEEEE-e-ccCCEEEEEECCCCCCCEE
Confidence            88999999996 777666443     79999997531   11 334444444444443 4 456666666653    459


Q ss_pred             EEEEcCCCc-eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec-cCCccccCCCeEEEec
Q 016457          240 SIWDWKDGQ-NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN-YGGAATIGPPEAVLVG  317 (389)
Q Consensus       240 ~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~-~~~~~~~~~~~~~~~~  317 (389)
                      .+||+.++. ....+...           +...+..+.++ ++.  ++++...|+..+||.+. .++.      ...+..
T Consensus       344 ~~~d~~~~~~~~~~l~~~-----------~~~~l~~~~~~-~~~--lv~~~~~dg~~~l~~~~~~g~~------~~~l~~  403 (741)
T 1yr2_A          344 VRVDLSGSTPRFDTVVPE-----------SKDNLESVGIA-GNR--LFASYIHDAKSQVLAFDLDGKP------AGAVSL  403 (741)
T ss_dssp             EEEECSSSSCEEEEEECC-----------CSSEEEEEEEE-BTE--EEEEEEETTEEEEEEEETTSCE------EEECBC
T ss_pred             EEEeCCCCccccEEEecC-----------CCCeEEEEEEE-CCE--EEEEEEECCEEEEEEEeCCCCc------eeeccC
Confidence            999988752 33333321           33456667776 333  67788888888877665 2322      344432


Q ss_pred             ccceeeeeccCCCcccCCCCCCCceeEE----EecCCCeEEEEeccCC
Q 016457          318 GHTAVVRSVLPMPSVQGRPAQSHGIFGW----TGGEDGRLCCWLSDDS  361 (389)
Q Consensus       318 ~h~~~v~~~~~~~~~~~~~~s~~~~~l~----s~~~dg~v~iW~~~~~  361 (389)
                      .+...|..+         ++++++..|+    +....+.|++|++...
T Consensus       404 ~~~~~v~~~---------~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          404 PGIGSASGL---------SGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             SSSCEEEEE---------ECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             CCCeEEEEe---------ecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            235667777         8889887666    4456689999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.67  E-value=8.6e-14  Score=121.76  Aligned_cols=286  Identities=13%  Similarity=0.097  Sum_probs=192.4

Q ss_pred             cCCCCeEEEEecC-----CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEEEc
Q 016457           47 KNDWSLMAVSLST-----NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAWDT  111 (389)
Q Consensus        47 ~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iwd~  111 (389)
                      .++++.+++....     +.|.++|..+++.+..+..-..+  .++++|++  +.++.+.          .++.|.++|.
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg--k~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG--SFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS--SCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCC--CEEEEEeccccccccCCCCCEEEEEEC
Confidence            3577777766553     69999999999999988755555  89999999  5666654          4678999999


Q ss_pred             cCCeEEEEEEcC-------CCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCe
Q 016457          112 RSFHEVWSVTAG-------SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       112 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  182 (389)
                      .+++.+..+...       ......+.++|++++++++..  ++.|.++|+.+++.+.++.-  ..   +....|++...
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g---~~~~~p~g~~~  231 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PD---CYHIFPASPTV  231 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CS---EEEEEEEETTE
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CC---ceeeccCCCcE
Confidence            999999888643       134567899999999999874  58999999999999888872  11   13445555457


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCcee--EEeecc--c
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV--ASFENA--R  257 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~--~  257 (389)
                      +++.+.||.+.+.++.++.........+.....++ ..+.+. +++..++..+..+.+.+.|+......  ..+...  .
T Consensus       232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            77888889888888853321100000011111121 235566 55666666677889999998754322  111100  0


Q ss_pred             ccccCCccCCCCCceeeecccCCCCeEEEEEec--------CCceEEEEEeccCCccccCCCeEEEecccceeeeeccCC
Q 016457          258 SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--------GAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPM  329 (389)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  329 (389)
                      ... ..|   .......++++|+++++|++...        .++.|.++|..+.+.      +..+..+.  ....+   
T Consensus       311 ~i~-~g~---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv------v~~I~vg~--~P~gi---  375 (426)
T 3c75_H          311 ERA-DDW---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER------INKIELGH--EIDSI---  375 (426)
T ss_dssp             TGG-GTE---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------EEEEEEEE--EECEE---
T ss_pred             ccc-ccc---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE------EEEEECCC--CcCeE---
Confidence            000 000   01222346899999987766432        246899999999877      66665332  46777   


Q ss_pred             CcccCCCCCCCce-eEEEec-CCCeEEEEeccCCcc
Q 016457          330 PSVQGRPAQSHGI-FGWTGG-EDGRLCCWLSDDSSE  363 (389)
Q Consensus       330 ~~~~~~~~s~~~~-~l~s~~-~dg~v~iW~~~~~~~  363 (389)
                            +|+|||+ +|+++. .++.|.++|+.....
T Consensus       376 ------a~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          376 ------NVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             ------EECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ------EEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence                  8999998 788877 599999999987643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=1.7e-13  Score=121.01  Aligned_cols=247  Identities=14%  Similarity=0.115  Sum_probs=167.2

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHE  116 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~  116 (389)
                      .....++|+++++++++...++.|++||..+++........ .... ++|++++  +.|+++..++  .|.+++...+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g--~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDK--QRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTS--SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCC--CcEEEEecCCCceEEEEEcCCCce
Confidence            35789999999987777777799999999887766555442 3334 9999998  6888887766  788898876654


Q ss_pred             EEEE----EcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee----eeecccCCe--eEEEEecCCCCeEEEE
Q 016457          117 VWSV----TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC----LEESHVEDV--TQVHFVPNNQNKVVSA  186 (389)
Q Consensus       117 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v--~~~~~~~~~~~~l~~~  186 (389)
                      ...+    ......+.+++++|.++.|+++..++.|..||..++.....    .. ++...-  ..++|+|++..++++-
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-GSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-SCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-CCCCCCccccEEEeCCCCEEEEEe
Confidence            4444    21346678999998778888877788999999987653222    11 222222  3999999644477777


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccC---------------CceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCcee
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVINVG---------------TSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQNV  250 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~  250 (389)
                      ..++.|+.|+....      ...+.+..               .....++++ +++.++++-+ .++.|+.|++.++...
T Consensus       286 ~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d-~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          286 QNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVD-EDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             TTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC-TTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe-CCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            77889999998732      22222221               346789999 6777777777 7889999998777643


Q ss_pred             EEeeccccccc---CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          251 ASFENARSLAS---DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       251 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                       .+.+......   ..-....-.....+++++++.  ++++-..++.|+.+++
T Consensus       359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~--lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG--YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE--EEEEESTTCEEEEEEE
T ss_pred             -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC--EEEEECCCCeEEEEEe
Confidence             3333210000   000000124578899999865  6677777888888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=6.4e-14  Score=133.79  Aligned_cols=243  Identities=11%  Similarity=0.048  Sum_probs=161.8

Q ss_pred             ceEEEeecCCCCeEEEEecC-----CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCe---------
Q 016457           40 YVFEIVPKNDWSLMAVSLST-----NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGT---------  105 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~---------  105 (389)
                      .+..++|||||++||.+..+     ..|++||+.+++.+.... +...+..++|+|+ +  .|+.+..++.         
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-S--EEEEEECCCC--------C
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-C--EEEEEEecCcccccccccC
Confidence            67889999999999988764     369999999988754321 2222367899998 4  5655555443         


Q ss_pred             -----EEEEEccCCeE--EEEEEcC--CCCeEEEEEeCCCCeEEEeecCC-----eEEEEECcCC--ceeeeeeecccCC
Q 016457          106 -----IRAWDTRSFHE--VWSVTAG--SQEIFCFSFGGSTDYLLAAGCGS-----QIQFWDWRNK--KQVACLEESHVED  169 (389)
Q Consensus       106 -----i~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~~~~~~~~~~~~~  169 (389)
                           |.+|++.++..  ...+...  ...+..+.|+|+++.++..+.++     .|++||+.++  +....+. .+...
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~  318 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDLKA  318 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCCCc
Confidence                 88999877652  2333332  23588999999999988877643     8999999876  3145555 34444


Q ss_pred             eeEEEEecCCCCeEEEEeC----CCcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          170 VTQVHFVPNNQNKVVSASV----DGLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      +.... .|++. .|+..+.    ++.|.+||+.++.   .....+ ..+...+..+.+.  ++.++++...|+..+||.+
T Consensus       319 ~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          319 QWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGST---PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSS---CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEE
T ss_pred             eEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCc---cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEE
Confidence            55543 47885 6766665    3459999987531   112223 2334456677776  4567888888987776654


Q ss_pred             C-CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe--cCCceEEEEEeccCCc
Q 016457          245 K-DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG--TGAGTVGYFPVNYGGA  305 (389)
Q Consensus       245 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g--~~dg~i~i~~~~~~~~  305 (389)
                      . +++....+...           +...+..+.++|+++.+++...  ...+.|++||+.+++.
T Consensus       392 ~~~g~~~~~l~~~-----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          392 DLDGKPAGAVSLP-----------GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ETTSCEEEECBCS-----------SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eCCCCceeeccCC-----------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 35555555421           2367888999999886544333  3458899999987654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.66  E-value=2.3e-13  Score=116.07  Aligned_cols=244  Identities=9%  Similarity=0.016  Sum_probs=159.8

Q ss_pred             CCcEEEEEEeCCCCCCEEEE-------EecCCeEEEEEccCCeEEEEEEc-----CCCCeEEEEEeCCCCeEEEeecCCe
Q 016457           80 SSTVNQISFSGPSTPHVLHS-------CSSDGTIRAWDTRSFHEVWSVTA-----GSQEIFCFSFGGSTDYLLAAGCGSQ  147 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~  147 (389)
                      -....+++|.+++  .++++       +..++.|.+||..+++... +..     +...+.+++++++++.+++++..+.
T Consensus        17 ~~~~~~~~~~~~g--~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNG--DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CTTCEEEEECTTS--CEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CCCccCceECCCC--CEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            3456789999888  57777       5778899999988776543 322     3467899999977466666666568


Q ss_pred             EEEEECcCCceeee-eee---cccCCeeEEEEecCCCCeEEEEeCC---------------CcEEEEecCCCCCCCccce
Q 016457          148 IQFWDWRNKKQVAC-LEE---SHVEDVTQVHFVPNNQNKVVSASVD---------------GLICTFDTGGDINDDDLLE  208 (389)
Q Consensus       148 i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~  208 (389)
                      |.+||.. ++.... ...   .....+.++++++++. ++++...+               +.|..||.. +.     ..
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~~  165 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-----MI  165 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-----EE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CC-----EE
Confidence            9999988 654332 210   1124588999999985 77766554               567777765 21     22


Q ss_pred             eeeccCCceeeEEEe----cCCCcEEEEEecCCcEEEEEcC-CCcee--EEeecccccccCCccCCCC-CceeeecccCC
Q 016457          209 SVINVGTSVGKVGFF----GETNKHLWCLTHIETLSIWDWK-DGQNV--ASFENARSLASDSWTLDDV-DYFVDCHYPGE  280 (389)
Q Consensus       209 ~~~~~~~~i~~~~~~----~~~~~~l~~~~~d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~  280 (389)
                      ...........++++    +....++++...++.|.+|++. +++..  ..+....         .+. .....++++++
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---------~~~~~~p~~i~~d~~  236 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP---------GTHEGGADGMDFDED  236 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC---------CCSSCEEEEEEEBTT
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC---------CCCCCCCCceEECCC
Confidence            222333455778887    5432334444567899999976 44321  1111100         022 45678999999


Q ss_pred             CCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee-EEEecCCCeEEEEecc
Q 016457          281 GENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-GWTGGEDGRLCCWLSD  359 (389)
Q Consensus       281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-l~s~~~dg~v~iW~~~  359 (389)
                      |.  +.++...++.|.+|+..+++.      +..+. .+...+.++         +|+++|++ +++...++.|..|+++
T Consensus       237 G~--l~v~~~~~~~i~~~d~~~g~~------~~~~~-~~~~~~~~i---------~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          237 NN--LLVANWGSSHIEVFGPDGGQP------KMRIR-CPFEKPSNL---------HFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CC--EEEEEETTTEEEEECTTCBSC------SEEEE-CSSSCEEEE---------EECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CC--EEEEEcCCCEEEEEcCCCCcE------eEEEe-CCCCCceeE---------EECCCCCEEEEEeCCCCeEEEEeCC
Confidence            87  566666778899999886654      34443 455667788         89999984 4555667899999987


Q ss_pred             CC
Q 016457          360 DS  361 (389)
Q Consensus       360 ~~  361 (389)
                      ..
T Consensus       299 ~~  300 (314)
T 1pjx_A          299 RN  300 (314)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.64  E-value=1.4e-12  Score=115.17  Aligned_cols=251  Identities=7%  Similarity=-0.029  Sum_probs=165.1

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC--eEEEEECcCCce
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS--QIQFWDWRNKKQ  158 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~  158 (389)
                      .....|+|.+++  +++++...++.|+.||..++.......... ... ++|+|+++.++++..++  .|.++|...+..
T Consensus       131 ~~P~~la~d~~g--~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNN--TVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTT--EEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCC--CEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            457899999988  677777777899999998877766555533 333 99999999888888755  899999876654


Q ss_pred             eeee---eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee--eeccCCce-e-eEEEecCCCcEEE
Q 016457          159 VACL---EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES--VINVGTSV-G-KVGFFGETNKHLW  231 (389)
Q Consensus       159 ~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~i-~-~~~~~~~~~~~l~  231 (389)
                      ...+   .......+.+++++|++. .|+.+..++.|+.||..++.  ......  .......- . .++|+|.++.+++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            3333   111446678999999554 55557778899999998542  011100  11111111 3 8999954677777


Q ss_pred             EEecCCcEEEEEcCCCceeEEeeccccccc---CCccCCCCCceeeecccCCCCeEEEEEec-CCceEEEEEeccCCccc
Q 016457          232 CLTHIETLSIWDWKDGQNVASFENARSLAS---DSWTLDDVDYFVDCHYPGEGENLWVIGGT-GAGTVGYFPVNYGGAAT  307 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~~g~-~dg~i~i~~~~~~~~~~  307 (389)
                      +...++.|+.|+....  +..+.+......   ..-....-.....++++++|+  ++++-. .++.|+.|++.++..  
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~--lyvad~~~~~~I~~~~~~~G~v--  357 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN--FYIVDGFKGYCLRKLDILDGYV--  357 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--EEEEETTTTCEEEEEETTTTEE--
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--EEEEeCCCCCEEEEEECCCCEE--
Confidence            7777889999987643  333332110000   000000124478899999998  667777 889999999776654  


Q ss_pred             cCCCeEEEecccc---------------eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          308 IGPPEAVLVGGHT---------------AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       308 ~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                           ..+. ++.               .....+         +++++|.++++-..++.|+.+.++
T Consensus       358 -----~~~~-g~~~~~g~~~g~~~~~~~~~P~gi---------avd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 -----STVA-GQVDVASQIDGTPLEATFNYPYDI---------CYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             -----EEEE-ECTTCBSCCCBSTTTCCBSSEEEE---------EECSSSEEEEEESTTCEEEEEEEC
T ss_pred             -----EEEe-CCCCCCCcCCCChhceEeCCceEE---------EEcCCCCEEEEECCCCeEEEEEeC
Confidence                 3333 331               123334         899999999998889999988763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=1.2e-12  Score=110.78  Aligned_cols=231  Identities=11%  Similarity=0.021  Sum_probs=152.5

Q ss_pred             ceEEEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           40 YVFEIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        40 ~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      -.-+..|++++ .++++...++.|..||..+++. ..+. ....+.++++.+++  +++++ . ++.|.+||..+++...
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG--~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG--GYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS--SEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC--CEEEE-E-CCeEEEEECCCCcEEE
Confidence            34478899965 4566666688999999987754 3333 45679999999998  54444 4 5679999998877544


Q ss_pred             EEEcC----CCCeEEEEEeCCCCeEEEeecC---------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          119 SVTAG----SQEIFCFSFGGSTDYLLAAGCG---------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       119 ~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      .....    ...+..++++|++..+++....         ..-.+|.+.....+..+. ......+.++|+|+++.++++
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCEEEEe
Confidence            33321    2357889999888755543221         223444443222222233 244557899999999634566


Q ss_pred             EeCCCcEEEEecC--CCCCC-CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC
Q 016457          186 ASVDGLICTFDTG--GDIND-DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD  262 (389)
Q Consensus       186 ~~~d~~i~i~d~~--~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  262 (389)
                      .+.++.|.+||+.  ++... ......+......+..+++. +++.+.++....+.|..||..+++.+..+..       
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-------  238 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-------  238 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEEEEC-------
T ss_pred             cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-------
Confidence            6678899999974  22100 01111222234567889998 6777777777778899999998998888765       


Q ss_pred             CccCCCCCceeeeccc-CCCCeEEEEEec
Q 016457          263 SWTLDDVDYFVDCHYP-GEGENLWVIGGT  290 (389)
Q Consensus       263 ~~~~~~~~~i~~~~~~-~~~~~~~l~~g~  290 (389)
                           +...+++++|. |+++.+|+.++.
T Consensus       239 -----p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          239 -----PVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             -----SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             -----CCCCceEEEEeCCCCCEEEEEcCC
Confidence                 33678999998 888877666653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.62  E-value=2.3e-13  Score=117.45  Aligned_cols=239  Identities=13%  Similarity=0.052  Sum_probs=157.4

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCce---------eee-eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ---------YSG-ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---------~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ..++.+++++...++++|+.+ .+.+|+++..+         ... ....+.. |+.++|  ++  .+|+++ .++.|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG--DQVLVS-TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET--TEEEEE-ESSEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC--CEEEEE-cCCcEEE
Confidence            468999999999999999976 46679865433         111 1223566 999999  66  688888 8899999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      ||+.+.........+...+.++.+.+.  .++++..||.|.+||+.++....     +...|+|++|+|+|   ++.|..
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG---~~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ---LAVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE---EEEEET
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc---eEEEEc
Confidence            999877766667777788988887644  48888899999999999777643     34579999999998   577889


Q ss_pred             CCcEEEEecCCCCCCCccceee------e---ccCCceeeEEEecCCCcEEEEEecCC-----------cEEEEEcCCCc
Q 016457          189 DGLICTFDTGGDINDDDLLESV------I---NVGTSVGKVGFFGETNKHLWCLTHIE-----------TLSIWDWKDGQ  248 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~  248 (389)
                      ||.+++|+..+....  ....+      .   ++...|.++.|. +++.++++-....           .++|.....+.
T Consensus       181 dg~i~~~~~~~~~~~--~k~~I~~Pp~~~~~~~~~~~V~sI~wl-~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~  257 (388)
T 1xip_A          181 DRSFQSFAWRNGEME--KQFEFSLPSELEELPVEEYSPLSVTIL-SPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS  257 (388)
T ss_dssp             TSCEEEEEEETTEEE--EEEEECCCHHHHTSCTTTSEEEEEEES-SSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred             CCcEEEEcCCCcccc--ccceecCCcccccccCCCeeEEEEEEe-cCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence            999999988743200  01112      1   367889999999 6777777643311           35555532222


Q ss_pred             eeEEeecccccc--cCCccCCC-CCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          249 NVASFENARSLA--SDSWTLDD-VDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       249 ~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                        .+|.....+.  -......+ -....=-.|.|+.+.++|++.+..-.|-+++
T Consensus       258 --~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~  309 (388)
T 1xip_A          258 --ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWD  309 (388)
T ss_dssp             --EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred             --ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEec
Confidence              1221110100  00000011 1122223577777777677766666666664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=5.6e-13  Score=116.64  Aligned_cols=261  Identities=10%  Similarity=0.045  Sum_probs=177.0

Q ss_pred             CeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEe----------cCCeEEEEeCCCceeeeeecCC-------C
Q 016457           21 NSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSL----------STNVVKLYSPVTGQYSGECKGH-------S   80 (389)
Q Consensus        21 ~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~-------~   80 (389)
                      +.|.++|..  +.+.++.. ..+  .++++||++.|+++.          .++.|.++|..+++.+..+.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            789999976  45555554 444  899999999998886          3678999999999888776421       1


Q ss_pred             CcEEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCc
Q 016457           81 STVNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      .....+.|+|++  ++++.+..  ++.|.+.|+.+++.+..+.....    ....|.+ ..+++.+.||.+.+.++.+++
T Consensus       177 ~~P~~~~~spDG--k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          177 TYQWMNALTPDN--KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             CCGGGSEECTTS--SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             CCcceEEEcCCC--CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence            335678999999  68887764  57899999999999998886421    2233333 455666668888888886555


Q ss_pred             eeee----eeecccCC-eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-----c---cCCceeeEEEec
Q 016457          158 QVAC----LEESHVED-VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-----N---VGTSVGKVGFFG  224 (389)
Q Consensus       158 ~~~~----~~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~---~~~~i~~~~~~~  224 (389)
                      ....    +. ....+ ...+.+.+++. .++..+..+.|.+.|+.+............     .   .......++++ 
T Consensus       251 v~~~~~~~~~-v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s-  327 (426)
T 3c75_H          251 TKVTNTEVFH-TEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH-  327 (426)
T ss_dssp             CEEEECCCCS-CTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE-
T ss_pred             EEEEeeeeec-cCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc-
Confidence            4421    21 11112 12456788886 666667789999999974321000000000     0   11122346888 


Q ss_pred             CCCcEEEEEec----------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCce
Q 016457          225 ETNKHLWCLTH----------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGT  294 (389)
Q Consensus       225 ~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~  294 (389)
                      +++..+++...          .+.|.++|+.+.+.+..+...             .....+.|+|+|+.+++++...++.
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-------------~~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-------------HEIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-------------EEECEEEECCSSSCEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-------------CCcCeEEEccCCCEEEEEEcCCCCe
Confidence            45555555432          357999999999999988753             3578899999998334455556899


Q ss_pred             EEEEEeccCCc
Q 016457          295 VGYFPVNYGGA  305 (389)
Q Consensus       295 i~i~~~~~~~~  305 (389)
                      |.++|..+.+.
T Consensus       395 VsVID~~t~kv  405 (426)
T 3c75_H          395 LHIYDAATGEE  405 (426)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCCE
Confidence            99999999876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=3e-11  Score=102.13  Aligned_cols=255  Identities=8%  Similarity=-0.043  Sum_probs=165.3

Q ss_pred             CCeEEEEecCceeeeeec---CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee-eecCCCCcEEEEEEeCCCCCC
Q 016457           20 VNSIKRFGLKNSIQTNFG---DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG-ECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        20 ~~~i~~w~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      ++.|..|+....+..+..   ...+.++++.+++.+.++...++.|..||.. ++... .+......+.++++.+++  .
T Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g--~  116 (300)
T 2qc5_A           40 ANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG--D  116 (300)
T ss_dssp             TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT--C
T ss_pred             CCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC--C
Confidence            456666665533333221   3678999999999877766667899999987 55432 222234678999999888  5


Q ss_pred             EEEEEecCCeEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      ++++...++.|..+|.. ++.... +......+.++++.+++..+++...++.|..+|. +++........+...+..++
T Consensus       117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~  194 (300)
T 2qc5_A          117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGIT  194 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEE
Confidence            77776667889999987 554422 2223467899999987774444444789999998 55543321112345688999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      +.+++. ++++....+.|.+||.. +.   ............+..+++. +++.++++...++.|..|+. +++.. .+.
T Consensus       195 ~d~~g~-l~v~~~~~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~  266 (300)
T 2qc5_A          195 SGNDGA-LWFVEIMGNKIGRITTT-GE---ISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITN-DNTIQ-EYQ  266 (300)
T ss_dssp             ECTTSS-EEEEETTTTEEEEECTT-CC---EEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECT-TSCEE-EEE
T ss_pred             ECCCCC-EEEEccCCCEEEEEcCC-Cc---EEEEECCCCCCCceEEEEC-CCCCEEEeccCCCeEEEECC-CCcEE-EEE
Confidence            999884 77766667789999984 21   0111112234567889998 56776665556789999998 44333 332


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ...          ....+.+++++++|.  +.++.. . .|..++..
T Consensus       267 ~~~----------~~~~~~~i~~~~~g~--l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          267 LQT----------ENAEPHGITFGKDGS--VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCS----------TTCCCCCEEECTTSC--EEEECS-S-EEEEEEEC
T ss_pred             CCc----------cCCccceeEeCCCCC--EEEEcc-C-ceEEeCCC
Confidence            211          225578889999886  444444 4 67766653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=1.6e-11  Score=105.16  Aligned_cols=225  Identities=9%  Similarity=-0.037  Sum_probs=145.5

Q ss_pred             eEEEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           41 VFEIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        41 v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      ..+.+|+|++ .++++...++.|..||..+++.. .+. ....+.+++|.+++  .++++ +.+ .|.+||..+++....
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg--~l~v~-~~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS--KQLIA-SDD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT--EEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC--eEEEE-ECC-CEEEEECCCCcEEEE
Confidence            4577899975 45666666889999999877543 233 34679999999998  45554 444 499999988775433


Q ss_pred             EEcC----CCCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC
Q 016457          120 VTAG----SQEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD  189 (389)
Q Consensus       120 ~~~~----~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  189 (389)
                      ....    ...+.+++++|++..+++...      .+.|..+|  +++. ..+. ........++|+|+++.++++.+.+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLF-ADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEE-EEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEee-CCCcccCCeEEcCCCCEEEEEECCC
Confidence            2211    235889999988875554432      24566666  4443 3333 2334578899999996334555567


Q ss_pred             CcEEEEecC--CC-CCCC-ccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          190 GLICTFDTG--GD-INDD-DLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       190 ~~i~i~d~~--~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      +.|.+||+.  ++ .... .....+......+..+++. +++.+.++...++.|.+||. +++.+..+..          
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~----------  268 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGNHIARYEV----------  268 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCCEEEEEEC----------
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-CCCEEEEEEC----------
Confidence            899999986  33 2111 1111111233456788888 66776666666789999998 5777666654          


Q ss_pred             CCCCCceeeeccc-CCCCeEEEEEe
Q 016457          266 LDDVDYFVDCHYP-GEGENLWVIGG  289 (389)
Q Consensus       266 ~~~~~~i~~~~~~-~~~~~~~l~~g  289 (389)
                        +...+.+++|+ ++++.+|+.+.
T Consensus       269 --~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          269 --PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             --SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             --CCCCcEEEEEecCCCCEEEEEec
Confidence              33568999998 88876554443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.56  E-value=4.7e-11  Score=104.57  Aligned_cols=259  Identities=11%  Similarity=0.064  Sum_probs=165.9

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe-
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI-  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-  127 (389)
                      ++..+++++.++.|..+|..+|+.+..+............. ++   .++.++.++.|..+|..+++.+..+....... 
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence            45578888889999999999999887766443222222232 33   78888899999999999999998887642221 


Q ss_pred             ----EEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC---------e-eEEEEecCCCCeEEEEeCCCcEE
Q 016457          128 ----FCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED---------V-TQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       128 ----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                          .....  .++.+++++.++.|..+|.++++.+..........         + ......  + ..++.++.++.+.
T Consensus       178 ~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~  252 (376)
T 3q7m_A          178 LRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGNLT  252 (376)
T ss_dssp             -CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T-TEEEEECTTSCEE
T ss_pred             ecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcEEE
Confidence                22223  25678888889999999999999887765111100         1 111121  3 3788888899999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      .+|..++.    .+-...  ......+...   +..+++++.++.|..+|..+++.+.......           ...+.
T Consensus       253 ~~d~~tG~----~~w~~~--~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------~~~~~  312 (376)
T 3q7m_A          253 ALDLRSGQ----IMWKRE--LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-----------HRLLT  312 (376)
T ss_dssp             EEETTTCC----EEEEEC--CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTTT-----------TSCCC
T ss_pred             EEECCCCc----EEeecc--CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeecccC-----------CCccc
Confidence            99998663    121111  1223344443   4478888899999999999998876655211           11122


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRL  353 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v  353 (389)
                      .....  +.  .|+.++.+|.|+++|..+++.      +.... .....+...         .. ..+..|+.++.||.|
T Consensus       313 ~~~~~--~~--~l~v~~~~g~l~~~d~~tG~~------~~~~~-~~~~~~~~~---------~~-~~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          313 SPVLY--NG--NLVVGDSEGYLHWINVEDGRF------VAQQK-VDSSGFQTE---------PV-AADGKLLIQAKDGTV  371 (376)
T ss_dssp             CCEEE--TT--EEEEECTTSEEEEEETTTCCE------EEEEE-CCTTCBCSC---------CE-EETTEEEEEBTTSCE
T ss_pred             CCEEE--CC--EEEEEeCCCeEEEEECCCCcE------EEEEe-cCCCcceeC---------CE-EECCEEEEEeCCCEE
Confidence            22222  34  567788899999999998876      44443 212222221         11 123456778889999


Q ss_pred             EEEe
Q 016457          354 CCWL  357 (389)
Q Consensus       354 ~iW~  357 (389)
                      ..|+
T Consensus       372 ~~~~  375 (376)
T 3q7m_A          372 YSIT  375 (376)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.54  E-value=4.6e-12  Score=118.94  Aligned_cols=278  Identities=12%  Similarity=0.063  Sum_probs=180.7

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCC-C----CcEEE-EEEeCCCCCCEEEEEec------CCeEEEEEccCCeE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGH-S----STVNQ-ISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHE  116 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~----~~v~~-i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~  116 (389)
                      ++..|++++.|+.|..+|..+|+.+..+..+ .    ..+.. .... ++   .++.++.      ++.|+.+|..+++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~---~v~v~~~~~~~~~~g~v~a~D~~tG~~  202 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG---KVIIGNGGAEYGVRGYITAYDAETGER  202 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT---EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CC---EEEEEecccccCCCCEEEEEECCCCcE
Confidence            4568888888999999999999998887654 1    11211 1121 33   5555543      79999999999999


Q ss_pred             EEEEEcCCCC--------------------------------eEEEEEeCCCCeEEEeecCC------------------
Q 016457          117 VWSVTAGSQE--------------------------------IFCFSFGGSTDYLLAAGCGS------------------  146 (389)
Q Consensus       117 ~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~d~------------------  146 (389)
                      +..+......                                ...++++|.++.++++..++                  
T Consensus       203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence            9988754211                                12578888888888877653                  


Q ss_pred             -eEEEEECcCCceeeeeeeccc--------CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCCCCccc-------e
Q 016457          147 -QIQFWDWRNKKQVACLEESHV--------EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDINDDDLL-------E  208 (389)
Q Consensus       147 -~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~  208 (389)
                       .|..+|.++++.+..++..+.        .....+....+|+  ..++.++.+|.++++|..+++......       .
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             599999999999887762221        1222333334552  278999999999999999774210000       0


Q ss_pred             eeeccCCc------------------------eeeEEEecCCCcEEEEEec-----------------------------
Q 016457          209 SVINVGTS------------------------VGKVGFFGETNKHLWCLTH-----------------------------  235 (389)
Q Consensus       209 ~~~~~~~~------------------------i~~~~~~~~~~~~l~~~~~-----------------------------  235 (389)
                      .+.....+                        -..++++ ++..++++...                             
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d-p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN-PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE-TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc-CCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence            00000000                        1257788 45556665443                             


Q ss_pred             --------------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          236 --------------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       236 --------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                                    .+.|..||+.+++.+-.+...             ..+....+...+.  +++.++.||.+++||..
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-------------~~~~~g~~~~~g~--~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-------------SPWNGGTLTTAGN--VVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-------------SSCCCCEEEETTT--EEEEECTTSEEEEEETT
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCCC-------------CCCcCcceEeCCC--EEEEECCCCcEEEEECC
Confidence                          268999999999988777532             3344455666677  66778999999999999


Q ss_pred             cCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee-EEEecC----------------CCeEEEEeccCC
Q 016457          302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-GWTGGE----------------DGRLCCWLSDDS  361 (389)
Q Consensus       302 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-l~s~~~----------------dg~v~iW~~~~~  361 (389)
                      +++.      +..+..++.....-+         .|..+|+. ++..+.                .+.+..|.+...
T Consensus       507 tG~~------lw~~~~~~~~~~~p~---------~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~  568 (677)
T 1kb0_A          507 TGEK------LWEAPTGTGVVAAPS---------TYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK  568 (677)
T ss_dssp             TCCE------EEEEECSSCCCSCCE---------EEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred             CCce------eeeeeCCCCcccCCE---------EEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence            9887      666654433222333         56677764 333221                468899998843

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=3.1e-12  Score=121.02  Aligned_cols=243  Identities=12%  Similarity=0.060  Sum_probs=156.4

Q ss_pred             ceEEEeecCCCCeEEEEec-----CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC----------
Q 016457           40 YVFEIVPKNDWSLMAVSLS-----TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG----------  104 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----------  104 (389)
                      .+..++|||||++||.+.+     ...|++||+.+|+.+.... +......++|+ |+  +.|+.+..+.          
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg--~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN--EGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT--TEEEEEESSCCC-------C
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC--CEEEEEEecCcccccccccC
Confidence            5788899999999986543     2479999999998654311 11113578999 98  6788777764          


Q ss_pred             ---eEEEEEccCCeE--EEEEEc---CCCCeEEEEEeCCCCeEEEeec----CCeEEEEECcCCc-eeeeeeecccCCee
Q 016457          105 ---TIRAWDTRSFHE--VWSVTA---GSQEIFCFSFGGSTDYLLAAGC----GSQIQFWDWRNKK-QVACLEESHVEDVT  171 (389)
Q Consensus       105 ---~i~iwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~~~~~~~v~  171 (389)
                         .|.+|++.++..  ...+..   +...+.++.|+|++++++....    .+.|+++|+.++. ....+. .+.....
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~  284 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLDADV  284 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSSSCE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCCceE
Confidence               399999876542  223332   3345788999999998876554    3589999998764 345555 4555555


Q ss_pred             EEEEecCCCCeEEEEeCC---CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCC--cEEEEEcC
Q 016457          172 QVHFVPNNQNKVVSASVD---GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIE--TLSIWDWK  245 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~  245 (389)
                      .. +++++..+++....+   +.|..+|+.++.  ......+..+...+.  .|+ ++++.|+... .++  .|++|++.
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~--~~s-~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--PAHWRDLIPERQQVL--TVH-SGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCSSCE--EEE-EETTEEEEEEEETTEEEEEEECTT
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--ccccEEEecCCCCEE--EEE-EECCEEEEEEEECCeeEEEEEECC
Confidence            54 566665355555443   579999998542  112234455555544  677 4455555544 454  78899987


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC--CceEEEEEeccCCc
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG--AGTVGYFPVNYGGA  305 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~--dg~i~i~~~~~~~~  305 (389)
                      .+ ....+...           ....+..+.++++++.+++...+.  -+.|+.||+.+++.
T Consensus       359 g~-~~~~l~~p-----------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          359 GK-RVREVALP-----------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             SC-EEEEECCS-----------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CC-eeEEeecC-----------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            44 34443321           335677888889888655443332  27899999887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.52  E-value=2.1e-12  Score=111.18  Aligned_cols=263  Identities=10%  Similarity=0.034  Sum_probs=169.5

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cCCeEEEEEccCCeEEEEEEcCC------
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SDGTIRAWDTRSFHEVWSVTAGS------  124 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~------  124 (389)
                      .|.++|..+++.+..+..-..+  .+.++|++  +.++++.          .++.|.+||+.+++.+.++..+.      
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg--~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG--SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTS--SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCC--CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            8899999999999998765556  79999999  5666665          46889999999999999987541      


Q ss_pred             -CCeEEEEEeCCCCeEEEeec--CCeEEE--EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          125 -QEIFCFSFGGSTDYLLAAGC--GSQIQF--WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       125 -~~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                       .....++++|++++++++..  +..|.+  +|+.+   +.++..  ...   +.+.|++...+++.+.|+.+.+.|+.+
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v--~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS--ASC---FHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC--SSC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC--CCc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence             34568999999999999875  467888  99887   455541  111   224466655777778899999999885


Q ss_pred             -----CCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc--eeEEeecccc-cccCCccCCCCCc
Q 016457          200 -----DINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ--NVASFENARS-LASDSWTLDDVDY  271 (389)
Q Consensus       200 -----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~  271 (389)
                           +.........+.....+.   . .+. +..++..+. +.+.+.|.....  .+..+..... .....|   ....
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~---~p~g  265 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF---RSAG  265 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCE---E-ETT-TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE---EECS
T ss_pred             ccccCCeEEEEeeeeeeCCCCcc---c-ccc-CCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc---ccCc
Confidence                 210000000011112232   3 434 444555555 899999986532  2222211000 000000   0111


Q ss_pred             eeeecccCCCCeEEEEEe-c-C-----CceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee-
Q 016457          272 FVDCHYPGEGENLWVIGG-T-G-----AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF-  343 (389)
Q Consensus       272 i~~~~~~~~~~~~~l~~g-~-~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~-  343 (389)
                      ...+.++|+++++|++.. . .     ++.+.++|+.+.+.      +..+..+.  ....+         +|++||++ 
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v------v~~i~vg~--~p~gi---------~~s~Dg~~l  328 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------SGPISNGH--DSDAI---------IAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------EECCEEEE--EECEE---------EECCSSSCE
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE------EEEEECCC--CcceE---------EECCCCCEE
Confidence            222679999997766544 2 2     23466999999876      56665332  56777         99999984 


Q ss_pred             EEEec-CCCeEEEEeccCC
Q 016457          344 GWTGG-EDGRLCCWLSDDS  361 (389)
Q Consensus       344 l~s~~-~dg~v~iW~~~~~  361 (389)
                      +++.. .++.|.++|+...
T Consensus       329 ~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEEETTTTEEEEEESSSC
T ss_pred             EEEccCCCCeEEEEECCCC
Confidence            56665 5999999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=6e-11  Score=100.24  Aligned_cols=231  Identities=10%  Similarity=0.057  Sum_probs=147.7

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                      ...--.+..|++++. .++++...++.|..||..+++. ..+.. ...+.++++++++. ++++. ++.|.+||..+++.
T Consensus        11 ~~~~~Egp~w~~~~~-~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSN-SLLFVDIPAKKVCRWDSFTKQV-QRVTM-DAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCE-EEEEC-SSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCC-EEEEEECCCCEEEEEECCCCcE-EEEeC-CCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcE
Confidence            334556889998652 5677777789999999987765 33443 47899999998887 44444 57899999987764


Q ss_pred             eeeeeec---ccCCeeEEEEecCCCCeEEEEeCC---------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          159 VACLEES---HVEDVTQVHFVPNNQNKVVSASVD---------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       159 ~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      .......   ....++.++++|+|. ++++....         ..-.+|.+...    ...............++|+ ++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~~~~~~~~~~pngi~~s-pd  159 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD----HHVKKYFDQVDISNGLDWS-LD  159 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT----SCEEEEEEEESBEEEEEEC-TT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC----CCEEEEeeccccccceEEc-CC
Confidence            3322200   123478899999995 66554321         22344444321    1122233333456789999 56


Q ss_pred             CcEE-EEEecCCcEEEEEc--CCCcee--EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          227 NKHL-WCLTHIETLSIWDW--KDGQNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       227 ~~~l-~~~~~d~~i~i~d~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++.| ++.+.++.|.+|++  .++...  ..+....         .+......++++++|+  +.++...++.|..||..
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~---------~~~~~p~g~~~d~~G~--lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE---------KEEQIPDGMCIDAEGK--LWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC---------GGGCEEEEEEEBTTSC--EEEEEETTTEEEEECTT
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC---------CCCCCCCeeEECCCCC--EEEEEcCCCEEEEEcCC
Confidence            6655 55666789999997  455432  1121110         0224567899999986  55666667889999998


Q ss_pred             cCCccccCCCeEEEecccceeeeeccCCCcccCCCCC-CCceeEEEe
Q 016457          302 YGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ-SHGIFGWTG  347 (389)
Q Consensus       302 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~~~l~s~  347 (389)
                      +++.      +..+. .+...++++         +|. |+++.|+.+
T Consensus       229 tG~~------~~~i~-~p~~~~t~~---------~f~g~d~~~L~vt  259 (297)
T 3g4e_A          229 TGKR------LQTVK-LPVDKTTSC---------CFGGKNYSEMYVT  259 (297)
T ss_dssp             TCCE------EEEEE-CSSSBEEEE---------EEESGGGCEEEEE
T ss_pred             CceE------EEEEE-CCCCCceEE---------EEeCCCCCEEEEE
Confidence            7775      55555 555677888         887 777655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.51  E-value=2.3e-12  Score=110.97  Aligned_cols=250  Identities=13%  Similarity=0.000  Sum_probs=163.8

Q ss_pred             eEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEe----------cCCeEEEEeCCCceeeeeecCC-------CC
Q 016457           22 SIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSL----------STNVVKLYSPVTGQYSGECKGH-------SS   81 (389)
Q Consensus        22 ~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~-------~~   81 (389)
                      +|.++|..  +.+.++.. ..+  .++++||+++++++.          .++.|.+||+.+++.+..+...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            77888875  45555554 444  799999999999886          3689999999999999887533       12


Q ss_pred             cEEEEEEeCCCCCCEEEEEec--CCeEEE--EEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcC-
Q 016457           82 TVNQISFSGPSTPHVLHSCSS--DGTIRA--WDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRN-  155 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~-  155 (389)
                      ....++++|++  ++++++..  +..|.+  +|+.+   +..+.... .   ..+.|.+.. +++.+.|+.+.+.|+.+ 
T Consensus       125 ~P~~ia~SpDG--k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~  195 (368)
T 1mda_H          125 RVHIIGNCASS--ACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             CTTSEEECTTS--SCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred             CcceEEEcCCC--CEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence            35689999999  67777764  467888  99877   55555321 1   122344444 44455588888899886 


Q ss_pred             ----Cceee----eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-------cc---CCce
Q 016457          156 ----KKQVA----CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-------NV---GTSV  217 (389)
Q Consensus       156 ----~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~---~~~i  217 (389)
                          ++...    .+. -...+.   . .+++. .++..+. +.+.+.|+.+...  ..+..+.       ..   ....
T Consensus       196 ~~~~~~v~~~~t~~i~-vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          196 PAAAGIVGAQCTGAQN-CSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGA--TMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             CCCCEECCCCSCTTSC-BCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCC--EEECCCCSSCTHHHHTTEEECSS
T ss_pred             cccCCeEEEEeeeeee-CCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcc--eEEEEEEeccccccccccccCcc
Confidence                44331    121 112333   3 66664 6666666 9999999974311  1111110       00   1112


Q ss_pred             eeEEEecCCCcEEEEEec---------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          218 GKVGFFGETNKHLWCLTH---------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      ..++++ ++++.++++..         ++.+.++|+.+.+.+..+...             .....+.|+|+|+.+|++.
T Consensus       267 ~~v~~s-~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-------------~~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          267 QMVAKL-KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-------------HDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             SCEEEE-TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-------------EEECEEEECCSSSCEEEEE
T ss_pred             eeeEEc-CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-------------CCcceEEECCCCCEEEEEc
Confidence            226788 56666665432         235669999999998888753             3578899999998654444


Q ss_pred             ecCCceEEEEEeccCCc
Q 016457          289 GTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       289 g~~dg~i~i~~~~~~~~  305 (389)
                      ...++.|.++|+.+.+.
T Consensus       333 ~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          333 SAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             ETTTTEEEEEESSSCEE
T ss_pred             cCCCCeEEEEECCCCcE
Confidence            43689999999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.50  E-value=1.1e-11  Score=116.35  Aligned_cols=284  Identities=12%  Similarity=0.032  Sum_probs=180.2

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCc-----------EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST-----------VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      +..|++++.++.|.-+|..+|+.+..+......           ...+++.  +  ..|+.++.|+.|..+|..+++.+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~--~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K--GKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--C--CEEEEEcCCCEEEEEECCCCCEEe
Confidence            457777887899999999999998877543210           1223332  3  478888999999999999999999


Q ss_pred             EEEcC-C----CCeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeeccc-------------------
Q 016457          119 SVTAG-S----QEIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHV-------------------  167 (389)
Q Consensus       119 ~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~-------------------  167 (389)
                      .+..+ .    ..+.+ ...  .++.+++++.      ++.|+.+|.++++.+.++.....                   
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             eecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            98865 2    12221 122  2566776654      68999999999999877752110                   


Q ss_pred             ------------CCeeEEEEecCCCCeEEEEeCCC-------------------cEEEEecCCCCCCCccceeee--ccC
Q 016457          168 ------------EDVTQVHFVPNNQNKVVSASVDG-------------------LICTFDTGGDINDDDLLESVI--NVG  214 (389)
Q Consensus       168 ------------~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~~  214 (389)
                                  .....++++|++. +++.++.++                   .|..+|.++++    .+-.+.  .+.
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~----~~W~~~~~~~d  305 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK----YKWHYQETPGD  305 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESSTTC
T ss_pred             ccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC----EEEEEecCCCc
Confidence                        0113578899885 888877664                   49999998764    121111  111


Q ss_pred             -------CceeeEEEecCCC---cEEEEEecCCcEEEEEcCCCceeEEeecccccc------cCC--------------c
Q 016457          215 -------TSVGKVGFFGETN---KHLWCLTHIETLSIWDWKDGQNVASFENARSLA------SDS--------------W  264 (389)
Q Consensus       215 -------~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~--------------~  264 (389)
                             ....-+... .++   ..++.++.+|.++++|..+++.+..+......-      ...              +
T Consensus       306 ~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          306 NWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD  384 (677)
T ss_dssp             CSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred             ccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence                   111112222 245   678999999999999999999887765321000      000              0


Q ss_pred             c----CCCCCceeeecccCCCCeEEEEEec-----------------------------------------CCceEEEEE
Q 016457          265 T----LDDVDYFVDCHYPGEGENLWVIGGT-----------------------------------------GAGTVGYFP  299 (389)
Q Consensus       265 ~----~~~~~~i~~~~~~~~~~~~~l~~g~-----------------------------------------~dg~i~i~~  299 (389)
                      .    .+. ..-..++++|++..+|+.+..                                         ..|.|..||
T Consensus       385 ~~P~~~G~-~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          385 AVPGPYGA-HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             CSSCTTCS-SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             ECcCcccc-cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence            0    000 001256788888744433221                                         127899999


Q ss_pred             eccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcc
Q 016457          300 VNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~  363 (389)
                      +.+++.      +..+.  +..++...         .++.++..++.++.||.|++||..++..
T Consensus       464 ~~tG~~------~W~~~--~~~~~~~g---------~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          464 PVAQKA------AWSVE--HVSPWNGG---------TLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             TTTTEE------EEEEE--ESSSCCCC---------EEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCcE------EeecC--CCCCCcCc---------ceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            988876      44443  22223333         4556677778889999999999987743

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.50  E-value=1.5e-11  Score=105.55  Aligned_cols=288  Identities=9%  Similarity=0.026  Sum_probs=178.9

Q ss_pred             cCCCCeEEEEecCc-eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           17 CDNVNSIKRFGLKN-SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        17 ~~~~~~i~~w~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ++.++.|..|+... ....... ...+.++...+++. |.+++.+  |..+|. +++.+..+...........+. ++  
T Consensus        36 ~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~--  108 (330)
T 3hxj_A           36 GSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-ED--  108 (330)
T ss_dssp             SSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TT--
T ss_pred             EcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CC--
Confidence            34456677777322 2222222 44456777777774 5555544  888886 677666555433333334444 44  


Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                       .++.++.++.|..+|.. ++.......+...+.++...+ ++.+++++.++.|..+|.. ++.+..+. .....+.++.
T Consensus       109 -~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~  183 (330)
T 3hxj_A          109 -ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAAS  183 (330)
T ss_dssp             -EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCE
T ss_pred             -EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeE
Confidence             78888889999999988 888777776655566677763 5567778888999999998 87777666 4455677788


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      ..+++.  +..++  +.|..+| .++    ............+.++... +++ .|++++.++.|..+|. +++.+..+.
T Consensus       184 ~d~~g~--l~v~t--~~l~~~d-~~g----~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~  251 (330)
T 3hxj_A          184 IGKDGT--IYFGS--DKVYAIN-PDG----TEKWNFYAGYWTVTRPAIS-EDG-TIYVTSLDGHLYAINP-DGTEKWRFK  251 (330)
T ss_dssp             ECTTCC--EEEES--SSEEEEC-TTS----CEEEEECCSSCCCSCCEEC-TTS-CEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             EcCCCE--EEEEe--CEEEEEC-CCC----cEEEEEccCCcceeceEEC-CCC-eEEEEcCCCeEEEECC-CCCEeEEee
Confidence            877763  55555  7899999 433    2222333334567777776 444 5777778888888874 566665554


Q ss_pred             cccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccC
Q 016457          255 NARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  334 (389)
                      ...            ..+..+.+.+++.   |..++.+|.|..+|. +++.      +.... .....+.++        
T Consensus       252 ~~~------------~~~~~~~~~~~g~---l~v~t~~ggl~~~d~-~g~~------~~~~~-~~~~~~~~~--------  300 (330)
T 3hxj_A          252 TGK------------RIESSPVIGNTDT---IYFGSYDGHLYAINP-DGTE------KWNFE-TGSWIIATP--------  300 (330)
T ss_dssp             CSS------------CCCSCCEECTTSC---EEEECTTCEEEEECT-TSCE------EEEEE-CSSCCCSCC--------
T ss_pred             CCC------------CccccceEcCCCe---EEEecCCCCEEEECC-CCcE------EEEEE-cCCccccce--------
Confidence            321            2233445555553   456777888999985 4443      23332 223334444        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       ..+++|.+ ..++.+|.+++...+..
T Consensus       301 -~~d~~g~l-~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          301 -VIDENGTI-YFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -EECTTCCE-EEECTTSCEEEEEC---
T ss_pred             -EEcCCCEE-EEEcCCCeEEEEecccc
Confidence             55566664 66788999999876643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1.4e-12  Score=112.64  Aligned_cols=179  Identities=12%  Similarity=0.149  Sum_probs=131.7

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-----------EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-----------EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      +++.+++++..  .++++|+.++ +.+|++.+.+           ...... +.. |+.++|  ++..|+++ .++.|++
T Consensus        39 ~~nlLais~~~--gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSK--SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTT--TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCC--CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            68999999988  6999999885 6679876433           222333 445 999999  77788777 8899999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      ||+++........ .|...+.++.+.+.   .+++++.||.|.+||+..+.    . .   .+...|.+++|+ ++|  +
T Consensus       111 ~dv~sl~~~~~~~-~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~----~-~---~~~~~Vs~v~WS-pkG--~  175 (388)
T 1xip_A          111 LDLEELSEFRTVT-SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS----T-K---QLAQNVTSFDVT-NSQ--L  175 (388)
T ss_dssp             EESSSTTCEEEEE-ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC----E-E---EEEESEEEEEEC-SSE--E
T ss_pred             EEchhhhccCccc-eeecceeeEEecCC---CEEEEECCCCEEEEEccCCc----c-c---cccCCceEEEEc-CCc--e
Confidence            9998877655555 67778888777654   38888999999999998542    1 1   144689999999 666  7


Q ss_pred             EEEecCCcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          231 WCLTHIETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      +.+..||.+++|+...+..  .+++.....+...   .+|...|.++.|.+++.  ++++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~---~~~~~~V~sI~wl~~~~--flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL---PVEEYSPLSVTILSPQD--FLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS---CTTTSEEEEEEESSSSE--EEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccc---cCCCeeEEEEEEecCCe--EEEE
Confidence            8899999999999887765  5556332211100   01568899999999877  6554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=5.5e-12  Score=119.36  Aligned_cols=243  Identities=11%  Similarity=0.008  Sum_probs=152.9

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEE-----ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC-------
Q 016457           79 HSSTVNQISFSGPSTPHVLHSC-----SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS-------  146 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------  146 (389)
                      |...+..++|+|++  ++|+.+     +....|++||+.+++.+... .+......++|+ +++.|+.+..+.       
T Consensus       127 ~~~~l~~~~~SpDg--~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          127 GTTALDQLSFSRDG--RILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             SCCEEEEEEECTTS--SEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CcEEEEEEEECCCC--CEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            55678899999999  677642     23357999999999865431 111123567899 999999888763       


Q ss_pred             ------eEEEEECcCCce----eeeeeec-ccCCeeEEEEecCCCCeEEEEeC---CCcEEEEecCCCCCCCccceeeec
Q 016457          147 ------QIQFWDWRNKKQ----VACLEES-HVEDVTQVHFVPNNQNKVVSASV---DGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       147 ------~i~iwd~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                            .|++|++.+...    +.... . |...+..+.|+|+++.++++.+.   .+.|+++|+.++.   .....+..
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~l~~  278 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---APLLTVQG  278 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT---CCCEEEEC
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC---CceEEEeC
Confidence                  499999887643    22222 2 34457889999999733344432   2589999998542   12444444


Q ss_pred             cCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      +....... ++++++.+++....+   +.|..+|+.++..  ...+..            |...+.  .|+++++.+ ++
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~------------~~~~~~--~~s~~g~~l-v~  342 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP------------ERQQVL--TVHSGSGYL-FA  342 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC------------CCSSCE--EEEEETTEE-EE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec------------CCCCEE--EEEEECCEE-EE
Confidence            54444444 553555555555544   5799999987654  234443            223444  888988842 33


Q ss_pred             EecCCc--eEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCC----CeEEEEeccCC
Q 016457          288 GGTGAG--TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED----GRLCCWLSDDS  361 (389)
Q Consensus       288 ~g~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~v~iW~~~~~  361 (389)
                      +...++  .|++|++..+..       ..+...+...+..+         .+++++..|+....+    +.|..|++...
T Consensus       343 ~~~~~g~~~l~~~d~~g~~~-------~~l~~p~~~~~~~~---------~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGKRV-------REVALPGLGSVSGF---------NGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEETTEEEEEEECTTSCEE-------EEECCSSSSEEEEC---------CCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEECCeeEEEEEECCCCee-------EEeecCCCceEEee---------ecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            333444  688888875432       44432334556666         778887766554433    78888888654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=2.7e-11  Score=102.77  Aligned_cols=231  Identities=10%  Similarity=0.024  Sum_probs=149.1

Q ss_pred             eeeeec-CcceEEEeecCCCC-eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      +..+.. ........|+|+++ +++++..++.|..|+. +++ ...+..+...+..+++.+++  +++++...++.|.+|
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG--~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ--RLVHCEHGRRAITRS  112 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS--CEEEEETTTTEEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC--CEEEEECCCCEEEEE
Confidence            333433 55667899999998 6667777899999997 454 34455566778999999998  566555556789999


Q ss_pred             EccCCeEEEEEEcC-----CCCeEEEEEeCCCCeEEE----eec-------------CCeEEEEECcCCceeeeeeeccc
Q 016457          110 DTRSFHEVWSVTAG-----SQEIFCFSFGGSTDYLLA----AGC-------------GSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus       110 d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      +.. ++.. .+...     ...+..++++|++..+++    +..             .+.|..+|..+++.....   ..
T Consensus       113 ~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~  187 (305)
T 3dr2_A          113 DAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL  187 (305)
T ss_dssp             CTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred             CCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence            986 5533 22211     234678999988776664    221             256888887666543322   23


Q ss_pred             CCeeEEEEecCCCCeEEEEeCC------CcEEEEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          168 EDVTQVHFVPNNQNKVVSASVD------GLICTFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      .....++|+|++. .|+.+...      +.|.+|++....  ......+ .........+++. ++++ |++++.+ .|.
T Consensus       188 ~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d-~~G~-lwv~~~~-gv~  261 (305)
T 3dr2_A          188 DHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVD-RGGW-LWSSSGT-GVC  261 (305)
T ss_dssp             SSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEEC-TTSC-EEECCSS-EEE
T ss_pred             CCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEEC-CCCC-EEEecCC-cEE
Confidence            4567899999996 66666554      689999987431  0001111 1123445678888 6676 5555544 599


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG  293 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg  293 (389)
                      +|+. +++.+..+...             ..+..++|+++++.+  ..++.++
T Consensus       262 ~~~~-~g~~~~~~~~~-------------~~~~~~~f~~d~~~L--~it~~~~  298 (305)
T 3dr2_A          262 VFDS-DGQLLGHIPTP-------------GTASNCTFDQAQQRL--FITGGPC  298 (305)
T ss_dssp             EECT-TSCEEEEEECS-------------SCCCEEEECTTSCEE--EEEETTE
T ss_pred             EECC-CCCEEEEEECC-------------CceeEEEEeCCCCEE--EEEcCCe
Confidence            9998 57777666542             347889999888844  4444444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.49  E-value=5.3e-11  Score=102.72  Aligned_cols=241  Identities=8%  Similarity=-0.031  Sum_probs=155.4

Q ss_pred             cceEEEeecCCCCeEEEEec--CCeEEEEeCCCceeeeee-------cCCCCcEEEEEEeCCCCCCEEEEEec-----CC
Q 016457           39 DYVFEIVPKNDWSLMAVSLS--TNVVKLYSPVTGQYSGEC-------KGHSSTVNQISFSGPSTPHVLHSCSS-----DG  104 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg  104 (389)
                      ..+..++++++|+++++...  ++.++||.+.+++.. .+       ..|...+..+++.+++  .++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g--~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG--IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS--EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC--cEEEEcCCCCcCCCC
Confidence            57889999999988887642  343555555455533 22       2355689999999988  45554333     57


Q ss_pred             eEEEEEccCCeEEEEEEcC------CCCeEEEEEeCCCCeEEEee----cCCeEEEEECcCCceeeeeeecc--------
Q 016457          105 TIRAWDTRSFHEVWSVTAG------SQEIFCFSFGGSTDYLLAAG----CGSQIQFWDWRNKKQVACLEESH--------  166 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~--------  166 (389)
                      .|.+||+.+++.+..+..+      ...+..++++++++.++++.    .++.|.+||+.+++....+. .|        
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCccccccc
Confidence            8999999999988777653      23568999998766766654    46899999998776554442 21        


Q ss_pred             ---------------------cCCeeEEEEecCCCCeEEEEeCCC-cEEEEecCC---CCCCC-ccc--eeeeccCCcee
Q 016457          167 ---------------------VEDVTQVHFVPNNQNKVVSASVDG-LICTFDTGG---DINDD-DLL--ESVINVGTSVG  218 (389)
Q Consensus       167 ---------------------~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~---~~~~~-~~~--~~~~~~~~~i~  218 (389)
                                           ...+..|+|+|+++ .|+.+..++ .+..++...   +.... ...  ....++.....
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                                 02357899999996 777766555 565555421   00000 000  01223344567


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      .++++ +++.++++...++.|.+||..+++....... .          +.....+++|.+++.  ++++.+..+.+.+|
T Consensus       252 gia~d-~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~----------~~~~p~~va~~~~g~--l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          252 GISID-KDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E----------KLSWTDSFNFGSDGY--LYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEC-TTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G----------GGSCEEEEEECTTSC--EEEEECCGGGSGGG
T ss_pred             eEEEC-CCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C----------ceecCCeeEECCCCc--EEEEeCcccccccc
Confidence            89998 6788888888899999999856654332221 1          225678899998876  44555444444333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.48  E-value=1.2e-10  Score=101.89  Aligned_cols=263  Identities=11%  Similarity=-0.010  Sum_probs=167.9

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCC---------CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGH---------SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      ++..+++++.++.|..+|.++|+.+..+...         ...+.+.....+   ..++.++.++.|..+|..+++.+..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---GHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---CEEEEEcCCCEEEEEECCCCCEEEE
Confidence            3567888888999999999999988766542         122322222223   3788888999999999999999988


Q ss_pred             EEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCe-----eEEEEecCCCCeEEEEeCCCcEEE
Q 016457          120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDV-----TQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       120 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      .............  .++.+++++.++.|..+|.++++.+.... ......     ......  + ..++.++.++.+..
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSA  202 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----CCCCCCEEE--T-TEEEECCTTTEEEE
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEE
Confidence            8765332222233  35688888889999999999999887776 221111     222232  2 27888888999999


Q ss_pred             EecCCCCCCCccceeeeccC--C--------ce-eeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          195 FDTGGDINDDDLLESVINVG--T--------SV-GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~--~--------~i-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      +|..++..    +-......  .        .+ ......   +..+++++.++.+..+|..+++.+.....        
T Consensus       203 ~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--------  267 (376)
T 3q7m_A          203 VLMEQGQM----IWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKREL--------  267 (376)
T ss_dssp             EETTTCCE----EEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred             EECCCCcE----EEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeeccC--------
Confidence            99986631    11111100  0        01 111222   34678888899999999999988766542        


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                            .....+..  ++.  .|..++.++.|..+|..+++.      +..........+...         .  ..+..
T Consensus       268 ------~~~~~~~~--~~~--~l~~~~~~g~l~~~d~~tG~~------~w~~~~~~~~~~~~~---------~--~~~~~  320 (376)
T 3q7m_A          268 ------GSVNDFIV--DGN--RIYLVDQNDRVMALTIDGGVT------LWTQSDLLHRLLTSP---------V--LYNGN  320 (376)
T ss_dssp             ------CCEEEEEE--ETT--EEEEEETTCCEEEEETTTCCE------EEEECTTTTSCCCCC---------E--EETTE
T ss_pred             ------CCCCCceE--ECC--EEEEEcCCCeEEEEECCCCcE------EEeecccCCCcccCC---------E--EECCE
Confidence                  12233333  245  456667789999999998875      333221111111111         1  12345


Q ss_pred             EEEecCCCeEEEEeccCCc
Q 016457          344 GWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       344 l~s~~~dg~v~iW~~~~~~  362 (389)
                      |+.++.+|.|.+++..+..
T Consensus       321 l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          321 LVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEECTTSEEEEEETTTCC
T ss_pred             EEEEeCCCeEEEEECCCCc
Confidence            6788889999999988763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.47  E-value=2.3e-11  Score=114.47  Aligned_cols=262  Identities=12%  Similarity=0.082  Sum_probs=165.9

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCC--CCcEEEEEEeC---CCCCCEEEEEe------cCCeEEEEEccCCeEE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGH--SSTVNQISFSG---PSTPHVLHSCS------SDGTIRAWDTRSFHEV  117 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~~~---~~~~~~l~s~~------~dg~i~iwd~~~~~~~  117 (389)
                      ++..|++++.|+.|..+|..+|+.+..+...  ......+..+|   ++   .++.++      .+|.|..||..+|+.+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g---~v~vg~~~~~~~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG---KVVIGNGGAEFGVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT---EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC---EEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence            3557888989999999999999998776542  11111111111   44   455543      3789999999999999


Q ss_pred             EEEEcCC-C------------------------------CeEEEEEeCCCCeEEEeecCC-------------------e
Q 016457          118 WSVTAGS-Q------------------------------EIFCFSFGGSTDYLLAAGCGS-------------------Q  147 (389)
Q Consensus       118 ~~~~~~~-~------------------------------~v~~~~~~~~~~~l~~~~~d~-------------------~  147 (389)
                      ..+.... .                              ....++++|..+.++++..++                   .
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            8887310 0                              012578888888888887765                   3


Q ss_pred             EEEEECcCCceeeeeeec-cc-------CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCCCCc----c---ceee
Q 016457          148 IQFWDWRNKKQVACLEES-HV-------EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDINDDD----L---LESV  210 (389)
Q Consensus       148 i~iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~----~---~~~~  210 (389)
                      |..+|.++++.+..+... |.       .++.......++.  ..++.++.+|.++++|.++++....    .   ...+
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence            999999999999887622 21       1122222222331  2688899999999999998752100    0   0000


Q ss_pred             e-----------------ccC-----------CceeeEEEecCCCcEEEEEec---------------------------
Q 016457          211 I-----------------NVG-----------TSVGKVGFFGETNKHLWCLTH---------------------------  235 (389)
Q Consensus       211 ~-----------------~~~-----------~~i~~~~~~~~~~~~l~~~~~---------------------------  235 (389)
                      .                 ...           ..-..++++| +..++++...                           
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence            0                 000           0112377884 4445555422                           


Q ss_pred             ------------------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          236 ------------------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       236 ------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                                        +|.|..||+.+++.+-.+...             .......+...+.  +++.|+.||.|+.
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-------------~~~~~g~~~tagg--lvf~gt~dg~l~a  500 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-------------TIFNGGTLSTAGN--LVFEGSADGRVIA  500 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-------------SSCCCCEEEETTT--EEEEECTTSEEEE
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-------------CCccCccceECCC--EEEEECCCCcEEE
Confidence                              377999999999988777642             2233334555666  7788999999999


Q ss_pred             EEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE
Q 016457          298 FPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                      ||..+++.      +.++..++.....-+         .|..+|+..
T Consensus       501 ~D~~tG~~------lw~~~~~~~~~~~p~---------ty~~~G~qy  532 (689)
T 1yiq_A          501 YAADTGEK------LWEQPAASGVMAAPV---------TYSVDGEQY  532 (689)
T ss_dssp             EETTTCCE------EEEEECSSCCCSCCE---------EEEETTEEE
T ss_pred             EECCCCcc------ceeeeCCCCcccCce---------EEEECCEEE
Confidence            99999887      666653333222334         666777643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=3.9e-11  Score=112.89  Aligned_cols=282  Identities=12%  Similarity=0.091  Sum_probs=175.3

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCc----------E-EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST----------V-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      +..+++++.++.|.-+|..+|+.+..+......          + ..++.. +   ..++.++.|+.|..+|..+|+.+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~---g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-K---GKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-T---TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-C---CEEEEEccCCEEEEEECCCCCEee
Confidence            557788888899999999999998887543221          0 112232 3   488889999999999999999998


Q ss_pred             EEEcC-C-CCeEEEEEeC--CCCeEEEeec------CCeEEEEECcCCceeeeeeecc----------------------
Q 016457          119 SVTAG-S-QEIFCFSFGG--STDYLLAAGC------GSQIQFWDWRNKKQVACLEESH----------------------  166 (389)
Q Consensus       119 ~~~~~-~-~~v~~~~~~~--~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~----------------------  166 (389)
                      .+... . .....+...|  .++.+++++.      ++.|..||.++++.+.++....                      
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            88763 1 1101111111  2456666543      6899999999999887765110                      


Q ss_pred             --------cCCeeEEEEecCCCCeEEEEeCCCc-------------------EEEEecCCCCCCCccceeeec--cC---
Q 016457          167 --------VEDVTQVHFVPNNQNKVVSASVDGL-------------------ICTFDTGGDINDDDLLESVIN--VG---  214 (389)
Q Consensus       167 --------~~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~~~~~~~~--~~---  214 (389)
                              ......++++|++. +++.++.++.                   |..+|.++++.    +-.+..  +.   
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~----~W~~~~~~~d~wd  300 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY----VWHYQTTPGDAWD  300 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE----EEEEESSTTCCSC
T ss_pred             eeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce----eEeeecCCccccc
Confidence                    01113578899885 8888887763                   99999997742    222211  11   


Q ss_pred             ----CceeeEEEecCCCc---EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC--------------------C
Q 016457          215 ----TSVGKVGFFGETNK---HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL--------------------D  267 (389)
Q Consensus       215 ----~~i~~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------------------~  267 (389)
                          .++.-.... .+++   .++.++.+|.++++|..+++.+.......    ..|..                    .
T Consensus       301 ~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~----~~w~~~~~~~~~~pi~~~~~~~~~~~  375 (689)
T 1yiq_A          301 YTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP----QSWTKGMDMKTGRPILDEENAAYWKN  375 (689)
T ss_dssp             CCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC----CSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred             ccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc----cccccccCccCCCcccchhhccccCC
Confidence                111111111 2343   78899999999999999999875543211    00100                    0


Q ss_pred             C-----------CCceeeecccCCCCeEEEEEec-------------------------------------------CCc
Q 016457          268 D-----------VDYFVDCHYPGEGENLWVIGGT-------------------------------------------GAG  293 (389)
Q Consensus       268 ~-----------~~~i~~~~~~~~~~~~~l~~g~-------------------------------------------~dg  293 (389)
                      .           ...-..++|+|+...+|+.+..                                           .+|
T Consensus       376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g  455 (689)
T 1yiq_A          376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG  455 (689)
T ss_dssp             SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred             CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence            0           0011236788887743332211                                           147


Q ss_pred             eEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          294 TVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       294 ~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                      .|+.||+.+++.      +..+. .+ .++..-         .++..+..++.|+.||.|+.||..++.
T Consensus       456 ~l~A~D~~tG~~------~W~~~-~~-~~~~~g---------~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          456 KLIAWDPVKQQA------AWEVP-YV-TIFNGG---------TLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEETTTTEE------EEEEE-ES-SSCCCC---------EEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eEEEEECCCCCe------EeEcc-CC-CCccCc---------cceECCCEEEEECCCCcEEEEECCCCc
Confidence            899999988876      44443 22 122221         345566678889999999999998773

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=1.6e-10  Score=97.97  Aligned_cols=239  Identities=8%  Similarity=0.018  Sum_probs=148.6

Q ss_pred             eeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEE
Q 016457           73 SGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWD  152 (389)
Q Consensus        73 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  152 (389)
                      +..+...........|.+++. .++++...++.|..|+. +++ ...+..+...+..+++++++..+++...++.|..||
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~-~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQR-TLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGT-EEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             eEEEecCCcCccCCeEeCCCC-EEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            334444455678899999982 36777778899999998 454 345555667899999998776444444468899999


Q ss_pred             CcCCceeeeeee--c-ccCCeeEEEEecCCCCeEEE----EeC-------------CCcEEEEecCCCCCCCccceeeec
Q 016457          153 WRNKKQVACLEE--S-HVEDVTQVHFVPNNQNKVVS----ASV-------------DGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       153 ~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      .. ++.......  + ....+..++++|+|. ++++    |..             .+.|+.||..++.     +.... 
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~-  185 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA-  185 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE-
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe-
Confidence            75 543221110  1 123467899999995 7775    332             2567778775432     22222 


Q ss_pred             cCCceeeEEEecCCCcEEEEEecC------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEE
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTHI------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      .......++|+ ++++.|+++...      +.|.+|++..+. +.........        .......++++++|+  +.
T Consensus       186 ~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~--------~~~~pdgi~~d~~G~--lw  253 (305)
T 3dr2_A          186 DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV--------PDGLPDGFCVDRGGW--LW  253 (305)
T ss_dssp             EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC--------SSSCCCSEEECTTSC--EE
T ss_pred             cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC--------CCCCCCeEEECCCCC--EE
Confidence            33456789999 677777766654      689999987654 2111100000        123456788999987  33


Q ss_pred             EEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEE
Q 016457          287 IGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLC  354 (389)
Q Consensus       287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~  354 (389)
                      ++ +.+| |.+|+.. ++.      +..+. .+. .+..+         +|+++++.|+.++.++..+
T Consensus       254 v~-~~~g-v~~~~~~-g~~------~~~~~-~~~-~~~~~---------~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          254 SS-SGTG-VCVFDSD-GQL------LGHIP-TPG-TASNC---------TFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EC-CSSE-EEEECTT-SCE------EEEEE-CSS-CCCEE---------EECTTSCEEEEEETTEEEE
T ss_pred             Ee-cCCc-EEEECCC-CCE------EEEEE-CCC-ceeEE---------EEeCCCCEEEEEcCCeEEE
Confidence            33 3444 9999885 332      34444 222 35666         8889988888777665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=6.3e-10  Score=95.25  Aligned_cols=224  Identities=10%  Similarity=-0.037  Sum_probs=139.8

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC  161 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  161 (389)
                      -....+|+|++. .++++...++.|..||..+++.. .+.. ...+.+++++|++..++ ++. ..|.+||..+++....
T Consensus        50 ~~egp~~~~~~~-~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v-~~~-~gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASG-TAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLI-ASD-DGLFLRDTATGVLTLH  124 (326)
T ss_dssp             BEEEEEEETTTT-EEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEE-EET-TEEEEEETTTCCEEEE
T ss_pred             CCcCCeEeCCCC-EEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEE-EEC-CCEEEEECCCCcEEEE
Confidence            345778999753 56777777889999999877643 3443 46799999997765554 444 4599999887765332


Q ss_pred             eeec---ccCCeeEEEEecCCCCeEEEEeC------CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEE-
Q 016457          162 LEES---HVEDVTQVHFVPNNQNKVVSASV------DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLW-  231 (389)
Q Consensus       162 ~~~~---~~~~v~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-  231 (389)
                      ....   ....+..++++|+|. ++++...      .+.|..++ . +.     ...+.........++|+ ++++.++ 
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~-g~-----~~~~~~~~~~~~~i~~s-~dg~~lyv  195 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-K-GK-----VTKLFADISIPNSICFS-PDGTTGYF  195 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-T-TE-----EEEEEEEESSEEEEEEC-TTSCEEEE
T ss_pred             eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-C-Cc-----EEEeeCCCcccCCeEEc-CCCCEEEE
Confidence            2100   123588999999995 6555432      24566666 3 21     22222233456789999 6676554 


Q ss_pred             EEecCCcEEEEEcC--CC-cee--EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          232 CLTHIETLSIWDWK--DG-QNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       232 ~~~~d~~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      +.+.++.|.+|++.  ++ ...  ..+....         ........++++++|.  +.++...++.|.+|+.. ++. 
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~---------~~~~~p~gi~~d~~G~--lwva~~~~~~v~~~d~~-g~~-  262 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDST---------GIKGGMDGSVCDAEGH--IWNARWGEGAVDRYDTD-GNH-  262 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECT---------TSSSEEEEEEECTTSC--EEEEEETTTEEEEECTT-CCE-
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECC---------CCCCCCCeeEECCCCC--EEEEEeCCCEEEEECCC-CCE-
Confidence            44557899999986  55 321  1221100         0224567788999886  44555456789999883 443 


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCCCC-CCceeEEEe
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQ-SHGIFGWTG  347 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~~~l~s~  347 (389)
                           +..+. .+...+.++         +|+ +++..|+.+
T Consensus       263 -----~~~i~-~~~~~~~~~---------af~g~d~~~L~vt  289 (326)
T 2ghs_A          263 -----IARYE-VPGKQTTCP---------AFIGPDASRLLVT  289 (326)
T ss_dssp             -----EEEEE-CSCSBEEEE---------EEESTTSCEEEEE
T ss_pred             -----EEEEE-CCCCCcEEE---------EEecCCCCEEEEE
Confidence                 34444 445567788         887 777655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=118.90  Aligned_cols=188  Identities=12%  Similarity=-0.010  Sum_probs=108.9

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC-Ce
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EI  127 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v  127 (389)
                      ++..+++++.|+.|+.||..+|+.+..+..  +.+.+..+..++  ..+++++.||.|+.||..+++.+..+..+.. .+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g--~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE--PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC--CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            567899999999999999999999988875  455555555566  5788888999999999999888766654311 11


Q ss_pred             E-EEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc
Q 016457          128 F-CFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL  206 (389)
Q Consensus       128 ~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (389)
                      . +..+. .++.+++++.++.|+.||.++++.+..+. .+.    ...++|++. .+++++.|+.|+.||.+++....  
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W--  154 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRW--  154 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC--
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEE--
Confidence            0 01111 35677778889999999999999988876 332    234566664 88889999999999999764221  


Q ss_pred             ceeeeccCCceeeEEEecCC---CcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          207 LESVINVGTSVGKVGFFGET---NKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                        .....  .....++. .+   ...+++++.++.|+.||..+++.+-.+.
T Consensus       155 --~~~~~--~~~~~~~~-~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          155 --NATYF--DYAASLPE-DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             --EEEEE--EECCBCCC-CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             --eEecc--cccCcccc-CCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence              11111  11222232 21   1457788899999999999998877665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.37  E-value=8.6e-13  Score=114.96  Aligned_cols=181  Identities=11%  Similarity=0.055  Sum_probs=106.0

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc-CCee-E
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV-EDVT-Q  172 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~-~  172 (389)
                      ..+++++.||.|..||..+|+.+..+..  ..+.+..+..++..+++++.|+.|+.||.++++.+..+. .+. ..+. +
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~~~~~s   86 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPELVQAS   86 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-CCHHHHHTTC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCccccccC
Confidence            5899999999999999999999999887  445444455456566666789999999999988776654 221 1111 1


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS  252 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  252 (389)
                      ..+. .+. .+++++.++.|+.||..++..    +..+..+.    ...++ +++..+++++.++.|+.||..+++.+..
T Consensus        87 p~~~-~~~-~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~-p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           87 PCRS-SDG-ILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLS-PSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             SCC-------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ceEe-cCC-EEEEEeCCCEEEEEECCCCcE----EEEecCCC----ccccc-ccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            1111 232 677888899999999997742    22221111    12344 3667888999999999999999987766


Q ss_pred             eecccccccCCccCCCCCceeeecccCCC---CeEEEEEecCCceEEEEEeccCCc
Q 016457          253 FENARSLASDSWTLDDVDYFVDCHYPGEG---ENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +....              .....+..+.   .  .++.++.||.|+.||..+++.
T Consensus       156 ~~~~~--------------~~~~~~~~~~~~~~--~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          156 ATYFD--------------YAASLPEDDVDYKM--SHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEEEE--------------ECCBCCCCCTTCCC--CEEEEETSCEEEEECTTTCCE
T ss_pred             Eeccc--------------ccCccccCCccccc--eEEEECCCCEEEEEECCCCcE
Confidence            54311              1223333321   3  356678899999999998876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.36  E-value=7.6e-10  Score=95.88  Aligned_cols=232  Identities=13%  Similarity=0.124  Sum_probs=146.0

Q ss_pred             CCCCeEEEE-ecCCeEEEEeCCCc----eeeeeec------C-CCCcEEEEEEeCCCCCCEEEEEecC------CeEEEE
Q 016457           48 NDWSLMAVS-LSTNVVKLYSPVTG----QYSGECK------G-HSSTVNQISFSGPSTPHVLHSCSSD------GTIRAW  109 (389)
Q Consensus        48 ~~~~~l~~~-~~d~~i~iw~~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iw  109 (389)
                      +++++|++. ..++.|.++|+.+.    +..+.+.      . -...-..+...|++   +++++..+      |.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence            777777665 44789999998754    5555552      0 11245667788887   66676655      789999


Q ss_pred             EccCCeEEEEEEcCCC---CeEEEEEeCCCCeEEEee-------------------cCCeEEEEECcCCceeeeeeec-c
Q 016457          110 DTRSFHEVWSVTAGSQ---EIFCFSFGGSTDYLLAAG-------------------CGSQIQFWDWRNKKQVACLEES-H  166 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-~  166 (389)
                      |..+++.+.++.....   .-..+-|+|+++.++++.                   .+..|.+||+.+++.+.++..+ .
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999999998874322   234588899999888884                   2689999999998888888732 2


Q ss_pred             cCCeeEEEE--ecCCCCeEEEEe------CCCcEEEEecCCCCCCCcccee--eec----------------cCCceeeE
Q 016457          167 VEDVTQVHF--VPNNQNKVVSAS------VDGLICTFDTGGDINDDDLLES--VIN----------------VGTSVGKV  220 (389)
Q Consensus       167 ~~~v~~~~~--~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~--~~~----------------~~~~i~~~  220 (389)
                      ......|.|  +|+++ ++.+++      .++.|.+|....+.  ......  +..                .......+
T Consensus       250 g~~P~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          250 NRMALELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             EEEEEEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCccceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            234456656  99997 555544      56788776654321  011110  000                02457788


Q ss_pred             EEecCCCcEEEEEec-CCcEEEEEcCCC---ceeEEeecccccccCCcc--CCCCCceeeecccCCCCeEEE
Q 016457          221 GFFGETNKHLWCLTH-IETLSIWDWKDG---QNVASFENARSLASDSWT--LDDVDYFVDCHYPGEGENLWV  286 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~-d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l  286 (389)
                      .++ +++++|+++.. .+.|.+||+.+.   +.+..+..........+.  ..-...-..+.++|+|+.+|+
T Consensus       327 ~lS-~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV  397 (462)
T 2ece_A          327 DIS-LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV  397 (462)
T ss_dssp             EEC-TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred             EEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence            999 67777776665 679999998633   444444332100000000  000123578899999995433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.33  E-value=9.4e-09  Score=85.24  Aligned_cols=231  Identities=9%  Similarity=-0.026  Sum_probs=140.8

Q ss_pred             CeEEEEecCCeEEEEeCCCceee-----eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCC
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYS-----GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ  125 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  125 (389)
                      .+|+.+. .+.|+.++++.....     ..+......+..++|.+++. .++++-..++.|..+++........+.....
T Consensus         2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            3555555 357888888754321     11222234578999998652 4555555678999999876554333333335


Q ss_pred             CeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC--CCcEEEEecCCCCC
Q 016457          126 EIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV--DGLICTFDTGGDIN  202 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~  202 (389)
                      ....++++|.++.++.+.. .+.|.++++..... ..+..........++++|++..++++...  .+.|..+++.... 
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-  157 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence            7889999987788777765 68999999864332 22221222457899999976434444433  4688888887321 


Q ss_pred             CCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          203 DDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       203 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                          ...+. ..-.....+++++.++.++++....+.|.++|+........+...             .....++..  +
T Consensus       158 ----~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-------------~~P~gi~~d--~  218 (267)
T 1npe_A          158 ----RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-------------QYPFAVTSY--G  218 (267)
T ss_dssp             ----CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-------------CSEEEEEEE--T
T ss_pred             ----cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-------------CCceEEEEe--C
Confidence                11111 122457889999444555566666789999998754333322211             223455543  4


Q ss_pred             CeEEEEEecCCceEEEEEeccCCc
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +.+ .++....+.|.+++..+++.
T Consensus       219 ~~l-yva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          219 KNL-YYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             TEE-EEEETTTTEEEEEETTTTEE
T ss_pred             CEE-EEEECCCCeEEEEeCCCCCc
Confidence            543 34555668899999987765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.32  E-value=3.1e-10  Score=101.73  Aligned_cols=245  Identities=8%  Similarity=0.042  Sum_probs=166.9

Q ss_pred             CCCCeEEEEec-CCeEEEEeCCCceeeeeecC-CCCcEEEEEE-e-CCCCCCEEEEEe------------------cCCe
Q 016457           48 NDWSLMAVSLS-TNVVKLYSPVTGQYSGECKG-HSSTVNQISF-S-GPSTPHVLHSCS------------------SDGT  105 (389)
Q Consensus        48 ~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~-~-~~~~~~~l~s~~------------------~dg~  105 (389)
                      +||+++++... ++.|.+.|+.+.+....+.- .......+++ . |++  .++++++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~--~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS--NYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC--SEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC--cEEEEecccccccCCCCcccccccccCce
Confidence            38888887765 56799999999987774432 2345788888 4 788  6777774                  3468


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC--------------------------------------e
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS--------------------------------------Q  147 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~  147 (389)
                      +.+.|..+.+...++.... ....++++|+++++++++.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999999999988643 567788999999999988532                                      4


Q ss_pred             EEEEECcC--Cce-eeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC-------CCCccceeeeccCCce
Q 016457          148 IQFWDWRN--KKQ-VACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI-------NDDDLLESVINVGTSV  217 (389)
Q Consensus       148 i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~i  217 (389)
                      |.+.|.++  ++. +..+.  -.....++.++|+|+..++++..+.+|.++|+.+..       .....+..........
T Consensus       256 V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             EEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            67777776  444 44554  345678899999998556666678999999999431       0111122233345677


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCC----------CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKD----------GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ..++|+ +++...++.-.|++|.+||+..          .+.+..+..+..       .+|........++|||+.++.+
T Consensus       334 ~h~aF~-~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-------pGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          334 LHTAFD-GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-------PGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEEEC-TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-------EEEEEETTTTSTTCCSSEEEEE
T ss_pred             ceEEEC-CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-------cccceeccceEeCCCCCEEEEc
Confidence            899999 6676566677799999999876          445556554321       0132333556789999943333


Q ss_pred             EecC-Cce----------EEEEEeccCCc
Q 016457          288 GGTG-AGT----------VGYFPVNYGGA  305 (389)
Q Consensus       288 ~g~~-dg~----------i~i~~~~~~~~  305 (389)
                      .... |..          -.++|+..++.
T Consensus       406 Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          406 SKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             ESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            3333 442          28899976654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.31  E-value=8.3e-10  Score=94.61  Aligned_cols=219  Identities=12%  Similarity=0.028  Sum_probs=153.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFC  129 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  129 (389)
                      +..|.+++.++.|..+|.. ++....+..+...+.++...+++   .++.++.++.|..+|.. ++.+..+......+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence            4577888889999999988 87777666555666777777666   57778888999999998 8888887766666777


Q ss_pred             EEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee
Q 016457          130 FSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES  209 (389)
Q Consensus       130 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  209 (389)
                      +...++ +.+++++  +.|..+| .+++.+..+. .....+.++...+++  .+..++.++.+..+|....     .+..
T Consensus       182 ~~~d~~-g~l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~-----~~~~  249 (330)
T 3hxj_A          182 ASIGKD-GTIYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGT-----EKWR  249 (330)
T ss_dssp             CEECTT-CCEEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSC-----EEEE
T ss_pred             eEEcCC-CEEEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCC--eEEEEcCCCeEEEECCCCC-----EeEE
Confidence            777644 4565555  8899999 7777776665 445668888888886  4666777888988875421     2233


Q ss_pred             eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          210 VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .......+..+.+. .++ .|++++.++.|..+|. +++.+..+..            ....+.++...+++.   |..|
T Consensus       250 ~~~~~~~~~~~~~~-~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~------------~~~~~~~~~~d~~g~---l~~g  311 (330)
T 3hxj_A          250 FKTGKRIESSPVIG-NTD-TIYFGSYDGHLYAINP-DGTEKWNFET------------GSWIIATPVIDENGT---IYFG  311 (330)
T ss_dssp             EECSSCCCSCCEEC-TTS-CEEEECTTCEEEEECT-TSCEEEEEEC------------SSCCCSCCEECTTCC---EEEE
T ss_pred             eeCCCCccccceEc-CCC-eEEEecCCCCEEEECC-CCcEEEEEEc------------CCccccceEEcCCCE---EEEE
Confidence            33233334445554 344 6788888989999996 6776666553            224456666667765   4568


Q ss_pred             cCCceEEEEEeccC
Q 016457          290 TGAGTVGYFPVNYG  303 (389)
Q Consensus       290 ~~dg~i~i~~~~~~  303 (389)
                      +.+|.+++...+..
T Consensus       312 t~~G~~~~~~~~~~  325 (330)
T 3hxj_A          312 TRNGKFYALFNLEH  325 (330)
T ss_dssp             CTTSCEEEEEC---
T ss_pred             cCCCeEEEEecccc
Confidence            89999998877643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.31  E-value=2.2e-08  Score=83.01  Aligned_cols=242  Identities=7%  Similarity=-0.050  Sum_probs=151.6

Q ss_pred             CCeEEEEecCcee-------eeeec-CcceEEEeecCCCCeEEEEe-cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC
Q 016457           20 VNSIKRFGLKNSI-------QTNFG-DDYVFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQYSGECKGHSSTVNQISFSG   90 (389)
Q Consensus        20 ~~~i~~w~~~~~~-------~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~   90 (389)
                      .+.|+.+++....       ..+.. ...+..++|++++..|+.+. .++.|..++...+.....+.........+++.+
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe
Confidence            3467777775321       11222 35678999999766666554 468999999876544333332335678999998


Q ss_pred             CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCceeeeeeeccc
Q 016457           91 PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus        91 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      ++. .++++-...+.|.++++........+.........++++|.++.++.+..   .+.|..+++.. .....+.....
T Consensus        89 ~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~  166 (267)
T 1npe_A           89 LGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNL  166 (267)
T ss_dssp             TTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTC
T ss_pred             cCC-eEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCC
Confidence            652 45555556778999998643322222222356789999987888877765   36888888763 33333321223


Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .....++++|++..++++-...+.|.++|+.+..     ...+.........++..  ++.++++....+.|..+|..++
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-----~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-----RRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-----EEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-----eEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence            4578999999875455666667899999997421     11222222334566654  4445555556689999999999


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      +.+..+....           ......+++.|++
T Consensus       240 ~~~~~i~~g~-----------~~~p~gi~~~~~~  262 (267)
T 1npe_A          240 KEMDTFHPHK-----------QTRLYGITIALSQ  262 (267)
T ss_dssp             EEEEEECCSS-----------CCCCCCEEEECSC
T ss_pred             CceEEEcccc-----------ccccceeeecCcc
Confidence            8888876421           1235566666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=7.7e-10  Score=95.44  Aligned_cols=237  Identities=9%  Similarity=0.027  Sum_probs=145.5

Q ss_pred             CcEEEEEEeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEE-------cCCCCeEEEEEeCCCCeEEEeec------C
Q 016457           81 STVNQISFSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVT-------AGSQEIFCFSFGGSTDYLLAAGC------G  145 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~------d  145 (389)
                      .....+++++++  +++++..  .++.++||.+.+++.. .+.       .+-..+.++++++++. |+++..      +
T Consensus        17 ~~p~~va~~~~g--~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDG--RLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTS--CEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSC
T ss_pred             CCcceEEECCCC--CEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCC
Confidence            678899999998  6777753  2343566666555432 221       2346789999997754 555432      5


Q ss_pred             CeEEEEECcCCceeeeeeec-----ccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCcc----------c
Q 016457          146 SQIQFWDWRNKKQVACLEES-----HVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDL----------L  207 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~----------~  207 (389)
                      +.|.+||+.+++.+..+...     +...+..+++++++...+++..   .++.|.+||+.++......          .
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            79999999998877666511     2235689999986543556555   6789999998754210000          0


Q ss_pred             -eeeec--------------cCCceeeEEEecCCCcEEEEEecCC-cEEEEEcC---CCce--------eEEeecccccc
Q 016457          208 -ESVIN--------------VGTSVGKVGFFGETNKHLWCLTHIE-TLSIWDWK---DGQN--------VASFENARSLA  260 (389)
Q Consensus       208 -~~~~~--------------~~~~i~~~~~~~~~~~~l~~~~~d~-~i~i~d~~---~~~~--------~~~~~~~~~~~  260 (389)
                       ....+              ....+..++++ ++++.|+.+...+ .+..++..   .+..        +..+ +     
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s-~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g-----  245 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD-AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S-----  245 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEEC-TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E-----
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEec-cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c-----
Confidence             00000              01235789999 6777777776665 55555431   1110        0111 1     


Q ss_pred             cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec-ccceeeeeccCCCcccCCCCCC
Q 016457          261 SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG-GHTAVVRSVLPMPSVQGRPAQS  339 (389)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~  339 (389)
                             +......++++++|.  +.++...++.|.+|+..+++.       ..+.. .+.....++         +|++
T Consensus       246 -------~~g~pdgia~d~~G~--l~va~~~~~~V~~~d~~~G~~-------~~~~~~~~~~~p~~v---------a~~~  300 (343)
T 2qe8_A          246 -------EKPICDGISIDKDHN--IYVGDLAHSAIGVITSADRAY-------KLLVTDEKLSWTDSF---------NFGS  300 (343)
T ss_dssp             -------ECCSCSCEEECTTCC--EEEEEGGGTEEEEEETTTTEE-------EEEEECGGGSCEEEE---------EECT
T ss_pred             -------cCCCCceEEECCCCC--EEEEccCCCeEEEEECCCCCE-------EEEEECCceecCCee---------EECC
Confidence                   223456789999987  677888889999999844443       22221 123456677         8888


Q ss_pred             CceeEEEecCCCeE
Q 016457          340 HGIFGWTGGEDGRL  353 (389)
Q Consensus       340 ~~~~l~s~~~dg~v  353 (389)
                      ++.++++.+..+.+
T Consensus       301 ~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          301 DGYLYFDCNQLHHS  314 (343)
T ss_dssp             TSCEEEEECCGGGS
T ss_pred             CCcEEEEeCccccc
Confidence            88877777654444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.29  E-value=1.9e-09  Score=96.76  Aligned_cols=242  Identities=12%  Similarity=0.000  Sum_probs=155.9

Q ss_pred             CCCCCEEEEE-ecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEE-e-CCCCeEEEeec------------------CCeE
Q 016457           91 PSTPHVLHSC-SSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSF-G-GSTDYLLAAGC------------------GSQI  148 (389)
Q Consensus        91 ~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i  148 (389)
                      ++  ++++.. ..++.|.+.|+.+.+....+... ......+++ + |+++++++++.                  ++.+
T Consensus       100 DG--~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DG--RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EE--EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CC--CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            55  455554 45667999999999988866643 356888888 4 89999999851                  4689


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC--------------------------------------
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG--------------------------------------  190 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------------------------------------  190 (389)
                      .++|..+.+.+.++.-+  .....++++|+|+ ++++.+.+.                                      
T Consensus       178 tvID~~t~~v~~qI~Vg--g~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVS--GNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEETTTTEEEEEEEES--SCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEECCCCeEEEEEEeC--CCccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            99999999988888722  2457788999996 777766442                                      


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCc------------eeEEeeccc
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQ------------NVASFENAR  257 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~  257 (389)
                      .|.+.|.++..  ...............++.++ |+++++++++ .+.+|.++|+.+.+            ......   
T Consensus       255 ~V~VID~~~~~--~~~~~~~Ipvg~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---  328 (595)
T 1fwx_A          255 GVKVVDGRKEA--SSLFTRYIPIANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---  328 (595)
T ss_dssp             TEEEEECSGGG--CCSSEEEEEEESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---
T ss_pred             cEEEEeCcccC--CceeEEEEecCCCceEEEEc-CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---
Confidence            35666666310  11212233334466788999 6777666555 57899999998653            122222   


Q ss_pred             ccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc----cccCCCeEEEecccceeeeeccCCCccc
Q 016457          258 SLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA----ATIGPPEAVLVGGHTAVVRSVLPMPSVQ  333 (389)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~  333 (389)
                                -......++|+++| .+ .++.-.|+.|.+|++.....    ....+.+.++. .|-.+-....    ..
T Consensus       329 ----------vG~gP~h~aF~~dG-~a-Y~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh~~~----~~  391 (595)
T 1fwx_A          329 ----------LGLGPLHTAFDGRG-NA-YTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKT----VM  391 (595)
T ss_dssp             ----------CCSCEEEEEECTTS-EE-EEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEE----TT
T ss_pred             ----------CCCCcceEEECCCC-eE-EEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-ccccccccee----cc
Confidence                      22567889999999 54 45677899999999987210    00012245554 3322111000    01


Q ss_pred             CCCCCCCceeEEEec---CCCeE----------EEEeccC
Q 016457          334 GRPAQSHGIFGWTGG---EDGRL----------CCWLSDD  360 (389)
Q Consensus       334 ~~~~s~~~~~l~s~~---~dg~v----------~iW~~~~  360 (389)
                      ...++|||++|+++.   .|..+          .++++..
T Consensus       392 g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          392 GETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             TTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             ceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            127899999998863   35432          7788753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=6.7e-09  Score=84.56  Aligned_cols=219  Identities=8%  Similarity=0.030  Sum_probs=145.7

Q ss_pred             ceeeeeecCCCC--cEEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCeEEEEEEcCCC-CeEEEEEeCCCCeEEEeec
Q 016457           70 GQYSGECKGHSS--TVNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        70 ~~~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~  144 (389)
                      .+.+.++. |..  ....+.|++++  .++++.+.  ++.|+++|+.+++.+..+..... ....+++.  ++.++.+..
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence            34555664 443  35799999876  45555543  57999999999999998875422 33456665  567777765


Q ss_pred             -CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc--CC---cee
Q 016457          145 -GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV--GT---SVG  218 (389)
Q Consensus       145 -d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~---~i~  218 (389)
                       ++.+.++|..+.+.+.++..+ ..  ....+.++++ .++++..++.|.++|..+..    ....+...  ..   .++
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~-~l~vs~gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGK-ILYGSDGTSILYEIDPHTFK----LIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSS-SEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEE
T ss_pred             cCCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCC-EEEEECCCCeEEEEECCCCc----EEEEEEECCCCcccccce
Confidence             899999999999999988722 12  2244566776 55556678899999998542    23333211  11   356


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEE
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGY  297 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i  297 (389)
                      .+.|.  ++..++....++.|.+.|..+++.+..+......... .-..........++|+|+++++ ++++...+.|.+
T Consensus       156 ele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l-fVTgk~~~~v~~  232 (266)
T 2iwa_A          156 ELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI-FVTGKLWPKLFE  232 (266)
T ss_dssp             EEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE-EEEETTCSEEEE
T ss_pred             eEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE-EEECCCCCeEEE
Confidence            77776  4555555556789999999999999888742100000 0000011356899999998874 578888899999


Q ss_pred             EEeccCC
Q 016457          298 FPVNYGG  304 (389)
Q Consensus       298 ~~~~~~~  304 (389)
                      .++....
T Consensus       233 i~l~~~~  239 (266)
T 2iwa_A          233 IKLHLVR  239 (266)
T ss_dssp             EEEEECC
T ss_pred             EEEeccc
Confidence            9987643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=8.7e-09  Score=96.72  Aligned_cols=280  Identities=10%  Similarity=0.069  Sum_probs=172.5

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCCc----------E-EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST----------V-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      +..+++++.++.|.-+|..+|+.+..+......          + ..+++. +   ..++.++.|+.|..+|..+|+.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-G---DKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-B---TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-C---CEEEEEcCCCEEEEEECCCCCEee
Confidence            457777888999999999999998877543211          0 122332 2   378888899999999999999999


Q ss_pred             EEEcCC----CCeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeec--cc------------------
Q 016457          119 SVTAGS----QEIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEES--HV------------------  167 (389)
Q Consensus       119 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~--~~------------------  167 (389)
                      .+....    ..+.+ ..+  .++.++++..      +|.|..+|.++++.+.++...  ..                  
T Consensus       142 ~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            887631    11111 111  2456666654      489999999999998877511  00                  


Q ss_pred             ----------CCeeEEEEecCCCCeEEEEeCCC-------------------cEEEEecCCCCCCCccceeeec--cC--
Q 016457          168 ----------EDVTQVHFVPNNQNKVVSASVDG-------------------LICTFDTGGDINDDDLLESVIN--VG--  214 (389)
Q Consensus       168 ----------~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~~~--~~--  214 (389)
                                .....+++.|+.. +++.++.++                   .|..+|.++++    .+-....  |.  
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~----~~W~~~~~~~~~w  294 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK----LAWHYQVTPGDSW  294 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESSTTCCS
T ss_pred             cceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc----eeeEeecCCCccc
Confidence                      1112478888875 888887766                   38999998774    1212211  11  


Q ss_pred             -----CceeeEEEecCCCc---EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC-----------------CC-
Q 016457          215 -----TSVGKVGFFGETNK---HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL-----------------DD-  268 (389)
Q Consensus       215 -----~~i~~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-  268 (389)
                           .+.....+. .+++   .++.++.+|.++++|..+++.+.......    ..|..                 .. 
T Consensus       295 d~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~----~~w~~~~d~~~g~p~~~~~~~~~~~  369 (668)
T 1kv9_A          295 DFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK----VTWAEKVDLATGRPVEAPGVRYEKE  369 (668)
T ss_dssp             CCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC----CCSEEEECTTTCCEEECTTTTCSSS
T ss_pred             cccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc----cccccccccccCCccccccccccCC
Confidence                 122222222 2443   68889999999999999999885543221    00100                 00 


Q ss_pred             ----------CCceeeecccCCCCeEEEEE----------------------------------ecCCceEEEEEeccCC
Q 016457          269 ----------VDYFVDCHYPGEGENLWVIG----------------------------------GTGAGTVGYFPVNYGG  304 (389)
Q Consensus       269 ----------~~~i~~~~~~~~~~~~~l~~----------------------------------g~~dg~i~i~~~~~~~  304 (389)
                                ...-..++++|+...+|+-+                                  ...+|.|..||..+++
T Consensus       370 ~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~  449 (668)
T 1kv9_A          370 PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK  449 (668)
T ss_dssp             CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE
T ss_pred             eeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc
Confidence                      00011256777766443311                                  1234889999998887


Q ss_pred             ccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       305 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                      .      +.+..  +..++...         .....+.+++.++.||.|+.||...+.
T Consensus       450 ~------~W~~~--~~~~~~~~---------~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          450 A------AWKVP--YPTHWNGG---------TLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             E------EEEEE--ESSSCCCC---------EEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             E------EEEcc--CCCCCcCc---------eeEeCCCEEEEECCcccchhhhhhcCh
Confidence            6      33333  11112211         233456667888999999999998763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.24  E-value=8.9e-09  Score=83.83  Aligned_cols=205  Identities=10%  Similarity=0.015  Sum_probs=139.6

Q ss_pred             eeeeeecC--cceEEEeecCCCCeEEEEec--CCeEEEEeCCCceeeeeecCCC-CcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           31 SIQTNFGD--DYVFEIVPKNDWSLMAVSLS--TNVVKLYSPVTGQYSGECKGHS-STVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~~--~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+.++...  .....++|++++.+.++.+.  ++.|.++|+.+++.+..+.-.. .....+++.. +  .+.++.-.++.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~--~lyv~t~~~~~   87 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-E--KLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-T--EEEEEETTCSE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-C--EEEEEEecCCE
Confidence            34445442  34679999998744444443  5799999999999888765222 1223455652 2  35555567889


Q ss_pred             EEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecc-c---CCeeEEEEecCCC
Q 016457          106 IRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESH-V---EDVTQVHFVPNNQ  180 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~  180 (389)
                      +.++|..+.+.+.++... ...   ..++++++.++++..++.|.++|..+.+.+..+.-+. .   ..++.+.|. ++.
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            999999999999998754 222   3344578888887778999999999998888776221 1   136678888 563


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccceeeecc-------------CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLESVINV-------------GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                       +++....++.|.+.|..++.    .+..+...             ......++|+|....+++++...+.+...++...
T Consensus       164 -lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 -VWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -EEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -EEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             66666568899999999763    22222211             1356899999555566777777888888887643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.24  E-value=1.6e-08  Score=93.03  Aligned_cols=154  Identities=12%  Similarity=0.091  Sum_probs=101.8

Q ss_pred             EeecCCCCe----EEEEecCCeEEEEeCCCceeeeeecCCC----CcEE-EEEEeCCCCCCEEEEEe------cCCeEEE
Q 016457           44 IVPKNDWSL----MAVSLSTNVVKLYSPVTGQYSGECKGHS----STVN-QISFSGPSTPHVLHSCS------SDGTIRA  108 (389)
Q Consensus        44 ~~~~~~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~-~i~~~~~~~~~~l~s~~------~dg~i~i  108 (389)
                      ++++|.+..    |++++.|+.|.-+|..+|+.+.......    ..+. ..... ++   .++.++      .++.|+.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g---~V~vg~~g~e~g~~g~v~A  186 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD---KVIIGSSGAELGVRGYLTA  186 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT---EEEECCBCGGGTCCCEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC---EEEEEecccccCCCCeEEE
Confidence            345444444    8888889999999999999887754321    0111 11122 44   555554      3899999


Q ss_pred             EEccCCeEEEEEEcCCCCe--------------------------------------EEEEEeCCCCeEEEeecC-----
Q 016457          109 WDTRSFHEVWSVTAGSQEI--------------------------------------FCFSFGGSTDYLLAAGCG-----  145 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~~~l~~~~~d-----  145 (389)
                      +|..+++.+..+.......                                      ..+++.+..+.++.+..+     
T Consensus       187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~  266 (599)
T 1w6s_A          187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN  266 (599)
T ss_dssp             EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             EECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcccc
Confidence            9999999999887542110                                      134566677788877665     


Q ss_pred             -----------CeEEEEECcCCceeeeeeecccC--------CeeEEEEe-cCCC--CeEEEEeCCCcEEEEecCCCC
Q 016457          146 -----------SQIQFWDWRNKKQVACLEESHVE--------DVTQVHFV-PNNQ--NKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       146 -----------~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~--~~l~~~~~d~~i~i~d~~~~~  201 (389)
                                 +.|..+|.++++.+..++..+..        ...-+... .+|+  ..++.++.+|.++++|.++++
T Consensus       267 ~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence                       38999999999998877632221        11112222 4552  267778899999999998774

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.23  E-value=3.1e-08  Score=85.95  Aligned_cols=245  Identities=11%  Similarity=0.043  Sum_probs=143.4

Q ss_pred             CCCCCCEEEEEecCCeEEEEEccCC----eEEEEEE-------cCCCCeEEEEEeCCCCeEEEeecC------CeEEEEE
Q 016457           90 GPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVT-------AGSQEIFCFSFGGSTDYLLAAGCG------SQIQFWD  152 (389)
Q Consensus        90 ~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd  152 (389)
                      ++.+ .+++++..+++|.++|+.+.    +...+++       .....-..+.+.|++ .++++..+      +.|.++|
T Consensus        93 ~~r~-~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERR-FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSC-EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCC-EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            5553 45666778899999998755    6666663       112245567788888 55554444      7899999


Q ss_pred             CcCCceeeeeeec-cc-CCeeEEEEecCCCCeEEEEe-------------------CCCcEEEEecCCCCCCCccceeee
Q 016457          153 WRNKKQVACLEES-HV-EDVTQVHFVPNNQNKVVSAS-------------------VDGLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       153 ~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      .++++.+.++..+ .. ..-..+.|+|+++ .+++..                   .+.+|.+||+.++    +.+..+.
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----k~~~tI~  245 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----KRIHSLT  245 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----EEEEEEE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----cEeeEEe
Confidence            9999999888622 11 2234588899995 777774                   3689999999853    2333332


Q ss_pred             cc--CCceeeEEE--ecCCCcEEEEEe------cCCcEEEEEcCCCce--eEEeecccccccCCcc-----CCC-CCcee
Q 016457          212 NV--GTSVGKVGF--FGETNKHLWCLT------HIETLSIWDWKDGQN--VASFENARSLASDSWT-----LDD-VDYFV  273 (389)
Q Consensus       212 ~~--~~~i~~~~~--~~~~~~~l~~~~------~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~-----~~~-~~~i~  273 (389)
                      ..  ......+.|  + ++++++++++      .+++|.+|....++.  .+.+............     ... .....
T Consensus       246 vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          246 LGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             SCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             cCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            21  123455656  6 6777777666      456888877655431  1111100000000000     000 14567


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccce-ee-----eeccCCCcccCCCCCCCceeEEEe
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTA-VV-----RSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v-----~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      .+.+++||+.+|+ +.-..+.|.+||+.....   .+.+..+..+-.- .+     ..+...+..+  +++|||++|+++
T Consensus       325 ~I~lS~DGrfLYV-Snrg~d~VavfdV~d~~~---~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~--~lSpDGk~LyVa  398 (462)
T 2ece_A          325 DIDISLDDKFLYL-SLWGIGEVRQYDISNPFK---PVLTGKVKLGGIFHRADHPAGHKLTGAPQML--EISRDGRRVYVT  398 (462)
T ss_dssp             CEEECTTSCEEEE-EETTTTEEEEEECSSTTS---CEEEEEEECBTTTTCBCCTTSCCCCSCCCCE--EECTTSSEEEEE
T ss_pred             EEEECCCCCEEEE-EeCCCCEEEEEEecCCCC---cEEEEEEEeCCeeccccccccccCCCCCCEE--EEcCCCCEEEEE
Confidence            8999999996543 444568999999964321   1123344322100 00     0000112333  899999999988


Q ss_pred             c
Q 016457          348 G  348 (389)
Q Consensus       348 ~  348 (389)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=6.8e-09  Score=97.41  Aligned_cols=236  Identities=13%  Similarity=0.101  Sum_probs=150.0

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCC----CcEEE-EEEeCCCCCCEEEEEec------CCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHS----STVNQ-ISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~~-i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~  118 (389)
                      +..+++++.|+.|..+|..+|+.+..+....    ..+.+ .... ++   .++.+..      +|.|..+|..+++.+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~---~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG---KVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT---EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC---EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            4578888889999999999999888775421    11111 1111 33   5555543      5899999999999999


Q ss_pred             EEEcCC-C------------------------------CeEEEEEeCCCCeEEEeecCC-------------------eE
Q 016457          119 SVTAGS-Q------------------------------EIFCFSFGGSTDYLLAAGCGS-------------------QI  148 (389)
Q Consensus       119 ~~~~~~-~------------------------------~v~~~~~~~~~~~l~~~~~d~-------------------~i  148 (389)
                      .+.... .                              ....+++.|..+.++++..++                   .|
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            887421 0                              012468888888888887665                   49


Q ss_pred             EEEECcCCceeeeeeec-cc-------CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCCCCc----c---ceeee
Q 016457          149 QFWDWRNKKQVACLEES-HV-------EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDINDDD----L---LESVI  211 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~----~---~~~~~  211 (389)
                      ..+|.++++.+..++.. |.       .+.....+..+++  ..++.++.+|.++++|..+++....    .   ...+.
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            99999999998887622 21       2222233333442  2588899999999999987742100    0   00000


Q ss_pred             -ccCC------------------------ceeeEEEecCCCcEEEEEe--------------------------------
Q 016457          212 -NVGT------------------------SVGKVGFFGETNKHLWCLT--------------------------------  234 (389)
Q Consensus       212 -~~~~------------------------~i~~~~~~~~~~~~l~~~~--------------------------------  234 (389)
                       ....                        .-..++++|..+ ++++..                                
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence             0000                        011267774333 333311                                


Q ss_pred             ----cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          235 ----HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       235 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                          .+|.|..||+.+++.+-.+...             .......+...+.  +++.|+.||.|+.||..+++.
T Consensus       432 p~~~~~g~l~A~D~~tG~~~W~~~~~-------------~~~~~~~~~t~gg--~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          432 PAAVVSGALLAWDPVKQKAAWKVPYP-------------THWNGGTLSTAGN--LVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEES-------------SSCCCCEEEETTT--EEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCccceEEEEeCCCCcEEEEccCC-------------CCCcCceeEeCCC--EEEEECCcccchhhhhhcChh
Confidence                2378999999999988776542             2223333444566  778889999999999999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.19  E-value=1.8e-08  Score=92.58  Aligned_cols=236  Identities=12%  Similarity=0.067  Sum_probs=146.2

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCC----CcEE-EEEEeCCCCCCEEEEEec------CCeEEEEEccCCeEEE
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHS----STVN-QISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHEVW  118 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~-~i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~  118 (389)
                      +..+++++.++.|..+|..+|+.+..+....    ..+. ..... ++   .++.++.      ++.|..+|..+++.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g---~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD---TVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT---EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC---EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            4578888889999999999999887764221    0121 11111 34   5565554      7999999999999999


Q ss_pred             EEEcCCCC-------------------------------------e-EEEEEeCCCCeEEEeecC---------------
Q 016457          119 SVTAGSQE-------------------------------------I-FCFSFGGSTDYLLAAGCG---------------  145 (389)
Q Consensus       119 ~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d---------------  145 (389)
                      .+......                                     + ..+++.+..+.++.+..+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            88753211                                     0 135667667777776532               


Q ss_pred             -CeEEEEECcCCceeeeeeeccc--------CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCCCCCcc-----c--
Q 016457          146 -SQIQFWDWRNKKQVACLEESHV--------EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDINDDDL-----L--  207 (389)
Q Consensus       146 -~~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~-----~--  207 (389)
                       +.|..+|.++++.+..++..+.        ....-+...++|+  ..++.++.+|.++++|..+++.....     .  
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence             3699999999999887762211        0111122224552  25778889999999999876421100     0  


Q ss_pred             -eeee-ccCCce--------------------------eeEEEecCCCcEEEEEe-------------------------
Q 016457          208 -ESVI-NVGTSV--------------------------GKVGFFGETNKHLWCLT-------------------------  234 (389)
Q Consensus       208 -~~~~-~~~~~i--------------------------~~~~~~~~~~~~l~~~~-------------------------  234 (389)
                       ..+. ....++                          ..++++| +..++++..                         
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccc
Confidence             0000 000111                          2467774 334454443                         


Q ss_pred             ------------cCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          235 ------------HIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       235 ------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                                  .++.|..||+.+++.+-++...             ..+....+...+.  .++.++.||.|+.||..+
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-------------~~~~~~~~~t~gg--~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-------------FAAWGGTLYTKGG--LVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-------------SCCCSBCEEETTT--EEEEECTTSEEEEEETTT
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-------------CCccceeEEECCC--EEEEEcCCCeEEEEECCC
Confidence                        3478999999999888776532             2222333333455  566688999999999999


Q ss_pred             CCc
Q 016457          303 GGA  305 (389)
Q Consensus       303 ~~~  305 (389)
                      ++.
T Consensus       495 G~~  497 (571)
T 2ad6_A          495 GKE  497 (571)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            887

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.18  E-value=7.1e-08  Score=88.68  Aligned_cols=195  Identities=11%  Similarity=0.047  Sum_probs=122.8

Q ss_pred             CCeEEEEec-CCeEEEEeC-CCceeeeeecCCCC-c----------EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           50 WSLMAVSLS-TNVVKLYSP-VTGQYSGECKGHSS-T----------VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        50 ~~~l~~~~~-d~~i~iw~~-~~~~~~~~~~~~~~-~----------v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      +..+++++. ++.|.-+|. .+|+.+..+..... .          -..++.. +   ..++.++.|+.|..+|..+++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-A---GQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-T---TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-C---CEEEEEeCCCEEEEEECCCCCE
Confidence            446777777 889999999 89998877653221 0          0122332 3   4788888999999999999999


Q ss_pred             EEEEEcCCC----CeE-EEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccC-----------------
Q 016457          117 VWSVTAGSQ----EIF-CFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVE-----------------  168 (389)
Q Consensus       117 ~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~-----------------  168 (389)
                      +..+.....    .+. ....  .++.+++++.      ++.|..+|.++++.+.++......                 
T Consensus       138 ~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          138 NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            988775321    222 1112  2456777665      789999999999998776511100                 


Q ss_pred             --------------------CeeEEEEecCCCCeEEEEeCC----------------CcEEEEecCCCCCCCccceeee-
Q 016457          169 --------------------DVTQVHFVPNNQNKVVSASVD----------------GLICTFDTGGDINDDDLLESVI-  211 (389)
Q Consensus       169 --------------------~v~~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~-  211 (389)
                                          ....+++.++.. .++.++.+                +.|..+|.++++    .+-... 
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~----~~W~~~~  290 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM----AKWGYQK  290 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC----EEEEEES
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCc----EEEEecC
Confidence                                002356777664 66666532                258899998764    122211 


Q ss_pred             -ccCC----ceeeEEEe--cCCC---cEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          212 -NVGT----SVGKVGFF--GETN---KHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       212 -~~~~----~i~~~~~~--~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                       .+..    .+....+.  ..++   ..++.++.+|.++++|..+++.+..+..
T Consensus       291 ~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence             1110    11121221  0245   3577888899999999999998877653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.16  E-value=3.6e-08  Score=79.25  Aligned_cols=200  Identities=15%  Similarity=0.156  Sum_probs=131.8

Q ss_pred             eeeeeecCCCCc--EEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeEEEEEEcCCCCeE--EEEEeCCCCeEEEeec
Q 016457           71 QYSGECKGHSST--VNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHEVWSVTAGSQEIF--CFSFGGSTDYLLAAGC  144 (389)
Q Consensus        71 ~~~~~~~~~~~~--v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~  144 (389)
                      +.+.++. |...  ...+.|+ ++  .++.+.+.+|  .|+++|+.+++.+..+.... ...  .++.  .++.++....
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~~ly~ltw  104 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKDKIVGLTW  104 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETTEEEEEES
T ss_pred             EEEEEec-CCCCcccceEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCCEEEEEEe
Confidence            3455553 4433  4788898 55  5777877776  89999999999999988753 333  3555  4567766665


Q ss_pred             -CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cC---Ccee
Q 016457          145 -GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VG---TSVG  218 (389)
Q Consensus       145 -d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~---~~i~  218 (389)
                       ++.+.+||..+.+.+.++.-  ..  ....+.+++. .|+.+..++.|.++|..+..    ....+..  ..   ..++
T Consensus       105 ~~~~v~v~D~~t~~~~~ti~~--~~--eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRSFNY--DG--EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLT----PVRTITVTAHGEELPELN  175 (262)
T ss_dssp             SSSEEEEEETTTCCEEEEEEC--SS--CCCCEEECSS-CEEECCSSSEEEEECTTTCS----EEEEEECEETTEECCCEE
T ss_pred             eCCEEEEEECccCcEEEEEEC--CC--CceEEecCCC-EEEEECCCCeEEEEcCCCCe----EEEEEEeccCCccccccc
Confidence             89999999999999999872  22  2233445665 55555557889999998642    2333222  12   2344


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .+.|.  ++.+.+..-.++.|.+.|..+++.+..+.................-.+.++|+|+++++ +++|
T Consensus       176 ELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l-fVTG  243 (262)
T 3nol_A          176 ELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL-FVTG  243 (262)
T ss_dssp             EEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE-EEEE
T ss_pred             eeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE-EEEC
Confidence            57775  56555555568899999999999998887532111100000122456889999998875 4555

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.16  E-value=1e-06  Score=84.81  Aligned_cols=278  Identities=12%  Similarity=0.064  Sum_probs=175.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-------CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-------HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ...|.++...+++. |.+|+.++-+.+||..+++.......       ....|.++...+++   .|..|+.+| |.+||
T Consensus       214 ~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lWigt~~G-l~~~~  288 (795)
T 4a2l_A          214 TKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN---RLWIGTFND-LNIYH  288 (795)
T ss_dssp             CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS---CEEEEESSC-EEEEE
T ss_pred             CCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC---CEEEEeCCh-hheEc
Confidence            45688888888775 55566554589999877654332211       23569999988777   566666664 88999


Q ss_pred             ccCCeEEEEEEc-------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee------cccCCeeEEEEec
Q 016457          111 TRSFHEVWSVTA-------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE------SHVEDVTQVHFVP  177 (389)
Q Consensus       111 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~  177 (389)
                      ..+++.......       ....|.++...+ .+.+.+++.++-|..|+..+.... .+..      .....|.++...+
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECT
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECC
Confidence            877665432211       135799999884 556777887788999987655322 2210      1234689999888


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCCCCCCccceeee---------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          178 NNQNKVVSASVDGLICTFDTGGDINDDDLLESVI---------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      ++  .|..|+.++-|..||..++.     ...+.         .....|.+++.. .++..|.+|+.++-|.+||..+++
T Consensus       367 ~g--~lWiGt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          367 DK--NLWIGTNDGGLNLYNPITQR-----FTSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             TS--CEEEEESSSCEEEECTTTCC-----EEEECCC------CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CC--CEEEEECCCCeEEEcCCCCc-----EEEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeCCCCc
Confidence            87  46678888789999987542     11111         123568888877 566657888887889999988775


Q ss_pred             eeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec------cccee
Q 016457          249 NVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG------GHTAV  322 (389)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~------~h~~~  322 (389)
                      ... +......       .....|.++...++|.  +.+ |+.+| |.+|+..+++.       ..+..      .+...
T Consensus       439 ~~~-~~~~~~~-------l~~~~v~~i~~d~~g~--lwi-gt~~G-l~~~~~~~~~~-------~~~~~~~~~~~~~~~~  499 (795)
T 4a2l_A          439 VEN-FNQRNSQ-------LVNENVYAILPDGEGN--LWL-GTLSA-LVRFNPEQRSF-------TTIEKEKDGTPVVSKQ  499 (795)
T ss_dssp             EEE-ECTTTSC-------CSCSCEEEEEECSSSC--EEE-EESSC-EEEEETTTTEE-------EECCBCTTCCBCCCCC
T ss_pred             EEE-eecCCCC-------cCCCeeEEEEECCCCC--EEE-EecCc-eeEEeCCCCeE-------EEccccccccccCCce
Confidence            433 3211000       0235788888888775  333 33444 88898877654       22210      12245


Q ss_pred             eeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          323 VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       323 v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      |.++         ..+++|.+.+...  +-|..|+...
T Consensus       500 i~~i---------~~d~~g~lWigt~--~Gl~~~~~~~  526 (795)
T 4a2l_A          500 ITTL---------FRDSHKRLWIGGE--EGLSVFKQEG  526 (795)
T ss_dssp             EEEE---------EECTTCCEEEEES--SCEEEEEEET
T ss_pred             EEEE---------EECCCCCEEEEeC--CceEEEeCCC
Confidence            6777         6677777655544  4477777654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.13  E-value=6.2e-07  Score=86.36  Aligned_cols=281  Identities=10%  Similarity=0.039  Sum_probs=173.7

Q ss_pred             eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           41 VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      |.++...+++. |.+|+.++.|..|+..+++..... ..+...|.++...+++   .|..|+.++-|..||..+++....
T Consensus       175 i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---RIWVATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---EEEEEEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---CEEEEECCCCeEEEeCCCCeEEEe
Confidence            88888888775 555666556889998776543321 1234678888887776   566666554588999887655432


Q ss_pred             EEc-------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee------cccCCeeEEEEecCCCCeEEEE
Q 016457          120 VTA-------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE------SHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       120 ~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      ...       ....|.++...++ +.+.+++.+ -|.+||..+++.......      .....|.++...++|  .|..|
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWig  326 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQ-NRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLG  326 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTT-SCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEE
T ss_pred             ecCCCCccccCCCeEEEEEEcCC-CCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEE
Confidence            221       1356999998854 456666655 688999876643322110      123569999999887  46778


Q ss_pred             eCCCcEEEEecCCCCCCCccceeee-------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVI-------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL  259 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  259 (389)
                      +.++-|..|+..+..     ...+.       -....|.++... .++ .|.+|+.++-|..|+..+++...........
T Consensus       327 t~~~Gl~~~~~~~~~-----~~~~~~~~~~~~l~~~~V~~i~~d-~~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~  399 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNR-----FKNIRNIPYKNSLSDNVVSCIVED-KDK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDES  399 (795)
T ss_dssp             ESSSCEEEECGGGGS-----SEEECCCTTSSSCSCSSEEEEEEC-TTS-CEEEEESSSCEEEECTTTCCEEEECCC----
T ss_pred             ECCCCeEEeCCCccc-----ceEEcCCCCCCCCCCCeeEEEEEC-CCC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCc
Confidence            877889999876431     11111       123457888776 444 4777888888999998766543322111000


Q ss_pred             c-cCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec----ccceeeeeccCCCcccC
Q 016457          260 A-SDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG----GHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       260 ~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~  334 (389)
                      . ..     ....|.++...+++.  .|..|+.++-|..|+..+++.       ..+..    .+...|.++        
T Consensus       400 ~~~l-----~~~~v~~i~~d~~g~--~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i--------  457 (795)
T 4a2l_A          400 ARGI-----GSNNIKAVYVDEKKS--LVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAI--------  457 (795)
T ss_dssp             --CC-----SCSCEEEEEEETTTT--EEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEE--------
T ss_pred             ccCC-----CCccEEEEEEcCCCC--EEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEE--------
Confidence            0 00     235688888888775  356677767799999887764       22221    123456677        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       ..+++|.+.+... + -|.+|+....
T Consensus       458 -~~d~~g~lwigt~-~-Gl~~~~~~~~  481 (795)
T 4a2l_A          458 -LPDGEGNLWLGTL-S-ALVRFNPEQR  481 (795)
T ss_dssp             -EECSSSCEEEEES-S-CEEEEETTTT
T ss_pred             -EECCCCCEEEEec-C-ceeEEeCCCC
Confidence             6666776555443 4 4777776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.12  E-value=4.6e-08  Score=78.65  Aligned_cols=189  Identities=10%  Similarity=0.114  Sum_probs=126.7

Q ss_pred             eeeeec--CcceEEEeecCCCCeEEEEecCC--eEEEEeCCCceeeeeecCCCCcEEE--EEEeCCCCCCEEEEEecCCe
Q 016457           32 IQTNFG--DDYVFEIVPKNDWSLMAVSLSTN--VVKLYSPVTGQYSGECKGHSSTVNQ--ISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        32 ~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~--i~~~~~~~~~~l~s~~~dg~  105 (389)
                      +.++.+  ..-...+.|+ ++.+..+.+.+|  .|+++|+++++.+..+.-.. ....  ++..  +. .+.+..-.++.
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~-~ly~ltw~~~~  108 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KD-KIVGLTWKNGL  108 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TT-EEEEEESSSSE
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CC-EEEEEEeeCCE
Confidence            444544  4445788898 666666666666  89999999999988876432 3333  4443  42 34445556889


Q ss_pred             EEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-cc---CCeeEEEEecCCCC
Q 016457          106 IRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-HV---EDVTQVHFVPNNQN  181 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~  181 (389)
                      +.++|..+.+.+.++.... .=..++  ++++.|+.+..++.|.++|..+.+.+.++.-. ..   ..++.+.|. +|. 
T Consensus       109 v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-  183 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-  183 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-
T ss_pred             EEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-
Confidence            9999999999999998743 223444  36788888777889999999999988877621 12   234567776 563 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeee------------ccCCceeeEEEecCCCcEEEEEec
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVI------------NVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      +++..-.++.|.+.|..++.    .+..+.            ......+.|+++| +.+.|++.+.
T Consensus       184 lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTGK  244 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEET
T ss_pred             EEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEECC
Confidence            66666578899999999764    111111            1124568999995 4445555444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.11  E-value=3.5e-07  Score=84.12  Aligned_cols=200  Identities=13%  Similarity=0.058  Sum_probs=125.5

Q ss_pred             CCeEEEEec-CCeEEEEeC-CCceeeeeecCCCCc-----------EEEEEEeCCCC--CCEEEEEecCCeEEEEEccCC
Q 016457           50 WSLMAVSLS-TNVVKLYSP-VTGQYSGECKGHSST-----------VNQISFSGPST--PHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        50 ~~~l~~~~~-d~~i~iw~~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~~--~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      +..+++++. ++.|.-+|. .+|+.+..+......           ...+++.|.+.  +..|+.++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446777777 789999999 899988777532210           12345543331  123888889999999999999


Q ss_pred             eEEEEEEcCCC----CeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccC---------------
Q 016457          115 HEVWSVTAGSQ----EIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVE---------------  168 (389)
Q Consensus       115 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~---------------  168 (389)
                      +.+........    .+.+ -.+  .++.+++++.      ++.|+.+|.++++.+.++......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            99988775421    2221 122  2456666653      799999999999998776621110               


Q ss_pred             ----------------------CeeEEEEecCCCCeEEEEeCCC----------------cEEEEecCCCCCCCccceee
Q 016457          169 ----------------------DVTQVHFVPNNQNKVVSASVDG----------------LICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       169 ----------------------~v~~~~~~~~~~~~l~~~~~d~----------------~i~i~d~~~~~~~~~~~~~~  210 (389)
                                            .-..+++.+... +++.++.++                .|.-+|.++++..  -..+.
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~--W~~q~  296 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK--FGYQK  296 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE--EEEES
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee--eEeec
Confidence                                  001356667764 777776653                7889999876411  11111


Q ss_pred             eccCC----ceee-EEEec--CCC---cEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          211 INVGT----SVGK-VGFFG--ETN---KHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       211 ~~~~~----~i~~-~~~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      ..|..    .... +.+..  .++   ..++.++.+|.++++|..+++.+....
T Consensus       297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            11111    0111 11210  245   567788899999999999999887665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.11  E-value=2e-07  Score=79.45  Aligned_cols=242  Identities=10%  Similarity=0.030  Sum_probs=146.0

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC--------------------CCCcEEEEEEeC-CCCCCEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG--------------------HSSTVNQISFSG-PSTPHVL   97 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------------~~~~v~~i~~~~-~~~~~~l   97 (389)
                      ....++++++++++++++..++.|..|+..+++.. .+..                    ....+..+++.+ ++   .|
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g---~l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN---QL   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT---EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC---cE
Confidence            34567889999988888888999999998765432 2210                    113578899997 55   56


Q ss_pred             EEEecCCeEEEEEccCCeEEEEEEcC-----CCCeEEEEEeC-CCCeEEEeec-----------------CCeEEEEECc
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWSVTAG-----SQEIFCFSFGG-STDYLLAAGC-----------------GSQIQFWDWR  154 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~  154 (389)
                      +.+...+.|..+|..++.. ..+...     ......+++.+ ++...++...                 ++.|..+|..
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            6665556688888765532 222211     23578899998 6654444321                 3678889987


Q ss_pred             CCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      +++......  .......|+++|++..++++-+..+.|..|++.+...  .....+..... ...+++. +++.+.++..
T Consensus       174 ~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~~~g-P~gi~~d-~~G~l~va~~  247 (322)
T 2fp8_A          174 TKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--GTAEVLVKIPN-PGNIKRN-ADGHFWVSSS  247 (322)
T ss_dssp             TTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--TCEEEEEECSS-EEEEEEC-TTSCEEEEEE
T ss_pred             CCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--CccceEEeCCC-CCCeEEC-CCCCEEEEec
Confidence            665433222  2234567999999852344445678999999884321  11111111223 6788888 6676555554


Q ss_pred             c----------CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          235 H----------IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       235 ~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .          .+.|..+|. .++.+..+......        ....+..+++ .++ . +.++...++.|.++++...
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~--------~~~~~~~~~~-~~g-~-L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPF--------AGEHFEQIQE-HDG-L-LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTT--------TTSCCCEEEE-ETT-E-EEEECSSCSEEEEEEC---
T ss_pred             CcccccccCCCccEEEEECC-CCCEEEEEECCCCC--------ccccceEEEE-eCC-E-EEEeecCCCceEEEecccc
Confidence            4          467888886 47777666542100        0133455555 333 3 4455556788999988644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.10  E-value=5e-08  Score=78.40  Aligned_cols=188  Identities=8%  Similarity=0.048  Sum_probs=128.9

Q ss_pred             eeeeeec--CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE--EEEeCCCCCCEEEEEecCCeE
Q 016457           31 SIQTNFG--DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ--ISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        31 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~--i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      .+.++..  ..-...+.|+. +.+..+.+.+|.|+++|+++++.+..+ - ......  +++.  +. .+.+..-.++.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~-~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GE-RLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SS-CEEEEESSSCEE
T ss_pred             EEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CC-EEEEEEccCCEE
Confidence            3445544  44456888874 566677777889999999999988877 2 233333  5554  32 456666678999


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee-ccc---CCeeEEEEecCCCCe
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE-SHV---EDVTQVHFVPNNQNK  182 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~~  182 (389)
                      .+||..+.+.+.++.... .-..+++  +++.|+.+..++.|.++|..+.+.+.++.- .+.   ..++.+.|. +|. +
T Consensus       119 ~V~D~~Tl~~~~ti~~~~-eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-l  193 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSG-EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-I  193 (268)
T ss_dssp             EEEETTTTEEEEEEECSS-CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred             EEEECCcCcEEEEEeCCC-ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-E
Confidence            999999999999998643 3345554  578888887789999999999998887762 122   234667777 563 6


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeee-------------ccCCceeeEEEecCCCcEEEEE
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVI-------------NVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      ++....+..|.+.|..+++    .+..+.             ......+.|++.|....++++|
T Consensus       194 yanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6666578899999999764    111111             1224668999995555555554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.09  E-value=1.9e-07  Score=85.98  Aligned_cols=151  Identities=15%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             CCeEEEEecCCeEEEEeCCCceeeeeecCCCC----cEE-EEEEeCC---CCCCEEEEEe------cCCeEEEEEccCCe
Q 016457           50 WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSS----TVN-QISFSGP---STPHVLHSCS------SDGTIRAWDTRSFH  115 (389)
Q Consensus        50 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----~v~-~i~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~  115 (389)
                      +..+++++.++.|.-+|..+|+.+........    .+. ......+   +. ..+++++      .++.|..+|..+++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~-~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGK-VLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCC-EEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCc-EEEEEeccccccCCCCEEEEEECCCCC
Confidence            45788888899999999999998877653221    111 1111112   21 1566654      37899999999999


Q ss_pred             EEEEEEcCCCCe-----------------------------------------EEEEEeCCCCeEEEeec----------
Q 016457          116 EVWSVTAGSQEI-----------------------------------------FCFSFGGSTDYLLAAGC----------  144 (389)
Q Consensus       116 ~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~~~~~----------  144 (389)
                      .+.........+                                         ..++++|..+.++++..          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            988765421111                                         12456667777777653          


Q ss_pred             ----------C----CeEEEEECcCCceeeeeeecccC-----CeeE-EEEe---cCCC--CeEEEEeCCCcEEEEecCC
Q 016457          145 ----------G----SQIQFWDWRNKKQVACLEESHVE-----DVTQ-VHFV---PNNQ--NKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       145 ----------d----~~i~iwd~~~~~~~~~~~~~~~~-----~v~~-~~~~---~~~~--~~l~~~~~d~~i~i~d~~~  199 (389)
                                |    +.|..+|.++++.+..++..+..     .+.. +.+.   .+|+  ..++.++.+|.++++|..+
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    58999999999999887622211     1111 2222   3552  2688899999999999987


Q ss_pred             CC
Q 016457          200 DI  201 (389)
Q Consensus       200 ~~  201 (389)
                      ++
T Consensus       356 G~  357 (582)
T 1flg_A          356 GK  357 (582)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.03  E-value=6.2e-07  Score=71.51  Aligned_cols=189  Identities=10%  Similarity=0.048  Sum_probs=125.5

Q ss_pred             eeeeec--CcceEEEeecCCCCeEEEEecC--CeEEEEeCCCceeeeeecCCCCc-EEEEEEeCCCCCCEEEEEecCCeE
Q 016457           32 IQTNFG--DDYVFEIVPKNDWSLMAVSLST--NVVKLYSPVTGQYSGECKGHSST-VNQISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        32 ~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      +.++.+  ..-.-.+.|++ +.+..+.+..  ..|+.+|+.+++.+..+.-.... --.+++.. +  .+....-.++.+
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~--~ly~ltw~~~~v   87 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-D--RLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-T--EEEEEESSSSEE
T ss_pred             EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-C--EEEEEEeeCCEE
Confidence            344444  45566889987 5555555554  48999999999998877543221 12344442 2  455556678899


Q ss_pred             EEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-cc---CCeeEEEEecCCCCe
Q 016457          107 RAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-HV---EDVTQVHFVPNNQNK  182 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~  182 (389)
                      .+||..+.+.+.++..... =..++.  +++.|+++..++.|.++|..+.+.+.++.-. +.   ..++.+.+. +|. +
T Consensus        88 ~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l  162 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L  162 (243)
T ss_dssp             EEEETTTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred             EEEECCcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence            9999999999999987533 345554  6778888777899999999999888877621 21   245566766 453 5


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeee-------------ccCCceeeEEEecCCCcEEEEE
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVI-------------NVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      ++..-.+..|.+.|..++..    +..+.             ......+.|++.|..+.++++|
T Consensus       163 yanvw~s~~I~vIDp~tG~V----~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKV----VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBE----EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCE----EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            55555678999999997641    11111             1234668999995444444444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.01  E-value=1.6e-06  Score=79.81  Aligned_cols=195  Identities=10%  Similarity=-0.007  Sum_probs=120.6

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCCc---------EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSST---------VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      ..+++++.++.|.-+|..+|+.+..+......         -..+++. +   ..++.++.|+.|..+|..+|+.+..+.
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~---~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-G---DKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-T---TEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-C---CEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            45666666455999999999998877543221         0122332 3   378888899999999999999998887


Q ss_pred             cCCC----CeE-EEEEeCC---CC-eEEEeec------CCeEEEEECcCCceeeeeeecccC------------------
Q 016457          122 AGSQ----EIF-CFSFGGS---TD-YLLAAGC------GSQIQFWDWRNKKQVACLEESHVE------------------  168 (389)
Q Consensus       122 ~~~~----~v~-~~~~~~~---~~-~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~------------------  168 (389)
                      ....    .+. .-.....   +. .+++++.      ++.|..+|.++++.+.+... ...                  
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~-~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF-VEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES-STTCEEEETTEEEEESSCTTC
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC-CccccccccCccccccccccc
Confidence            5421    111 1111101   22 5666543      78999999999998876541 100                  


Q ss_pred             -----------------------CeeEEEEecCCCCeEEEEeC--------------------C----CcEEEEecCCCC
Q 016457          169 -----------------------DVTQVHFVPNNQNKVVSASV--------------------D----GLICTFDTGGDI  201 (389)
Q Consensus       169 -----------------------~v~~~~~~~~~~~~l~~~~~--------------------d----~~i~i~d~~~~~  201 (389)
                                             .-..+++.|+.. +++.+..                    |    +.|.-+|..+++
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~  302 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE  302 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence                                   002356777764 6666653                    2    579999998774


Q ss_pred             CCCccceeee--ccCC----ceee-EEEec--CCC---cEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          202 NDDDLLESVI--NVGT----SVGK-VGFFG--ETN---KHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       202 ~~~~~~~~~~--~~~~----~i~~-~~~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      .    +-.+.  .|..    .+.. +.+..  .++   ..++.++.+|.++++|..+++.+..+..
T Consensus       303 ~----~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          303 V----KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             E----EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             E----EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            1    22211  1210    1111 22221  245   4788899999999999999998877654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.01  E-value=8.1e-07  Score=70.85  Aligned_cols=201  Identities=12%  Similarity=0.089  Sum_probs=131.4

Q ss_pred             eeeeeecCCCC--cEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeEEEEEEcCCCCe-EEEEEeCCCCeEEEeec-
Q 016457           71 QYSGECKGHSS--TVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHEVWSVTAGSQEI-FCFSFGGSTDYLLAAGC-  144 (389)
Q Consensus        71 ~~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~-  144 (389)
                      +.+.++. |..  -...+.|++ +  .++.+.+.+|  .|+.+|+.+++.+..+....... ..+++.  ++.++.... 
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~--~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-G--HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T--EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             EEEEEcC-CCCccccccEEEEC-C--EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence            4455553 543  466899986 4  5777777654  89999999999999888653322 344554  566666654 


Q ss_pred             CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cC---Cceee
Q 016457          145 GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VG---TSVGK  219 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~---~~i~~  219 (389)
                      ++.+.+||..+.+.+.++..  ...-..++  +++. .|+.+..++.|.++|..+..    .+..+..  +.   ..++.
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~--~~~Gwglt--~dg~-~L~vSdgs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRY--PGEGWALT--SDDS-HLYMSDGTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEEC--SSCCCEEE--ECSS-CEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEE
T ss_pred             CCEEEEEECCcCcEEEEEeC--CCCceEEe--eCCC-EEEEECCCCeEEEEeCCCCe----EEEEEEEccCCccccccee
Confidence            89999999999999999972  22223444  5565 55555668899999998642    2333322  22   23455


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc-cCCCCCceeeecccCCCCeEEEEEe
Q 016457          220 VGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW-TLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      +.+.  ++..++..-.+..|.+.|..+++.+..+....-.....- .....+-.+.++++|+++++ +++|
T Consensus       155 Le~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l-fVTG  222 (243)
T 3mbr_X          155 LEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL-FVTG  222 (243)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE-EEEE
T ss_pred             eEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE-EEEC
Confidence            6664  565555555678999999999999988874322111100 00122467889999988864 5666

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.98  E-value=4.3e-06  Score=70.60  Aligned_cols=231  Identities=9%  Similarity=-0.001  Sum_probs=138.4

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-C-eEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-G-TIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~  115 (389)
                      ......++|+++++++++-..++.|..||... +....+. .......+++.+++  +++++.... + .|..++..+++
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG--~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCC--cEEEEeccCCcceEEEEcCCCCe
Confidence            35577899999998666666789999999764 3333333 23568899999998  555554332 2 46667777776


Q ss_pred             EEEEEEcC-CCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCce-eeeee--------ecccCCeeEEEEecCCCCeEE
Q 016457          116 EVWSVTAG-SQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQ-VACLE--------ESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       116 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~--------~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      ........ ......++.. .+..++++. .++.|..+|...++. +....        ...-.....|  +|++..+++
T Consensus       107 ~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            54333322 2234455554 345555555 478999999865421 11100        0111234455  787754556


Q ss_pred             EEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          185 SASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      +-...+.|..||+.... .......+ ........+++. +++.++++....+.|.+++.. ++.........       
T Consensus       184 ~d~~~~~I~~~~~~~~g-~~~~~~~~-~~~~~P~gi~vd-~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-------  252 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTD-KPGEPEIF-VEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-------  252 (306)
T ss_dssp             EETTTTEEEEEEBCTTS-CBCCCEEE-EESCCCSSEEEB-TTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-------
T ss_pred             EeCCCCEEEEEEeCCCC-CCCccEEE-eccCCCCCeEEC-CCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-------
Confidence            66677899999997411 11111111 112356778888 677776666667899999975 55432211110       


Q ss_pred             cCCCCCceeeeccc---CCCCeEEEEEe
Q 016457          265 TLDDVDYFVDCHYP---GEGENLWVIGG  289 (389)
Q Consensus       265 ~~~~~~~i~~~~~~---~~~~~~~l~~g  289 (389)
                         ......+++|.   ++++.+|+.+.
T Consensus       253 ---~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          253 ---GVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ---TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ---ccCCceEEEEecccCCCCEEEEECC
Confidence               12457889998   78886665544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.96  E-value=8.8e-06  Score=69.97  Aligned_cols=242  Identities=9%  Similarity=-0.050  Sum_probs=149.3

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      +...|.+..++. +|+.+. ...|+..++...+....+.. ...+..++|.+... .++++-...+.|..+++.......
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~-~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEecccc-EEEEEeccCCceEEEecCCCCceE
Confidence            345566666644 555444 45688888876554444443 34578999997652 445555567889999987655444


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-CcEEEEe
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-GLICTFD  196 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d  196 (389)
                      .+.........+++.+.++.|+.+.. .+.|.+.++........+. ........|+++|.+..++++-... +.|..++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            34333345678999877777776655 6899999987543322232 3345678999999765455555555 7899998


Q ss_pred             cCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457          197 TGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       197 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      +....     ...+. ..-.....+++++.++.+.++-+..+.|..+++........+..            .......+
T Consensus       189 ~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~------------~~~~P~gi  251 (349)
T 3v64_C          189 MDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------------GLPHPFAI  251 (349)
T ss_dssp             TTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------------SCSSEEEE
T ss_pred             CCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC------------CCCCceEE
Confidence            87431     11111 12335688999965666666666678999999864332222221            11344566


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++.  +.. +.++-...+.|..++..+++.
T Consensus       252 av~--~~~-ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          252 TVF--EDS-LYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EEE--TTE-EEEEETTTTEEEEEETTTCCS
T ss_pred             EEE--CCE-EEEecCCCCeEEEEEccCCCc
Confidence            663  233 345555677888888555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=2.8e-07  Score=74.13  Aligned_cols=199  Identities=13%  Similarity=0.099  Sum_probs=130.7

Q ss_pred             eeeeeecCCCC--cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCe--EEEEEeCCCCeEEEeec-C
Q 016457           71 QYSGECKGHSS--TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEI--FCFSFGGSTDYLLAAGC-G  145 (389)
Q Consensus        71 ~~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-d  145 (389)
                      +.+.++. |..  -...+.|.. +  .++.+.+.+|.|+++|+.+++.+..+ .. ...  ..+++  .++.++.... +
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~--~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~g~~Ly~ltw~~  115 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-G--HFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--DGERLYQLTWTE  115 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T--EEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--CSSCEEEEESSS
T ss_pred             EEEEEEc-CCCccccceEEEEC-C--EEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--eCCEEEEEEccC
Confidence            4455553 443  347888873 4  58888889999999999999988887 43 333  34555  4556666554 8


Q ss_pred             CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cCC---ceeeE
Q 016457          146 SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VGT---SVGKV  220 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~---~i~~~  220 (389)
                      +.+.+||..+.+.+.++. . ...-..++  +++. .|+.+..++.|.++|..+.+    .+..+..  ...   .++.+
T Consensus       116 ~~v~V~D~~Tl~~~~ti~-~-~~eGwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~----v~~~I~V~~~g~~v~~lNeL  186 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTR-Y-SGEGWGLC--YWNG-KLVRSDGGTMLTFHEPDGFA----LVGAVQVKLRGQPVELINEL  186 (268)
T ss_dssp             CEEEEEETTTTEEEEEEE-C-SSCCCCEE--EETT-EEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEE
T ss_pred             CEEEEEECCcCcEEEEEe-C-CCceeEEe--cCCC-EEEEECCCCEEEEEcCCCCe----EEEEEEeCCCCccccccccc
Confidence            999999999999999987 2 22223444  4564 66666678999999998642    2333222  222   34567


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccC-CccCCCCCceeeecccCCCCeEEEEEe
Q 016457          221 GFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASD-SWTLDDVDYFVDCHYPGEGENLWVIGG  289 (389)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g  289 (389)
                      .|.  ++.+.+..-.++.|.+.|..+++.+..+......... .......+-.+.++++|+++++ ++||
T Consensus       187 e~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl-fVTG  253 (268)
T 3nok_A          187 ECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI-FMTG  253 (268)
T ss_dssp             EEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE-EEEE
T ss_pred             EEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE-EEeC
Confidence            775  5555555546789999999999999888743111000 0001122467889999988874 5666

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.95  E-value=5.7e-06  Score=72.25  Aligned_cols=239  Identities=8%  Similarity=-0.052  Sum_probs=147.8

Q ss_pred             EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      .|.+..+.. +|+.+. ...|+.+++...+....+.. ......++|.+.+. .++++-...+.|..+++........+.
T Consensus        80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             eECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCC-eEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            355555533 454444 46788888876554444443 34578999997652 455555567889999987665444444


Q ss_pred             cCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-CcEEEEecCC
Q 016457          122 AGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-GLICTFDTGG  199 (389)
Q Consensus       122 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~  199 (389)
                      ........+++.+.++.|+.+.. .+.|.+.++........+. ........|+++|.+..++++-... +.|..+++..
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            33345678899877777776655 6789998876443332232 3335678999999775455554445 7899998874


Q ss_pred             CCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeeccc
Q 016457          200 DINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYP  278 (389)
Q Consensus       200 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (389)
                      ..     ...+. ..-.....+++++.++.++++-+..+.|..+|+........+..            .......+++.
T Consensus       235 ~~-----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------------~~~~P~giav~  297 (386)
T 3v65_B          235 SG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------------GLPHPFAITVF  297 (386)
T ss_dssp             CS-----CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------------SCSSEEEEEEE
T ss_pred             CC-----cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------------CCCCceEEEEE
Confidence            31     22221 22335688999966666666666778899999864333222221            11344566663


Q ss_pred             CCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          279 GEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                        +.. +.++-...+.|..++..+++.
T Consensus       298 --~~~-ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          298 --EDS-LYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             --TTE-EEEEETTTTEEEEEETTTCCS
T ss_pred             --CCE-EEEeeCCCCeEEEEECCCCcc
Confidence              233 445666778888888655543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=2.6e-06  Score=81.84  Aligned_cols=282  Identities=13%  Similarity=0.082  Sum_probs=169.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec--------------CCCCcEEEEEEeCCCCCCEEEEEecC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK--------------GHSSTVNQISFSGPSTPHVLHSCSSD  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~~~l~s~~~d  103 (389)
                      ...|.++...++| .|.+|+..+-|.+++..+++......              -....|.++...+++   .|..|+.+
T Consensus       257 ~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g---~lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN---NIWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC---CEEEEEBS
T ss_pred             CceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC---CEEEEecC
Confidence            4568899888887 56667765668889987654322111              134579999888776   57778877


Q ss_pred             CeEEEEEccCCeEEEEEE------c---CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee--ecccCCeeE
Q 016457          104 GTIRAWDTRSFHEVWSVT------A---GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--ESHVEDVTQ  172 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~  172 (389)
                      +-|..++..+........      .   ....|.++...+ .+.+.+++.++-|..||..++.......  ......|.+
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            778999887554322111      0   235688998874 4567777767778999977543322111  123456889


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee---ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          173 VHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI---NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      +...+++  .|..|+.++-+..+|..++.     ...+.   .....|.++... .++ .|..++. +-|..||..+++.
T Consensus       412 i~~d~~g--~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d-~~g-~lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          412 SLKDSEG--NLWFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYED-KNK-KIWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             EEECTTS--CEEEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEEC-TTS-EEEEEET-TEEEEEESSSSSC
T ss_pred             EEECCCC--CEEEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEEC-CCC-CEEEEEC-CceEEEeCCCCeE
Confidence            9888777  46667777779999987432     11111   123567787776 444 4666666 5688999887654


Q ss_pred             eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecc---cceeeeec
Q 016457          250 VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGG---HTAVVRSV  326 (389)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~  326 (389)
                      ........ .  .    .....|.++...++|.  + ..|+.++-|..|+..+++.       ..+...   ....|.++
T Consensus       482 ~~~~~~~~-~--~----~~~~~i~~i~~d~~g~--l-Wigt~~~Gl~~~~~~~~~~-------~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          482 IHHYDTSN-S--Q----LLENFVRSIAQDSEGR--F-WIGTFGGGVGIYTPDMQLV-------RKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             CEEECTTT-S--S----CSCSCEEEEEECTTCC--E-EEEESSSCEEEECTTCCEE-------EEECTTTTCSCSCEEEE
T ss_pred             EecccCcc-c--c----cccceeEEEEEcCCCC--E-EEEEcCCCEEEEeCCCCeE-------EEccCCCCCCCCeeEEE
Confidence            43222110 0  0    0135688888888775  3 3344433477788766543       222211   12356666


Q ss_pred             cCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          327 LPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       327 ~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                               ..+++|.+.++.. +|.|..|+....
T Consensus       545 ---------~~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          545 ---------YRSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             ---------EECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             ---------EECCCCCEEEEEC-CCceEEECCCCC
Confidence                     6667777655444 666577776543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.94  E-value=1e-05  Score=68.62  Aligned_cols=227  Identities=11%  Similarity=0.058  Sum_probs=143.3

Q ss_pred             CCCeEEEEecCc--eeeeeecCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCC----ceeeeeecCCCCcEEEEEEeCC
Q 016457           19 NVNSIKRFGLKN--SIQTNFGDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVT----GQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        19 ~~~~i~~w~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      ....|+..++..  ....+.....+.+++|++++..|+.+ ..++.|..+++..    ......+...-.....+++.+.
T Consensus         8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            445688888763  22223335667899999876555555 4468999999875    2222223222245578888865


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC--CeEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG--SQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +. .++++-...+.|.+.++........+.........++++|.++.|+.+...  +.|...++. +.....+....-..
T Consensus        88 ~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~  165 (316)
T 1ijq_A           88 HS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW  165 (316)
T ss_dssp             TT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred             CC-eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence            42 455665677899999987544433344344678899999988888877653  688888875 33333332123345


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      ...|++++++..++++-+..+.|..+|+....     ...+..   .-.....+++.  .+.++++-...+.|..++..+
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----eEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence            78999998876455555567789999998421     222211   12345677775  355666666778999999877


Q ss_pred             CceeEEee
Q 016457          247 GQNVASFE  254 (389)
Q Consensus       247 ~~~~~~~~  254 (389)
                      ++.+..+.
T Consensus       239 g~~~~~i~  246 (316)
T 1ijq_A          239 GSDVNLLA  246 (316)
T ss_dssp             CCCCEEEE
T ss_pred             CcceEEEe
Confidence            77665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.92  E-value=1.6e-05  Score=67.39  Aligned_cols=232  Identities=8%  Similarity=-0.061  Sum_probs=140.6

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC----CeEEEEEEcCCCCe
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS----FHEVWSVTAGSQEI  127 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v  127 (389)
                      +|+.+. ...|+..|+.+.+....+. .......++|.+.+. .++++-...+.|..+++..    ......+...-...
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~-~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCC-EEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            344444 3568999988776555444 345678999998652 4555555678999999875    22222233223456


Q ss_pred             EEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-CcEEEEecCCCCCCCc
Q 016457          128 FCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-GLICTFDTGGDINDDD  205 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~  205 (389)
                      ..+++.+.++.++.+.. .+.|.++|+........+. ........++++|.+..++++.... +.|..+++....    
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----  154 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----  154 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC----
Confidence            78999876777776644 7899999987543322222 3345678999999765344444333 688888887321    


Q ss_pred             cceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          206 LLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       206 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                       ...+. ..-.....+++++.++.++++-+..+.|..+|+.. .....+....         ........+++.  +.. 
T Consensus       155 -~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~---------~~~~~P~giav~--~~~-  220 (316)
T 1ijq_A          155 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE---------KRLAHPFSLAVF--EDK-  220 (316)
T ss_dssp             -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT---------TTTSSEEEEEEE--TTE-
T ss_pred             -eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecC---------CccCCcEEEEEE--CCE-
Confidence             11121 12345789999955565666666677999999874 3333332210         011334566664  343 


Q ss_pred             EEEEecCCceEEEEEeccCCc
Q 016457          285 WVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       285 ~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +.++-...+.|..++..+++.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEECCCCeEEEEeCCCCcc
Confidence            345666778899998766654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=5.1e-06  Score=79.88  Aligned_cols=278  Identities=14%  Similarity=0.029  Sum_probs=166.2

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC-------CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEc
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG-------HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT  111 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  111 (389)
                      ..|.++...+++. |.+|+.+ -+.+||..+++.......       ....|.++...+++   .|..|+..+-|.++|.
T Consensus       211 ~~i~~i~~d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN---KLWIATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS---EEEEEESSSCEEEEET
T ss_pred             CceeEEEEcCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC---CEEEEeCCCCeEEECC
Confidence            4688888888875 4455555 689999876654322111       23569999888776   6777777456888998


Q ss_pred             cCCeEEEEEE--------------cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee---------ecccC
Q 016457          112 RSFHEVWSVT--------------AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE---------ESHVE  168 (389)
Q Consensus       112 ~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~  168 (389)
                      .++.......              .....|.++...+ .+.+.+++.++-|..++..+..... +.         .....
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNNIWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNK  363 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCCEEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSS
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCCEEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCc
Confidence            7665432221              1245789999884 5567788877888999877543221 11         01235


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccce-eeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLE-SVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .|.++...+++  .|..|+.++-|..||..++..  .... ........|.++... .++ .|.+|+.++-|..++..++
T Consensus       364 ~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d-~~g-~lWigt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          364 VVSSVCDDGQG--KLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKD-SEG-NLWFGTYLGNISYYNTRLK  437 (781)
T ss_dssp             CEEEEEECTTS--CEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEEC-TTS-CEEEEETTEEEEEECSSSC
T ss_pred             ceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEEC-CCC-CEEEEeccCCEEEEcCCCC
Confidence            68999988877  466777677799999874310  0110 001133567888775 444 4667887777889998766


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccc-----cee
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGH-----TAV  322 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h-----~~~  322 (389)
                      +.. .+... .        .....|.++...+++. +  ..|+.. -|..|+..+++.       ..+....     ...
T Consensus       438 ~~~-~~~~~-~--------~~~~~v~~i~~d~~g~-l--wigt~~-Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~  496 (781)
T 3v9f_A          438 KFQ-IIELE-K--------NELLDVRVFYEDKNKK-I--WIGTHA-GVFVIDLASKKV-------IHHYDTSNSQLLENF  496 (781)
T ss_dssp             EEE-ECCST-T--------TCCCCEEEEEECTTSE-E--EEEETT-EEEEEESSSSSC-------CEEECTTTSSCSCSC
T ss_pred             cEE-EeccC-C--------CCCCeEEEEEECCCCC-E--EEEECC-ceEEEeCCCCeE-------EecccCcccccccce
Confidence            433 33211 0        0235688888877764 3  334444 488899887654       2222111     245


Q ss_pred             eeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccC
Q 016457          323 VRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       323 v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~  360 (389)
                      |.++         ..+++|.+.+....+| |..|+.+.
T Consensus       497 i~~i---------~~d~~g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          497 VRSI---------AQDSEGRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             EEEE---------EECTTCCEEEEESSSC-EEEECTTC
T ss_pred             eEEE---------EEcCCCCEEEEEcCCC-EEEEeCCC
Confidence            6666         6677777554433244 55666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.91  E-value=1.1e-05  Score=69.28  Aligned_cols=226  Identities=8%  Similarity=-0.014  Sum_probs=141.1

Q ss_pred             CCeEEEEecCc-eeeeee-cCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           20 VNSIKRFGLKN-SIQTNF-GDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      ...|+..++.. ....+. ....+..++|++....|+.+ ...+.|..+++..+.....+.........+++.+.+. .+
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g-~l  130 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD-KL  130 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT-EE
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC-eE
Confidence            34566666543 222222 24557899999866666555 4578899999876543333332334457888887552 45


Q ss_pred             EEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C-CeEEEEECcCCceeeeeeecccCCeeEEE
Q 016457           97 LHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G-SQIQFWDWRNKKQVACLEESHVEDVTQVH  174 (389)
Q Consensus        97 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  174 (389)
                      +++-...+.|.+.++........+...-.....++++|.++.|+.+.. . +.|..+++... ....+....-.....|+
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLT  209 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEE
Confidence            566666788999998754333333333466789999998888887765 4 78888887643 33333212334578999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          175 FVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      ++|++..++++-...+.|..+|+....     ...+. ........+++.  ++.++++-...+.|..++..+++....+
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~-----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGSH-----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCc-----eEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            998775455665667889999987421     11111 123345677774  3456666666778888886666655554


Q ss_pred             e
Q 016457          254 E  254 (389)
Q Consensus       254 ~  254 (389)
                      .
T Consensus       283 ~  283 (349)
T 3v64_C          283 R  283 (349)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.89  E-value=4.9e-06  Score=72.63  Aligned_cols=227  Identities=8%  Similarity=-0.008  Sum_probs=143.1

Q ss_pred             CCCeEEEEecCc-eeeeee-cCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCC
Q 016457           19 NVNSIKRFGLKN-SIQTNF-GDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH   95 (389)
Q Consensus        19 ~~~~i~~w~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~   95 (389)
                      ....|+..++.. ....+. ....+..++|++.+..|+.+ ...+.|..+++..+.....+.........+++.+.+. .
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g-~  172 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD-K  172 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT-E
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC-e
Confidence            345667666653 222222 35568899999866555544 4578899999876544333332333456788887552 4


Q ss_pred             EEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C-CeEEEEECcCCceeeeeeecccCCeeEE
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G-SQIQFWDWRNKKQVACLEESHVEDVTQV  173 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~  173 (389)
                      ++++-...+.|.+.++........+...-.....++++|.++.|+.+.. . +.|..+++... ....+....-.....|
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGL  251 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeE
Confidence            5566566778888887654433333333467889999998888888765 3 68888887643 3333321233457899


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEE
Q 016457          174 HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVAS  252 (389)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  252 (389)
                      +++|++..++++-+..+.|..+|+....     ...+. ........+++.  ++.++++....+.|..++..+++....
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~-----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSH-----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCS-----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCe-----eEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            9998775456666667889999987421     12221 123345677774  345666666778888888767766655


Q ss_pred             ee
Q 016457          253 FE  254 (389)
Q Consensus       253 ~~  254 (389)
                      +.
T Consensus       325 i~  326 (386)
T 3v65_B          325 IR  326 (386)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.89  E-value=4e-06  Score=71.35  Aligned_cols=237  Identities=9%  Similarity=0.071  Sum_probs=141.7

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC--------------------CCCeEEEEEeCCCCeEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG--------------------SQEIFCFSFGGSTDYLLA  141 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~  141 (389)
                      ...+++|.+++  .+++++..++.|..|+..+++.. .+...                    ...+.++++.+.++.|++
T Consensus        20 ~p~~i~~d~~g--~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTN--KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             CCCCEECCTTC--SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCC--CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            45678898887  67888888999999998765433 23211                    135788999975667777


Q ss_pred             eecCCeEEEEECcCCceeeeee---ec-ccCCeeEEEEec-CCCCeEEEEeC-----------------CCcEEEEecCC
Q 016457          142 AGCGSQIQFWDWRNKKQVACLE---ES-HVEDVTQVHFVP-NNQNKVVSASV-----------------DGLICTFDTGG  199 (389)
Q Consensus       142 ~~~d~~i~iwd~~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------d~~i~i~d~~~  199 (389)
                      +...+.|..+|..++.. ..+.   .+ .......+++.+ +|. ++++-..                 ++.|..||..+
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            76666688898765532 2221   01 113467899999 884 6665432                 36788888764


Q ss_pred             CCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCCCc--eeEEeecccccccCCccCCCCCceeeec
Q 016457          200 DINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKDGQ--NVASFENARSLASDSWTLDDVDYFVDCH  276 (389)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (389)
                      +.     +......-.....++++ ++++.|+++ +..+.|.+|++....  ....+...            .. ...++
T Consensus       175 ~~-----~~~~~~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~------------~g-P~gi~  235 (322)
T 2fp8_A          175 KE-----TTLLLKELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI------------PN-PGNIK  235 (322)
T ss_dssp             TE-----EEEEEEEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC------------SS-EEEEE
T ss_pred             CE-----EEEeccCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC------------CC-CCCeE
Confidence            32     22222222345678998 666655554 566899999987531  11222211            12 56788


Q ss_pred             ccCCCCeEEEEEec---------CCceEEEEEeccCCccccCCCeEEEeccc---ceeeeeccCCCcccCCCCCCCceeE
Q 016457          277 YPGEGENLWVIGGT---------GAGTVGYFPVNYGGAATIGPPEAVLVGGH---TAVVRSVLPMPSVQGRPAQSHGIFG  344 (389)
Q Consensus       277 ~~~~~~~~~l~~g~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~s~~~~~l  344 (389)
                      +.++|. +|++...         ..+.|..++.. ++.      +..+....   -..+..+         ++ .+++++
T Consensus       236 ~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~------~~~~~~~~g~~~~~~~~~---------~~-~~g~L~  297 (322)
T 2fp8_A          236 RNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNI------LEVIPLPPPFAGEHFEQI---------QE-HDGLLY  297 (322)
T ss_dssp             ECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCE------EEEEECCTTTTTSCCCEE---------EE-ETTEEE
T ss_pred             ECCCCC-EEEEecCcccccccCCCccEEEEECCC-CCE------EEEEECCCCCccccceEE---------EE-eCCEEE
Confidence            999886 4554433         14667778764 332      33333111   1123333         33 466666


Q ss_pred             EEecCCCeEEEEeccC
Q 016457          345 WTGGEDGRLCCWLSDD  360 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~  360 (389)
                      ++....+.|..++++.
T Consensus       298 v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          298 IGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECSSCSEEEEEEC--
T ss_pred             EeecCCCceEEEeccc
Confidence            7777788899998763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.86  E-value=7.5e-06  Score=66.27  Aligned_cols=204  Identities=7%  Similarity=0.038  Sum_probs=132.8

Q ss_pred             eeeec-CcceEEEeecCCCCeEE-EEecCCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           33 QTNFG-DDYVFEIVPKNDWSLMA-VSLSTNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      +.+.+ .+.+..++|+|+++.|+ +...++.|...|.. ++.+..+.- -....-.|++.+++  .++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g--~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN--QFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT--EEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC--EEEEEECCCCcEEEE
Confidence            34556 66799999999876555 56668889999987 887777632 22467888998877  566665567889999


Q ss_pred             EccCCe---EEEEEEc------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECc---CCceeeeee------ecccCCee
Q 016457          110 DTRSFH---EVWSVTA------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWR---NKKQVACLE------ESHVEDVT  171 (389)
Q Consensus       110 d~~~~~---~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~------~~~~~~v~  171 (389)
                      ++....   .+.....      .+.....++|+|.++.|+++.......+|.+.   ....+..+.      ..+...+.
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            876543   2233321      24557899999999899888875554555543   111122221      01234578


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-c------CCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-V------GTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      .++++|....+++....++.+.++|.....   .....+.. .      -.....|+|. ++++ |+..++-+.++.|.-
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~d-~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAMD-ASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEEC-TTCC-EEEEETTTEEEEEEC
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEEC-CCCC-EEEEcCCceEEEEEe
Confidence            999999886677777778889999988431   11111111 0      1256789999 6776 555577777766653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.86  E-value=1.5e-05  Score=64.46  Aligned_cols=215  Identities=9%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             eecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEEC
Q 016457           75 ECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDW  153 (389)
Q Consensus        75 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  153 (389)
                      .+.+-.+.+..++|.|++. .++++...++.|...|.. ++.+..+... ......+++.+++..+++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~-~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSN-TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTT-EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCC-EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            4455556799999999863 455567788899999987 8888887643 367889999866654444444788999987


Q ss_pred             cCCce---eeeee-----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-------ccCCcee
Q 016457          154 RNKKQ---VACLE-----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-------NVGTSVG  218 (389)
Q Consensus       154 ~~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~i~  218 (389)
                      .....   +....     .........|+|+|.+. .|+++.......+|.+.. ......+....       ..-..+.
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcc-cccCCceeeecchhhccccccCCce
Confidence            65432   22221     02344568999999985 666666655555555541 11111111111       1123568


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      ++++.|..+.+++.+...+.|..+|.. ++.+..+.-.+......   ......-.++|.++|+ +|| + ++-..+++|
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~---~~~~qpEGia~d~~G~-lyI-v-sE~n~~y~f  249 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLS---HNIKQAEGVAMDASGN-IYI-V-SEPNRFYRF  249 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCS---SCCCSEEEEEECTTCC-EEE-E-ETTTEEEEE
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcc---cccCCCCeeEECCCCC-EEE-E-cCCceEEEE
Confidence            999998888888888888899999965 66665554321110000   0113567899999986 443 3 455666666


Q ss_pred             Ee
Q 016457          299 PV  300 (389)
Q Consensus       299 ~~  300 (389)
                      .-
T Consensus       250 ~~  251 (255)
T 3qqz_A          250 TP  251 (255)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.84  E-value=3.5e-05  Score=67.58  Aligned_cols=229  Identities=10%  Similarity=0.027  Sum_probs=143.2

Q ss_pred             CCeEEEEecCce-eeeee-cCcceEEEeecCCCCeEEEEe-cCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCC
Q 016457           20 VNSIKRFGLKNS-IQTNF-GDDYVFEIVPKNDWSLMAVSL-STNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        20 ~~~i~~w~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      ...|+..++... ...+. ....+..++|++....|+.+. ..+.|+.+++...    .....+.........+++.+.+
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence            456666666532 22222 356788999998666665554 4688999988652    2223333334567788988744


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCe
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      . .++++-...+.|.+.++........+...-.....|+++|.++.|+.+..  .+.|...++.... ...+....-...
T Consensus       171 ~-~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P  248 (400)
T 3p5b_L          171 S-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  248 (400)
T ss_dssp             T-EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCE
T ss_pred             C-ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCce
Confidence            2 46666666789999998765544445444456889999998888887764  4789888876433 333321233567


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee
Q 016457          171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV  250 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  250 (389)
                      ..|++++.+..++++-...+.|..+|+....  ...+......-.....+++.  .+.++++-...+.|..+|..+++.+
T Consensus       249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCC--CEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEeCCCCc--cEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence            8999998876345555567789999987431  11111111112344567764  3456667777788999997777766


Q ss_pred             EEee
Q 016457          251 ASFE  254 (389)
Q Consensus       251 ~~~~  254 (389)
                      ..+.
T Consensus       325 ~~i~  328 (400)
T 3p5b_L          325 NLLA  328 (400)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.84  E-value=3.2e-07  Score=86.25  Aligned_cols=243  Identities=12%  Similarity=0.005  Sum_probs=132.0

Q ss_pred             EEeecC-CCCeEEEEecCC-----------eEEEEeCCCceee--eeecC-CCCcEEEEEEeCCCCCCEEEEEec-CCeE
Q 016457           43 EIVPKN-DWSLMAVSLSTN-----------VVKLYSPVTGQYS--GECKG-HSSTVNQISFSGPSTPHVLHSCSS-DGTI  106 (389)
Q Consensus        43 ~~~~~~-~~~~l~~~~~d~-----------~i~iw~~~~~~~~--~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~-dg~i  106 (389)
                      ++++.+ ++++++.|+.+.           .+.+||+.+++-.  ..+.. +.....++++..++  .+++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCce
Confidence            566777 888888887542           6889999877532  22221 23334456777788  68888884 4589


Q ss_pred             EEEEccCCeEEEEEEcCCC-CeEEEEEeCCCCeEEEee-cC-----CeEEEEECcCCceeeee----eecccCCeeEEEE
Q 016457          107 RAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAG-CG-----SQIQFWDWRNKKQVACL----EESHVEDVTQVHF  175 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~  175 (389)
                      .+||..+.+-...-..+.. .-.+++..+++..++.+| .+     ..+.+||..+++-...-    . .....-....+
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~-p~~~~~~~~~~  346 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN-PMLTADKQGLY  346 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG-GGCCCCTTGGG
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc-cccccccccee
Confidence            9999987754432111211 122344555777777777 33     57999999876532210    0 00000000111


Q ss_pred             ecCCCCeEEEEeCCC---------cEEEEecCCCCCCCccceeeecc---------CCceeeEEEecCCCcEEEEEecCC
Q 016457          176 VPNNQNKVVSASVDG---------LICTFDTGGDINDDDLLESVINV---------GTSVGKVGFFGETNKHLWCLTHIE  237 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~l~~~~~d~  237 (389)
                      ..++. .++.|+.+|         .+..||..+..    ........         ...-.++.+...++++++.|+.++
T Consensus       347 ~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~  421 (656)
T 1k3i_A          347 RSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  421 (656)
T ss_dssp             TTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             ecCCc-eEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence            23332 555555444         46778887432    11111111         112234444334677888887542


Q ss_pred             -----------cEEEEEcCCCceeEEe-ecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC-----------ce
Q 016457          238 -----------TLSIWDWKDGQNVASF-ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-----------GT  294 (389)
Q Consensus       238 -----------~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-----------g~  294 (389)
                                 .|.+||..+..-.... ....          ....-.+++..|+++  +++.|+.+           ..
T Consensus       422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp----------~~R~~~~~~~l~~g~--i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLY----------FARTFHTSVVLPDGS--TFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEEEECTTCCS----------SCCBSCEEEECTTSC--EEEECCBSBCCTTCCCSBCCC
T ss_pred             CCCCCcCCcceEEEcCCCCCCCeeEEccCCCC----------CCcccCCeEECCCCC--EEEECCcccCcCcCCCCcccc
Confidence                       5778887765543322 0110          111223445567777  66777654           46


Q ss_pred             EEEEEeccCCc
Q 016457          295 VGYFPVNYGGA  305 (389)
Q Consensus       295 i~i~~~~~~~~  305 (389)
                      +.+||..+.+.
T Consensus       490 v~~ydp~t~~W  500 (656)
T 1k3i_A          490 PEIYVPEQDTF  500 (656)
T ss_dssp             CEEEEGGGTEE
T ss_pred             eEEEcCCCCce
Confidence            88999887653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=5.6e-06  Score=73.32  Aligned_cols=255  Identities=9%  Similarity=-0.017  Sum_probs=140.5

Q ss_pred             ceEEEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-CC----eEEEEEccC
Q 016457           40 YVFEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-DG----TIRAWDTRS  113 (389)
Q Consensus        40 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg----~i~iwd~~~  113 (389)
                      ....++++| ++..|+++...+.|+.+|++.++...... .......|+|.+++  +.|+.+.. ++    .+...+. .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G--~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA--DSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS--SEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC--CEEEEEeCCCCcccceEEEEeC-C
Confidence            356889998 45567766655889999988765444333 45567899999998  65555543 22    2333443 3


Q ss_pred             CeEE--EEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          114 FHEV--WSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       114 ~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      +...  ..+.. ......++++|.++.|+++.. ++.|..+|...+................|+|+|++..++++-...+
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence            3221  23332 245677889985666666654 7899999988665422222122245788999999952555556678


Q ss_pred             cEEEEecCCCCCCCccceeeecc---------------CCcee-eEEEec-------CCCcEEEEEecCCcEEEEEcCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINV---------------GTSVG-KVGFFG-------ETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~---------------~~~i~-~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .|..++.............+.+.               -.... .++..+       .++.++++-...+.|+.++ .++
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G  371 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQG  371 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTS
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCC
Confidence            89998876321111111111111               01122 444431       2345555555667888888 345


Q ss_pred             ceeEEeeccc-cccc---C-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          248 QNVASFENAR-SLAS---D-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       248 ~~~~~~~~~~-~~~~---~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      .......... ....   . .-....-.....+++++++.. ++++-..+..|+.++++
T Consensus       372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC-FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred             cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE-EEEEECCCCeEEEEccC
Confidence            4333322100 0000   0 000001134677888885443 34455556677777654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.81  E-value=6.9e-06  Score=78.34  Aligned_cols=193  Identities=10%  Similarity=0.060  Sum_probs=116.6

Q ss_pred             ceEEEeec-CCCCeEEEEecC-C----eEEEEeCCCc-eeeee-ecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeE
Q 016457           40 YVFEIVPK-NDWSLMAVSLST-N----VVKLYSPVTG-QYSGE-CKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTI  106 (389)
Q Consensus        40 ~v~~~~~~-~~~~~l~~~~~d-~----~i~iw~~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i  106 (389)
                      .+...+|| |||++||.+... |    +|+++|+.++ +.+.. +.   .....++|+|++  +.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg--~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDH--TSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSST--TEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCC--CEEEEEEECCCCCCCEE
Confidence            57788999 999998876542 2    5999999988 63321 21   123578999999  566665554     257


Q ss_pred             EEEEccCCe--EEEEEEcC-CCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCCc-ee--eeeeecccCCeeEEEEec
Q 016457          107 RAWDTRSFH--EVWSVTAG-SQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNKK-QV--ACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       107 ~iwd~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~~~~  177 (389)
                      .++++.++.  ....+... ......+.|+|++.+|+....   ...|.++|+.++. ..  ..+.........++.|+.
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            888887653  23333322 344678899999998887664   4578889988752 22  333323445556666655


Q ss_pred             CCCCeEEEEeCC----CcEEEEecCCCCCCCcccee-eeccCC--ceeeEEEecCCCcEEEEEecCCc--EEEEEc
Q 016457          178 NNQNKVVSASVD----GLICTFDTGGDINDDDLLES-VINVGT--SVGKVGFFGETNKHLWCLTHIET--LSIWDW  244 (389)
Q Consensus       178 ~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~--i~i~d~  244 (389)
                      .+ .+++....+    ..|..+|+.+.    ..... +..+..  .+..+.+.  ++.++++...++.  |.++++
T Consensus       330 g~-~l~~~t~~~~a~~~~L~~~d~~~~----~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          330 TS-HLVILTNEGGAVNHKLLIAPRGQP----SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TT-EEEEEECTTTCTTCEEEEEETTST----TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             CC-EEEEEeCCCCCCCcEEEEEcCCCc----ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            43 244554443    25677776532    11122 222332  34555554  4456677777774  556665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=1.4e-05  Score=70.88  Aligned_cols=255  Identities=8%  Similarity=0.023  Sum_probs=140.1

Q ss_pred             ceEEEeecCC--CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---Ce-EEEEEccC
Q 016457           40 YVFEIVPKND--WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---GT-IRAWDTRS  113 (389)
Q Consensus        40 ~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~-i~iwd~~~  113 (389)
                      ....++|+|+  ...|+++...+.|+.++..+++...... .......+++.+++  +++++....   .. +...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG--~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG--DMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC--CEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC--CEEEEcCCCCcccceEEEEECCC
Confidence            3568999985  4456666555899999988776654433 44568899999999  644443311   11 33333322


Q ss_pred             CeE-EEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeee-eecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          114 FHE-VWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACL-EESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       114 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      +.. ...+.. -.....++++|.++.|+++.. ++.|+.+|..++.....+ ..+....-..|+|+|++..++++-...+
T Consensus       217 ~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 112222 245567889985666666654 789999998877653332 2112223347999999953555555678


Q ss_pred             cEEEEecCCCCCCCccceeeecc---------------CCceeeEEEe--------cCCCcEEEEEecCCcEEEEEcCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINV---------------GTSVGKVGFF--------GETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~--------~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .|..++.............+.+.               -.....+++.        ..++.++++-...+.|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998876321111111111111               1234568882        256666666666788999985 45


Q ss_pred             ceeEEeecccc---c--ccC-CccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          248 QNVASFENARS---L--ASD-SWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       248 ~~~~~~~~~~~---~--~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      . +.++.+...   .  ... .-....-.....++++|.... ++++-..+..|+.++++
T Consensus       375 ~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred             C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence            3 333332211   0  000 000001133566777733332 34444456677776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.74  E-value=9.4e-05  Score=64.83  Aligned_cols=232  Identities=9%  Similarity=-0.042  Sum_probs=142.2

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCe
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEI  127 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v  127 (389)
                      +|+.+. ...|+..++........+. ....+..|+|.+.+. .++++-...+.|..+++...    .....+.......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            454444 5789999988665444443 456788999998652 34455456788988888652    2233333344678


Q ss_pred             EEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC-CCcEEEEecCCCCCCCc
Q 016457          128 FCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV-DGLICTFDTGGDINDDD  205 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~  205 (389)
                      ..+++.+.++.|+.+.. .+.|.+.++........+. ........|+++|.+..++++-.. .+.|...++....    
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~----  236 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----  236 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS----
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc----
Confidence            89999876777777655 7899999987554433333 344557899999976534444322 4789999887431    


Q ss_pred             cceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          206 LLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       206 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                       ...+. ..-.....+++++.++.+.++-+..+.|..+|+.............          .......+++.  ++. 
T Consensus       237 -~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~----------~l~~P~gl~v~--~~~-  302 (400)
T 3p5b_L          237 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------RLAHPFSLAVF--EDK-  302 (400)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS----------TTSSEEEEEEE--TTE-
T ss_pred             -cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC----------CCCCCEEEEEe--CCE-
Confidence             22221 1224678999995566555665667899999986443322222111          11234455553  344 


Q ss_pred             EEEEecCCceEEEEEeccCCc
Q 016457          285 WVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       285 ~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++++-...+.|..++..+++.
T Consensus       303 lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          303 VFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEEEESSSCSEEEEESSSCCC
T ss_pred             EEEecCCCCeEEEEEcCCCCc
Confidence            345556678898888766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=4e-05  Score=64.62  Aligned_cols=209  Identities=10%  Similarity=-0.011  Sum_probs=119.0

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC--Ce
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG--SQ  147 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~  147 (389)
                      .+.+..+... .....++|.+++  .++++-..++.|..||... +....+.. ......+++.+++..+++....  ..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g--~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDG--TIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTS--CEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             ceEeEeCCCC-CCcceEEECCCC--CEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcce
Confidence            3444455432 457789999988  5666666788999999765 44444443 4678899999887744443332  24


Q ss_pred             EEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC----ccce--eeeccCCceeeEE
Q 016457          148 IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD----DLLE--SVINVGTSVGKVG  221 (389)
Q Consensus       148 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~--~~~~~~~~i~~~~  221 (389)
                      |..+|..+++...............++..+.+ ..+++-..++.|+.+|..++....    ....  .....-.....+ 
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            77778777765432221122233455555544 245554468899999986421000    0000  000011123444 


Q ss_pred             EecCCCcEEEEEecCCcEEEEEcCC-Cce--eEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEE
Q 016457          222 FFGETNKHLWCLTHIETLSIWDWKD-GQN--VASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                       ++..+.++++-...+.|..|++.. ++.  ...+..             ......++++++|+  +.++....+.|.++
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-------------~~~P~gi~vd~dG~--l~va~~~~~~V~~~  238 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-------------QTNIDDFAFDVEGN--LYGATHIYNSVVRI  238 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-------------SCCCSSEEEBTTCC--EEEECBTTCCEEEE
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-------------cCCCCCeEECCCCC--EEEEeCCCCeEEEE
Confidence             533334455555678999999874 321  111211             02356788899986  55666567889999


Q ss_pred             Eec
Q 016457          299 PVN  301 (389)
Q Consensus       299 ~~~  301 (389)
                      +..
T Consensus       239 ~~~  241 (306)
T 2p4o_A          239 APD  241 (306)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.68  E-value=8.8e-05  Score=62.74  Aligned_cols=228  Identities=8%  Similarity=-0.018  Sum_probs=143.5

Q ss_pred             CCCCeEEEEecCce---eee-eecCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceee-eeecCCCCcEEEEEEeCC
Q 016457           18 DNVNSIKRFGLKNS---IQT-NFGDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYS-GECKGHSSTVNQISFSGP   91 (389)
Q Consensus        18 ~~~~~i~~w~~~~~---~~~-~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~~~~~   91 (389)
                      +....|+..++...   ... +.+...+.+++|++....|+.+ ...+.|..+++..+... ..+...-.....+++.+.
T Consensus        10 ~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             ECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             EccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            44567888887642   222 2224557789999865555444 45788999998765322 122222234667888864


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +. .++++-...+.|.++++........+.........+++.|.++.|+.+..  .+.|...++.. .....+....-..
T Consensus        90 ~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~  167 (318)
T 3sov_A           90 GE-KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYW  167 (318)
T ss_dssp             TT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSC
T ss_pred             CC-eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCC
Confidence            42 45566566788999998754333233334466789999988888888763  57888888763 3333332122345


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      ...|+++|++..++++-+..+.|..+|+....     ...+. ........+++.  .+.++++-...+.|..++..+++
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-----~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-----RQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----eEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCC
Confidence            68999999775455565667889999987421     11121 123445677775  34566666667899999987787


Q ss_pred             eeEEee
Q 016457          249 NVASFE  254 (389)
Q Consensus       249 ~~~~~~  254 (389)
                      ....+.
T Consensus       241 ~~~~i~  246 (318)
T 3sov_A          241 GLREIH  246 (318)
T ss_dssp             SCEEEE
T ss_pred             ceEEEe
Confidence            665554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00017  Score=68.61  Aligned_cols=207  Identities=11%  Similarity=0.041  Sum_probs=131.1

Q ss_pred             CcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCc----eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEcc
Q 016457           38 DDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTG----QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      ...+..|+|++....|+.+ ...+.|+.+++...    .....+.........|++.+.+. +++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~-~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC-cEEEEecCCCeEEEEeCC
Confidence            5667899999865555544 44678998888642    22233332344567888887663 466666677899999987


Q ss_pred             CCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          113 SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      .......+...-.....|+++|.++.|+.+..  .+.|...++... ....+....-.....|++++.+..++++-...+
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            55444444444566899999998888888764  378998888643 333333133356889999987753455545567


Q ss_pred             cEEEEecCCCCCCCccceeeec---cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          191 LICTFDTGGDINDDDLLESVIN---VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      .|..+++....     ...+..   .-....+|++.  .+.++++-...+.|...|..+++.+..+
T Consensus       581 ~I~~~d~dG~~-----~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          581 SISSIDVNGGN-----RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTSCS-----CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cEEEEecCCCc-----eEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            89999987432     222211   11234566665  3355566666778888887777655554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.61  E-value=0.00017  Score=61.02  Aligned_cols=229  Identities=9%  Similarity=-0.022  Sum_probs=139.6

Q ss_pred             eEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE-EEEEEcCCCCeE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-VWSVTAGSQEIF  128 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~  128 (389)
                      +|+.+. ...|+..++....  ....+. ......+++|.+.+. .++++-...+.|..+++..... ...+...-....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~-~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGT-EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCC-EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            444443 4678999987653  222222 224567899998652 4555655678899999876532 122233334567


Q ss_pred             EEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe--CCCcEEEEecCCCCCCCc
Q 016457          129 CFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS--VDGLICTFDTGGDINDDD  205 (389)
Q Consensus       129 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~  205 (389)
                      .+++.+.++.|+.+.. .+.|.++++........+. ........+++.|.+. .|+.+.  ..+.|..+++....    
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~----  156 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSS----  156 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGT-EEEEEECSSSCEEEEEETTSCS----
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCC----
Confidence            8899877777776654 6899999986443222222 3445678999999765 444444  35788888887421    


Q ss_pred             cceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          206 LLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       206 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                       ...+. ..-.....+++++.++.+.++-+..+.|..+|+... ....+...           .......+++..  +. 
T Consensus       157 -~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~-----------~~~~P~glav~~--~~-  220 (318)
T 3sov_A          157 -RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKG-----------SLPHPFALTLFE--DI-  220 (318)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECS-----------CCSCEEEEEEET--TE-
T ss_pred             -eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecC-----------CCCCceEEEEeC--CE-
Confidence             11221 122356889999556666666667789999998643 33333211           113345566643  33 


Q ss_pred             EEEEecCCceEEEEEeccCCc
Q 016457          285 WVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       285 ~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++++-...+.|..++..+++.
T Consensus       221 lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          221 LYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEecCCCeEEEEECCCCCc
Confidence            445666778899999876654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.56  E-value=1.7e-06  Score=81.57  Aligned_cols=230  Identities=11%  Similarity=0.036  Sum_probs=137.3

Q ss_pred             CCCeEEEEecCce-eeeee-cCcceEEEeecCCCCeEEEEe-cCCeEEEEeCCC----ceeeeeecCCCCcEEEEEEeCC
Q 016457           19 NVNSIKRFGLKNS-IQTNF-GDDYVFEIVPKNDWSLMAVSL-STNVVKLYSPVT----GQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        19 ~~~~i~~w~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~----~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      ....|+..++... ...+. ....+..++|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            4456777776532 22222 245677899998776666654 357899999875    2222222222223456777754


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +. .++++-...+.|.++++........+.........++++|.++.|+.+..  .+.|..+++... ....+....-..
T Consensus       464 ~g-~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~  541 (699)
T 1n7d_A          464 HS-NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW  541 (699)
T ss_dssp             SS-BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSS
T ss_pred             CC-cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCC
Confidence            42 45566556788999998754433333322345678899988887777664  368888877533 222222122344


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      .+.|+|+|++..++++-+..+.|..+|+.+..  ...+............|++. . +.++++....+.|..++..+++.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~~~P~glavd-~-~~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSC--CEEECCCSSSCSSCCCCEEE-T-TEEEEECSTTTCEEEEETTTEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCc--eEEEEecCCcCCCceEeEEE-C-CEEEEEeCCCCeEEEEEccCCCc
Confidence            67899999876566666677889999997421  11111111112334566775 3 35666666678999999888877


Q ss_pred             eEEee
Q 016457          250 VASFE  254 (389)
Q Consensus       250 ~~~~~  254 (389)
                      +..+.
T Consensus       618 ~~~i~  622 (699)
T 1n7d_A          618 VNLLA  622 (699)
T ss_dssp             EECCC
T ss_pred             eEEee
Confidence            76664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.56  E-value=0.00039  Score=66.10  Aligned_cols=232  Identities=9%  Similarity=-0.035  Sum_probs=139.8

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC----eEEEEEEcCCCCe
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF----HEVWSVTAGSQEI  127 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v  127 (389)
                      +|+.+. ...|+..++...+....+. ....+..|+|.+... .++++-...+.|+.+++...    .....+.......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~-~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCC-eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            444443 4568888887655444443 345678999998552 45555556678988888742    2233333334567


Q ss_pred             EEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-CcEEEEecCCCCCCCc
Q 016457          128 FCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-GLICTFDTGGDINDDD  205 (389)
Q Consensus       128 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~  205 (389)
                      ..|++.+.++.|+.+.. .+.|.+.++........+. ........|+++|.+..++++-... +.|...++....    
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----  548 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----  548 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----
Confidence            78999888878877765 7899999987544333332 3445688999999865344444333 679999887431    


Q ss_pred             cceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeE
Q 016457          206 LLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENL  284 (389)
Q Consensus       206 ~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  284 (389)
                       ...+.. .-.....|++.+..+.++++-...+.|..+++........+....          .-.....+++.  ++.+
T Consensus       549 -~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~----------~l~~P~glav~--~~~l  615 (791)
T 3m0c_C          549 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------RLAHPFSLAVF--EDKV  615 (791)
T ss_dssp             -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT----------TTSSEEEEEEE--TTEE
T ss_pred             -eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC----------ccCCCCEEEEe--CCEE
Confidence             222222 224678999996666666665666789999986443333332211          11233455553  3443


Q ss_pred             EEEEecCCceEEEEEeccCCc
Q 016457          285 WVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       285 ~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       .++-...+.|...+..+++.
T Consensus       616 -YwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          616 -FWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             -EEEETTTTEEEEEETTTCCC
T ss_pred             -EEEECCCCEEEEEeCCCCcc
Confidence             45555667888888666643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.54  E-value=0.00027  Score=59.42  Aligned_cols=199  Identities=15%  Similarity=0.223  Sum_probs=127.1

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC----CCC-CEEEEEe-c--CCeEEEEEcc--CCeEEE
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP----STP-HVLHSCS-S--DGTIRAWDTR--SFHEVW  118 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~-~~l~s~~-~--dg~i~iwd~~--~~~~~~  118 (389)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|.    +.. .++++.. .  +++|++|++.  ++ .+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence            3455665666788999999 7898888864  56777776652    110 0223333 3  5789999773  33 344


Q ss_pred             EEEc------C-CCCeEEEEE--eCCCC--eEEEeecCCeEEEEECc-------CCceeeeeeecccCCeeEEEEecCCC
Q 016457          119 SVTA------G-SQEIFCFSF--GGSTD--YLLAAGCGSQIQFWDWR-------NKKQVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       119 ~~~~------~-~~~v~~~~~--~~~~~--~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      .+..      . -..+..+++  +|..+  ++++...+|.+..|++.       +.+.++++.  ....+..+...+...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYG  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCC
Confidence            4421      1 155666777  66544  57777789999999883       345677776  456788999998875


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCC-Cccceeee--ccCCceeeEEEec-CCCc-EEEEEe-cCCcEEEEEcC-CCceeEEe
Q 016457          181 NKVVSASVDGLICTFDTGGDIND-DDLLESVI--NVGTSVGKVGFFG-ETNK-HLWCLT-HIETLSIWDWK-DGQNVASF  253 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~-~~~~-~l~~~~-~d~~i~i~d~~-~~~~~~~~  253 (389)
                       .|+.+-++.-|..|+.+..... ...+....  .....+..|++.+ ++++ +|++++ .++++.+||.. +.+.+..|
T Consensus       193 -~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          193 -RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             -EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             -eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence             8999998877777775522111 11222221  1224678888752 3333 566655 57799999996 66777777


Q ss_pred             e
Q 016457          254 E  254 (389)
Q Consensus       254 ~  254 (389)
                      .
T Consensus       272 ~  272 (355)
T 3amr_A          272 R  272 (355)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.00027  Score=62.84  Aligned_cols=257  Identities=7%  Similarity=-0.023  Sum_probs=144.4

Q ss_pred             eEEEeecC-CCCeEEEEec-CCeEEEEeCCCceeeeeecC---CCCcEEEEEE-------eCCCCCCEEEEEecCC----
Q 016457           41 VFEIVPKN-DWSLMAVSLS-TNVVKLYSPVTGQYSGECKG---HSSTVNQISF-------SGPSTPHVLHSCSSDG----  104 (389)
Q Consensus        41 v~~~~~~~-~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~-------~~~~~~~~l~s~~~dg----  104 (389)
                      ...|+|+| +...|+++.. .+.|++.|++++........   .......|+|       .+++  ..|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G--~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA--EYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--CEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC--CEEEEEeCCCCCcc
Confidence            46889998 3445555544 46799999887766544432   2235889999       9998  5566655443    


Q ss_pred             ---eEEEEEccC-CeEE-----EEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECc-------CCce---------
Q 016457          105 ---TIRAWDTRS-FHEV-----WSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWR-------NKKQ---------  158 (389)
Q Consensus       105 ---~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~-------~~~~---------  158 (389)
                         .|.+.+... +...     ..+... .....++++|.++.|+++.. ++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               255665333 1211     122221 23457888987777777665 7889999997       4443         


Q ss_pred             --eee-eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc---C------------Ccee-e
Q 016457          159 --VAC-LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV---G------------TSVG-K  219 (389)
Q Consensus       159 --~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~------------~~i~-~  219 (389)
                        ... +..+.......|+|+|++..++++-+....|+.++.............+.+.   .            .... .
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              112 2212234568999999995245555667889987765221000000111111   0            1123 3


Q ss_pred             EEEec------CCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc----ccCCcc--------CCCCCceeeecccCC-
Q 016457          220 VGFFG------ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL----ASDSWT--------LDDVDYFVDCHYPGE-  280 (389)
Q Consensus       220 ~~~~~------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~i~~~~~~~~-  280 (389)
                      ++...      .++.++++-.....|+.++ .++ .+.++.+....    ....|.        ...-.....++++++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            44431      3455666666778999998 456 44455432110    000000        001234567888886 


Q ss_pred             CCeEEEEEecCCceEEEEEeccCC
Q 016457          281 GENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       281 ~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +.  +.++=..+..|+.++++...
T Consensus       456 g~--lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          456 EM--FYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             TE--EEEEETTTTEEEEEEECCCC
T ss_pred             CE--EEEEeCCCCEEEEEECCCCc
Confidence            54  45566667788888887544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.49  E-value=0.0014  Score=65.18  Aligned_cols=288  Identities=13%  Similarity=0.063  Sum_probs=154.2

Q ss_pred             CcceEEEeecCC------CCeEEEEec-CCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           38 DDYVFEIVPKND------WSLMAVSLS-TNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        38 ~~~v~~~~~~~~------~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ...|.|+++.|.      .+++|+|.. |++|+|+++.+.+.+....- -.....++.+..-+...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            678999999863      369999996 99999999987665533221 1123344443321211588899999987655


Q ss_pred             Ecc--CCeEEE--EEEcCCCCeEEEEEeCCCC-eEEEeecCCeEEEEECcCCceeeeeeecccCCeeEE-EEecCC-CCe
Q 016457          110 DTR--SFHEVW--SVTAGSQEIFCFSFGGSTD-YLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQV-HFVPNN-QNK  182 (389)
Q Consensus       110 d~~--~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~~~  182 (389)
                      .+.  +++...  +......++.-..+...+. .+++++ +....++--+ ++....-  -....+.++ .|+... +.-
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSSTTE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEec--cChHHhceEeccCcccCCCc
Confidence            543  454432  2222345565555543444 344444 4444444433 3322211  122234333 344322 224


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC--------------------------
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI--------------------------  236 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------------------  236 (389)
                      ++..+ ++.++|..+...   .............+..++++|..+.+.+..+..                          
T Consensus       709 ~v~~~-~~~LrI~~i~~~---~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (1158)
T 3ei3_A          709 LALAN-NSTLTIGTIDEI---QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS  784 (1158)
T ss_dssp             EEEEC-SSCEEEEEECCS---SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred             EEEEc-CCceEEEEeccc---CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence            55444 556999988632   222333344567888889885544333332210                          


Q ss_pred             ----------------------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec----
Q 016457          237 ----------------------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT----  290 (389)
Q Consensus       237 ----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~----  290 (389)
                                            +.|++.|..+.+.+..+.-...        ++...+..+.|..+.+. +++.|+    
T Consensus       785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n--------E~~~sv~~v~~~~~~~~-~lvVGTa~~~  855 (1158)
T 3ei3_A          785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN--------EYALSLVSCKLGKDPNT-YFIVGTAMVY  855 (1158)
T ss_dssp             CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECCTTCCCC-EEEEEEEECC
T ss_pred             ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC--------cceEEEEEEEEccCCCE-EEEEEeeecC
Confidence                                  2355666655555544432110        01122333445444333 677665    


Q ss_pred             ------CCceEEEEEeccCCccccCCCeEEEe-cccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          291 ------GAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       291 ------~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                            ..|.|++|++..+++       ..+. ....++|++++        .|  +|++|++.+  .+|++|++...
T Consensus       856 ~~e~~~~~Gri~vf~v~~~kL-------~lv~~~~v~g~v~al~--------~~--~g~Lla~ig--~~l~vy~l~~~  914 (1158)
T 3ei3_A          856 PEEAEPKQGRIVVFQYSDGKL-------QTVAEKEVKGAVYSMV--------EF--NGKLLASIN--STVRLYEWTTE  914 (1158)
T ss_dssp             TTCSSCCCEEEEEEEEETTEE-------EEEEEEEESSCEEEEE--------EE--TTEEEEEET--TEEEEEEECTT
T ss_pred             CCCCCCCceEEEEEEEECCEE-------EEEEEEEcCCcCEEEe--------ee--CCEEEEEcC--CEEEEEECCCC
Confidence                  358999999985443       2221 12346777774        23  344455554  78999999854

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.45  E-value=0.00055  Score=58.87  Aligned_cols=262  Identities=11%  Similarity=0.098  Sum_probs=164.8

Q ss_pred             CeEEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE
Q 016457           21 NSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC  100 (389)
Q Consensus        21 ~~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~  100 (389)
                      .+|.+.|+.+.....+..-.--+.-.+|..+.||.=. ..++.|+|+++.+.++.+.- .+.|.-=.|-.+.   .|+-.
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~---~l~lV  122 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN---TVALV  122 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT---EEEEE
T ss_pred             CeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC---eEEEE
Confidence            3677777654222221101111344688888888775 78999999999988888774 4567667787554   66666


Q ss_pred             ecCCeEEEEEccC-CeEEEEEEcC----CCCeEEEEEeCCCCeEEEeec-------CCeEEEEECcCCceeeeeeecccC
Q 016457          101 SSDGTIRAWDTRS-FHEVWSVTAG----SQEIFCFSFGGSTDYLLAAGC-------GSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus       101 ~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      + +..|.-|++.. ..+.+.|..|    ...|..-..+++.+.++..|-       .|.+.+|..+.+ .-+.++ +|..
T Consensus       123 T-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa  199 (494)
T 1bpo_A          123 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAA  199 (494)
T ss_dssp             C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC-CSEE
T ss_pred             c-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe-eeee
Confidence            5 45799999973 4677778776    567778888888888887664       378889987643 333444 6665


Q ss_pred             CeeEEEEecC--CCCeEEEEeCC---CcEEEEecCCCC-CC---Cccceee-e---ccCCceeeEEEecCCCcEEEEEec
Q 016457          169 DVTQVHFVPN--NQNKVVSASVD---GLICTFDTGGDI-ND---DDLLESV-I---NVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       169 ~v~~~~~~~~--~~~~l~~~~~d---~~i~i~d~~~~~-~~---~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                      ....+.+..+  ...+++.+...   +.++|.++.... ..   .+....+ .   ...+-..++..+ +....++..+.
T Consensus       200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-~kygviyviTK  278 (494)
T 1bpo_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITK  278 (494)
T ss_dssp             EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-TTTTEEEEEET
T ss_pred             eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-ccCCEEEEEec
Confidence            5444433221  11234444432   789999986431 11   0111111 1   123445678888 56668999999


Q ss_pred             CCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          236 IETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       236 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      -|.|++||+.++.++..-.-.            .+.|...+......+  +++....|.|.-..++....
T Consensus       279 ~G~i~lyDleTgt~i~~nrIs------------~~~iF~t~~~~~~~G--i~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRIS------------GETIFVTAPHEATAG--IIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEECC------------SSCEEEEEEETTTTE--EEEEETTCEEEEEEECTTTH
T ss_pred             CceEEEEecccceeeeeeccc------------CCceEEecccCCCCc--EEEEccCceEEEEEEccccc
Confidence            999999999999998776542            255555555544443  24444788887777776554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=0.00022  Score=63.15  Aligned_cols=152  Identities=11%  Similarity=0.046  Sum_probs=97.1

Q ss_pred             cEEEEEEeC-CCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC-C----eEEEEECcC
Q 016457           82 TVNQISFSG-PSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-S----QIQFWDWRN  155 (389)
Q Consensus        82 ~v~~i~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~  155 (389)
                      ....|+++| ++  ..|+.+...+.|+.+|+..+.... +.........++++++++.|+++... +    .+..++ ..
T Consensus       138 ~P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE  213 (430)
T ss_dssp             CCCEEEEETTEE--EEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred             CCCEEEECCCCC--CeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence            357889997 34  366666655889999988765543 33345678899999998877777652 2    344444 33


Q ss_pred             Ccee--eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec--cCCceeeEEEecCCCc-EE
Q 016457          156 KKQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN--VGTSVGKVGFFGETNK-HL  230 (389)
Q Consensus       156 ~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~l  230 (389)
                      +...  ..+.  .......++++|++..++++-..++.|..++..+..     ...+..  .......++++ ++++ ++
T Consensus       214 g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-----~~~~~~~~~~~~P~gia~~-pdG~~ly  285 (430)
T 3tc9_A          214 SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-----TTPLFTIQDSGWEFHIQFH-PSGNYAY  285 (430)
T ss_dssp             GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-----EEEEEECSSSSCCEEEEEC-TTSSEEE
T ss_pred             Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-----EEEEEEcCCCCcceeEEEc-CCCCEEE
Confidence            3322  2332  234467889999433477777678899999998432     111111  22356789999 6677 45


Q ss_pred             EEEecCCcEEEEEcC
Q 016457          231 WCLTHIETLSIWDWK  245 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~  245 (389)
                      ++-...+.|..++..
T Consensus       286 v~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          286 IVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEETTTTEEEEEEEE
T ss_pred             EEECCCCEEEEEeCC
Confidence            555567789998765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.43  E-value=0.00025  Score=62.75  Aligned_cols=213  Identities=7%  Similarity=-0.036  Sum_probs=123.3

Q ss_pred             CeEEEEec-Cceeeeeec-CcceEEEeecCCCCeEEEEecCC-----eEEEEeCCCcee-eeeecCCCCcEEEEEEeC-C
Q 016457           21 NSIKRFGL-KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTN-----VVKLYSPVTGQY-SGECKGHSSTVNQISFSG-P   91 (389)
Q Consensus        21 ~~i~~w~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~-~~~~~~~~~~v~~i~~~~-~   91 (389)
                      +.|+.++. ...+..+.. ......++++++|+ |+++...+     .+...+...+.. ...+. .-.....+++.| +
T Consensus       162 ~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~  239 (433)
T 4hw6_A          162 DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQN  239 (433)
T ss_dssp             SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTT
T ss_pred             CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCC
Confidence            45555555 334444444 55688999999999 55554321     233333322111 01111 223456788888 5


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEE-EcC-CCCeEEEEEeCCCCeEEEeec-CCeEEEEECc--CCce--eeeeee
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSV-TAG-SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWR--NKKQ--VACLEE  164 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~--~~~~~~  164 (389)
                      +  .++++-..++.|+.++..++.....+ ... ...-..++|+|+++.|+++.. .+.|..++..  ++..  ...+. 
T Consensus       240 G--~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a-  316 (433)
T 4hw6_A          240 G--KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC-  316 (433)
T ss_dssp             C--CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE-
T ss_pred             C--eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE-
Confidence            5  45555556788999998877663333 222 223357999999987777665 6899998865  2221  11221 


Q ss_pred             cc---------------cCCeeEEEE---------ecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc-------
Q 016457          165 SH---------------VEDVTQVHF---------VPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV-------  213 (389)
Q Consensus       165 ~~---------------~~~v~~~~~---------~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------  213 (389)
                      +.               -.....+++         .+++ +++++-...+.|+.++...      .+..+.+.       
T Consensus       317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G------~v~t~~G~g~~~~~G  389 (433)
T 4hw6_A          317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEG------RVTTYAGRGNSREWG  389 (433)
T ss_dssp             ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTS------EEEEEECCCTTCSSC
T ss_pred             ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCC------CEEEEEeCCCCCccc
Confidence            11               123567888         6666 3666666778899998642      12222211       


Q ss_pred             -----------CCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          214 -----------GTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       214 -----------~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                                 -.....|++.|+++.++++-..++.|+.++++
T Consensus       390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                       12356788886666666666666777777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.40  E-value=8.9e-06  Score=76.43  Aligned_cols=113  Identities=8%  Similarity=0.048  Sum_probs=70.4

Q ss_pred             EEEEeC-CCCCCEEEEEecCC-----------eEEEEEccCCeE--EEEEEcC-CCCeEEEEEeCCCCeEEEeec-CCeE
Q 016457           85 QISFSG-PSTPHVLHSCSSDG-----------TIRAWDTRSFHE--VWSVTAG-SQEIFCFSFGGSTDYLLAAGC-GSQI  148 (389)
Q Consensus        85 ~i~~~~-~~~~~~l~s~~~dg-----------~i~iwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i  148 (389)
                      .+++.+ ++  ++++.|+.+.           .+.+||+.+++.  +..+... .....++++.+++..++++|. +..+
T Consensus       190 ~~av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             eEEEEecCC--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence            556676 66  6888877543           588999887653  2233322 223345666667777777775 5689


Q ss_pred             EEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CC-----CcEEEEecCCC
Q 016457          149 QFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VD-----GLICTFDTGGD  200 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~  200 (389)
                      .+||..+.+-...-.......-.+++..++++ +++.|+ .+     ..+.+||..+.
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCC
Confidence            99999876433221101122234556667885 888888 34     56899999854

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.36  E-value=5e-06  Score=78.32  Aligned_cols=225  Identities=8%  Similarity=-0.060  Sum_probs=130.2

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEccC----CeEEEEEEcCCCCeEEEEEe
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTRS----FHEVWSVTAGSQEIFCFSFG  133 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~  133 (389)
                      .+.|+..++.+.+....+.. ...+..|+|.+.+  ..|+.+ ...+.|+.+++..    ......+.........|++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~--~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTT--TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEcccccc--CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            45788888876655444433 3456789999866  355544 4567899998875    22222221112335568887


Q ss_pred             CCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-CcEEEEecCCCCCCCccceeee
Q 016457          134 GSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-GLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       134 ~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      +.++.|+.+.. .+.|.++++........+. ........|+++|.+..++++-... +.|..+++....     ...+.
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-----~~~l~  535 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLV  535 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-----CCEES
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-----eeEEE
Confidence            66667666644 6899999987544333332 2234567899999765455544333 788888876321     11111


Q ss_pred             -ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEec
Q 016457          212 -NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGT  290 (389)
Q Consensus       212 -~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~  290 (389)
                       ..-.....|++++.++.++++-+..+.|..+++... ....+....    .     .......+++..  +. ++++-.
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~----~-----~~~~P~glavd~--~~-lywtd~  602 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDE----K-----RLAHPFSLAVFE--DK-VFWTDI  602 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCS----S-----SCSSCCCCEEET--TE-EEEECS
T ss_pred             eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecC----C-----cCCCceEeEEEC--CE-EEEEeC
Confidence             122356789999656666677777789999998643 333332110    0     112233445543  34 345556


Q ss_pred             CCceEEEEEeccCCc
Q 016457          291 GAGTVGYFPVNYGGA  305 (389)
Q Consensus       291 ~dg~i~i~~~~~~~~  305 (389)
                      ..+.|..++..+++.
T Consensus       603 ~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          603 INEAIFSANRLTGSD  617 (699)
T ss_dssp             TTTCEEEEETTTEEE
T ss_pred             CCCeEEEEEccCCCc
Confidence            678899998766554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.33  E-value=0.002  Score=59.80  Aligned_cols=229  Identities=8%  Similarity=-0.049  Sum_probs=142.9

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCF  130 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  130 (389)
                      +|+.+ ....|+..++++.+....+. ..-..+..|+|.+.+. .++++-..++.|..+++........+.........+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~-~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN-RIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC-EEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            44444 46789999998654333222 1234678999998763 455555567889999887544433344333467789


Q ss_pred             EEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe--CCCcEEEEecCCCCCCCccc
Q 016457          131 SFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS--VDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       131 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~  207 (389)
                      ++.+.++.|+.+.. .+.|.+.++........+. ..-.....|+++|... .|+...  ..+.|...++....     .
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~~~dG~~-----~  158 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEG-FMYWTEWGGKPKIDRAAMDGSE-----R  158 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCS-----C
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCC-eEEEeCCCCCCEEEEEeCCCCc-----e
Confidence            99877788777765 6889999986543222222 2345578999999664 444443  35678888887432     2


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ..+...-.....+++.+.++.+.++-...+.|..+|+..... ..+..            .......+++..  .. +.+
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~------------~l~~P~glav~~--~~-ly~  222 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD------------DLPHPFGLTQYQ--DY-IYW  222 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE------------CCSCEEEEEEET--TE-EEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec------------cCCCceEEEEEC--CE-EEE
Confidence            222233456789999955566666666678999999865433 33322            113344666654  33 345


Q ss_pred             EecCCceEEEEEeccCCc
Q 016457          288 GGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~  305 (389)
                      +-...+.|...|..+++.
T Consensus       223 tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          223 TDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EETTTTEEEEEETTTCCS
T ss_pred             ecCCCCEEEEEECCCCCc
Confidence            555678888888766643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.29  E-value=0.00013  Score=61.46  Aligned_cols=193  Identities=11%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             CCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecC----CCC--eEEEEe-C--CCcEEEEecCCCCCCCcc
Q 016457          136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN----NQN--KVVSAS-V--DGLICTFDTGGDINDDDL  206 (389)
Q Consensus       136 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~~~~-~--d~~i~i~d~~~~~~~~~~  206 (389)
                      ...++.+...+-+.+||+ +++.++.+. .  ..++.+..-|.    ++.  ++++.. .  +++|.+|++....   ..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~---~~  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN---GT  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT---CC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC---Cc
Confidence            455666666889999999 899998886 2  56777777663    110  223333 3  5789999775221   11


Q ss_pred             ceeee------ccC-CceeeEEE--ecCCCc-EEEEEecCCcEEEEEcC---C----CceeEEeecccccccCCccCCCC
Q 016457          207 LESVI------NVG-TSVGKVGF--FGETNK-HLWCLTHIETLSIWDWK---D----GQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       207 ~~~~~------~~~-~~i~~~~~--~~~~~~-~l~~~~~d~~i~i~d~~---~----~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      +..+.      ... ..+..+++  ++..+. ++++...+|.+..|++.   .    .+.+++|..             .
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-------------g  179 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-------------N  179 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-------------S
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-------------C
Confidence            22221      112 56677887  543453 68888899999999883   2    345556553             2


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCC--CCCce-eE-
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPA--QSHGI-FG-  344 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~--s~~~~-~l-  344 (389)
                      ..+-.|...+...  .|..+-++.-|..++.+...- ..++.+..+..+|- ..+..|         ++  .++++ || 
T Consensus       180 sq~EgcvvDd~~g--~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGL---------ai~~~~~g~gyLi  247 (355)
T 3amr_A          180 SQTEGMAADDEYG--RLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGL---------TIYYAADGKGYLM  247 (355)
T ss_dssp             SCEEEEEEETTTT--EEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEE---------EEEECGGGCEEEE
T ss_pred             CCcceEEEcCCCC--eEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceE---------EEEecCCCCEEEE
Confidence            5677888988877  667787876565555442210 00111222211222 245555         33  45555 44 


Q ss_pred             EEecCCCeEEEEeccC
Q 016457          345 WTGGEDGRLCCWLSDD  360 (389)
Q Consensus       345 ~s~~~dg~v~iW~~~~  360 (389)
                      +|+-.+.++.+|+.+.
T Consensus       248 vSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          248 ASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCEEEEEECCC
Confidence            4444677999999973

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.27  E-value=0.0014  Score=55.66  Aligned_cols=275  Identities=13%  Similarity=0.092  Sum_probs=141.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee----cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC----KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      ...+.++.|.+.+..+++| ..|.| +...+.|+.-...    ......+.+|.|.+ +  ..++ ++.++.|.. ..+.
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~--~~~~-~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N--EGWI-VGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T--EEEE-EEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C--eEEE-EECCCeEEE-ECCC
Confidence            5678999998877777754 56765 3333444322221    12345789999986 4  3444 456665443 2222


Q ss_pred             CeEEEEEE---cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          114 FHEVWSVT---AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       114 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ++.-..+.   .....+..+.+.++ +.+++++.++.|..- ...++.-..+.......+..+.+.+++. +++.+. +|
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G  183 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGN-GSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSS-RG  183 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEET-TEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEET-TS
T ss_pred             CCCceECccccCCCCCeEEEEEECC-CCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEEC-CC
Confidence            33212211   12345777887644 456666666654321 1223333333324456788999999874 665554 55


Q ss_pred             cEEE-EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          191 LICT-FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       191 ~i~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      .+.. .|-. +. ....+  .......+..+.+. +++. +++.+.+|.+.+.+...++.-..+.... +       .+.
T Consensus       184 ~~~~S~d~g-G~-tW~~~--~~~~~~~~~~~~~~-~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~-~-------~~~  249 (327)
T 2xbg_A          184 SFYSTWEPG-QT-AWEPH--NRTTSRRLHNMGFT-PDGR-LWMIVNGGKIAFSDPDNSENWGELLSPL-R-------RNS  249 (327)
T ss_dssp             SEEEEECTT-CS-SCEEE--ECCSSSCEEEEEEC-TTSC-EEEEETTTEEEEEETTEEEEECCCBCTT-S-------SCC
T ss_pred             cEEEEeCCC-CC-ceeEC--CCCCCCccceeEEC-CCCC-EEEEeCCceEEEecCCCCCeeEeccCCc-c-------cCC
Confidence            5443 3421 11 11111  12334567888887 4555 4455667877665422232221111100 0       022


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec--ccceeeeeccCCCcccCCCCCCCceeEEEe
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG--GHTAVVRSVLPMPSVQGRPAQSHGIFGWTG  347 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~  347 (389)
                      ..+..+.+.+++.  +++++ .+|.| ++..+.++.      -..+..  .....+.++         .|.+++.+ +.+
T Consensus       250 ~~~~~v~~~~~~~--~~~~g-~~g~i-~~S~DgG~t------W~~~~~~~~~~~~~~~v---------~~~~~~~~-~~~  309 (327)
T 2xbg_A          250 VGFLDLAYRTPNE--VWLAG-GAGAL-LCSQDGGQT------WQQDVDVKKVPSNFYKI---------LFFSPDQG-FIL  309 (327)
T ss_dssp             SCEEEEEESSSSC--EEEEE-STTCE-EEESSTTSS------CEECGGGTTSSSCCCEE---------EEEETTEE-EEE
T ss_pred             cceEEEEecCCCE--EEEEe-CCCeE-EEeCCCCcc------cEEcCccCCCCCCeEEE---------EEECCCce-EEE
Confidence            3577888888766  55555 46666 344444443      111110  112344555         66655654 555


Q ss_pred             cCCCeEEEEe
Q 016457          348 GEDGRLCCWL  357 (389)
Q Consensus       348 ~~dg~v~iW~  357 (389)
                      +.+|.|.-++
T Consensus       310 G~~G~i~~~~  319 (327)
T 2xbg_A          310 GQKGILLRYV  319 (327)
T ss_dssp             CSTTEEEEEC
T ss_pred             cCCceEEEEc
Confidence            6689776554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.23  E-value=0.00058  Score=65.14  Aligned_cols=171  Identities=15%  Similarity=0.017  Sum_probs=97.4

Q ss_pred             CeEEEEecCce-eeeeec-CcceEEEeecCCCCeEEEEecC-----CeEEEEeCCCceee--eeec-CCCCcEEEEEEeC
Q 016457           21 NSIKRFGLKNS-IQTNFG-DDYVFEIVPKNDWSLMAVSLST-----NVVKLYSPVTGQYS--GECK-GHSSTVNQISFSG   90 (389)
Q Consensus        21 ~~i~~w~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~--~~~~-~~~~~v~~i~~~~   90 (389)
                      ..|+++++... ...... ......++|+|||+.|+....+     ..|.++++.+++..  ..+. ........+.|+|
T Consensus       201 ~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp  280 (751)
T 2xe4_A          201 YTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA  280 (751)
T ss_dssp             EEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred             EEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence            35777776532 111111 2224568899999888877765     36888888776422  2222 2233466889999


Q ss_pred             CCCCCEEEEEec---CCeEEEEEccCC--eE-EEEE-EcCCCCeEEEEEeCCCCeEEEeec-C----CeEEEEECcCCce
Q 016457           91 PSTPHVLHSCSS---DGTIRAWDTRSF--HE-VWSV-TAGSQEIFCFSFGGSTDYLLAAGC-G----SQIQFWDWRNKKQ  158 (389)
Q Consensus        91 ~~~~~~l~s~~~---dg~i~iwd~~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~  158 (389)
                      ++  ++|+....   ...|.++|+.++  +. +..+ ........++.|+ .++.|+..+. +    ..|..+|+.+...
T Consensus       281 Dg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~  357 (751)
T 2xe4_A          281 DT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSD  357 (751)
T ss_dssp             TS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred             CC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence            99  56665542   346888888765  22 1222 2234556667766 4666665544 3    3677778765322


Q ss_pred             eee-eeecccC--CeeEEEEecCCCCeEEEEeCCCc--EEEEec
Q 016457          159 VAC-LEESHVE--DVTQVHFVPNNQNKVVSASVDGL--ICTFDT  197 (389)
Q Consensus       159 ~~~-~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~  197 (389)
                      ... +. .+..  .+..+.+.  +..++++...++.  |.++|+
T Consensus       358 ~~~~li-~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          358 WSHVLV-DHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CCCEEE-CCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             ceeeEE-CCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            223 22 2333  34455554  4346677777775  555665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.004  Score=57.86  Aligned_cols=227  Identities=8%  Similarity=-0.032  Sum_probs=144.7

Q ss_pred             cCCCCeEEEEecCce--eeee--ecCcceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCC
Q 016457           17 CDNVNSIKRFGLKNS--IQTN--FGDDYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGP   91 (389)
Q Consensus        17 ~~~~~~i~~w~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~   91 (389)
                      .+..+.|+..++...  ...+  .+-..+..++|++.+..|+.+ ..++.|..++++.......+.........|++.+.
T Consensus        11 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~   90 (628)
T 4a0p_A           11 FSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL   90 (628)
T ss_dssp             EEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             EEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence            346678888887632  1111  123467899999976666555 45789999998754333333322245678888766


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCC
Q 016457           92 STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        92 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      +. +++++-...+.|.+.++........+...-.....+++.|..+.|+.+..  .+.|...++.... ...+. ..-..
T Consensus        91 ~~-~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~-~~~~~  167 (628)
T 4a0p_A           91 GK-NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV-PNVGR  167 (628)
T ss_dssp             TT-EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE-CSCSS
T ss_pred             CC-EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE-CCCCC
Confidence            52 45566666788999998654332223233456789999998888888763  5688888876433 33333 24456


Q ss_pred             eeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          170 VTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       170 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      ...|++++++..++++-...+.|..+|+.+...     ..+...-.....+++. . +.++++-...+.|...|..+++.
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~l~~P~glav~-~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADDLPHPFGLTQY-Q-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECCSCEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeeccCCCceEEEEE-C-CEEEEecCCCCEEEEEECCCCCc
Confidence            789999998754555556678899999985321     1222223345678886 3 45556665678999999877765


Q ss_pred             eEEe
Q 016457          250 VASF  253 (389)
Q Consensus       250 ~~~~  253 (389)
                      ...+
T Consensus       241 ~~~l  244 (628)
T 4a0p_A          241 RTII  244 (628)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.08  E-value=0.0085  Score=57.31  Aligned_cols=232  Identities=13%  Similarity=0.109  Sum_probs=136.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...|.++.-..+| +|..|+.+| +..||-.+-+..... ......|.++....++   .|..|+.+| +..||..+.+.
T Consensus        21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g---~lWigT~~G-l~~yd~~~~~f   94 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT---YLYMGTDNG-ILVYNYRADRY   94 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT---EEEEEETTE-EEEEETTTTEE
T ss_pred             cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC---cEEEEeCCC-eEEEeCCCCEE
Confidence            5679999988887 677788777 667774322211111 1123568888877666   778887766 78899887644


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee----ecccCCeeEEEEecCCCCeEEEEeCCCcE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFVPNNQNKVVSASVDGLI  192 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  192 (389)
                      ..........|.++...  ++.+.+++.+ -|..+|..+++.. .+.    ......|.++....++.  |..|+.+ -+
T Consensus        95 ~~~~~~~~~~i~~i~~~--~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl  167 (758)
T 3ott_A           95 EQPETDFPTDVRTMALQ--GDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GL  167 (758)
T ss_dssp             CCCSCCCCSCEEEEEEE--TTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EE
T ss_pred             ECcccCCCceEEEEEec--CCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CH
Confidence            32111113457777653  4577777665 6888998765432 221    01234588888887774  4445554 47


Q ss_pred             EEEecCCCCCCCccceeeec------cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccC
Q 016457          193 CTFDTGGDINDDDLLESVIN------VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTL  266 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
                      ..||..++.     ......      ....|.++... .++..|..++. +-+..+|..+++... +...          
T Consensus       168 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l----------  229 (758)
T 3ott_A          168 CRYIPSNGK-----FEGIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF----------  229 (758)
T ss_dssp             EEEETTTTE-----EEEECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE----------
T ss_pred             hhCccCCCc-----eEEecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC----------
Confidence            788876431     111110      12246777766 44555666664 458889987664322 2211          


Q ss_pred             CCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          267 DDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       267 ~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       ....|.++....+|. ++  .|+.+| +.+++..+++.
T Consensus       230 -~~~~i~~i~~d~~g~-lW--igT~~G-l~~~~~~~~~~  263 (758)
T 3ott_A          230 -HNNSIKSLALDGNGD-LL--AGTDNG-LYVYHNDTTPL  263 (758)
T ss_dssp             -EEEEEEEEEECTTCC-EE--EEETTE-EEEECCTTSCC
T ss_pred             -CCCeEEEEEEcCCCC-EE--EEeCCc-eeEEecCCCcE
Confidence             114577887777765 33  344444 78888776543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.94  E-value=0.013  Score=54.41  Aligned_cols=288  Identities=7%  Similarity=-0.043  Sum_probs=151.3

Q ss_pred             CcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      -...+.+++++++..|+.+.. .+.|...+++.........+.......|++..+   .++++-...+.|...|..+++.
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS---EEEEECTTTCSEEEEESSSCCC
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCcc
Confidence            345678999997777766644 578999988754332222212222346666543   2555555667788888766643


Q ss_pred             EEEEEcCCC-------------------------CeEEEEEe-----------CC--------------CCeEEEeecCC
Q 016457          117 VWSVTAGSQ-------------------------EIFCFSFG-----------GS--------------TDYLLAAGCGS  146 (389)
Q Consensus       117 ~~~~~~~~~-------------------------~v~~~~~~-----------~~--------------~~~l~~~~~d~  146 (389)
                      ...+.....                         ....+++.           |.              ...++..+..+
T Consensus       247 ~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~  326 (619)
T 3s94_A          247 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT  326 (619)
T ss_dssp             CEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESS
T ss_pred             cEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEccc
Confidence            322211000                         01111111           11              11122223335


Q ss_pred             eEEEEECcCCceee-eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec-cCCceeeEEEec
Q 016457          147 QIQFWDWRNKKQVA-CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFG  224 (389)
Q Consensus       147 ~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~  224 (389)
                      .|+..++....... .+....-..+..|+|++.+..++++-...+.|+.+++.+..     ...+.. .-.....+++..
T Consensus       327 ~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-----~~~v~~~~~~~p~GlAvD~  401 (619)
T 3s94_A          327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-----SQFVVTAQIAHPDGIAVDW  401 (619)
T ss_dssp             CEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECSSCSCCCEEEEET
T ss_pred             ceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc-----cEEEEECCCCCcCceEEec
Confidence            56666665443211 11101234577899998664355555567889999987431     122222 224567889885


Q ss_pred             CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          225 ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      ..++++++-+..+.|.+.++.... ...+...           .-....++++.|....+|+.-.+..+.|...+++...
T Consensus       402 ~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~-----------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~  469 (619)
T 3s94_A          402 VARNLYWTDTGTDRIEVTRLNGTM-RKILISE-----------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD  469 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCS-CEEEECT-----------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             ccCcEEEEeCCCCcEEEEeCCCCe-EEEEEEC-----------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence            566677777777899999987443 3333221           2255788999997664443322334667766665432


Q ss_pred             ccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe-cCCCeEEEEeccCC
Q 016457          305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-GEDGRLCCWLSDDS  361 (389)
Q Consensus       305 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~v~iW~~~~~  361 (389)
                      .       ..+....-.....+         ++++++..|+.+ +..+.|...+++..
T Consensus       470 ~-------~~l~~~~l~~P~Gl---------alD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          470 R-------VVLVNTSLGWPNGL---------ALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             C-------EEEECSSCSCEEEE---------EEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             c-------EEEEeCCCCCCeee---------EEcccCCEEEEEECCCCEEEEEecCCC
Confidence            2       22321222333445         677654444433 44566777776544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.93  E-value=0.013  Score=54.24  Aligned_cols=158  Identities=6%  Similarity=-0.160  Sum_probs=96.3

Q ss_pred             cceEEEeecCCCCeEEEE-ecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec--CCeEEEEEccCCe
Q 016457           39 DYVFEIVPKNDWSLMAVS-LSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS--DGTIRAWDTRSFH  115 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~  115 (389)
                      .....+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+  ..|+....  .+.|...++....
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~--g~ly~tD~g~~~~I~r~~~dG~~  161 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSS  161 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT--TEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC--CeEEEeccCCCCEEEEEECCCCc
Confidence            567889999866555555 457899999987433222222344557789999875  35554443  3566666665332


Q ss_pred             EEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          116 EVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      ........-.....+++++.++.|+.+.. .+.|..+|+..... ..+..+.......|++..+  +++++-...+.|..
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~  238 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--ILYWTDWSTHSILA  238 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C---------CCCEEESSS--EEEEECTTTCSEEE
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEE
Confidence            22223233456789999988888888765 67899999864332 2222112222346676654  36666666788999


Q ss_pred             EecCCCC
Q 016457          195 FDTGGDI  201 (389)
Q Consensus       195 ~d~~~~~  201 (389)
                      .|..++.
T Consensus       239 ~d~~tg~  245 (619)
T 3s94_A          239 CNKYTGE  245 (619)
T ss_dssp             EESSSCC
T ss_pred             EECCCCc
Confidence            8887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.89  E-value=0.0091  Score=51.17  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=121.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee--eeeec---CCCCcEEEEEEeCC---CCCCEEEEEecC-----C
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY--SGECK---GHSSTVNQISFSGP---STPHVLHSCSSD-----G  104 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~~~l~s~~~d-----g  104 (389)
                      -.....++|.|+|++ +++...|.|.+++  +++.  +..+.   ........|+|+|+   +. .++++-...     +
T Consensus        30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g-~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEP-YVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCC-EEEEEEecCCCCCcc
Confidence            345679999999984 4556679999998  3432  22111   12356889999998   31 344443332     5


Q ss_pred             eEEEEEccCCe-----EE-EEEE---cCCCCeEEEEEeCCCCeEEEeec-------------CCeEEEEECcCC------
Q 016457          105 TIRAWDTRSFH-----EV-WSVT---AGSQEIFCFSFGGSTDYLLAAGC-------------GSQIQFWDWRNK------  156 (389)
Q Consensus       105 ~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~------  156 (389)
                      .|..++...+.     .+ ..+.   ........++|.|++..+++.+.             .|.|.-+|....      
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            67788876431     11 1233   11223468999998865555442             146666665421      


Q ss_pred             ------ceeeeeeecccCCeeEEEEec-CCCCeEEEEeCCCc--------EEEEecCCCCCC--------------Cccc
Q 016457          157 ------KQVACLEESHVEDVTQVHFVP-NNQNKVVSASVDGL--------ICTFDTGGDIND--------------DDLL  207 (389)
Q Consensus       157 ------~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~--------i~i~d~~~~~~~--------------~~~~  207 (389)
                            .....+..++ .....++|+| ++. ++++-.....        |.+...  +...              ..+.
T Consensus       186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVP--GGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TTTCTTSCTTEEEECC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEECT--TCBCCTTTCCSCCCCTTSCCCS
T ss_pred             ccCCCCCCccEEEEcC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEecc--CCcCCCCcccCCCCCCCCcCCe
Confidence                  1111222123 2356789999 553 5554433332        333322  2100              0111


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCce------eEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQN------VASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ..+ ........++|.  ++.++++....+.|...++.....      ...+..            ....+..+++.|+|
T Consensus       262 ~~~-~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~------------~~~rp~~v~~~pdG  326 (352)
T 2ism_A          262 YFW-PQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS------------GFGRLREVQVGPDG  326 (352)
T ss_dssp             EEC-TTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE------------SSCCEEEEEECTTS
T ss_pred             Eec-CCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecc------------cCCCeeEEEECCCC
Confidence            122 223345677774  455666655666777777654321      111111            12567889999988


Q ss_pred             CeEEEEEecCCc
Q 016457          282 ENLWVIGGTGAG  293 (389)
Q Consensus       282 ~~~~l~~g~~dg  293 (389)
                      . +|+++...+|
T Consensus       327 ~-lyv~~~~~~g  337 (352)
T 2ism_A          327 A-LYVTTSNRDG  337 (352)
T ss_dssp             C-EEEEECSTTT
T ss_pred             c-EEEEEeCCCC
Confidence            5 4555544443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.84  E-value=0.0033  Score=52.54  Aligned_cols=188  Identities=9%  Similarity=0.024  Sum_probs=92.8

Q ss_pred             CCCeEEEEe-cC-----CeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEEEEccCCe
Q 016457           49 DWSLMAVSL-ST-----NVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRAWDTRSFH  115 (389)
Q Consensus        49 ~~~~l~~~~-~d-----~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  115 (389)
                      ++.+++.|+ .+     ..+.+||+.+++-.  ..+...... .+++.. ++  .+++.|+.+     ..+.+||+.+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVSL-HD--RIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT--EEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEEE-CC--EEEEEcCCCCCccCceEEEEECCCCC
Confidence            344556665 32     36888998776422  222211111 222222 44  577777755     358899988765


Q ss_pred             ---EEE--EEEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          116 ---EVW--SVTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       116 ---~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                         -..  .+.........+.+  ++..++.+|.+     ..+.+||+.+.+-...-.......-.+++.. ++. +++.
T Consensus        90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~  165 (301)
T 2vpj_A           90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGV-IYCL  165 (301)
T ss_dssp             TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTE-EEEE
T ss_pred             CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCE-EEEE
Confidence               222  12211222222333  45555555542     4688999887643221110111111222222 443 7777


Q ss_pred             EeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCce
Q 016457          186 ASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQN  249 (389)
Q Consensus       186 ~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~  249 (389)
                      |+.+     ..+.+||+.+..  ...+... .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGH--WTNVTPM-ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTE--EEEECCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCCCcccceEEEEeCCCCc--EEeCCCC-CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            7654     458899987542  1111111 111111223332  45677777664     4688999987643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.016  Score=51.57  Aligned_cols=262  Identities=9%  Similarity=0.014  Sum_probs=142.0

Q ss_pred             EEEEEEeCC-CCCCEEEEEecCCeEEEEEccCCeEEEEEEcC---CCCeEEEEE-------eCCCCeEEEeecCC-----
Q 016457           83 VNQISFSGP-STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSF-------GGSTDYLLAAGCGS-----  146 (389)
Q Consensus        83 v~~i~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-----  146 (389)
                      ...|+|.|. .. +++++-...+.|++.|+.++.....+...   ......++|       ++++..|+++...+     
T Consensus       141 p~~la~dp~~~~-~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKD-HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEE-EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCC-EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            568999984 31 34444444467888998876665544332   235889999       98888788877643     


Q ss_pred             --eEEEEECcC-Ccee-----eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC-------CCCCC-C---c--
Q 016457          147 --QIQFWDWRN-KKQV-----ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG-------GDIND-D---D--  205 (389)
Q Consensus       147 --~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~-~---~--  205 (389)
                        .|.+++... +...     ..+.  .......++++|++..++++-..++.|..+|+.       ++... .   .  
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence              366776433 2221     2232  123456788999665577777788899999997       44310 0   0  


Q ss_pred             -cceeee--ccCCceeeEEEecCCCcE-EEEEecCCcEEEEEcC--CCce--eEEeeccccccc---CCccCCCCCcee-
Q 016457          206 -LLESVI--NVGTSVGKVGFFGETNKH-LWCLTHIETLSIWDWK--DGQN--VASFENARSLAS---DSWTLDDVDYFV-  273 (389)
Q Consensus       206 -~~~~~~--~~~~~i~~~~~~~~~~~~-l~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~~~---~~~~~~~~~~i~-  273 (389)
                       ....+.  ........++|+ ++++. +++-+....|+.++..  .+..  ...+.+......   ..-....-.... 
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             cccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence             011211  223456789999 67775 4444566788886653  3321  123322100000   000000001122 


Q ss_pred             eeccc-------CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-----------eeeee-c-----cCC
Q 016457          274 DCHYP-------GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-----------AVVRS-V-----LPM  329 (389)
Q Consensus       274 ~~~~~-------~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~-~-----~~~  329 (389)
                      .++..       +++.  +.++-..+..|+.++ .++..       ..+. |..           +.... .     +..
T Consensus       377 gv~vd~~~~~~~~~g~--lyVaD~~N~rIr~i~-~~G~v-------~Tia-G~g~~~~~~~~~~~G~~dG~~~~~a~f~~  445 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYD--FYFVDRLNFCVRKVT-PEGIV-------STYA-GRGASTSLADGNQWGTDDGDLREVARFRD  445 (496)
T ss_dssp             EEEEECTTCCSSCCEE--EEEEEGGGTEEEEEC-TTCBE-------EEEE-ESCTTHHHHHSCSCCCCCEETTTTCCCSS
T ss_pred             EEEEccccccccCCCe--EEEEECCCCEEEEEe-CCCCE-------EEEe-cccccccccCccccccCCCCchhhhhcCC
Confidence            23332       3333  445555677788887 33432       3333 210           00001 0     111


Q ss_pred             CcccCCCCCCC-ceeEEEecCCCeEEEEeccCC
Q 016457          330 PSVQGRPAQSH-GIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       330 ~~~~~~~~s~~-~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.-  ++++++ |.++++=.....||.++++..
T Consensus       446 P~g--Iavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          446 VSG--LVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEE--EEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             CcE--EEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            112  278886 887777778889999999866

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.79  E-value=0.0076  Score=50.31  Aligned_cols=155  Identities=15%  Similarity=0.191  Sum_probs=102.5

Q ss_pred             cEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEE-EEc----C--CCCeEEEEE---eCCCCeEEEeec------
Q 016457           82 TVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWS-VTA----G--SQEIFCFSF---GGSTDYLLAAGC------  144 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~~------  144 (389)
                      --.+++|.+..  ..|+.++ ..++|..|+...+..... +..    .  ...+..+.|   .|. +.|+++..      
T Consensus        14 yPE~~~wd~~~--g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~   90 (334)
T 2p9w_A           14 TPEDTIYDRTR--QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN   90 (334)
T ss_dssp             CCSCEEEETTT--TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred             CCcCccCcCCC--CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence            34578898755  3555555 789999999975544333 211    1  113679999   577 55555333      


Q ss_pred             --------CCeEEEEECc---CCceeeeeee-c-----------ccCCeeEEEEecCCCCeEEEEeCC-CcEEEEecCCC
Q 016457          145 --------GSQIQFWDWR---NKKQVACLEE-S-----------HVEDVTQVHFVPNNQNKVVSASVD-GLICTFDTGGD  200 (389)
Q Consensus       145 --------d~~i~iwd~~---~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~  200 (389)
                              +..|..||+.   +++.+..... .           .......|+..++| +..++++.. +.|..++....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC
Confidence                    5779999999   7777655431 0           11247899999999 588988888 88888877732


Q ss_pred             CCCCccceeee------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          201 INDDDLLESVI------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       201 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      .     +..+.      ......+.|++. +++..|++....+.|..+|+..
T Consensus       170 ~-----~~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 T-----VSTFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             C-----EEEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECSS
T ss_pred             E-----EeeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCCC
Confidence            1     11111      111236789999 6777777776699999999884

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.79  E-value=0.038  Score=55.08  Aligned_cols=219  Identities=9%  Similarity=0.031  Sum_probs=130.1

Q ss_pred             cCCCCeEEEEecCc----eeeeeecCcceEEEeecCCCCeEEEEecC---------------------------------
Q 016457           17 CDNVNSIKRFGLKN----SIQTNFGDDYVFEIVPKNDWSLMAVSLST---------------------------------   59 (389)
Q Consensus        17 ~~~~~~i~~w~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------------   59 (389)
                      +..++.+++..+.+    .++++.-...+..++++|+.+.++++..+                                 
T Consensus       711 ~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1158)
T 3ei3_A          711 LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS  790 (1158)
T ss_dssp             EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred             EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence            44556688877642    22223226778888888877766554421                                 


Q ss_pred             ----------------CeEEEEeCCCceeeeeecC-CCCcEEEEEE---eCCCCCCEEEEEe----------cCCeEEEE
Q 016457           60 ----------------NVVKLYSPVTGQYSGECKG-HSSTVNQISF---SGPSTPHVLHSCS----------SDGTIRAW  109 (389)
Q Consensus        60 ----------------~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~---~~~~~~~~l~s~~----------~dg~i~iw  109 (389)
                                      +.|++.|..+.+.+..+.- ..+.+.+++.   ..+.. .+|+.|.          ..|.|.+|
T Consensus       791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~-~~lvVGTa~~~~~e~~~~~Gri~vf  869 (1158)
T 3ei3_A          791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPN-TYFIVGTAMVYPEEAEPKQGRIVVF  869 (1158)
T ss_dssp             ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCC-CEEEEEEEECCTTCSSCCCEEEEEE
T ss_pred             ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCC-EEEEEEeeecCCCCCCCCceEEEEE
Confidence                            2366777666665544431 2344555553   32222 5888876          35789999


Q ss_pred             EccCCeEEEEEEc-CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          110 DTRSFHEVWSVTA-GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       110 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      ++..++.....+. .+++|++++-- ++ +++++- ...|++|++...+.+. ....+-..+..+.....+ ++++.|..
T Consensus       870 ~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~-~~I~vgD~  944 (1158)
T 3ei3_A          870 QYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG-DFILVGDL  944 (1158)
T ss_dssp             EEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET-TEEEEEES
T ss_pred             EEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEeccC-CEEEEEEh
Confidence            9975443222221 26889998854 34 555554 4899999998665444 221122223333333345 48999988


Q ss_pred             CCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          189 DGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      -..|.++..+..   ...+..+  ......++++.+. .+ ..++.+..+|.|.++....
T Consensus       945 ~~Sv~~~~y~~~---~~~L~~~a~D~~~~~vta~~~l-d~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          945 MRSVLLLAYKPM---EGNFEEIARDFNPNWMSAVEIL-DD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             SBCEEEEEEETT---TTEEEEEEECCSCBCEEEEEEE-ET-TEEEEEETTSEEEEEEECT
T ss_pred             hheEEEEEEEcC---CCeEEEEEeecccccEEEEEEE-cc-CcEEEEcCCCcEEEEecCC
Confidence            888887765522   1122222  2245678888887 33 4788889999999887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.75  E-value=0.015  Score=49.31  Aligned_cols=235  Identities=10%  Similarity=-0.005  Sum_probs=120.8

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec---CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK---GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      ..+.++.|.+ +..++ ++..+.|.. ..+.|+.-....   .+...+..+.+.+++  ..++. +.+|.|.. ..+.++
T Consensus        80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~g~v~~-S~DgG~  152 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG--SAEMI-TNVGAIYR-TKDSGK  152 (327)
T ss_dssp             CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT--EEEEE-ETTCCEEE-ESSTTS
T ss_pred             ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC--CEEEE-eCCccEEE-EcCCCC
Confidence            4688999986 44444 455675544 333344322222   233557888887666  45554 45664422 122232


Q ss_pred             EEEEE-EcCCCCeEEEEEeCCCCeEEEeecCCeEEE-EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          116 EVWSV-TAGSQEIFCFSFGGSTDYLLAAGCGSQIQF-WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       116 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      .-..+ ......+..+++.|++. +++.+.+|.+.. .|- .+..-..+.......+..+.+.+++. + +.++.+|.++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~G~~~  228 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-L-WMIVNGGKIA  228 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSC-EEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-E-EEEETTTEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCc-EEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-E-EEEeCCceEE
Confidence            22222 23356788999997655 445555555544 342 12222222223456788999999874 4 4555678887


Q ss_pred             EEecCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          194 TFDTGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      +.+...+. ....+..- ......+..+.+. +++.+++ ++.++.| ++....++.-..+....         .....+
T Consensus       229 ~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~g~~g~i-~~S~DgG~tW~~~~~~~---------~~~~~~  295 (327)
T 2xbg_A          229 FSDPDNSE-NWGELLSPLRRNSVGFLDLAYR-TPNEVWL-AGGAGAL-LCSQDGGQTWQQDVDVK---------KVPSNF  295 (327)
T ss_dssp             EEETTEEE-EECCCBCTTSSCCSCEEEEEES-SSSCEEE-EESTTCE-EEESSTTSSCEECGGGT---------TSSSCC
T ss_pred             EecCCCCC-eeEeccCCcccCCcceEEEEec-CCCEEEE-EeCCCeE-EEeCCCCcccEEcCccC---------CCCCCe
Confidence            76422111 00111100 0122357788887 4555444 4456766 34444454333332110         012456


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      .++.|.+++.   +++++.+|.|.-++-
T Consensus       296 ~~v~~~~~~~---~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          296 YKILFFSPDQ---GFILGQKGILLRYVT  320 (327)
T ss_dssp             CEEEEEETTE---EEEECSTTEEEEECC
T ss_pred             EEEEEECCCc---eEEEcCCceEEEEcC
Confidence            7787865443   345557887766653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.72  E-value=0.015  Score=48.55  Aligned_cols=155  Identities=13%  Similarity=0.187  Sum_probs=106.5

Q ss_pred             ceEEEeecCCCCeEEEEe-cCCeEEEEeCCCceeee-eecC----C--CCcEEEEEE---eCCCCCCEEEEEec------
Q 016457           40 YVFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQYSG-ECKG----H--SSTVNQISF---SGPSTPHVLHSCSS------  102 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~-~~~~----~--~~~v~~i~~---~~~~~~~~l~s~~~------  102 (389)
                      .--+++|++....|..++ ..++|..|+...+.... .+.+    .  ...+..|.|   .|++  .++++...      
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g--rL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK--RLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC--EEEEEEEETTTTCT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC--cEEEEEcccccccc
Confidence            344788988666666666 68999999987553322 2322    1  124689999   5776  56665432      


Q ss_pred             -------CCeEEEEEcc---CCeEEEEEEcC-------------CCCeEEEEEeCCCCeEEEeecC-CeEEEEECcCCce
Q 016457          103 -------DGTIRAWDTR---SFHEVWSVTAG-------------SQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQ  158 (389)
Q Consensus       103 -------dg~i~iwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~  158 (389)
                             +..|..+|+.   +++.+......             ......++..++++..++.+.. +.|...+.... .
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                   6779999999   78877666531             1258899999888888888877 88888876533 3


Q ss_pred             eeeee--e---cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          159 VACLE--E---SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       159 ~~~~~--~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      +..+.  .   ......+.|+++|++. .|++....|.+..+|++
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCC
Confidence            32221  0   1122367999999995 77777669999999998

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.69  E-value=0.012  Score=49.20  Aligned_cols=185  Identities=10%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             CeEEEEecC----CeEEEEeCCCceeee--eecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCCeEEEE
Q 016457           51 SLMAVSLST----NVVKLYSPVTGQYSG--ECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSFHEVWS  119 (389)
Q Consensus        51 ~~l~~~~~d----~~i~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~  119 (389)
                      .+++.|+.+    ..+..||+.+.+-..  .+...... .+++.. ++  .+++.|+.++     .+.+||+.+.+-...
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVYM-AG--LVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT--EEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEEE-CC--EEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            344555432    357888887654221  12211111 122233 44  5777777543     588899887654322


Q ss_pred             E--EcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC---
Q 016457          120 V--TAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD---  189 (389)
Q Consensus       120 ~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  189 (389)
                      -  .........+.+  ++..++.+|.+     ..+.+||+.+.+-...-.......-.+++.. ++ .+++.|+.+   
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~  168 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GG-LLYAVGGYDVAS  168 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTT
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CC-EEEEEeCCCCCC
Confidence            1  111122222333  45556666654     3578889876643221110111111223332 34 366666543   


Q ss_pred             ----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          190 ----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       190 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                          ..+.+||+.+..  ...+... .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       169 ~~~~~~~~~yd~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          169 RQCLSTVECYNATTNE--WTYIAEM-STRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TEECCCEEEEETTTTE--EEEECCC-SSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CccccEEEEEeCCCCc--EEECCCC-ccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence                358889988542  1111111 111111233333  45677777664     368899988764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.67  E-value=0.021  Score=48.89  Aligned_cols=149  Identities=11%  Similarity=0.096  Sum_probs=83.8

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE--EEEE---cCCCCeEEEEEeCC---CCeEEEeecC------C
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV--WSVT---AGSQEIFCFSFGGS---TDYLLAAGCG------S  146 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~~~~~~~---~~~l~~~~~d------~  146 (389)
                      ..-..++|.|++  . |+.+..+|.|.+++  +++..  ..+.   ........|+++|+   ++.++++...      +
T Consensus        31 ~~P~~ia~~pdG--~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDG--G-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTS--C-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCC--e-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            346789999998  4 55556779999998  44422  2111   12457889999987   6777776552      6


Q ss_pred             eEEEEECcCCc-----eee-eee--ecccCCeeEEEEecCCCCeEEEEeC-------------CCcEEEEecCCCCCCCc
Q 016457          147 QIQFWDWRNKK-----QVA-CLE--ESHVEDVTQVHFVPNNQNKVVSASV-------------DGLICTFDTGGDINDDD  205 (389)
Q Consensus       147 ~i~iwd~~~~~-----~~~-~~~--~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~  205 (389)
                      .|..++.....     .+. .+.  .........|+|.|+|. ++++.+.             .|.|.-++.........
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            78888876431     111 122  01112346899999994 6666432             25666666653111100


Q ss_pred             --------cceeeeccCCceeeEEEecCCCcEEEEEec
Q 016457          206 --------LLESVINVGTSVGKVGFFGETNKHLWCLTH  235 (389)
Q Consensus       206 --------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (389)
                              ....+..--.....++|.|.++.++++-..
T Consensus       185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence                    111111112346788898546665554433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.67  E-value=0.021  Score=48.87  Aligned_cols=243  Identities=10%  Similarity=0.010  Sum_probs=125.1

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeee---ee----cCCCCcEEEEEEeCC---CCCCEEEEEec------
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSG---EC----KGHSSTVNQISFSGP---STPHVLHSCSS------  102 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---~~----~~~~~~v~~i~~~~~---~~~~~l~s~~~------  102 (389)
                      .....|+|.|+|+.|+++...|.|++++.. ++...   .+    .........|+++|+   +. .+.++-..      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-RIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-EEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCC-EEEEEEeCCCCCCC
Confidence            456799999999835556668999999854 43221   11    112345789999995   31 34444322      


Q ss_pred             -CCeEEEEEccCC----eEEEE-EEcC------CCCeEEEEEeCCCCeEEEeec-------------CCeEEEEECcCCc
Q 016457          103 -DGTIRAWDTRSF----HEVWS-VTAG------SQEIFCFSFGGSTDYLLAAGC-------------GSQIQFWDWRNKK  157 (389)
Q Consensus       103 -dg~i~iwd~~~~----~~~~~-~~~~------~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~  157 (389)
                       ...|..|++...    ..... +..-      ......++|.|++..+++.+.             .|.|.-+|....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             234666665432    11111 2211      123467999988854444433             1467666654320


Q ss_pred             ------------eeeeeeecccCCeeEEEEecCCCCeEEEEeCC--CcEEEEecCCCCCC--------------------
Q 016457          158 ------------QVACLEESHVEDVTQVHFVPNNQNKVVSASVD--GLICTFDTGGDIND--------------------  203 (389)
Q Consensus       158 ------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~--------------------  203 (389)
                                  ....+..++ .....++|+|... .|.++...  +.=.|.-+..+...                    
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence                        112222133 3367899999432 44444322  11122222211100                    


Q ss_pred             -------CccceeeeccCCceeeEEEec------CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCC
Q 016457          204 -------DDLLESVINVGTSVGKVGFFG------ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVD  270 (389)
Q Consensus       204 -------~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (389)
                             ..+... ..+...+..++|..      .++.++++.-..+.|...++..++.........         ....
T Consensus       254 ~~~~~~~~~P~~~-~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~  323 (353)
T 2g8s_A          254 GEIVAGTEQPVFY-WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT---------DRGQ  323 (353)
T ss_dssp             BSSCTTSCCCSEE-ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG---------GGCC
T ss_pred             CCCCCCccCCeEE-eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc---------CCCC
Confidence                   001111 12233566777763      136677766677788888877654332211100         0124


Q ss_pred             ceeeecccCCCCeEEEEEecCCceEE
Q 016457          271 YFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       271 ~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      .+..+++.|+|. +|+++-..+|.|+
T Consensus       324 rp~~v~~~pdG~-lyv~td~~~g~I~  348 (353)
T 2g8s_A          324 RIRDVRTGPDGY-LYVLTDESSGELL  348 (353)
T ss_dssp             CEEEEEECTTSC-EEEEECSTTEEEE
T ss_pred             ceeEEEECCCCc-EEEEEeCCCCEEE
Confidence            688999999987 4444444456443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.62  E-value=0.0095  Score=59.29  Aligned_cols=261  Identities=10%  Similarity=0.088  Sum_probs=151.6

Q ss_pred             eEEEEecCceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe
Q 016457           22 SIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS  101 (389)
Q Consensus        22 ~i~~w~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~  101 (389)
                      +|.+.|+.++....+.+-.--+.-.+|..+.||.=. ..++.|+|+++.+.++.+.- ...|.-=.|-.+.   .|+-.+
T Consensus        49 ~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~---~l~lVT  123 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN---TVALVT  123 (1630)
T ss_pred             eEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC---eeEEEc
Confidence            566666654322222111111334688887777765 78999999998887777763 4567666776554   565554


Q ss_pred             cCCeEEEEEccC-CeEEEEEEcC----CCCeEEEEEeCCCCeEEEeec-------CCeEEEEECcCCceeeeeeecccCC
Q 016457          102 SDGTIRAWDTRS-FHEVWSVTAG----SQEIFCFSFGGSTDYLLAAGC-------GSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus       102 ~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                       +..|.-|++.. ..+.+.|..|    ...|..-..+++.+.++..|-       .|.+.+|..+.+ .-+.+. +|...
T Consensus       124 -~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie-gha~~  200 (1630)
T 1xi4_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAAS  200 (1630)
T ss_pred             -CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh-HhHhh
Confidence             44699999963 3454455544    466777778888888877664       478889987643 223333 55544


Q ss_pred             eeEEEEe--cCCCCeEEEEeC---CCcEEEEecCCC-CCC---Ccccee-eec---cCCceeeEEEecCCCcEEEEEecC
Q 016457          170 VTQVHFV--PNNQNKVVSASV---DGLICTFDTGGD-IND---DDLLES-VIN---VGTSVGKVGFFGETNKHLWCLTHI  236 (389)
Q Consensus       170 v~~~~~~--~~~~~~l~~~~~---d~~i~i~d~~~~-~~~---~~~~~~-~~~---~~~~i~~~~~~~~~~~~l~~~~~d  236 (389)
                      ...+...  +....+++.+..   .+.++|.++... ...   .+.... ...   ...-..++..+ +....++..+.-
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-~k~g~iy~itk~  279 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITKY  279 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec-cccCEEEEEecC
Confidence            4333332  111123332222   268999998643 100   011111 111   13344567777 555678888999


Q ss_pred             CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          237 ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       237 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      |.|++||+.++.++..-.-            ...+|...+......+ + ++....|.|.-..+.....
T Consensus       280 G~~~~~d~~t~~~i~~~ri------------s~~~iF~~~~~~~~~g-~-~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMNRI------------SGETIFVTAPHEATAG-I-IGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             ceEEEEecccchhhhhccc------------cCCceEEeccCCCCCc-e-EEEcCCceEEEEEEccchh
Confidence            9999999999988765432            1144444444433332 2 3444677777666665443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.61  E-value=0.016  Score=48.47  Aligned_cols=185  Identities=9%  Similarity=-0.020  Sum_probs=92.1

Q ss_pred             CeEEEEec--CCeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC----CeEEEEEccCCeEEEEEEc
Q 016457           51 SLMAVSLS--TNVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD----GTIRAWDTRSFHEVWSVTA  122 (389)
Q Consensus        51 ~~l~~~~~--d~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~  122 (389)
                      .+++.|+.  ...+.+||..+++-.  ..+......- +++.. ++  .+++.|+.+    ..+.+||+.+.+-...-..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFW-DN--VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEE-TT--EEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEE-CC--EEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            35556654  357889998876422  2222211122 22222 44  577777755    5688899887754332221


Q ss_pred             C--CCCeEEEEEeCCCCeEEEeecC------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC------
Q 016457          123 G--SQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV------  188 (389)
Q Consensus       123 ~--~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------  188 (389)
                      .  ......+.+  ++..++.+|.+      ..+.+||+.+.+-...-.......-.+++.. ++. +++.|+.      
T Consensus        89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~  164 (306)
T 3ii7_A           89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGL-IYVCGGSLGNNVS  164 (306)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEESCTTT
T ss_pred             CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCE-EEEECCCCCCCCc
Confidence            1  222222333  45555666654      4689999887643221110111111222222 443 6666654      


Q ss_pred             ---CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          189 ---DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       189 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                         -..+.+||+.+..  ...+... .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       165 ~~~~~~~~~yd~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          165 GRVLNSCEVYDPATET--WTELCPM-IEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CEECCCEEEEETTTTE--EEEECCC-SSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             ccccceEEEeCCCCCe--EEECCCc-cchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence               3458899988542  1111111 111111223333  45667776654     468889987764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.51  E-value=0.026  Score=47.02  Aligned_cols=187  Identities=7%  Similarity=-0.039  Sum_probs=94.1

Q ss_pred             CCCeEEEEecC-----CeEEEEeCCCce-----eeeeecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEEEEccC
Q 016457           49 DWSLMAVSLST-----NVVKLYSPVTGQ-----YSGECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRAWDTRS  113 (389)
Q Consensus        49 ~~~~l~~~~~d-----~~i~iw~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~iwd~~~  113 (389)
                      ++.+++.|+.+     ..+.+||+.+++     .+..+...... .+++.. ++  .+++.|+.+     ..+.+||+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL-GD--MIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE-TT--EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE-CC--EEEEEcccCCCcccceEEEEcCCC
Confidence            56677777754     468999987755     22222211111 222222 44  577777654     3588899887


Q ss_pred             CeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          114 FHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       114 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      .+-...-...  ...-.++.+  ++..++.+|.+     ..+.+||+.+.+-...-.......-.+++.. ++ .+++.|
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~G  213 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-ND-HIYVVG  213 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEC
T ss_pred             CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CC-EEEEEe
Confidence            6544322221  122222222  45555555543     5689999887643221110111111222222 34 377777


Q ss_pred             eCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          187 SVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       187 ~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                      +.+     ..+.+||+.+..  ...+... .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDS--WTTVTSM-TTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTE--EEEECCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCc--EEECCCC-CCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            764     468999998542  1111111 111111223332  45677777655     357788877653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.45  E-value=0.031  Score=47.55  Aligned_cols=197  Identities=11%  Similarity=0.022  Sum_probs=109.6

Q ss_pred             ceEEEeecCCCCeEEEE------------ecCCeEEEEeCCC--ceee-eeecC-----CCCcEEEEEEeCC--CCCCEE
Q 016457           40 YVFEIVPKNDWSLMAVS------------LSTNVVKLYSPVT--GQYS-GECKG-----HSSTVNQISFSGP--STPHVL   97 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~------------~~d~~i~iw~~~~--~~~~-~~~~~-----~~~~v~~i~~~~~--~~~~~l   97 (389)
                      ..-.++..|+|..++++            ..+|.|.++|.++  ++.. ..+.+     ..-....|.+.++  +. .+|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~-~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT-VYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC-EEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc-EEE
Confidence            44567778887544443            1689999999873  2211 12222     2235677777663  32 234


Q ss_pred             EEE-ec--CCeEEEEEccCC----eEEEEEEcC-CCCeEEEEEeCCCCeEEEeec-----------------CCeEEEEE
Q 016457           98 HSC-SS--DGTIRAWDTRSF----HEVWSVTAG-SQEIFCFSFGGSTDYLLAAGC-----------------GSQIQFWD  152 (389)
Q Consensus        98 ~s~-~~--dg~i~iwd~~~~----~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd  152 (389)
                      +.+ ..  +.+|.+|++...    ..+..+.+. -...+.+.+.+++...++...                 .|.|.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 33  467888887643    223344432 345789999977655444321                 24555555


Q ss_pred             CcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecC-CCcEEE
Q 016457          153 WRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE-TNKHLW  231 (389)
Q Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~  231 (389)
                      .  ++ +..+. ..-...+.|+|+|+++.++++-+..+.|..|++.... .......+ ........+++. . +|.+.+
T Consensus       210 ~--~~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi~vD-~e~G~lwv  282 (355)
T 3sre_A          210 P--ND-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNISVD-PVTGDLWV  282 (355)
T ss_dssp             T--TC-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEEEEC-TTTCCEEE
T ss_pred             C--Ce-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceEEEe-CCCCcEEE
Confidence            4  32 22232 2334578999999997455555668899999997321 11111122 335566778887 5 466655


Q ss_pred             EEecC-CcEEEEEc
Q 016457          232 CLTHI-ETLSIWDW  244 (389)
Q Consensus       232 ~~~~d-~~i~i~d~  244 (389)
                      ++..+ +.|..|+.
T Consensus       283 a~~~~g~~v~~~~P  296 (355)
T 3sre_A          283 GCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEESCHHHHHSCCT
T ss_pred             EecCCceEEEEECC
Confidence            55433 24444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.39  E-value=0.043  Score=45.83  Aligned_cols=187  Identities=8%  Similarity=-0.019  Sum_probs=94.6

Q ss_pred             CCCeEEEEecC----CeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC------CeEEEEEccCCeE
Q 016457           49 DWSLMAVSLST----NVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD------GTIRAWDTRSFHE  116 (389)
Q Consensus        49 ~~~~l~~~~~d----~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~  116 (389)
                      ++.+++.|+.+    ..+.+||+.+++-.  ..+......- +++.. ++  .+++.|+.+      ..+.+||+.+.+-
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACAA-EG--KIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEEE-TT--EEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEEE-CC--EEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            56677777754    67889998876432  2222111111 22222 44  577777765      4588999887754


Q ss_pred             EEE--EEcCCCCeEEEEEeCCCCeEEEeec---------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          117 VWS--VTAGSQEIFCFSFGGSTDYLLAAGC---------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       117 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ...  +......-..+.+  ++..++.+|.         -..+.+||+.+.+-...-.......-.+++.. ++ .+++.
T Consensus       131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~  206 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD-KIFAV  206 (306)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEE
T ss_pred             EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CC-EEEEE
Confidence            332  1111122222222  4555555553         24588999887643221110111112223333 44 37777


Q ss_pred             EeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          186 ASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       186 ~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                      |+.+     ..+.+||+.+..  ...+..+. ....-..++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNE--WKMVSPMP-WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTE--EEECCCCS-CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eCCCCCCCCceEEEeeCCCCc--EEECCCCC-CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            7653     458899988542  11111111 11111223332  45677777754     467888887653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.32  E-value=0.064  Score=45.90  Aligned_cols=234  Identities=11%  Similarity=0.037  Sum_probs=123.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce-eeeeec---CCCCcEEEEEEeCC---CCCCEEEEEec---C----
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ-YSGECK---GHSSTVNQISFSGP---STPHVLHSCSS---D----  103 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~~~l~s~~~---d----  103 (389)
                      -.....|+|.|+|+ |+++..+|.|++++ .+++ .+..+.   ........|+++|+   +. .++++-..   +    
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKS-WVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCC-EEEEEEeccCCCCCcc
Confidence            35577999999997 55556679999997 4454 222211   12356889999997   31 34444332   3    


Q ss_pred             CeEEEEEccCC-------eEE-EEEEcC-CCCeEEEEEeCCCCeEEEeec-------------CCeEEEEECcCCc----
Q 016457          104 GTIRAWDTRSF-------HEV-WSVTAG-SQEIFCFSFGGSTDYLLAAGC-------------GSQIQFWDWRNKK----  157 (389)
Q Consensus       104 g~i~iwd~~~~-------~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~----  157 (389)
                      ..|..|+....       +.+ ..+... ......++|.|++..+++.+.             .|.|.-++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777776543       111 123321 223567999998876665443             1456656543210    


Q ss_pred             ---eeeeeeecccCCeeEEEEec-CCCCeEEEEeCCC---cEEEEecCCC--------CC----CCccceeeeccCCcee
Q 016457          158 ---QVACLEESHVEDVTQVHFVP-NNQNKVVSASVDG---LICTFDTGGD--------IN----DDDLLESVINVGTSVG  218 (389)
Q Consensus       158 ---~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~---~i~i~d~~~~--------~~----~~~~~~~~~~~~~~i~  218 (389)
                         ....+..++. ....++|+| ++. ++++-....   .|.+...-..        ..    ...++..+........
T Consensus       185 pf~~~~i~a~G~r-np~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          185 PFPNSPIWSYGHR-NPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSTTCCEEEECCS-CCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCcEEEEccC-CcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence               0112221333 356899999 553 554433222   2444322110        00    0011112111234567


Q ss_pred             eEEEec------CCCcEEEEEecCCcEEEEEcCCC-cee--EEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          219 KVGFFG------ETNKHLWCLTHIETLSIWDWKDG-QNV--ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       219 ~~~~~~------~~~~~l~~~~~d~~i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      .++|..      .++.++++....+.|...++... +..  ..+...           ....+..+++.|||. +|+++
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----------~~~rp~~v~~~pDG~-lyv~~  329 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-----------VFGRLRDVVIDDDGG-ILIST  329 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-----------TSCCEEEEEECTTSC-EEEEE
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-----------CCCCeeEEEECCCCc-EEEEE
Confidence            777741      35666666666678888887753 221  122110           125678899999885 44444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.29  E-value=0.042  Score=47.43  Aligned_cols=157  Identities=15%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             CCCeEEEeecCCeEEEEECcCCceeeeeeecc---cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC-CC-----c
Q 016457          135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESH---VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN-DD-----D  205 (389)
Q Consensus       135 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~-----~  205 (389)
                      ++..++++- ++.||.-++......+.+...+   -..+..+..+|+|. +|+..+ +..|.|..+..+.. ..     .
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCccccccc
Confidence            444444443 3788887776444444444221   22688899999995 777775 56899988873221 11     0


Q ss_pred             --cceeeec------cCCceeeEEEecCC--CcEEEEEecCCcEEEEEcCCCc-eeEEeecccccccCCcc-CCCCCcee
Q 016457          206 --LLESVIN------VGTSVGKVGFFGET--NKHLWCLTHIETLSIWDWKDGQ-NVASFENARSLASDSWT-LDDVDYFV  273 (389)
Q Consensus       206 --~~~~~~~------~~~~i~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~  273 (389)
                        ..+.+.-      ...+|..+.|+|-.  +..|++-..|+.|++||+.... ....+.....    .+. -.....+.
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~----~fg~d~~~~ev~  183 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN----SFGLDARVNDIT  183 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS----EEESCSSCCCEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcccc----ccCCCcccceEE
Confidence              1111111      24679999999633  4589999999999999998521 1113321100    000 01336788


Q ss_pred             eecccCCCCeEEEEEecCCceEEEE
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYF  298 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~  298 (389)
                      +++|..++=.+|+++.+.+|.|+-.
T Consensus       184 S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          184 DLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999998878888888888988765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.24  E-value=0.066  Score=44.55  Aligned_cols=185  Identities=11%  Similarity=0.053  Sum_probs=92.7

Q ss_pred             CCCeEEEEecC-----CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecCC-----eEEEEEccCCeE
Q 016457           49 DWSLMAVSLST-----NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSDG-----TIRAWDTRSFHE  116 (389)
Q Consensus        49 ~~~~l~~~~~d-----~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~  116 (389)
                      ++.+++.|+.+     ..+.+||..+.+-  +..+...... .+++.. ++  .+++.|+.++     .+.+||+.+.+-
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVL-NG--LLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT--EEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEEE-CC--EEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            56677777754     3588899876642  2222211111 222222 44  5777777653     477888877654


Q ss_pred             EEE--EEcCCCCeEEEEEeCCCCeEEEeecC-------CeEEEEECcCCceee--eeeecccCCeeEEEEecCCCCeEEE
Q 016457          117 VWS--VTAGSQEIFCFSFGGSTDYLLAAGCG-------SQIQFWDWRNKKQVA--CLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       117 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ...  +........++.+  ++..++.+|.+       ..+.+||+.+.+-..  .+.  ....-.+++.. ++ .+++.
T Consensus       137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~-~~-~iyv~  210 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS--TRRSGAGVGVL-NN-LLYAV  210 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS--SCCBSCEEEEE-TT-EEEEE
T ss_pred             eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc--cccccccEEEE-CC-EEEEE
Confidence            332  1111122222222  45555555542       458899988764322  222  11111223333 34 37777


Q ss_pred             EeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCc
Q 016457          186 ASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQ  248 (389)
Q Consensus       186 ~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~  248 (389)
                      |+.+     ..+.+||+.+..  ...+.... ....-..++.  .++.+++.|+.++     .+.+||+.+.+
T Consensus       211 GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTTNA--WRQVADMN-MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTTTE--EEEECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCC--EeeCCCCC-CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            7654     368899988542  11111111 1111122333  2456777777553     47888887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.24  E-value=0.047  Score=45.64  Aligned_cols=187  Identities=9%  Similarity=-0.011  Sum_probs=93.0

Q ss_pred             cCCCCeEEEEec----CCeEEEEeCCCceeee--eecCCCCcEEEEEEeCCCCCCEEEEEec----C-----CeEEEEEc
Q 016457           47 KNDWSLMAVSLS----TNVVKLYSPVTGQYSG--ECKGHSSTVNQISFSGPSTPHVLHSCSS----D-----GTIRAWDT  111 (389)
Q Consensus        47 ~~~~~~l~~~~~----d~~i~iw~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~----d-----g~i~iwd~  111 (389)
                      .-++.+++.|+.    -..+.+||..+++-..  .+...... .+++.. ++  .+++.|+.    +     ..+.+||+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV-GG--LLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT--EEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE-CC--EEEEECCCcCCCCCCeecceEEEECC
Confidence            335566666763    2468899987764222  22211111 122333 44  57777765    2     35788898


Q ss_pred             cCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCceee--eeeecccCCeeEEEEecCCCCe
Q 016457          112 RSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQVA--CLEESHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       112 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~  182 (389)
                      .+.+-...  +.........+.+  ++..++.+|.+     ..+.+||+.+.+-..  .+.  ....-.+++.. ++ .+
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~-~~-~i  171 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRIGVGVAVL-NR-LL  171 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCBSCEEEEE-TT-EE
T ss_pred             CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--ccccceEEEEE-CC-EE
Confidence            87653322  1111122222333  45555555542     468899988764322  222  11111222222 44 37


Q ss_pred             EEEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          183 VVSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       183 l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                      ++.|+.+     ..+.+||+.+..  ...+... .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNE--WRMITAM-NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTE--EEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCe--EeeCCCC-CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7777654     458899987542  1111111 111111223333  45677777664     468899988764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.22  E-value=0.073  Score=44.64  Aligned_cols=181  Identities=10%  Similarity=0.027  Sum_probs=89.1

Q ss_pred             eEEEEecCCeEEEEeCCCceeee-eecCC-CCcEEEEEEeCCCCCCEEEEEec----C-------CeEEEEEccCCeEEE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSG-ECKGH-SSTVNQISFSGPSTPHVLHSCSS----D-------GTIRAWDTRSFHEVW  118 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~-~~~~~-~~~v~~i~~~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~  118 (389)
                      +++.|+  ..+.+||+.+++-.. .+... ...-.+++. .++  .+++.|+.    +       ..+..||+.+.+-..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT-KEN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-TTC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE-ECC--EEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            445555  579999998876322 22111 111222333 345  57777774    1       126778887765422


Q ss_pred             EEEcC--CCCeEEEEEeCCCCeEEEeecC--------CeEEEEECcCCcee--eeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          119 SVTAG--SQEIFCFSFGGSTDYLLAAGCG--------SQIQFWDWRNKKQV--ACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       119 ~~~~~--~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      .-...  .... +++.. ++..++.+|.+        ..+.+||+.+.+-.  ..+.  ....-.+++. -++ .+++.|
T Consensus        82 ~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~-~~~-~iyv~G  155 (315)
T 4asc_A           82 MPPLPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP--YVVYGHTVLS-HMD-LVYVIG  155 (315)
T ss_dssp             CCCBSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEE-ETT-EEEEEC
T ss_pred             CCCCCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC--CcccceeEEE-ECC-EEEEEe
Confidence            11111  1111 22222 44555555532        46899998876422  2222  1111122333 234 377777


Q ss_pred             eC-C-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCC-----cEEEEEcCCCc
Q 016457          187 SV-D-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE-----TLSIWDWKDGQ  248 (389)
Q Consensus       187 ~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~  248 (389)
                      +. +     ..+.+||..+..  ...+... .....-.+++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       156 G~~~~~~~~~~~~~yd~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKFE--WKELAPM-QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTTE--EEECCCC-SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCe--EEECCCC-CCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            75 2     468899988542  1111111 111111223332  456777777654     58889987764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.011  Score=49.98  Aligned_cols=194  Identities=6%  Similarity=-0.066  Sum_probs=109.5

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCC-CCcEEEEEEe--CCCCCCEEEEE--ecCCeEEEEEccCCeEEEEEEcC--
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGH-SSTVNQISFS--GPSTPHVLHSC--SSDGTIRAWDTRSFHEVWSVTAG--  123 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~--  123 (389)
                      .++++++.||.|.-+|.++|+.+..+... ..++....-.  +.+  ..++.+  +.||.|..++..+|.....+...  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~--~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET--YETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS--SEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC--CcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            47888999999999999999999888653 1222221100  011  134433  58999999999888666555532  


Q ss_pred             --CCCeEE---EEE-e----CCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC------eeEEEEe-----cCCCCe
Q 016457          124 --SQEIFC---FSF-G----GSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED------VTQVHFV-----PNNQNK  182 (389)
Q Consensus       124 --~~~v~~---~~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~~-----~~~~~~  182 (389)
                        ..++..   ... .    ..++.+++++.+|.+...|+++|+.+.++..+....      ..|....     ..+ ..
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~-~~  167 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE-NM  167 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C-CE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC-Ce
Confidence              222221   000 0    046788899999999999999999999887221111      1122211     112 36


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCcc-ceeeeccCC--cee-eEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          183 VVSASVDGLICTFDTGGDINDDDL-LESVINVGT--SVG-KVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~--~i~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      ++.+..+..+.+.+ +++. .... .........  .+. .-... .++.+ +.++.||.|.-+|..+++.+-
T Consensus       168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777777766 3332 1100 111111000  000 00001 23444 557889999999998887653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.20  E-value=0.088  Score=45.04  Aligned_cols=147  Identities=11%  Similarity=0.088  Sum_probs=82.4

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe-EEEEEE---cCCCCeEEEEEeCC---CCeEEEeec----C----
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH-EVWSVT---AGSQEIFCFSFGGS---TDYLLAAGC----G----  145 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----  145 (389)
                      .....|+|.|++   .|+.+..+|.|++++ .+++ .+..+.   ........|+++|+   ++.|+++..    +    
T Consensus        29 ~~P~~ia~~pdG---~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGG---RYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETT---EEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCC---eEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            456789999998   466667779999997 4454 222211   12356889999987   677777654    2    


Q ss_pred             CeEEEEECcCC-------cee-eeeeecccCCeeEEEEecCCCCeEEEEeC-------------CCcEEEEecCCCCCCC
Q 016457          146 SQIQFWDWRNK-------KQV-ACLEESHVEDVTQVHFVPNNQNKVVSASV-------------DGLICTFDTGGDINDD  204 (389)
Q Consensus       146 ~~i~iwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~  204 (389)
                      ..|..|+....       +.+ ..+..........|+|.|+|. ++++.+.             .|.|.-++........
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            56777776543       111 112211112346799999995 6666432             2456666665321110


Q ss_pred             cc---ceee-eccCCceeeEEEecCCCcEEEEE
Q 016457          205 DL---LESV-INVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       205 ~~---~~~~-~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      .+   ...+ .++ .....++|.+.++.++++-
T Consensus       184 npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          184 NPFPNSPIWSYGH-RNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             SSSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence            00   1111 122 2356788985366554443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.18  E-value=0.088  Score=45.50  Aligned_cols=144  Identities=13%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             ecCCCCeEEEEecCCeEEEEeCCCceeeeeecCC----CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe------
Q 016457           46 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGH----SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH------  115 (389)
Q Consensus        46 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------  115 (389)
                      .+.+|..++++. ++.||.-++..+...+.+...    -..|..+..+|+|  .+||..+. ..|.|-.+..+.      
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG--~lLAl~g~-~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG--DLLCLFND-NEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS--SEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC--CEEEEecC-CeEEEEEecCccccCccc
Confidence            345666666665 578888887754444444332    2357889999999  68887764 478888876221      


Q ss_pred             ------EEEEEEcC------CCCeEEEEEeCC---CCeEEEeecCCeEEEEECcCCc--eeeeee--------ecccCCe
Q 016457          116 ------EVWSVTAG------SQEIFCFSFGGS---TDYLLAAGCGSQIQFWDWRNKK--QVACLE--------ESHVEDV  170 (389)
Q Consensus       116 ------~~~~~~~~------~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~--~~~~~~--------~~~~~~v  170 (389)
                            ..+.+...      ..+|..+.|+|-   +..|++-..|+.|++||+....  +. .+.        ......|
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                  22344432      467999999995   5679999999999999998522  22 222        0122568


Q ss_pred             eEEEEecCCCCeEEEEe--CCCcEEEE
Q 016457          171 TQVHFVPNNQNKVVSAS--VDGLICTF  195 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~--~d~~i~i~  195 (389)
                      .+++|.+++ -.|...+  ..|.|+-.
T Consensus       183 ~S~~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence            899999976 4666654  77877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.16  E-value=0.03  Score=43.62  Aligned_cols=174  Identities=11%  Similarity=-0.014  Sum_probs=85.7

Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCc-cceeeecc--CCceeeEEEecCCCcEEEEEecCCcEEEEEc
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD-LLESVINV--GTSVGKVGFFGETNKHLWCLTHIETLSIWDW  244 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~  244 (389)
                      ..+..++|+|++. +.++  .+|.++-.+..+.....- ......+.  -..-..+.|. +++.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeCC
Confidence            4678999999884 5555  688877777653221100 00111111  0113567776 77766555  6698887775


Q ss_pred             CCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe-cccceee
Q 016457          245 KDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV-GGHTAVV  323 (389)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~h~~~v  323 (389)
                      .+...-.-+.....+....|     ..+..+.+.|+|.   |.+.. |+.++-....+....... ...... .+.-..-
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw-----~~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl-~~~~~~g~~g~~~y  184 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGW-----SGFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWL-ARATKIGQGGWDTF  184 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSG-----GGEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHH-HHCEEEESSSGGGE
T ss_pred             CcCCCCceeccccEeccCCC-----CceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccc-cccceeccCCcceE
Confidence            33211111111111111111     4578899999996   34444 777543322221110000 001111 0111122


Q ss_pred             eeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccchhhhh
Q 016457          324 RSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINRSWIS  370 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~~~~~  370 (389)
                      +-+         .|.++|.+.+..  +|  ++|...+.......++.
T Consensus       185 r~l---------~f~~~G~l~~v~--~g--~~Y~~~~p~~~~~~~~~  218 (236)
T 1tl2_A          185 KFL---------FFSSVGTLFGVQ--GG--KFYEDYPPSYAYDNWLA  218 (236)
T ss_dssp             EEE---------EECTTSCEEEEE--TT--EEEEESCCCSTTCCHHH
T ss_pred             EEE---------EECCCCcEEEEe--CC--eEEecCCccccCcchhh
Confidence            223         678888776665  66  67777766555555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.11  E-value=0.12  Score=44.90  Aligned_cols=221  Identities=10%  Similarity=0.091  Sum_probs=131.7

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY  138 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  138 (389)
                      +.+|.|.|+.++..+..-.-.   --+.-.+|..  +.++--. ..++.|+|+++.+.+..+... ..|.--.|- +...
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~--~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWi-s~~~  118 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPAS--KVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI-SLNT  118 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC---CSEEEECSSS--SCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEE-ETTE
T ss_pred             CCeEEEEECCCCCcceecccc---cceeeeCCCC--cEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEec-CCCe
Confidence            347888898876544322211   1234567776  5666654 678999999999999998875 567777886 4444


Q ss_pred             EEEeecCCeEEEEECcC-Cceeeeeeecc----cCCeeEEEEecCCCCeEEEEe-------CCCcEEEEecCCCCCCCcc
Q 016457          139 LLAAGCGSQIQFWDWRN-KKQVACLEESH----VEDVTQVHFVPNNQNKVVSAS-------VDGLICTFDTGGDINDDDL  206 (389)
Q Consensus       139 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~  206 (389)
                      |...+ +..|+-|++.. ..+++.+. .|    ...|..-..+++.+ +++..+       -.|.+.+|..+.+     .
T Consensus       119 l~lVT-~taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~er~-----~  190 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRK-----V  190 (494)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEESTTC-----C
T ss_pred             EEEEc-CCeeEEecccCCCCchhhee-cchhcccceEEEEEECCCCC-eEEEEeecccCCcccceEEEeecccc-----c
Confidence            44444 47999999974 34555554 33    34577777788886 554433       2467889988843     2


Q ss_pred             ceeeeccCCceeeEEEec--CCCcEEEEEecC---CcEEEEEcCCC---c-----eeEEeecccccccCCccCCCCCcee
Q 016457          207 LESVINVGTSVGKVGFFG--ETNKHLWCLTHI---ETLSIWDWKDG---Q-----NVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~d---~~i~i~d~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      -..+.+|-..-..+.+..  ....+++.+...   +.++|-++...   .     ....+....   .     ...+...
T Consensus       191 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp---e-----~~~DFPv  262 (494)
T 1bpo_A          191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP---E-----AQNDFPV  262 (494)
T ss_dssp             EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT---T-----STTCCEE
T ss_pred             cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc---c-----cccCcee
Confidence            333444433332232210  011233333332   68888887532   1     111111000   0     0235566


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      ++..++.-.  ++..-+.-|.|++||++++..
T Consensus       263 amqvs~kyg--viyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          263 AMQISEKHD--VVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEETTTT--EEEEEETTSEEEEEETTTCCE
T ss_pred             EEEecccCC--EEEEEecCceEEEEeccccee
Confidence            777787766  555666789999999999876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.07  E-value=0.1  Score=44.54  Aligned_cols=65  Identities=5%  Similarity=-0.061  Sum_probs=33.9

Q ss_pred             CCCeEEEEec-CCeEEEEeCCC--c--eeeeeecCCCCcEEEEEEeCCCCCCEEEEEec-C---------CeEEEEEccC
Q 016457           49 DWSLMAVSLS-TNVVKLYSPVT--G--QYSGECKGHSSTVNQISFSGPSTPHVLHSCSS-D---------GTIRAWDTRS  113 (389)
Q Consensus        49 ~~~~l~~~~~-d~~i~iw~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-d---------g~i~iwd~~~  113 (389)
                      ++.+++.|+. ...+.+||+.+  .  +.+..+......-.+++.. ++  .+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~--~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG--NLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT--EEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC--EEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            4555566654 34688888863  2  2222222111111223333 44  57777765 2         3588899887


Q ss_pred             CeE
Q 016457          114 FHE  116 (389)
Q Consensus       114 ~~~  116 (389)
                      .+-
T Consensus        96 ~~W   98 (357)
T 2uvk_A           96 NSW   98 (357)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.00  E-value=0.26  Score=47.02  Aligned_cols=237  Identities=9%  Similarity=0.079  Sum_probs=130.4

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      .|.++...+++..|.+|+. +-+..++..+++......-....|.++....++   .|..|+.+ -+.+++..+++....
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~~~~~~~~~~  266 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG---DLLAGTDN-GLYVYHNDTTPLQHI  266 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC---CEEEEETT-EEEEECCTTSCCEEE
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC---CEEEEeCC-ceeEEecCCCcEEEE
Confidence            4788888877776777774 458888987765432211123458888877666   56666655 478888776544322


Q ss_pred             EEc-------CCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee------ecccCCeeEEEEecCCCCeEEEE
Q 016457          120 VTA-------GSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE------ESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       120 ~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      ...       ....|.++.... .+.|.+++..| +.++....  ....+.      ......|.++.-..+|.  |..|
T Consensus       267 ~~~~~~~~~l~~~~i~~i~~D~-~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--lWiG  340 (758)
T 3ott_A          267 IHDSRNIQSLTNNIIWNIFADQ-EHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGF--YWFG  340 (758)
T ss_dssp             CCCTTCTTSCSCSCEEEEEECT-TCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCC--EEEE
T ss_pred             EcCCCCcCcCCcCeEEEEEEcC-CCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCC--EEEe
Confidence            111       134688888874 45666666666 54443221  111111      01234688888877773  5556


Q ss_pred             eCCCcEEEEecCCCCCCCccceeee-------ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccc
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVI-------NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSL  259 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  259 (389)
                      +.+| +..++..++..  .....+.       .....|.++.-. .++ .|..|+ ++-|..||..+++... +......
T Consensus       341 t~~G-l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g-~lWigt-~~GL~~~~~~~~~~~~-~~~~~~~  413 (758)
T 3ott_A          341 GANG-LIRFTDPAGER--HDAIWYRMGDKTYPLSHNRIRHIYED-KEQ-QLWIAT-DGSINRYDYATRQFIH-YNIVDNT  413 (758)
T ss_dssp             ETTE-EEEESCTTSSC--CCCEEECTTCSSSCCSCSCEEEEEEC-TTS-CEEEEE-TTEEEEEETTTTEEEE-EEEECCC
T ss_pred             eCCc-ceeeccccccc--ceeEEeccCCcCCCCCCCceEEEEEC-CCC-CEEEEe-CCcHhhcCcCCCcEEE-eecCCCc
Confidence            6554 66777654211  0111111       012356777665 444 466666 4578899988765432 2210000


Q ss_pred             ccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          260 ASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ..     .....|.++....+|.   |..|+..+-|.+++..+
T Consensus       414 ~~-----~~~~~v~~i~~d~~g~---lWigT~~~Gl~~~~~~~  448 (758)
T 3ott_A          414 GT-----YNTNWTYYIFEDTAGQ---LWISTCLGGIFVVDKHK  448 (758)
T ss_dssp             -------CBSSSEEEEEECTTSE---EEEEESSSCEEEEEHHH
T ss_pred             CC-----CCCceEEEEEEcCCCC---EEEEECCCceEEEcccc
Confidence            00     0124577777666653   34455555688888653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.97  E-value=0.14  Score=43.40  Aligned_cols=237  Identities=15%  Similarity=0.085  Sum_probs=123.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee--eeee----cCCCCcEEEEEEeCC----CCCCEEEEE--ecCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY--SGEC----KGHSSTVNQISFSGP----STPHVLHSC--SSDGT  105 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~----~~~~~~v~~i~~~~~----~~~~~l~s~--~~dg~  105 (389)
                      -.....|+|.|||+++++--..|.|++++..+++.  +..+    .........|+++|+    +  .+.++-  ..++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g--~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH--MVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC--EEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC--EEEEEEecCCCCE
Confidence            45678999999998666655489999998765543  2212    123456899999985    3  333332  23445


Q ss_pred             EEEEEccCC----------eEEE-EEEc-CCCCeEEEEEeCCCCeEEEeec-------------CCeEEEEECcCCc---
Q 016457          106 IRAWDTRSF----------HEVW-SVTA-GSQEIFCFSFGGSTDYLLAAGC-------------GSQIQFWDWRNKK---  157 (389)
Q Consensus       106 i~iwd~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~---  157 (389)
                      |.-|.+..+          +.+. .+.. ....-..|.|.|++..+++.+.             .|.|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            655655431          1221 2221 1234567999998876666553             2455555543210   


Q ss_pred             ----eeeeeeecccCCeeEEEEecCCCCeEEEE-eCCCcEEEEecCCCCCC--------------CccceeeeccCCcee
Q 016457          158 ----QVACLEESHVEDVTQVHFVPNNQNKVVSA-SVDGLICTFDTGGDIND--------------DDLLESVINVGTSVG  218 (389)
Q Consensus       158 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~~~i~  218 (389)
                          ....+..+|. ....++|+|++. ++++- +.++.-.|--+..+...              ..++..+..+.....
T Consensus       189 nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~  266 (347)
T 3das_A          189 NPFPGSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS  266 (347)
T ss_dssp             CSSTTCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred             CCCCCCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence                0112222343 356899999874 44443 22322222222222110              111222222223566


Q ss_pred             eEEEecCCCcEEEEEecCCcEEEEEcCCCcee----EEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCc
Q 016457          219 KVGFFGETNKHLWCLTHIETLSIWDWKDGQNV----ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAG  293 (389)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg  293 (389)
                      .++|.  .+.++...-..+.|....+.....+    ..+.+            ....+.+++..|||. +|+++...||
T Consensus       267 G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~------------~~gR~~dv~~~pDG~-lyv~td~~~g  330 (347)
T 3das_A          267 GIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG------------EYGRLRTVAPAGGDK-LWLVTSNTDG  330 (347)
T ss_dssp             EEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT------------TSSCEEEEEEEETTE-EEEEECTTSS
T ss_pred             ceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecC------------CCCCccEEEECCCCc-EEEEEcCCCC
Confidence            77886  3555555555566666666544321    11111            225677888888774 3444444444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.96  E-value=0.097  Score=43.71  Aligned_cols=185  Identities=9%  Similarity=0.072  Sum_probs=92.4

Q ss_pred             CCCeEEEEec----C-----CeEEEEeCCCcee--eeeecCCCCcEEEEEEeCCCCCCEEEEEecC-----CeEEEEEcc
Q 016457           49 DWSLMAVSLS----T-----NVVKLYSPVTGQY--SGECKGHSSTVNQISFSGPSTPHVLHSCSSD-----GTIRAWDTR  112 (389)
Q Consensus        49 ~~~~l~~~~~----d-----~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~iwd~~  112 (389)
                      ++.+++.|+.    +     ..+.+||+.+.+-  +..+......- +++.. ++  .+++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~--~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-DG--HIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-TT--EEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-CC--EEEEEcCCCCCcccccEEEECCC
Confidence            5667777765    2     4688899877642  22222111122 22222 44  577776643     357888988


Q ss_pred             CCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecC-----CeEEEEECcCCcee--eeeeecccCCeeEEEEecCCCCeE
Q 016457          113 SFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCG-----SQIQFWDWRNKKQV--ACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       113 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      +.+-...  +......-.++.+  ++..++.+|.+     ..+.+||+.+.+-.  ..+.  ....-.+++.. ++ .++
T Consensus       146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~-~~-~iy  219 (308)
T 1zgk_A          146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN--TIRSGAGVCVL-HN-CIY  219 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEE-TT-EEE
T ss_pred             CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC--CccccceEEEE-CC-EEE
Confidence            7654322  1111122222333  45555555543     46899998876432  2221  11111223333 44 377


Q ss_pred             EEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC-----CcEEEEEcCCCc
Q 016457          184 VSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI-----ETLSIWDWKDGQ  248 (389)
Q Consensus       184 ~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  248 (389)
                      +.|+.+     ..+.+||+.+..  ...+.... ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETET--WTFVAPMK-HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTE--EEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEeCCCCCCccceEEEEeCCCCc--EEECCCCC-CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            777664     568999988542  11111111 11111233333  45677777654     357788877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.021  Score=48.24  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEe--CCCCeEEEe--ecCCeEEEEECcCCceeeeeeecccCC
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFG--GSTDYLLAA--GCGSQIQFWDWRNKKQVACLEESHVED  169 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~  169 (389)
                      .+++.++.||.|.-.|..+|+.+.+++.. ..++....-.  +.++.+++.  ..||.|..+|..++.....+.......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            38899999999999999999999999864 1223221110  123345554  469999999998886554443111001


Q ss_pred             eeEEEEe-----------cCCCCeEEEEeCCCcEEEEecCCCC
Q 016457          170 VTQVHFV-----------PNNQNKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       170 v~~~~~~-----------~~~~~~l~~~~~d~~i~i~d~~~~~  201 (389)
                      ..-+...           ..+ ..+++|+.+|.+.-.|++++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCC
T ss_pred             ccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCc
Confidence            1112211           023 278999999999999999874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.84  E-value=0.082  Score=41.21  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=79.1

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCc--------EEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSST--------VNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+.+.. .+.+....        ..++.|.|++  .+.++  .||.|.-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G--~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNG--YLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTS--CEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCC--CEEEe--CCCEEEEeC
Confidence            46789999999986666  6888777776542221 11111222        4789999998  45555  669887777


Q ss_pred             ccCC-e------EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce------eeeeeecccCCeeEEEEec
Q 016457          111 TRSF-H------EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ------VACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       111 ~~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~  177 (389)
                      ..+. .      -...-+..-..+..|.+.|++...++.  |+.++-....+...      ...+-...-...+-+.|.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            5321 1      011111122578899999776555554  77754433322210      1111101222345577888


Q ss_pred             CCCCeEEEEeCCCcEE
Q 016457          178 NNQNKVVSASVDGLIC  193 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~  193 (389)
                      ++. ++++.  ++.++
T Consensus       192 ~G~-l~~v~--~g~~Y  204 (236)
T 1tl2_A          192 VGT-LFGVQ--GGKFY  204 (236)
T ss_dssp             TSC-EEEEE--TTEEE
T ss_pred             CCc-EEEEe--CCeEE
Confidence            873 54444  77443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.67  E-value=0.23  Score=41.55  Aligned_cols=144  Identities=8%  Similarity=0.032  Sum_probs=73.7

Q ss_pred             cCCCCeEEEEec-----C------CeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC--------Ce
Q 016457           47 KNDWSLMAVSLS-----T------NVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD--------GT  105 (389)
Q Consensus        47 ~~~~~~l~~~~~-----d------~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d--------g~  105 (389)
                      ..++.+++.|+.     .      ..+.+||..+++-.  ..+...... .+++.. ++  .+++.|+.+        ..
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LN--SIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TT--EEEEECCEESSTTCCBCCC
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CC--EEEEEeCCcCCCCCcccce
Confidence            346778888873     1      13778888776432  222211111 122233 44  577777642        35


Q ss_pred             EEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeec-C-----CeEEEEECcCCcee--eeeeecccCCeeEEEE
Q 016457          106 IRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGC-G-----SQIQFWDWRNKKQV--ACLEESHVEDVTQVHF  175 (389)
Q Consensus       106 i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~  175 (389)
                      +.+||+.+.+-...  +......-..+. . ++..++.+|. +     ..+.+||+.+.+-.  ..+.  ....-.+++.
T Consensus       119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~  194 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATV  194 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEE
T ss_pred             EEEECCCCCcEeECCCCCCcccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC--CchhceEEEE
Confidence            88899887653321  111112222222 2 4555555655 2     47899998876432  2222  1111122232


Q ss_pred             ecCCCCeEEEEeCCC-----cEEEEecCCC
Q 016457          176 VPNNQNKVVSASVDG-----LICTFDTGGD  200 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~-----~i~i~d~~~~  200 (389)
                      . ++ .+++.|+.++     .+.+||+.+.
T Consensus       195 ~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          195 H-DG-RIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             E-TT-EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             E-CC-EEEEEeccCCCCccceEEEEECCCC
Confidence            2 44 3777777654     4888998854

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.59  E-value=0.29  Score=41.69  Aligned_cols=191  Identities=8%  Similarity=0.072  Sum_probs=106.6

Q ss_pred             cEEEEEEeCCCCCCEEEEEe-------------cCCeEEEEEccC--CeE-EEEEEc-----CCCCeEEEEEeC--CCC-
Q 016457           82 TVNQISFSGPSTPHVLHSCS-------------SDGTIRAWDTRS--FHE-VWSVTA-----GSQEIFCFSFGG--STD-  137 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~-------------~dg~i~iwd~~~--~~~-~~~~~~-----~~~~v~~~~~~~--~~~-  137 (389)
                      ..-+++..|++   .+++++             .+|.|.++|+.+  ++. ...+.+     .......+.+.+  ++. 
T Consensus        51 G~EDi~~~~~G---~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           51 GSEDLEILPNG---LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCCEEEECTTS---EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CcceeEEcCCC---eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            34566777776   455554             689999999873  222 122332     123567777755  233 


Q ss_pred             eEEEeec---CCeEEEEECcCCc----eeeeeeecccCCeeEEEEecCCCCeEEEEe-----------------CCCcEE
Q 016457          138 YLLAAGC---GSQIQFWDWRNKK----QVACLEESHVEDVTQVHFVPNNQNKVVSAS-----------------VDGLIC  193 (389)
Q Consensus       138 ~l~~~~~---d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~  193 (389)
                      +|+++..   +..|.+|++....    .+.++....-...+.+++.++|. ++++..                 ..|.|+
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEE
Confidence            4666543   4678888776532    22333311224578999999985 666543                 124455


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEE-EecCCcEEEEEcCC-Cce--eEEeecccccccCCccCCCC
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWC-LTHIETLSIWDWKD-GQN--VASFENARSLASDSWTLDDV  269 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~  269 (389)
                      .+|..       .+......-...+.++|+ ++++.|+. -+..+.|..|++.. ++.  ...+.             ..
T Consensus       207 r~d~~-------~~~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-------------~~  265 (355)
T 3sre_A          207 YYSPN-------DVRVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-------------FD  265 (355)
T ss_dssp             EECTT-------CCEEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-------------CS
T ss_pred             EEECC-------eEEEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-------------CC
Confidence            55542       122233333456899999 56655554 45678999999863 322  12221             12


Q ss_pred             CceeeecccC-CCCeEEEEEecCC-ceEEEEE
Q 016457          270 DYFVDCHYPG-EGENLWVIGGTGA-GTVGYFP  299 (389)
Q Consensus       270 ~~i~~~~~~~-~~~~~~l~~g~~d-g~i~i~~  299 (389)
                      ...-.+++.+ +|+  +.+++..+ +.|..|+
T Consensus       266 g~PDGi~vD~e~G~--lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          266 TLVDNISVDPVTGD--LWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             SEEEEEEECTTTCC--EEEEEESCHHHHHSCC
T ss_pred             CCCceEEEeCCCCc--EEEEecCCceEEEEEC
Confidence            4566778888 476  44433323 3444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.57  E-value=0.37  Score=48.46  Aligned_cols=228  Identities=10%  Similarity=0.099  Sum_probs=125.2

Q ss_pred             CCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe
Q 016457           59 TNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY  138 (389)
Q Consensus        59 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  138 (389)
                      ..+|.|.|+.++..+..-.   -.--+...+|..  +.++.- ...++.|+|+.+.+.+..+... .+|.--.|- +...
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~--~iiALr-ag~~lQiFnl~~k~klks~~~~-e~VvfWkWi-s~~~  118 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPAS--KVIALK-AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI-SLNT  118 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCc--ceEEEe-cCCeEEEeehHHhhhhcccccC-CCceEEEec-CCCe
Confidence            3478888988765442211   111233457766  455554 3678999999998888887764 567777886 3444


Q ss_pred             EEEeecCCeEEEEECcC-Cceeeeeeecc----cCCeeEEEEecCCCCeEEEEe------CCCcEEEEecCCCCCCCccc
Q 016457          139 LLAAGCGSQIQFWDWRN-KKQVACLEESH----VEDVTQVHFVPNNQNKVVSAS------VDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       139 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~  207 (389)
                      +...+ +..|.-|++.. ..++..+. .|    ...|..-..+++.+..+++|-      -.|.+.+|....+.     .
T Consensus       119 l~lVT-~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-----s  191 (1630)
T 1xi4_A          119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----S  191 (1630)
T ss_pred             eEEEc-CCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-----c
Confidence            44333 47999999964 34444443 33    355777778888863343432      35788899887432     2


Q ss_pred             eeeeccCCceeeEEEe--cCCCcEEEEEec---CCcEEEEEcCCC-ceeEEeecccccccCCccCC-CCCceeeecccCC
Q 016457          208 ESVINVGTSVGKVGFF--GETNKHLWCLTH---IETLSIWDWKDG-QNVASFENARSLASDSWTLD-DVDYFVDCHYPGE  280 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~--~~~~~~l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~  280 (389)
                      ..+.+|-..-..+...  +....+++.+..   .+.++|-++... ..-..|..  ......++.+ ..+....+..++.
T Consensus       192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k--k~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK--KAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc--ccccccCCcccccCcceEEEeccc
Confidence            2223333222222221  011112222211   257888887432 00001100  0000000000 1244556677776


Q ss_pred             CCeEEEEEecCCceEEEEEeccCCc
Q 016457          281 GENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       281 ~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      -.  ++..-+.-|.|++||+.++..
T Consensus       270 ~g--~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          270 HD--VVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             cC--EEEEEecCceEEEEecccchh
Confidence            66  555666789999999999875

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.48  E-value=0.46  Score=42.68  Aligned_cols=242  Identities=9%  Similarity=-0.004  Sum_probs=132.2

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCC-------------------------CcE--EEEEEeC---CCCCCEEEEEe
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHS-------------------------STV--NQISFSG---PSTPHVLHSCS  101 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-------------------------~~v--~~i~~~~---~~~~~~l~s~~  101 (389)
                      .|.+|+..|.|+|+-+.+++.++.+...+                         +..  ..+.+..   +|  ++|+.-.
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDG--rylfiNd  149 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDG--KYLFIND  149 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEE--EEEEEEE
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeee--EEEEEec
Confidence            57888999999999999888776542100                         001  1222221   23  4566555


Q ss_pred             -cCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEe--CCCCeEEEeec-------CCeE---------E---EEECcCCce
Q 016457          102 -SDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFG--GSTDYLLAAGC-------GSQI---------Q---FWDWRNKKQ  158 (389)
Q Consensus       102 -~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~-------d~~i---------~---iwd~~~~~~  158 (389)
                       .+..|...+++..++-..+... ...+.++.|-  |+..++++.+.       ||..         .   ..|..+.+.
T Consensus       150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v  229 (638)
T 3sbq_A          150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM  229 (638)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred             CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence             4567888888888887777654 5678888886  67888888875       3331         1   122222332


Q ss_pred             eeeeeecccCCeeEEEEecCCCCeEEEEeCCC---------------cEEEEecC-------------------------
Q 016457          159 VACLEESHVEDVTQVHFVPNNQNKVVSASVDG---------------LICTFDTG-------------------------  198 (389)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---------------~i~i~d~~-------------------------  198 (389)
                      ..++.  -..........+++. +.++.+.+.               .+.++++.                         
T Consensus       230 ~~Qv~--v~gnld~~~~~~~g~-~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~  306 (638)
T 3sbq_A          230 AFQVI--VDGNLDNTDADYTGR-FAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGR  306 (638)
T ss_dssp             EEEEE--ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             EEEEE--cCCChhhcCCCCCCC-EEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccc
Confidence            22222  112233344556665 555444321               24444442                         


Q ss_pred             CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCCceeE--EeecccccccCCccCCCCCceeee
Q 016457          199 GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDGQNVA--SFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      ........+..+.........+..+ |+|+++++++. +.++.++|++......  .+...+......  .+-.......
T Consensus       307 ~~~~~~~~~~~~iP~pksPHGv~vs-PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~GlGPlHt  383 (638)
T 3sbq_A          307 KKDGKDSKFTRYVPVPKNPHGCNTS-SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PELGLGPLHT  383 (638)
T ss_dssp             CBTTBCCSSEEEEEESSSCCCEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBCCSCEEEE
T ss_pred             cccccCCceEEEEeCCCCCcceeeC-CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccCCCcccEE
Confidence            1000001222233334455677888 67777766654 6799999987321100  000000000000  0012456778


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +|.++|.  ...+-.-|..|..|++...
T Consensus       384 ~Fd~~G~--aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          384 TFDGRGN--AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EECSSSE--EEEEETTTTEEEEEEHHHH
T ss_pred             EECCCCc--eEeeeeecceEEEEeccHH
Confidence            9999885  4567778999999999764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.17  E-value=0.47  Score=39.67  Aligned_cols=146  Identities=8%  Similarity=-0.008  Sum_probs=71.8

Q ss_pred             cCCCCeEEEEec----CC-------eEEEEeCCCceee--eeecCCCCcEEEEEEeCCCCCCEEEEEecC-------CeE
Q 016457           47 KNDWSLMAVSLS----TN-------VVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSD-------GTI  106 (389)
Q Consensus        47 ~~~~~~l~~~~~----d~-------~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-------g~i  106 (389)
                      ..++.+++.|+.    ++       .+.+||..+++-.  ..+...... .+++.. ++  .+++.|+.+       ..+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DD--KIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TT--EEEEEEEEBTTTCCEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CC--EEEEEcCccCCCCcccceE
Confidence            456778888873    11       2778888765432  222211111 222333 44  577777754       247


Q ss_pred             EEEEccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccCCeeEEEEecC
Q 016457          107 RAWDTRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPN  178 (389)
Q Consensus       107 ~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  178 (389)
                      .+||+.+.+-...-...  ...- +++.. ++..++.+|.      -..+.+||+.+.+-...-.......-.+++.. +
T Consensus       130 ~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~  206 (318)
T 2woz_A          130 LCYDPVAAKWSEVKNLPIKVYGH-NVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-K  206 (318)
T ss_dssp             EEEETTTTEEEEECCCSSCEESC-EEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T
T ss_pred             EEEeCCCCCEeECCCCCCccccc-EEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-C
Confidence            78888776543221111  1111 22222 4555555554      24689999887643221110111111223333 3


Q ss_pred             CCCeEEEEeCC-----CcEEEEecCCC
Q 016457          179 NQNKVVSASVD-----GLICTFDTGGD  200 (389)
Q Consensus       179 ~~~~l~~~~~d-----~~i~i~d~~~~  200 (389)
                      + .+++.|+.+     ..+.+||+.+.
T Consensus       207 ~-~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          207 G-KIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             T-EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             C-EEEEEcCcCCCCccceEEEEECCCC
Confidence            4 377777653     34778898754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.63  E-value=0.89  Score=38.65  Aligned_cols=142  Identities=11%  Similarity=-0.102  Sum_probs=64.7

Q ss_pred             CeEEEEEccCCeEEEEEEcCC-CCe-EEEEEeCCCCeEEEeec------CCeEEEEEC--cCCce--eeeeeecccCC-e
Q 016457          104 GTIRAWDTRSFHEVWSVTAGS-QEI-FCFSFGGSTDYLLAAGC------GSQIQFWDW--RNKKQ--VACLEESHVED-V  170 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~~~~~------d~~i~iwd~--~~~~~--~~~~~~~~~~~-v  170 (389)
                      ..+.+||+.+.+-...-.... ..- .+++.. ++..++.+|.      ...+..||+  .+.+-  +..+. ..... -
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~-~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS-SPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS-TTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC-CCccccc
Confidence            578899998765443322221 111 233333 4555555553      246777877  43322  21221 11111 1


Q ss_pred             eEEEEecCCCCeEEEEeCC----------------------CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          171 TQVHFVPNNQNKVVSASVD----------------------GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      .+++.. ++. +++.|+.+                      ..+.+||+.+..  ...+..+...... ..+..  .++.
T Consensus       246 ~~~~~~-~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~-~~~~~--~~~~  318 (357)
T 2uvk_A          246 GFAGIS-NDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAY-GVSLP--WNNS  318 (357)
T ss_dssp             CEEEEE-TTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBS-SEEEE--ETTE
T ss_pred             ceEEEE-CCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCccc-ceeEE--eCCE
Confidence            122322 343 77777632                      247789988542  2222221111111 12222  3567


Q ss_pred             EEEEEecCC------cEEEEEcCCCceeEEee
Q 016457          229 HLWCLTHIE------TLSIWDWKDGQNVASFE  254 (389)
Q Consensus       229 ~l~~~~~d~------~i~i~d~~~~~~~~~~~  254 (389)
                      +++.|+.++      .+.++++++++.+....
T Consensus       319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            778887653      46666888776665443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.62  E-value=0.83  Score=38.13  Aligned_cols=139  Identities=13%  Similarity=0.037  Sum_probs=67.5

Q ss_pred             EEEEEecCCeEEEEEccCCeEEEE-EEcCC-CCeEEEEEeCCCCeEEEeec----CC-------eEEEEECcCCceee--
Q 016457           96 VLHSCSSDGTIRAWDTRSFHEVWS-VTAGS-QEIFCFSFGGSTDYLLAAGC----GS-------QIQFWDWRNKKQVA--  160 (389)
Q Consensus        96 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~--  160 (389)
                      +++.|+.  .+..||..+.+-... +.... ..-.+++. .++..++.+|.    ++       .+..||..+.+-..  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVT-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEEC-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEE-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            4444443  378999988775441 21111 12223333 25556666662    11       27788887664322  


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCC-------CcEEEEecCCCCCCCccceeeeccCCce--eeEEEecCCCcEEE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVD-------GLICTFDTGGDINDDDLLESVINVGTSV--GKVGFFGETNKHLW  231 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l~  231 (389)
                      .+.  ....-.+++.. ++ .+++.|+.+       ..+.+||..+..  ...+   .....+.  .+++.  .++.+++
T Consensus        95 ~~p--~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~---~~~p~~r~~~~~~~--~~~~iyv  163 (318)
T 2woz_A           95 PLP--SARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEV---KNLPIKVYGHNVIS--HNGMIYC  163 (318)
T ss_dssp             CBS--SCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEE---CCCSSCEESCEEEE--ETTEEEE
T ss_pred             CCC--ccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCC--EeEC---CCCCCcccccEEEE--ECCEEEE
Confidence            222  11111223332 34 377777754       347888887532  1111   1111111  12222  3456666


Q ss_pred             EEecC------CcEEEEEcCCCc
Q 016457          232 CLTHI------ETLSIWDWKDGQ  248 (389)
Q Consensus       232 ~~~~d------~~i~i~d~~~~~  248 (389)
                      .|+.+      ..+.+||+.+.+
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTE
T ss_pred             EcCCCCCCCccceEEEEcCCCCE
Confidence            66542      368899988764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.53  E-value=1.2  Score=39.43  Aligned_cols=106  Identities=9%  Similarity=0.056  Sum_probs=61.6

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee--eeeecC------CCCcEEEEEEeCC---CCCCEEEEEec----
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY--SGECKG------HSSTVNQISFSGP---STPHVLHSCSS----  102 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~------~~~~v~~i~~~~~---~~~~~l~s~~~----  102 (389)
                      -.....|+|.|+|+++++-...+.|++++..+++.  +..+..      .......|+|+|+   +. .+.++-+.    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g-~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP-YIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC-EEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCC-EEEEEEeccccC
Confidence            34567999999998666654345799888655543  222221      2456789999995   31 34444332    


Q ss_pred             --------CCeEEEEEccCC-------eEEE-EEEc-CCCCeEEEEEeCCCCeEEEeec
Q 016457          103 --------DGTIRAWDTRSF-------HEVW-SVTA-GSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus       103 --------dg~i~iwd~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                              ...|.-++....       +.+. .+.. .......|+|.|++..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    234555554321       1121 1221 1345789999998877776554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.47  E-value=1  Score=38.18  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE--E----EcCCCCeEEEEEeCC---CCeEEEee---cCCe
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS--V----TAGSQEIFCFSFGGS---TDYLLAAG---CGSQ  147 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~~---~d~~  147 (389)
                      -.....|+|.|++  .++++--..|.|++++..+++....  +    .........|+++|+   ++.|+++.   .++.
T Consensus        31 L~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3456899999999  5666554489999998765554221  1    122567899999985   56666642   3456


Q ss_pred             EEEEECcCC----------cee-eeeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          148 IQFWDWRNK----------KQV-ACLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       148 i~iwd~~~~----------~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      |.-|.+..+          +.+ ..+.......-..|+|.|+|. ++++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence            666655431          111 112211122346799999995 666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.28  E-value=1.7  Score=40.95  Aligned_cols=198  Identities=8%  Similarity=-0.020  Sum_probs=101.1

Q ss_pred             CCCCeEEEEecC----CeEEEEeCCCceeeeee-c------CCCCcEEEEEEeC-CCCCCEEEEEecCC------eEEEE
Q 016457           48 NDWSLMAVSLST----NVVKLYSPVTGQYSGEC-K------GHSSTVNQISFSG-PSTPHVLHSCSSDG------TIRAW  109 (389)
Q Consensus        48 ~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~-~------~~~~~v~~i~~~~-~~~~~~l~s~~~dg------~i~iw  109 (389)
                      .++.+++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ ++  .+++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~--~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN--QLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT--EEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC--EEEEEcCCCCCCCccccEEEE
Confidence            456677777753    46888998776432211 1      1111123344443 55  5777777543      47788


Q ss_pred             EccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeecCC--eEEEEECcCCceeee-----eeecccCCeeEEEEecCCC
Q 016457          110 DTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGCGS--QIQFWDWRNKKQVAC-----LEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       110 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~  180 (389)
                      |+.+.+-...  +......-.++.+. ++..++.||.++  .+.+||..+.+-...     +. .......++.+.....
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFF-QNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGG-GSCCBSCEEEEETTTT
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCC-CcccceeEEEEeCCCC
Confidence            8887643322  11111222223322 566666666643  799999887643221     11 1122233456665522


Q ss_pred             CeEEEEeC--C-----CcEEEEecCCCCC--C--CccceeeeccCCceeeEEEecCCCcEEEEEec--------CCcEEE
Q 016457          181 NKVVSASV--D-----GLICTFDTGGDIN--D--DDLLESVINVGTSVGKVGFFGETNKHLWCLTH--------IETLSI  241 (389)
Q Consensus       181 ~~l~~~~~--d-----~~i~i~d~~~~~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--------d~~i~i  241 (389)
                      .+++.|+.  +     ..+.+||+.+..-  .  ...+.........-.+++.. .++.+++.|+.        ...+.+
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEE
Confidence            37777765  2     4588999985431  0  01111100111111233333 33667777774        346889


Q ss_pred             EEcCCCcee
Q 016457          242 WDWKDGQNV  250 (389)
Q Consensus       242 ~d~~~~~~~  250 (389)
                      ||+.+.+-.
T Consensus       631 yd~~t~~W~  639 (695)
T 2zwa_A          631 LDPLSETLT  639 (695)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCeEE
Confidence            998876543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.87  E-value=1.6  Score=37.15  Aligned_cols=147  Identities=10%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-------cCCCCeEEEEEeCC---CCeEEEeecC------
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-------AGSQEIFCFSFGGS---TDYLLAAGCG------  145 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~d------  145 (389)
                      ....|+|.|++  ..|+.+...|.|++++.. +.....+.       ........++++|+   ++.++++...      
T Consensus        19 ~P~~i~~~pdG--~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDN--HGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTT--CCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCC--CEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            45789999998  525566678999999853 33211111       12356789999986   6777766431      


Q ss_pred             --CeEEEEECcCC--c--eeeee----ee--cccCCeeEEEEecCCCCeEEEEeC-------------CCcEEEEecCCC
Q 016457          146 --SQIQFWDWRNK--K--QVACL----EE--SHVEDVTQVHFVPNNQNKVVSASV-------------DGLICTFDTGGD  200 (389)
Q Consensus       146 --~~i~iwd~~~~--~--~~~~~----~~--~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~  200 (389)
                        ..|..|++...  .  ....+    ..  ........|+|.|+|. ++++.+.             .|.|.-++....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              25666665432  1  11111    10  0111245799999994 6555443             246777776632


Q ss_pred             CCCCc--------cceeeeccCCceeeEEEecCCCcEEEE
Q 016457          201 INDDD--------LLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       201 ~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      .....        ....+..--.....++|.+..+.++++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence            11111        111111112346789998535654443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.65  E-value=2.4  Score=38.21  Aligned_cols=194  Identities=7%  Similarity=0.066  Sum_probs=109.7

Q ss_pred             CCCeEEEEec-CCeEEEEeCCCceeeeeec-CCCCcEEEEEEe--CCCCCCEEEEEec-------CCeE---------EE
Q 016457           49 DWSLMAVSLS-TNVVKLYSPVTGQYSGECK-GHSSTVNQISFS--GPSTPHVLHSCSS-------DGTI---------RA  108 (389)
Q Consensus        49 ~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~~~l~s~~~-------dg~i---------~i  108 (389)
                      ||++|++-.. +..|-..+++..++-+.+. .....+..++|.  |+.  .+++.++.       ||..         .+
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T--~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT--KYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC--CEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc--cEEEecceeeccCCCCCcccccCChhhceE
Confidence            6778887764 5677777777766544433 245678888886  455  57777664       2221         11


Q ss_pred             ---EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC---------------CeEEEEECcC-------Cc------
Q 016457          109 ---WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG---------------SQIQFWDWRN-------KK------  157 (389)
Q Consensus       109 ---wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~-------~~------  157 (389)
                         .|..+.+....+.. ......+...+++++.++.+.+               ..+.+++++.       ++      
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence               12223333333222 1233344556667777766542               1355555421       00      


Q ss_pred             -eeeeeee--------------cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCC--------CCCccceeeeccC
Q 016457          158 -QVACLEE--------------SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDI--------NDDDLLESVINVG  214 (389)
Q Consensus       158 -~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~~  214 (389)
                       -+..+..              .-......+..+|+|+..+++|-.+.++.++|++.-.        .....+.......
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence             0111110              1234456688999998556666678999999998321        0111112222234


Q ss_pred             CceeeEEEecCCCcEEEEEecCCcEEEEEcCC
Q 016457          215 TSVGKVGFFGETNKHLWCLTHIETLSIWDWKD  246 (389)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  246 (389)
                      -.....+|. ++|....+.--|..|.-|++..
T Consensus       378 lGPlHt~Fd-~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          378 LGPLHTTFD-GRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SCEEEEEEC-SSSEEEEEETTTTEEEEEEHHH
T ss_pred             CcccEEEEC-CCCceEeeeeecceEEEEeccH
Confidence            566788998 5676666667899999999864

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.26  E-value=1.9  Score=35.34  Aligned_cols=223  Identities=11%  Similarity=-0.037  Sum_probs=115.5

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      ..|..++..... .++. . ||.|..|-....-.+..-......|..|+.....   .++. . ||.|..|-....-.+.
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCCCCC
Confidence            356666655432 2333 4 8889988654321111111123367777765433   4444 4 8999999755321111


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .-..-...|..++..  ....++-. +|.|+.|-....-.+..-. .....|..++....   ..+.-. ||.|+.|-..
T Consensus        96 ~P~~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~-~~~~~i~~i~~G~~---~~~~l~-~G~v~~wG~n  167 (282)
T 3qhy_B           96 VPAEARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGVY---TALAVK-NGGVIAWGDN  167 (282)
T ss_dssp             CCGGGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSS---EEEEEE-TTEEEEEECC
T ss_pred             CCcccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCc-cCCCCeEEEEcccC---EEEEEE-CCEEEEecCC
Confidence            000013468888876  33444445 8999999765432222111 23355777766554   223334 7999999876


Q ss_pred             CCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeeccc
Q 016457          199 GDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYP  278 (389)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (389)
                      .......+    ......|..++.- . ...++.  .||.|+.|-......+-. .. .          ....|..++..
T Consensus       168 ~~gqlg~p----~~~~~~v~~i~~G-~-~hs~al--~~G~v~~wG~n~~gqlg~-p~-~----------~~~~v~~i~~G  227 (282)
T 3qhy_B          168 YFGQTTVP----AEAQSGVDDVAGG-I-FHSLAL--KDGKVIAWGDNRYKQTTV-PT-E----------ALSGVSAIASG  227 (282)
T ss_dssp             TTSTTSCC----GGGGSSEEEEEEC-S-SEEEEE--ETTEEEEEECCTTSTTCC-CG-G----------GGSSCCEEEEC
T ss_pred             CCCCCCCc----eecCCCeEEEEec-C-CEEEEE--ECCeEEEEECCCCCCCCC-Cc-c----------cCCCceEEEcC
Confidence            43211111    1123467777664 2 233444  599999998654322210 00 0          11345555544


Q ss_pred             CCCCeEEEEEecCCceEEEEEecc
Q 016457          279 GEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ...   .++. . ||.|+.|-...
T Consensus       228 ~~h---~~al-~-~g~v~~wG~n~  246 (282)
T 3qhy_B          228 EWY---SLAL-K-NGKVIAWGSSR  246 (282)
T ss_dssp             SSC---EEEE-E-TTEEEEESTTC
T ss_pred             CCE---EEEE-E-CCEEEEecCCC
Confidence            432   2222 3 89999996554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.60  E-value=2.7  Score=34.82  Aligned_cols=142  Identities=6%  Similarity=-0.011  Sum_probs=72.4

Q ss_pred             EEeCCCCeEEEeecC--------------CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe----CCCcE
Q 016457          131 SFGGSTDYLLAAGCG--------------SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS----VDGLI  192 (389)
Q Consensus       131 ~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i  192 (389)
                      -+++.++.|+-+...              ..|+..++...+. ..+.   ...  +..|++++. .|+-..    ....|
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~---~~~--~~~~s~~g~-~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLD---PDP--CIYASLIGN-YIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEE---CSC--EEEEEEETT-EEEEEEESSSSCEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEee---cCC--ccEEEEeCC-EEEEEeecCCCCceE
Confidence            446678888777652              3577777765542 2332   111  236777775 666554    34456


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCce
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (389)
                      +..++.+.     ....+..+..    .++++..+.+.++......|..-++..+.....+.+               ..
T Consensus       132 y~~~~dGs-----~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---------------~~  187 (302)
T 3s25_A          132 YRIRIDGE-----EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---------------NC  187 (302)
T ss_dssp             EEEETTSC-----CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---------------CE
T ss_pred             EEEECCCC-----CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---------------Cc
Confidence            66666532     1233333322    233423334444444467888888876554433322               11


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      . ..++|+++.++.........|..-++....
T Consensus       188 ~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          188 Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            1 235588884433222222456666666544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.47  E-value=5.1  Score=37.70  Aligned_cols=149  Identities=10%  Similarity=0.077  Sum_probs=76.9

Q ss_pred             CEEEEEecC----CeEEEEEccCCeEEEEE-E-----cC--CCCeEEEEEeCCCCeEEEeecC------CeEEEEECcCC
Q 016457           95 HVLHSCSSD----GTIRAWDTRSFHEVWSV-T-----AG--SQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRNK  156 (389)
Q Consensus        95 ~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~--~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~  156 (389)
                      .+++.|+.+    ..+.+||+.+.+-...- .     ..  ...-..+.+..++..++.||.+      ..+.+||..+.
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            577777753    35788898877544322 1     11  1122233331134455555542      36889998875


Q ss_pred             ce--eeeeeecccCCeeEEEEecCCCCeEEEEeCCC--cEEEEecCCCCCCCcccee---eeccCCceeeEEEecCCCcE
Q 016457          157 KQ--VACLEESHVEDVTQVHFVPNNQNKVVSASVDG--LICTFDTGGDINDDDLLES---VINVGTSVGKVGFFGETNKH  229 (389)
Q Consensus       157 ~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~  229 (389)
                      +-  +..+.  ....-.+++...++. +++.|+.++  .+.+||..+..  ...+..   ..........+.+....+.+
T Consensus       479 ~W~~~~~~p--~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          479 EWSMIKSLS--HTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             EEEECCCCS--BCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             cEEECCCCC--CCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            42  22222  111122333323554 888887654  68999998542  111111   11111122234555233667


Q ss_pred             EEEEecC-------CcEEEEEcCCCc
Q 016457          230 LWCLTHI-------ETLSIWDWKDGQ  248 (389)
Q Consensus       230 l~~~~~d-------~~i~i~d~~~~~  248 (389)
                      ++.|+.+       +.+.+||+.+..
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCc
Confidence            7777652       468899988776

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.02  E-value=5.5  Score=34.32  Aligned_cols=190  Identities=11%  Similarity=-0.000  Sum_probs=91.7

Q ss_pred             CcceEEEeecC-CCCeEEEEecCC----eEEEEeCCCceeeeeec------C--------CCCcEEEEEEeCCC-CCCEE
Q 016457           38 DDYVFEIVPKN-DWSLMAVSLSTN----VVKLYSPVTGQYSGECK------G--------HSSTVNQISFSGPS-TPHVL   97 (389)
Q Consensus        38 ~~~v~~~~~~~-~~~~l~~~~~d~----~i~iw~~~~~~~~~~~~------~--------~~~~v~~i~~~~~~-~~~~l   97 (389)
                      ...|.+|++.| +...|.+++..|    .|...+ +.|+.-..+.      .        ....|.++++.|.. . ..|
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEP-GTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTST-TCE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCC-CEE
Confidence            56799999998 334455555555    444432 3333222111      1        11357889998632 2 356


Q ss_pred             EEEecCCeEEEEEccCCeEEEEEE-------------------cCCCCeEEEEEeCC-CCeEEEeecCCeEEEEECcCCc
Q 016457           98 HSCSSDGTIRAWDTRSFHEVWSVT-------------------AGSQEIFCFSFGGS-TDYLLAAGCGSQIQFWDWRNKK  157 (389)
Q Consensus        98 ~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~  157 (389)
                      ..+...+.|...+- .++.-..+.                   .....+.+|.++|. .+.++++..++.|...+ ..++
T Consensus       132 ~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~  209 (394)
T 3b7f_A          132 YAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT  209 (394)
T ss_dssp             EEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred             EEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence            66666665544331 222111111                   01235788999874 45677766555554432 2222


Q ss_pred             eeeeeee---c-c--------cCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEe
Q 016457          158 QVACLEE---S-H--------VEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFF  223 (389)
Q Consensus       158 ~~~~~~~---~-~--------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~  223 (389)
                      .-..+..   . +        ...+.+|.++|..+..++.+...+ |...+-...  ....+..-...  ...+..+++.
T Consensus       210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~--tW~~~~~~l~~~~~~~~~~i~~~  286 (394)
T 3b7f_A          210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREG--VWKRIGDAMPREVGDIGFPIVVH  286 (394)
T ss_dssp             SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTT--EEECGGGGSCTTTCSCEEEEEEC
T ss_pred             CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCC--cceECCCCCCCCCccceEEEEEC
Confidence            2222110   0 0        134889999997544777776544 544433211  11111110001  0234567776


Q ss_pred             cCCCcEEEEEe
Q 016457          224 GETNKHLWCLT  234 (389)
Q Consensus       224 ~~~~~~l~~~~  234 (389)
                      |.+...++++.
T Consensus       287 p~~~~~l~~~t  297 (394)
T 3b7f_A          287 QRDPRTVWVFP  297 (394)
T ss_dssp             SSCTTCEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            54555565554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.25  E-value=5.3  Score=32.64  Aligned_cols=185  Identities=11%  Similarity=-0.014  Sum_probs=97.4

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  160 (389)
                      ..|..|+.....   .++. . ||.|..|-....-.+..-......|..++.. ....++. . ||.|..|-....-.+.
T Consensus        24 ~~i~~ia~G~~h---~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G-~~hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYFH---GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSSE---EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC-SSEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCCe---EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC-CCEEEEE-E-CCEEEEeeCCCCCCCC
Confidence            357777765432   4444 4 8999999755322111000113467777775 2333333 4 8999999765432221


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      .-. .-...|..++....   ..+.-. +|.|+.|-.........+    ......|..++.- ..  +.+.-. ||.|.
T Consensus        96 ~P~-~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~----~~~~~~i~~i~~G-~~--~~~~l~-~G~v~  162 (282)
T 3qhy_B           96 VPA-EARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVP----AEAQSGVTALDGG-VY--TALAVK-NGGVI  162 (282)
T ss_dssp             CCG-GGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEEC-SS--EEEEEE-TTEEE
T ss_pred             CCc-ccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCC----ccCCCCeEEEEcc-cC--EEEEEE-CCEEE
Confidence            111 12346777877664   344445 999999987643211111    1123456677654 22  333334 79999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .|-......+.. +. .          -...|..++.....   .++.  .||.|+.|-....
T Consensus       163 ~wG~n~~gqlg~-p~-~----------~~~~v~~i~~G~~h---s~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          163 AWGDNYFGQTTV-PA-E----------AQSGVDDVAGGIFH---SLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             EEECCTTSTTSC-CG-G----------GGSSEEEEEECSSE---EEEE--ETTEEEEEECCTT
T ss_pred             EecCCCCCCCCC-ce-e----------cCCCeEEEEecCCE---EEEE--ECCeEEEEECCCC
Confidence            997654322210 00 0          11446666554432   2333  5899999976543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=89.57  E-value=7.4  Score=31.65  Aligned_cols=198  Identities=10%  Similarity=0.011  Sum_probs=114.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEe---CCCceeeeeecCCCCcEEEEEEeC--CCCCCEEEEEecCCeEEEEEcc
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYS---PVTGQYSGECKGHSSTVNQISFSG--PSTPHVLHSCSSDGTIRAWDTR  112 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~---~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~l~s~~~dg~i~iwd~~  112 (389)
                      .+.+..+........|+.-+..|.++--.   +..+.....+. ..+.|..+.- +  +.  .+++..+.+|.++-..+.
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~--~~~v~~T~~G~iKr~~l~   98 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFG--NRLLLATKKGYVKKIPLA   98 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSC--SEEEEEETTSEEEEEEGG
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCC--CEEEEEeCCCEEEEEEHH
Confidence            45566665555555676677788766543   33221111133 3556666644 3  23  689999999999998876


Q ss_pred             CC------eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC---------ceeeeeeecccCCeeEEEEec
Q 016457          113 SF------HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK---------KQVACLEESHVEDVTQVHFVP  177 (389)
Q Consensus       113 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~  177 (389)
                      ..      .....++. .+.+..+........++..+..|.+..+....-         .....+.  ....|..+...+
T Consensus        99 ~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d~vv~~~~~~  175 (276)
T 3no0_A           99 EFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KNDETSGLRIWN  175 (276)
T ss_dssp             GTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEES
T ss_pred             HhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCCEEEEEEEeC
Confidence            43      22222333 355666655546678888888999888875421         1222333  345666666555


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCCCCC---CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE--EEcC
Q 016457          178 NNQNKVVSASVDGLICTFDTGGDIND---DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI--WDWK  245 (389)
Q Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i--~d~~  245 (389)
                      ++. .++..+..|.++...+..-...   ..-+..+ ...+.+..+... .+.+.++..+.+|.+..  ++..
T Consensus       176 ~~~-~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~-~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          176 GEP-YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI-KEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             SCS-EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE-SSEEEEEEEETTSCEEEEEEEGG
T ss_pred             CCC-EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe-CCCCEEEEEcCCCeEEEeeeCHH
Confidence            554 8888999999998887521110   0111111 223444444443 33445666677777666  6654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.54  E-value=13  Score=36.48  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEc
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTA  122 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  122 (389)
                      .+.+++..++.  .++++-+.|+++|+|++.+++++.+...
T Consensus       237 ~~~~~~~~~~~--~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTY--NVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTT--TEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCC--cEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            46777777776  6999999999999999999999887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.64  E-value=12  Score=32.97  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=61.4

Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE--EEEc------CCCCeEEEEEeCC---CCeEEEeecC----
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW--SVTA------GSQEIFCFSFGGS---TDYLLAAGCG----  145 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~l~~~~~d----  145 (389)
                      .....|+|.|++  .++++-...+.|.+++..+++...  .+..      .......|+|+|+   ++.|+++...    
T Consensus        27 ~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            356799999999  555554333478888765554322  2211      2456779999986   7777766531    


Q ss_pred             ---------CeEEEEECcCC-------ceee-eeeecccCCeeEEEEecCCCCeEEEEe
Q 016457          146 ---------SQIQFWDWRNK-------KQVA-CLEESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       146 ---------~~i~iwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                               ..|.-++....       +.+. .+..........|+|.|+|. ++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                     34555554322       1121 12211123468899999995 666654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.62  E-value=11  Score=31.43  Aligned_cols=156  Identities=9%  Similarity=0.082  Sum_probs=94.0

Q ss_pred             CcceEEEeecC---CCCeEEEEecCCeEEEEeCCCc-------eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           38 DDYVFEIVPKN---DWSLMAVSLSTNVVKLYSPVTG-------QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        38 ~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      .+.|.++..-+   +..+++..+.+|.|+.-.+...       .....+.. .+.+..+......  +.|+..+..|.+.
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~  170 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSI  170 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEE
Confidence            44565554333   4678999999999999876542       22223443 3445555555444  5788888899887


Q ss_pred             EEEcc--C---------CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce-------eeeeee-cccC
Q 016457          108 AWDTR--S---------FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ-------VACLEE-SHVE  168 (389)
Q Consensus       108 iwd~~--~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~  168 (389)
                      .+.+.  .         |.....+.. ...|.++...+.+..++..+..|.++.-.+.....       +..+.. ....
T Consensus       171 rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d  249 (327)
T 3uc1_A          171 RFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRG  249 (327)
T ss_dssp             EEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTC
T ss_pred             EEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCC
Confidence            77765  2         122122222 45677776665677899999999999887653221       222221 1133


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecC
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTG  198 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  198 (389)
                      .+..+...... ..++..+.+|.+..++..
T Consensus       250 ~lv~~~~~~~~-~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          250 RLVGALIVDDD-SELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             SEEEEEEECTT-CEEEEEEGGGCEEEEEGG
T ss_pred             eEEEEEEeCCC-ccEEEEcCCCeEEEEehh
Confidence            45444444434 367777888888888765

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.05  E-value=14  Score=31.75  Aligned_cols=143  Identities=12%  Similarity=0.027  Sum_probs=71.2

Q ss_pred             ceEEEeecCC--CCeEEEEecCCeEEEEeCCCceeeeeec-------------------CCCCcEEEEEEeCCCCCCEEE
Q 016457           40 YVFEIVPKND--WSLMAVSLSTNVVKLYSPVTGQYSGECK-------------------GHSSTVNQISFSGPSTPHVLH   98 (389)
Q Consensus        40 ~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~~~v~~i~~~~~~~~~~l~   98 (389)
                      .|.++++.|.  ...|.+++..+.|...+ +.|+.-..+.                   .....+.+|.+.|... ..|+
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~-~~l~  193 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDP-KHLY  193 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCT-TCEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCC-CEEE
Confidence            5778888872  45666666666665553 2232222211                   1224688999987432 3455


Q ss_pred             EEecCCeEEEEEccCCeEEEEEEcC-------------CCCeEEEEEeCCC-CeEEEeecCCeEEEEECcCCceeeeeee
Q 016457           99 SCSSDGTIRAWDTRSFHEVWSVTAG-------------SQEIFCFSFGGST-DYLLAAGCGSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        99 s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  164 (389)
                      .+..++.|...+ ..++.-..+...             ...+.++.++|.+ +.++++.. +.|...+ ..++.-..+..
T Consensus       194 vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~-D~G~tW~~~~~  270 (394)
T 3b7f_A          194 IGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMD-RREGVWKRIGD  270 (394)
T ss_dssp             EEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEE-TTTTEEECGGG
T ss_pred             EEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeC-CCCCcceECCC
Confidence            555444443332 222221111110             1248899998764 56666654 4454443 12332222221


Q ss_pred             cc-c---CCeeEEEEecCCCCeEEEEe
Q 016457          165 SH-V---EDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       165 ~~-~---~~v~~~~~~~~~~~~l~~~~  187 (389)
                      .. .   ..+.+++++|..+..+.++.
T Consensus       271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          271 AMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             GSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             CCCCCCccceEEEEECCCCCCEEEEEe
Confidence            01 1   33567888875444565554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.83  E-value=12  Score=30.86  Aligned_cols=214  Identities=6%  Similarity=0.022  Sum_probs=109.2

Q ss_pred             cCCCCeEEEEe--cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC--------------CeEEEEE
Q 016457           47 KNDWSLMAVSL--STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD--------------GTIRAWD  110 (389)
Q Consensus        47 ~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d--------------g~i~iwd  110 (389)
                      +.++..|+...  .++.|...+.+ |.....+..  ..+  --+++++  ..|+-+...              ..|+..+
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~~--~~i~~~g--~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DTA--MYINADK--NYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EEE--EEEEECS--SEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cce--eeEEEcC--CEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            34666666654  25666666654 333333332  122  3446677  566655432              3567777


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEee----cCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAG----CGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA  186 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  186 (389)
                      +...+.. .+..  ...  ..|++.++.|+-+.    ....|...++. +.....+. .+..    ..++++++.++.+.
T Consensus        95 ~dg~~~~-~l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt-~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           95 RNGHGST-VLDP--DPC--IYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIK-NHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             TTSCCCE-EEEC--SCE--EEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEE-SSCC----CCSEEETTEEEEEC
T ss_pred             CCCCcce-Eeec--CCc--cEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEe-CCCc----eEeeEECCEEEEEe
Confidence            7655432 2322  222  25666788888776    24456666665 33344454 2322    45677786344444


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC--CcEEEEEcCCCceeEEeecccccccCCc
Q 016457          187 SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI--ETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       187 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      .....|...++.++.     ...+..  .... ..+. |++.+|+-....  ..|..-++.... ...+..         
T Consensus       164 ~g~~~Iy~~~l~g~~-----~~~l~~--~~~~-~~~~-P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~---------  224 (302)
T 3s25_A          164 PKNGQLYRYDTASQS-----EALFYD--CNCY-KPVV-LDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE---------  224 (302)
T ss_dssp             TTTCCEEEEETTTTE-----EEEEEC--SCEE-EEEE-EETTEEEEEEGGGTTEEEEECSSSCC-CEECSC---------
T ss_pred             CCCceEEEEECCCCC-----EEEEeC--CCcc-ceee-ecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC---------
Confidence            336778888887432     112211  2222 2355 444455544433  255555554333 333332         


Q ss_pred             cCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          265 TLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                           ..+  ..|+|+++.+|.++....+.|..-++....
T Consensus       225 -----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          225 -----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             -----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             -----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence                 222  237888885543333344677777776544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.29  E-value=21  Score=35.02  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          216 SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      .+.+++.. ++..++++-+.|+++++|++.+++++.+..-
T Consensus       237 ~~~~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeec-CCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            45566666 6677999999999999999999999988653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.31  E-value=26  Score=30.98  Aligned_cols=104  Identities=12%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             cceEEEeecCCCC-eEEEEecCCeEEEEeCCCce---eeeeec---------CCCCcEEEEEEeCC----CCCCEEEEEe
Q 016457           39 DYVFEIVPKNDWS-LMAVSLSTNVVKLYSPVTGQ---YSGECK---------GHSSTVNQISFSGP----STPHVLHSCS  101 (389)
Q Consensus        39 ~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~---~~~~~~---------~~~~~v~~i~~~~~----~~~~~l~s~~  101 (389)
                      .....|+|.|++. .|+++...|.|++++.....   .+..+.         ........|+|+|+    +  .+.++-+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~--~lYv~yt   91 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG--KLYVSYT   91 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC--EEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC--EEEEEEe
Confidence            4567999999996 56667789999999754221   122111         11456889999996    3  3444333


Q ss_pred             cC------------CeEEEEEccC----------CeEEEEEE--cCCCCeEEEEEeCCCCeEEEeec
Q 016457          102 SD------------GTIRAWDTRS----------FHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus       102 ~d------------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                      .+            ..|.-|.+..          .+.+..+.  .....-..|+|.|++...++.|.
T Consensus        92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            21            1344455432          23444443  12456788999998877777665

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=82.06  E-value=21  Score=29.80  Aligned_cols=228  Identities=11%  Similarity=0.012  Sum_probs=126.2

Q ss_pred             CCccccCCCCeEEEEecCc---------eee--eeecCcceEEEeecCCCCeEEEEecCCeEEEEe---CCC------ce
Q 016457           12 PKSQSCDNVNSIKRFGLKN---------SIQ--TNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYS---PVT------GQ   71 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~---------~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~---~~~------~~   71 (389)
                      |..-+.+.+|.|+--.+..         -..  .+...+.+..+........|+.-+..|.++-..   +..      |.
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            3344566777777665321         111  122255566665555556666666778766554   332      33


Q ss_pred             eeee---ecCCCCcEEEEEEeCC-CCCCEEEEEecCCeEEEEEccCCe-------EEEEEEcCCCCeEEEEEeCCCCeEE
Q 016457           72 YSGE---CKGHSSTVNQISFSGP-STPHVLHSCSSDGTIRAWDTRSFH-------EVWSVTAGSQEIFCFSFGGSTDYLL  140 (389)
Q Consensus        72 ~~~~---~~~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~  140 (389)
                      ++..   +. ..+.|.++...++ ....+++.++.+|.++--.+....       ....++. .+.+..+........++
T Consensus        84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il  161 (327)
T 3uc1_A           84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL  161 (327)
T ss_dssp             EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred             EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence            3222   22 3455666544432 111699999999999988875422       2223333 35565555554667888


Q ss_pred             EeecCCeEEEEECc--CC---------ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC---cc
Q 016457          141 AAGCGSQIQFWDWR--NK---------KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD---DL  206 (389)
Q Consensus       141 ~~~~d~~i~iwd~~--~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~  206 (389)
                      ..+..|.+..+...  .-         .....+.  ....|.++...+.+. .++..+..|.++.-.+..-....   .-
T Consensus       162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~R~~~G  238 (327)
T 3uc1_A          162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN--IDDRLLSLNVVREGT-YLLVATSGGYAKRTAIEEYPVQGRGGKG  238 (327)
T ss_dssp             EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC--TTCCEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             EEECCCeEEEEECcccccCcCCcCCCCeeeecCC--CCCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence            88888998888765  21         1122232  345677776666554 88999999999988765211000   00


Q ss_pred             c--eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          207 L--ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       207 ~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      +  ..+......+..+... .+...++..+.+|.+..++..
T Consensus       239 ~~~~~l~~~~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          239 VLTVMYDRRRGRLVGALIV-DDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EESSCCCTTTCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEEecCCCCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence            1  1111112344444444 334456667777777666654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.79  E-value=38  Score=31.91  Aligned_cols=241  Identities=6%  Similarity=-0.018  Sum_probs=124.5

Q ss_pred             eEEEe-ecCCCCeEEEEecCC-----eEEEEeCCCceeeee-ecC-CCC------cEEEEEEeCCCCCCEEEEEe-----
Q 016457           41 VFEIV-PKNDWSLMAVSLSTN-----VVKLYSPVTGQYSGE-CKG-HSS------TVNQISFSGPSTPHVLHSCS-----  101 (389)
Q Consensus        41 v~~~~-~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~-~~~-~~~------~v~~i~~~~~~~~~~l~s~~-----  101 (389)
                      ...+. ++|++++++.+-+.|     .++++|+.+++.+.. +.. -+.      ....++|..++  .++++..     
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~--~~~~~~~~~~~~  208 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD--TIIFNLVLHKNE  208 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT--EEEECCCCSTTC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC--EEEEEeCCCCCC
Confidence            34455 899999888775533     799999999987642 220 000      12345787443  3444321     


Q ss_pred             -----cCCeEEEEEccCC--eEEEEEEcCCCCe-EEEEEeCCCCe-----EEEeec---CCeEEEEECcC--Cceeeeee
Q 016457          102 -----SDGTIRAWDTRSF--HEVWSVTAGSQEI-FCFSFGGSTDY-----LLAAGC---GSQIQFWDWRN--KKQVACLE  163 (389)
Q Consensus       102 -----~dg~i~iwd~~~~--~~~~~~~~~~~~v-~~~~~~~~~~~-----l~~~~~---d~~i~iwd~~~--~~~~~~~~  163 (389)
                           ....|+.|.+-+.  +-...+......+ .+...+++++.     +++.+.   ...+.+.|...  ++ +..+.
T Consensus       209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~  287 (711)
T 4hvt_A          209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN  287 (711)
T ss_dssp             BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred             cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence                 1246888887654  2334455543333 23444555553     333332   34567777653  32 22232


Q ss_pred             ecccCCeeEEEEecCCCCeEEEE----------eCCCcEEEEecCCCCCC---Cccceeeec--cCCceeeEEEecCCCc
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSA----------SVDGLICTFDTGGDIND---DDLLESVIN--VGTSVGKVGFFGETNK  228 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~i~d~~~~~~~---~~~~~~~~~--~~~~i~~~~~~~~~~~  228 (389)
                      .....   .+..+..+. +++..          ...+.|...|+.+....   ......+..  ....+..+.+. .+ .
T Consensus       288 ~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~  361 (711)
T 4hvt_A          288 MPSDA---TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT-KD-R  361 (711)
T ss_dssp             SCTTC---EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC-SS-C
T ss_pred             cCCcc---eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE-CC-E
Confidence            11111   223344442 44422          24677999998753210   111222222  33467788887 33 5


Q ss_pred             EEEEEecCC--cEEEEEcCCCc-eeEE-eecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--ceEEEEEec
Q 016457          229 HLWCLTHIE--TLSIWDWKDGQ-NVAS-FENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--GTVGYFPVN  301 (389)
Q Consensus       229 ~l~~~~~d~--~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~  301 (389)
                      ++++...++  .|.++++.+++ .... +...           ....+.....+++++.+++...+..  +.++.+|+.
T Consensus       362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp-----------~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          362 VFLATYDNVVAKVVTFTLENEQWTKPVVLKLP-----------YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEEEETTEEEEEEECEETTEECCCEEECCC-----------STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEEECCEEEEEEEECCCCceEEEeccCCC-----------CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            677777776  56777766554 2222 2110           1134555566677766544444333  567777765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.10  E-value=31  Score=30.48  Aligned_cols=112  Identities=10%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             CCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee---e------ccCCceeeEEEecC---CCcEEEEEec
Q 016457          168 EDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV---I------NVGTSVGKVGFFGE---TNKHLWCLTH  235 (389)
Q Consensus       168 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~------~~~~~i~~~~~~~~---~~~~l~~~~~  235 (389)
                      .....|+|.|++...|+++...|.|++++..... ....+..+   .      ..+.....|+++|.   ++.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4467899999983256677789999999765321 11111111   1      11456788999843   2444444332


Q ss_pred             C------------CcEEEEEcCCC----------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecC
Q 016457          236 I------------ETLSIWDWKDG----------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTG  291 (389)
Q Consensus       236 d------------~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~  291 (389)
                      +            ..|.-|.+..+          +.+..+....          ....-..+.|.|||. +|+.+|+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~----------~~H~g~~l~fgpDG~-LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH----------RKHLGGQLLFGPDGF-LYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS----------SSSCEEEEEECTTSC-EEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC----------CcccCCcEeECCCCc-EEEEeCCC
Confidence            1            14545665421          1222221100          113457899999984 67777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 5e-13
 Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 38  DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL 97
              V  +    D  L          KL+    G       GH S +N I F      +  
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAF 241

Query: 98  HSCSSDGTIRAWDTRSFHEVWSVTAGSQE--IFCFSFGGSTDYLLAAGCGSQIQFWDWRN 155
            + S D T R +D R+  E+ + +  +    I   SF  S   LLA         WD   
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
             +   L   H   V+ +    +    V + S D  +  ++
Sbjct: 302 ADRAGVL-AGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 23/180 (12%), Positives = 63/180 (35%), Gaps = 10/180 (5%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
           +GH + +  + +   +   +L S S DG +  WD+ + ++V ++   S  +   ++  S 
Sbjct: 52  RGHLAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
           +Y+   G  +    ++ + ++    +          +       +  +         + D
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV------TSSGD 163

Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE--TLSIWDWKDGQNVASFE 254
           T   + D +  +         G V            ++     +  +WD ++G    +F 
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 21/202 (10%)

Query: 14  SQSCDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY 72
           S S D    +        ++T  G  ++V  + P  D +L+A   +   V+++   T + 
Sbjct: 118 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177

Query: 73  SGECKGHSSTVNQISFSGPSTP------------------HVLHSCSSDGTIRAWDTRSF 114
             E + H   V  IS++  S+                     L S S D TI+ WD  + 
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 115 HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVH 174
             + ++      +    F     ++L+      ++ WD++NK+ +  L  +H   VT + 
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLD 296

Query: 175 FVPNNQNKVVSASVDGLICTFD 196
           F       VV+ SVD  +  ++
Sbjct: 297 FHKTA-PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 19/280 (6%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
            GH S V ++ F  P    ++ S S D TI+ WD  +     ++   +  +   SF  S 
Sbjct: 14  SGHRSPVTRVIFH-PVFSVMV-SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
             L +      I+ WD++  + +  +             +  N + +VSAS D  I  ++
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--SSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA 256
                                 ++    +    +   ++ +T+ +W     +  A     
Sbjct: 130 V-----QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV 316
           R +        +  Y       G         G    +            + G     LV
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 317 GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
            GH   VR VL             G F  +  +D  L  W
Sbjct: 245 -GHDNWVRGVLFHS---------GGKFILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 31/246 (12%), Positives = 70/246 (28%), Gaps = 19/246 (7%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA 108
            +S+M  +     +K++   TG +    KGH+ +V  ISF          S      +  
Sbjct: 28  VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87

Query: 109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVE 168
           +              +         G  D++++A     I+ W+ +    V         
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGH--R 143

Query: 169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES---------------VINV 213
           +  ++     +   + S S D  +  +         +L E                    
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 214 GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV 273
             +  +    G+    L   +  +T+ +WD   G  + +     +            + +
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263

Query: 274 DCHYPG 279
            C    
Sbjct: 264 SCADDK 269

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 50  WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW 109
              +       +VK++ P T       +GH++ V  + F G      + S S D +IR W
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG----IHVVSGSLDTSIRVW 202

Query: 110 DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED 169
           D  + + + ++T               + L++    S ++ WD +  + +    +   + 
Sbjct: 203 DVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-LQGPNKH 259

Query: 170 VTQVHFVPNNQNKVVSASVDGLICTFDT 197
            + V  +  N+N V+++S DG +  +D 
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDL 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 19/180 (10%), Positives = 53/180 (29%), Gaps = 18/180 (10%)

Query: 76  CKGHSSTVN-QISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG 134
            KGH   V   + F G    + + S S D T++ W   +   + ++   +  ++      
Sbjct: 12  LKGHDDHVITCLQFCG----NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 135 STDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT 194
           +     +     ++   +            S V  +        +              +
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS-------------GS 114

Query: 195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE 254
            D    + D +  + +  +   V  V       + +    +   + +WD +    + + +
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 60  NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS 119
             +K+++  T ++     GH   +  + +       ++ S SSD TIR WD      +  
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRV 213

Query: 120 VTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE--------ESHVEDVT 171
           +    + + C  F      +++     +I+ WD                     H   V 
Sbjct: 214 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 172 QVHFVPNNQNKVVSASVDGLICTFD 196
           ++ F   ++ ++VS+S D  I  +D
Sbjct: 272 RLQF---DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 30/296 (10%), Positives = 73/296 (24%), Gaps = 31/296 (10%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
              S  V  + +        + S   D TI+ WD  +      +T  +  + C  +    
Sbjct: 12  SETSKGVYCLQYDD----QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD 196
               ++    ++   +              V  +   + +    +K  S +V  +    D
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 197 TGGDINDDDLLESVINVGTSVGKVGFFG----------ETNKHLWCLTHIETLSIWDWKD 246
                       +V  V      +               T + +  L   +         
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 247 GQNVASFENARSL----ASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY 302
            + V S  +  ++          L  ++   +       +N  ++ G   G +  + +  
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247

Query: 303 GGAATIGPPEAVL--VGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
                       L  +  H+  V  +                   +   D  +  W
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQF-----------DEFQIVSSSHDDTILIW 292

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 16/121 (13%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 77  KGHSSTV-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135
           +GH ++V   + F      + + + + D  IR +D+ +   +  ++     ++   +   
Sbjct: 9   RGHMTSVITCLQFED----NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 63

Query: 136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF 195
              L++      ++ WD +        E  +            N   +V+ S D  +  +
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 196 D 196
            
Sbjct: 124 K 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 94  PHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDW 153
                  S+          +       +     +   +    +D +L +G  +Q   ++ 
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 310

Query: 154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC 193
           R+ K V        + +  V+F       V +   DG   
Sbjct: 311 RSGKLVHANILKDADQIWSVNFKGKTL--VAAVEKDGQSF 348

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 28/189 (14%), Positives = 46/189 (24%), Gaps = 3/189 (1%)

Query: 99  SCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKK 157
           +    G I   D  S   V  +  G    I   S  G   YLL  G  ++I   D   K+
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGR--YLLVIGRDARIDMIDLWAKE 94

Query: 158 QVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSV 217
                E     +   V        +                 D    +  + V   G +V
Sbjct: 95  PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154

Query: 218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHY 277
               +  E        +H     I + K+   V              ++    +  D  +
Sbjct: 155 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW 214

Query: 278 PGEGENLWV 286
                    
Sbjct: 215 DSSHRYFMT 223

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 38  DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPH-- 95
            D+V  +    +   +        V  +   +G      +GH ++V  ++ +  S+    
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 96  --VLHSCSSDGTIRAWDTR 112
             V  + S D   R W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 52  LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDT 111
           L  +  + N     +P +G       GH   V  ++ +  +  ++L S S D  +  WD 
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYIL-SGSKDRGVLFWDK 337

Query: 112 RSFHEVWSVTAGSQEIFC------FSFGGSTDYLLAAGCGSQIQFWDWR 154
           +S + +  +      +         S G   +         + + W ++
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 47/283 (16%), Positives = 95/283 (33%), Gaps = 18/283 (6%)

Query: 76  CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135
                  +  + FS         + + D  IR WD  +   V  +    Q+I+   +  S
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 136 TDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTF 195
            D L++      ++ WD R  +       S  + VT V   P +   + + S+D  +  +
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

Query: 196 DTGGDINDDDLLESVINVGTSVGKVGF--FGETNKHLWCLTHIETLSIWDWKDGQNVASF 253
           D+      + L     +       V    F    + +   +   ++ +W+ ++  N +  
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 254 ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEA 313
           +   S   +   +   D+ +        E  +++ G+    V ++    G       P  
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGN------PLL 344

Query: 314 VLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
           +L G H   V SV         P  +      TG  D +   W
Sbjct: 345 MLQG-HRNSVISVAVANGSSLGPEYNVFA---TGSGDCKARIW 383

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 38/346 (10%), Positives = 89/346 (25%), Gaps = 45/346 (13%)

Query: 49  DWSLMAVSLSTNVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTI 106
           D + +A+  + + V +Y     ++    E K H+  V  + ++  S  + + +C +D   
Sbjct: 18  DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--NRIVTCGTDRNA 75

Query: 107 RAWDTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE 164
             W  +      ++          C  +  +            I    +  +      + 
Sbjct: 76  YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 135

Query: 165 SHVEDVTQVHFVPNNQN-------------KVVSASVDGLICTFDTGGDINDDDLLESVI 211
                 + V  +  + N             ++ SA +  +          +     E + 
Sbjct: 136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF 195

Query: 212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ---------------NVASFENA 256
              +S G V     +             ++      +                V     +
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 255

Query: 257 RSLASDS------WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP 310
             +A+        +T D     +      +        G  A            +     
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 315

Query: 311 PEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCW 356
             A L   H   V  +  +   + + +Q       T G DG +  W
Sbjct: 316 AGAGLDSLHKNSVSQISVLSGGKAKCSQF-----CTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 121 TAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNN 179
           +   + I C ++      +       ++  ++    K V   E + H   VT V + P++
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 180 QNKVVSASVDGLICTFD 196
            N++V+   D     + 
Sbjct: 64  -NRIVTCGTDRNAYVWT 79

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 76  CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135
                S V  + FS  S   V+   S                +                 
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 136 TD--YLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLI 192
            D       G  + I+ WD    K V     +       QV  V     +++S S+DG +
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 193 CTFD 196
             ++
Sbjct: 321 NFYE 324

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 95  HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWD 152
             + S S+D TI+ W+  +     ++  G++ E        +   L++      I F +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG---SQEIFCFSFG 133
           +     ++ I    PS   +L   S DG++  +      +   +         + C +F 
Sbjct: 8   QAPKDYISDIKII-PSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 134 GSTDYLLAAGCGSQIQFWDWRNKKQVAC 161
            +TD  +  G                  
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQ 93

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 27/285 (9%), Positives = 59/285 (20%), Gaps = 38/285 (13%)

Query: 34  TNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFS---- 89
              G       +    ++  A    T+ V+++ PVT     + +   +    +       
Sbjct: 70  AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129

Query: 90  --GPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ 147
               S+  +L                  +       S   F    G +  + L +   S 
Sbjct: 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK--SASCFHIHPGAAATHYLGSCPASL 187

Query: 148 IQFWDWRNKKQVAC--LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDD 205
                            + +  ++ +      N    +V A    ++             
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247

Query: 206 LLESVINVGTSVGKVG---------------FFGETNKHLWCLTHIETLSIWDWKDGQNV 250
            ++   +   +                              CL   E  S      GQ  
Sbjct: 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307

Query: 251 ASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV 295
               N     +     D             G +       G   +
Sbjct: 308 GPISNGHDSDAIIAAQD-------------GASDNYANSAGTEVL 339

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 3/77 (3%)

Query: 76  CKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGS 135
              H S V  + F+         S   D  + AW T     ++  +  S  +        
Sbjct: 261 LHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVD 317

Query: 136 TDYLLAAGCGSQIQFWD 152
             Y++      +   ++
Sbjct: 318 DKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 10/149 (6%), Positives = 42/149 (28%), Gaps = 6/149 (4%)

Query: 48  NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR 107
           ++      +   +       +      +    +S +  + +        +   SS+  + 
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251

Query: 108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV 167
             +    +++         +    F     + ++ G  + +  W       +   +    
Sbjct: 252 HVNKPDKYQLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ES 306

Query: 168 EDVTQVHFVPNNQNKVVSASVDGLICTFD 196
             V       +++  +V+ S D     ++
Sbjct: 307 SSVLSCDISVDDK-YIVTGSGDKKATVYE 334

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 17/108 (15%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIF-------- 128
           K H + +  +S           SCS DG ++ WD +                        
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 129 ----CFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVT 171
                         L+A       + F+    + +   +    ++ + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 114

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 2/85 (2%)

Query: 77  KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGST 136
            GH+  +  +S S  +    L S  ++G I +WD  +             +       S 
Sbjct: 9   YGHNKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 137 DYLLAAGCGSQIQFWDWRNKKQVAC 161
             L        ++          + 
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSS 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.67
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.22
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.9
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.28
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.25
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.19
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.09
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.07
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.99
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.97
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.89
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.82
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.54
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.47
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.7
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.54
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.36
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.5
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.76
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	83.8

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-46  Score=322.48  Aligned_cols=285  Identities=12%  Similarity=0.166  Sum_probs=247.8

Q ss_pred             eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee-----eeecCCCCcEEEEEEeCCCCCCEEEEEecCCe
Q 016457           31 SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS-----GECKGHSSTVNQISFSGPSTPHVLHSCSSDGT  105 (389)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  105 (389)
                      .+.++.+...|.+++|+|+|++||+|+ ||.|+|||+.++...     ....+|.+.|.+++|+|++  ++|++|+.||+
T Consensus        44 ~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg--~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--CTLIVGGEAST  120 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--SEEEEEESSSE
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC--CEEEEeecccc
Confidence            344555588999999999999999998 899999999765322     2235699999999999999  79999999999


Q ss_pred             EEEEEccC--CeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          106 IRAWDTRS--FHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       106 i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      |++||+..  .+....+..|...+.+++|+|++..+++++.|+.|++||+++++...... .|...+.+++|++++. .+
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~~~~-~~  198 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGT-KL  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc-cc
Confidence            99999874  45667788899999999999999999999999999999999998888877 8999999999999995 99


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++++.|+.+++||++++.     ......+...|.+++|+ +++++|++++.|+.+++||+.+++......         
T Consensus       199 ~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------  263 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGR-----QLQQHDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQLHL---------  263 (337)
T ss_dssp             EEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEECC---------
T ss_pred             ccccccccccccccccce-----eecccccccceEEEEEc-ccccccceeccccccccccccccccccccc---------
Confidence            999999999999998542     33345678899999999 788899999999999999999887654432         


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                          |...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+  .|...|.++         +|+|++++
T Consensus       264 ----~~~~i~~v~~s~~g~--~l~s~s~Dg~i~iwd~~~~~~------~~~~--~~~~~v~~~---------~~s~d~~~  320 (337)
T d1gxra_         264 ----HESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGAS------IFQS--KESSSVLSC---------DISVDDKY  320 (337)
T ss_dssp             ----CSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCE------EEEE--ECSSCEEEE---------EECTTSCE
T ss_pred             ----cccccceEEECCCCC--EEEEEeCCCeEEEEECCCCCE------EEEc--cCCCCEEEE---------EEeCCCCE
Confidence                778999999999999  889999999999999998775      4444  588899999         99999999


Q ss_pred             EEEecCCCeEEEEec
Q 016457          344 GWTGGEDGRLCCWLS  358 (389)
Q Consensus       344 l~s~~~dg~v~iW~~  358 (389)
                      |++|+.||+|+||++
T Consensus       321 l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEEE
Confidence            999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-46  Score=327.11  Aligned_cols=329  Identities=17%  Similarity=0.217  Sum_probs=256.3

Q ss_pred             CccccCCCCeEEEEecCc-------eeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec--------
Q 016457           13 KSQSCDNVNSIKRFGLKN-------SIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK--------   77 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~--------   77 (389)
                      .......++.+.+|+...       ....+.+.+.|+|++|+|||++||+|+ |+.|+|||+.+++.+..+.        
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence            344566778889998641       223333488999999999999999987 8999999999888766553        


Q ss_pred             ----------CCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCe
Q 016457           78 ----------GHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQ  147 (389)
Q Consensus        78 ----------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  147 (389)
                                .|...|.+++|+|++  ++|++|+.||.|++||...++.+..+.+|...|.++++++++..+++++.++.
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~--~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ----------CCCCBEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccCCCCCEEEEEECCCC--Ccceeccccccccccccccccccccccccccccccccccccccccccccccee
Confidence                      466779999999998  79999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC---ccceeeeccCCceeeEEEec
Q 016457          148 IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD---DLLESVINVGTSVGKVGFFG  224 (389)
Q Consensus       148 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~i~~~~~~~  224 (389)
                      +++||.++........  +.....++.+.+...++|++++.|+.|++||.+++....   ........|...|.+++|+ 
T Consensus       187 i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-  263 (388)
T d1erja_         187 VRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-  263 (388)
T ss_dssp             EEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-
T ss_pred             eeeeeccccccccccc--cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-
Confidence            9999999888777765  445566666666544699999999999999998653211   1122234577899999999 


Q ss_pred             CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          225 ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +++.+|++++.|+.|++||+.++....................|...|.+++|+|+++  +|++|+.||.|++||+.+++
T Consensus       264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--EEEEEETTSEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC--EEEEEeCCCEEEEEECCCCc
Confidence            7889999999999999999987654433221111000011112778999999999999  89999999999999999887


Q ss_pred             ccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       305 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      .      +..+. +|...|.++....   ...|+|++.+|+||+.||+|+||+++
T Consensus       342 ~------~~~l~-~H~~~V~~~~~~~---~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         342 P------LLMLQ-GHRNSVISVAVAN---GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             E------EEEEE-CCSSCEEEEEECS---SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             E------EEEEe-CCCCCEEEEEEec---CcccCCCCCEEEEEeCCCEEEEEeee
Confidence            6      67776 9999999884211   12689999999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-46  Score=315.40  Aligned_cols=288  Identities=19%  Similarity=0.288  Sum_probs=263.1

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWD  110 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  110 (389)
                      ..++.| .+.|++++|+|++++|++|+.||+|+|||+++++.+..+.+|...|.+++|+|++  .++++++.++.+.+|+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG--KLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS--SEEEEEETTSCCCEEE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc--cccccccccccccccc
Confidence            456777 8899999999999999999999999999999999999999999999999999999  7999999999999999


Q ss_pred             ccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          111 TRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       111 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ....+....+..|...+.++.++|++..+++++.|+.+++||+++++.+..+. +|...+.+++|+|++. +|++++.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~d~  165 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSNDQ  165 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCC-EEEEEeCCC
Confidence            99999988888999999999999999999999999999999999999999998 8999999999999995 999999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecC-------------------CCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGE-------------------TNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      .|++|++.++    .....+..+...+..+.+.|.                   .+.++++++.|+.|++||+.+++++.
T Consensus       166 ~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         166 TVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             CEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEEEeeccc----eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence            9999999954    445566677777888877632                   23578999999999999999999999


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPS  331 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  331 (389)
                      .+.+            |...|.+++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|...|+++     
T Consensus       242 ~~~~------------~~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~------~~~~~-~h~~~V~~~-----  295 (317)
T d1vyhc1         242 TLVG------------HDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRC------MKTLN-AHEHFVTSL-----  295 (317)
T ss_dssp             EEEC------------CSSCEEEEEECSSSS--CEEEEETTTEEEEECCTTSCC------CEEEE-CCSSCEEEE-----
T ss_pred             EEeC------------CCCCEEEEEECCCCC--EEEEEECCCeEEEEECCCCcE------EEEEc-CCCCCEEEE-----
Confidence            9887            668999999999998  889999999999999998776      67776 999999999     


Q ss_pred             ccCCCCCCCceeEEEecCCCeEEEEe
Q 016457          332 VQGRPAQSHGIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       332 ~~~~~~s~~~~~l~s~~~dg~v~iW~  357 (389)
                          +|+|++++|+||+.||+|++||
T Consensus       296 ----~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 ----DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ----EECSSSSCEEEEETTSEEEEEC
T ss_pred             ----EEcCCCCEEEEEeCCCeEEEeC
Confidence                9999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-46  Score=315.55  Aligned_cols=290  Identities=12%  Similarity=0.061  Sum_probs=246.7

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE-
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE-  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-  116 (389)
                      .+.+..++++|+|+.|+.+. ++.|.+|++++++....+.+|...|++++|+|++  ++|++|+.||+|++||+.++.. 
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g--~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG--YYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC--CeEeccccCceEeeeeeeccccc
Confidence            34566889999999999986 7789999999999999999999999999999999  7999999999999999987754 


Q ss_pred             -EEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          117 -VWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       117 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                       ...+..|..+|.+++|+|++..+++++.  +..+++|++++++...++. +|...|++++|+|+++..|++|+.|+.|+
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             cccccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccccccccceeeecccccccccc
Confidence             3567889999999999999999998886  5679999999999999888 89999999999999976789999999999


Q ss_pred             EEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          194 TFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       194 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                      +||+++.    ........|...|.++.|+ ++++++++++.|+.|++||+.++.....+.....     ...+|...|.
T Consensus       173 i~d~~~~----~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~~~h~~~V~  242 (311)
T d1nr0a1         173 IFEGPPF----KFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-----KNVAHSGSVF  242 (311)
T ss_dssp             EEETTTB----EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-----SSCSSSSCEE
T ss_pred             ccccccc----ccccccccccccccccccC-cccccccccccccccccccccccccccccccccc-----cccccccccc
Confidence            9999954    4566667788999999999 6889999999999999999999988887764321     1123788999


Q ss_pred             eecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc-eeeeeccCCCcccCCCCCCCceeEEEecCCCe
Q 016457          274 DCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT-AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR  352 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  352 (389)
                      +++|+|+++  +|++|+.||.|+|||+.+++.      +..+. .|. .....+         .+.+++.+|++++.||.
T Consensus       243 ~~~~s~~~~--~l~tgs~Dg~v~iwd~~t~~~------~~~l~-~~~~~~~~~~---------~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         243 GLTWSPDGT--KIASASADKTIKIWNVATLKV------EKTIP-VGTRIEDQQL---------GIIWTKQALVSISANGF  304 (311)
T ss_dssp             EEEECTTSS--EEEEEETTSEEEEEETTTTEE------EEEEE-CCSSGGGCEE---------EEEECSSCEEEEETTCC
T ss_pred             ccccCCCCC--EEEEEeCCCeEEEEECCCCcE------EEEEE-CCCCccceEE---------EEEecCCEEEEEECCCE
Confidence            999999999  899999999999999998876      66665 443 222222         34445667899999999


Q ss_pred             EEEEecc
Q 016457          353 LCCWLSD  359 (389)
Q Consensus       353 v~iW~~~  359 (389)
                      |++||++
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-42  Score=297.71  Aligned_cols=289  Identities=14%  Similarity=0.204  Sum_probs=255.2

Q ss_pred             eeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           31 SIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        31 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ..++++| .+.|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++  .++++|+.|+.+++|
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG--NYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS--SEEEEEETTCCEEEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc--eeeeeecccceeecc
Confidence            4567888 8999999999999999999999999999999999999999999999999999999  799999999999999


Q ss_pred             EccCC----eEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          110 DTRSF----HEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       110 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      +....    .....+.+|.......... .+..+.....+.....++........... .+...+....+.+.+. ++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~  201 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTR-LFVS  201 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSS-EEEE
T ss_pred             cccccccccccceecccccccccccccc-ccccccccccccccccccccccccccccc-ccceeEeeeccccccc-eeEE
Confidence            97653    4556677776666666655 67778888889999999988777766666 6788899999999985 9999


Q ss_pred             EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      ++.|+.|++||++++    ..+..+..|...|.+++|+ +++.+|++++.|+.|++||+.....+..+....        
T Consensus       202 ~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~--------  268 (340)
T d1tbga_         202 GACDASAKLWDVREG----MCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDN--------  268 (340)
T ss_dssp             EETTTEEEEEETTTT----EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------
T ss_pred             eecCceEEEEECCCC----cEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeeccccccccccccc--------
Confidence            999999999999854    5667777899999999999 788999999999999999999988887776543        


Q ss_pred             CCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEE
Q 016457          266 LDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGW  345 (389)
Q Consensus       266 ~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~  345 (389)
                        +...+..++|+|+++  +|++|+.||.|++||+.+++.      +..+. +|..+|+++         +|+|++++|+
T Consensus       269 --~~~~i~~~~~s~~~~--~l~~g~~dg~i~iwd~~~~~~------~~~~~-~H~~~V~~l---------~~s~d~~~l~  328 (340)
T d1tbga_         269 --IICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADR------AGVLA-GHDNRVSCL---------GVTDDGMAVA  328 (340)
T ss_dssp             --CCSCEEEEEECSSSC--EEEEEETTSCEEEEETTTCCE------EEEEC-CCSSCEEEE---------EECTTSSCEE
T ss_pred             --ccCceEEEEECCCCC--EEEEEECCCEEEEEECCCCcE------EEEEc-CCCCCEEEE---------EEeCCCCEEE
Confidence              667899999999999  899999999999999998776      66775 999999999         9999999999


Q ss_pred             EecCCCeEEEEe
Q 016457          346 TGGEDGRLCCWL  357 (389)
Q Consensus       346 s~~~dg~v~iW~  357 (389)
                      |||.||.|++||
T Consensus       329 s~s~Dg~v~iWd  340 (340)
T d1tbga_         329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEccCCEEEEeC
Confidence            999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-42  Score=302.81  Aligned_cols=295  Identities=15%  Similarity=0.143  Sum_probs=233.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  115 (389)
                      .++|+|++|+|++++||+|+.|+.|+|||..+++  .+..+.+|.++|.+++|+|++  ++|++|+.|++|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~--~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--NRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--TEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC--CEEEEEECCCeEEEEeecccc
Confidence            6789999999999999999999999999998775  567789999999999999999  799999999999999998776


Q ss_pred             EEE--EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee---eeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          116 EVW--SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA---CLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       116 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      ...  .+..|...|++++|+|++..+++++.|+.|++|++.......   .....|...|.+++|+|++. +|++|+.|+
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~  163 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDF  163 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCc
Confidence            544  445678899999999999999999999999999988665332   22236888999999999996 999999999


Q ss_pred             cEEEEecCCCCCC--------------CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecc
Q 016457          191 LICTFDTGGDIND--------------DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENA  256 (389)
Q Consensus       191 ~i~i~d~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  256 (389)
                      .|++||.......              ...+.....|...|.+++|+ +++++|++++.|+.|++||+.+++.+..+.. 
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  241 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLAS-  241 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceEEeeecccceeeeec-
Confidence            9999998753211              12234445677889999999 6788999999999999999999999988876 


Q ss_pred             cccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc--cc--------------------------
Q 016457          257 RSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA--TI--------------------------  308 (389)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~--~~--------------------------  308 (389)
                                 |..+|.+++|+|+++  +|++| .|+.+++|........  ..                          
T Consensus       242 -----------~~~~v~s~~fs~d~~--~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (371)
T d1k8kc_         242 -----------ETLPLLAVTFITESS--LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  307 (371)
T ss_dssp             -----------SSCCEEEEEEEETTE--EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             -----------ccccceeeeecCCCC--EEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence                       668999999999987  77766 4777777765443210  00                          


Q ss_pred             ------CCCeEEEecccceeeeeccCCCcccCCCCCCCc----eeEEEecCCCeEEEEeccC
Q 016457          309 ------GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHG----IFGWTGGEDGRLCCWLSDD  360 (389)
Q Consensus       309 ------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~----~~l~s~~~dg~v~iW~~~~  360 (389)
                            ......+...|...|+++         ++.+.+    ..|+|+|.||.|++|+++.
T Consensus       308 ~~~~~~~~~~~~~~~~H~~~I~~i---------~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         308 ASSEGSAAAGAGLDSLHKNSVSQI---------SVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             C---------CCCSSSSSSCEEEE---------EEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eEEeccccccceecccccCCEEEE---------EEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                  000011112366667776         444332    3589999999999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-41  Score=290.06  Aligned_cols=263  Identities=14%  Similarity=0.235  Sum_probs=232.5

Q ss_pred             CCccccCCCCeEEEEecCc-----eeeeee--c-CcceEEEeecCCCCeEEEEecCCeEEEEeCCC--ceeeeeecCCCC
Q 016457           12 PKSQSCDNVNSIKRFGLKN-----SIQTNF--G-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT--GQYSGECKGHSS   81 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~~-----~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~   81 (389)
                      ...++++ |+.|++||+..     .+....  + .+.|.+++|+|++++|++|+.||.|++||+..  ++....+..|..
T Consensus        64 ~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  142 (337)
T d1gxra_          64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP  142 (337)
T ss_dssp             SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred             CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccc
Confidence            3567776 79999999852     222222  2 67899999999999999999999999999874  456677888999


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVAC  161 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  161 (389)
                      .+.+++|+|++  .++++++.|+.|++|++.+++.......|...|.+++|++++..+++++.|+.|++||+++++.+..
T Consensus       143 ~v~~~~~~~~~--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         143 ACYALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             CEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecc
Confidence            99999999998  7999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      +.  |...|.+++|+|++. .|++++.|+.+++||+++..     ......|...|.+++|+ +++++|++++.|+.|++
T Consensus       221 ~~--~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~v~~s-~~g~~l~s~s~Dg~i~i  291 (337)
T d1gxra_         221 HD--FTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EE--CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred             cc--cccceEEEEEccccc-ccceeccccccccccccccc-----cccccccccccceEEEC-CCCCEEEEEeCCCeEEE
Confidence            76  889999999999995 99999999999999998542     34566788999999999 78889999999999999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ||+.+++.+..+.             |...|.+++|+|+++  +|++|+.||.|+|||+-
T Consensus       292 wd~~~~~~~~~~~-------------~~~~v~~~~~s~d~~--~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         292 WRTPYGASIFQSK-------------ESSSVLSCDISVDDK--YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EETTTCCEEEEEE-------------CSSCEEEEEECTTSC--EEEEEETTSCEEEEEEE
T ss_pred             EECCCCCEEEEcc-------------CCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEEE
Confidence            9999999887765             668899999999998  89999999999999973

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-41  Score=284.40  Aligned_cols=292  Identities=12%  Similarity=0.087  Sum_probs=227.8

Q ss_pred             Cceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCCeE
Q 016457           29 KNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDGTI  106 (389)
Q Consensus        29 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i  106 (389)
                      +...+.+.| .++|++++|+|++++|++|+.||+|++||+++++.+..+. +|...|++++|+|++   .+++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g---~~~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---DLFTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---CEEEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc---eeecccceeeE
Confidence            445677888 8999999999999999999999999999999998888774 699999999999998   46677889999


Q ss_pred             EEEEccCCeE---EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          107 RAWDTRSFHE---VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       107 ~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      ++|+......   ......+...+.+++|+|++..+ +++.++.+.+|+...  . ....  ....+.+++|+|++. +|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~--~-~~~~--~~~~~~~~~~s~~~~-~l  151 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGK--L-TEVP--ISYNSSCVALSNDKQ-FV  151 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTE--E-EEEE--CSSCEEEEEECTTSC-EE
T ss_pred             EEeccCCccccccccccccccccccccccccccccc-ccccccccccccccc--c-cccc--ccccccccccccccc-cc
Confidence            9999864321   12234457789999999877655 455568999998542  2 2222  445688999999995 99


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++|+.|+.|++||++++.   ........|...|.+++|+ +++.+|++++.|+.|++||+.++..........      
T Consensus       152 ~~g~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------  221 (299)
T d1nr0a2         152 AVGGQDSKVHVYKLSGAS---VSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWT------  221 (299)
T ss_dssp             EEEETTSEEEEEEEETTE---EEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC------
T ss_pred             cccccccccccccccccc---ccccccccccccccccccc-ccccccccccccccccccccccccccccccccc------
Confidence            999999999999998542   1223445688899999999 688899999999999999998776554332211      


Q ss_pred             ccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCcee
Q 016457          264 WTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                         .|...|.+++|+|+++  +|++|+.||.|++||+.++..    .++......+...|..+          +++++.+
T Consensus       222 ---~h~~~v~~l~~s~~~~--~l~sgs~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~----------~~~~~~~  282 (299)
T d1nr0a2         222 ---FHTAKVACVSWSPDNV--RLATGSLDNSVIVWNMNKPSD----HPIIIKGAHAMSSVNSV----------IWLNETT  282 (299)
T ss_dssp             ---CCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCTTS----CCEEETTSSTTSCEEEE----------EEEETTE
T ss_pred             ---cccccccccccccccc--ceEEEcCCCEEEEEECCCCCc----ceEEEecCCCCCcEEEE----------EECCCCE
Confidence               2778999999999999  899999999999999987654    11122221233556655          4466778


Q ss_pred             EEEecCCCeEEEEecc
Q 016457          344 GWTGGEDGRLCCWLSD  359 (389)
Q Consensus       344 l~s~~~dg~v~iW~~~  359 (389)
                      |+||+.||+|++||+.
T Consensus       283 l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         283 IVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEETTSCEEEEECC
T ss_pred             EEEEeCCCEEEEEecc
Confidence            9999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-40  Score=283.41  Aligned_cols=265  Identities=11%  Similarity=0.089  Sum_probs=220.5

Q ss_pred             CCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee--eeecCCCCcEEEEEEeCCCC
Q 016457           19 NVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS--GECKGHSSTVNQISFSGPST   93 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~~~~~~   93 (389)
                      .++.|.+|++.  .....+.+ .+.|++++|+|+|++||+|+.||+|+|||+.+++..  ..+.+|..+|.+++|+|++ 
T Consensus        36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-  114 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-  114 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-
T ss_pred             eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc-
Confidence            34578999986  35556666 889999999999999999999999999999887543  5578899999999999998 


Q ss_pred             CCEEEEEec--CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeeeeecccCCe
Q 016457           94 PHVLHSCSS--DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        94 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                       ++|++++.  +..+++|++.+++....+.+|...|++++|+|+++. +++++.|+.|++||+++++....+. .|...|
T Consensus       115 -~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i  192 (311)
T d1nr0a1         115 -KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFV  192 (311)
T ss_dssp             -CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccc-cccccc
Confidence             78888875  456999999999999999999999999999998886 5556779999999999999988888 899999


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC---CccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC
Q 016457          171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDIND---DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      +++.|+|++. ++++++.|+.|++||++++...   ........+|...|.+++|+ +++++|++++.||.|+|||++++
T Consensus       193 ~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         193 HSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccCcccc-ccccccccccccccccccccccccccccccccccccccccccccC-CCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999995 9999999999999999865311   11122334678899999999 78899999999999999999999


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      ++++++..+..         ....+.++.|+  ++  +|++++.||.|++||.+
T Consensus       271 ~~~~~l~~~~~---------~~~~~~~~~~~--~~--~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         271 KVEKTIPVGTR---------IEDQQLGIIWT--KQ--ALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEEECCSS---------GGGCEEEEEEC--SS--CEEEEETTCCEEEEETT
T ss_pred             cEEEEEECCCC---------ccceEEEEEec--CC--EEEEEECCCEEEEEeCC
Confidence            99998875321         12334455554  45  67899999999999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-39  Score=273.86  Aligned_cols=289  Identities=13%  Similarity=0.098  Sum_probs=224.5

Q ss_pred             CcceEEEeecCCCCeEEEEecCC-eEEEEeCCCc--eeeeeecCC-CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTN-VVKLYSPVTG--QYSGECKGH-SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~--~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~  113 (389)
                      ...+++++|+|+++.|++++.+. .|+.|+....  .....+.+| ...|++++|+|+.++.+|++|+.||+|+|||+..
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            44567999999999999886443 3556664433  345667777 4679999999865447999999999999999875


Q ss_pred             Ce--------EEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          114 FH--------EVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       114 ~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      ++        ....+..|..+|.+++|++++..+++++.  ++.+.+|+..+++.+..+. +|...|++++|+|+++.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-ecccccccccccccccceE
Confidence            43        22345667889999999999999888765  6789999999999999998 8999999999999987668


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCC
Q 016457          184 VSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDS  263 (389)
Q Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  263 (389)
                      ++++.|+.+++||..... ..........+...|.+++|+|..+.++++++.|+.|++||+++++.+..+..        
T Consensus       176 ~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~--------  246 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED--------  246 (325)
T ss_dssp             EEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB--------
T ss_pred             EEeecccccccccccccc-cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc--------
Confidence            899999999999998432 11112223456778999999966688999999999999999999999999886        


Q ss_pred             ccCCCCCceeeeccc---CCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEeccccee--eeeccCCCcccCCCCC
Q 016457          264 WTLDDVDYFVDCHYP---GEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAV--VRSVLPMPSVQGRPAQ  338 (389)
Q Consensus       264 ~~~~~~~~i~~~~~~---~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~s  338 (389)
                          |...+..+.|+   ++++  +|++++.|+.|+|||+.+++.      +..+. .|...  +..+         ++.
T Consensus       247 ----~~~~v~~~~~s~~~~dg~--~l~s~s~D~~i~iwd~~~~~~------~~~~~-~~~~~~~~~~~---------~~~  304 (325)
T d1pgua1         247 ----DQEPVQGGIFALSWLDSQ--KFATVGADATIRVWDVTTSKC------VQKWT-LDKQQLGNQQV---------GVV  304 (325)
T ss_dssp             ----TTBCCCSCEEEEEESSSS--EEEEEETTSEEEEEETTTTEE------EEEEE-CCTTCGGGCEE---------EEE
T ss_pred             ----cccccccceeeeeccCCC--EEEEEeCCCeEEEEECCCCCE------EEEEE-ecCCcccCeEE---------EEE
Confidence                44555555555   6777  889999999999999998776      55554 44433  3333         333


Q ss_pred             CC-ceeEEEecCCCeEEEEec
Q 016457          339 SH-GIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       339 ~~-~~~l~s~~~dg~v~iW~~  358 (389)
                      +. +.+|++||.||.|++|++
T Consensus       305 ~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         305 ATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTEEEEEETTSCEEEEET
T ss_pred             ECCCCEEEEEECCCEEEEEEC
Confidence            22 236799999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-38  Score=268.98  Aligned_cols=267  Identities=19%  Similarity=0.232  Sum_probs=245.6

Q ss_pred             CCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEE
Q 016457           11 QPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQIS   87 (389)
Q Consensus        11 ~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~   87 (389)
                      .+..++++.|++|++||+.  +.+.++.+ .+.|.+++|+|++.+++++..++.+.+|+....+....+.+|...+.++.
T Consensus        29 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (317)
T d1vyhc1          29 FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS  108 (317)
T ss_dssp             SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence            4568899999999999985  56777777 88999999999999999999999999999998888888899999999999


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeeccc
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHV  167 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  167 (389)
                      |++++  ..+++++.|+.+++||+++++.+..+..|...+.+++|+|++..+++++.|+.|++|++++++.+..+. .|.
T Consensus       109 ~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~  185 (317)
T d1vyhc1         109 IMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHR  185 (317)
T ss_dssp             ECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCS
T ss_pred             ccCCC--ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe-cCC
Confidence            99999  799999999999999999999999999999999999999999999999999999999999999999988 899


Q ss_pred             CCeeEEEEecCCC-------------------CeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          168 EDVTQVHFVPNNQ-------------------NKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       168 ~~v~~~~~~~~~~-------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      ..+.++.|+|++.                   ..+++++.|+.|++||++++    ..+..+..|...|.+++++ +++.
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~~~~~-~~~~  260 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFH-SGGK  260 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEC-SSSS
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC----cEEEEEeCCCCCEEEEEEC-CCCC
Confidence            9999999987642                   36899999999999999954    5677788899999999999 7788


Q ss_pred             EEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          229 HLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       229 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      +|++++.||.|++||+.+++++..+.+            |...|++++|+|+++  +|++|+.||.|+|||
T Consensus       261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~------------h~~~V~~~~~s~~~~--~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         261 FILSCADDKTLRVWDYKNKRCMKTLNA------------HEHFVTSLDFHKTAP--YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEEC------------CSSCEEEEEECSSSS--CEEEEETTSEEEEEC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEcC------------CCCCEEEEEEcCCCC--EEEEEeCCCeEEEeC
Confidence            999999999999999999999999987            779999999999999  889999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=267.16  Aligned_cols=288  Identities=20%  Similarity=0.289  Sum_probs=228.8

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ++.+.++| .+.|.+ +++++|++||+|+.||+|+|||+.+++++..+.+|...|.+++|++    ++|++|+.|+.+++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~   81 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKV   81 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccccc
Confidence            35567888 777755 3666789999999999999999999999999999999999999985    38999999999999


Q ss_pred             EEccCCeEEEEEEcCCCCeEE--------------------------------------EEEeCCCCeEEEeecCCeEEE
Q 016457          109 WDTRSFHEVWSVTAGSQEIFC--------------------------------------FSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~--------------------------------------~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      |+............+...+..                                      ....+....+++++.|+.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  161 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEE
Confidence            998765443333222211111                                      122234556778888999999


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEE
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHL  230 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (389)
                      ||.+..+.+..+. +|...+..+.+  ++ ..+++++.||.|++||++.+    ..+.....|...+.+++++ +  ++|
T Consensus       162 ~d~~~~~~~~~~~-~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~-~--~~l  230 (342)
T d2ovrb2         162 WDPETETCLHTLQ-GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELK-D--NIL  230 (342)
T ss_dssp             EEGGGTEEEEEEC-CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEE-T--TEE
T ss_pred             eecccceeeEEEc-CcccccccccC--CC-CEEEEEeCCCeEEEeecccc----eeeeEecccccceeEEecC-C--CEE
Confidence            9999888888887 77766665555  55 49999999999999999854    5567777888889888886 3  489


Q ss_pred             EEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCC
Q 016457          231 WCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGP  310 (389)
Q Consensus       231 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~  310 (389)
                      ++++.|+.|++||+...+....+....         .|...+.++.+++  +  ++++|+.||.|++||+.+++.     
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~--~~~s~s~Dg~i~iwd~~tg~~-----  292 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPN---------KHQSAVTCLQFNK--N--FVITSSDDGTVKLWDLKTGEF-----  292 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTT---------SCSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCE-----
T ss_pred             EEEcCCCEEEEEecccccccccccccc---------eeeeceeecccCC--C--eeEEEcCCCEEEEEECCCCCE-----
Confidence            999999999999999988887776532         2566777777765  4  789999999999999999876     


Q ss_pred             CeEEEe----cccceeeeeccCCCcccCCCCCCCceeEEEecCCCe----EEEEeccCC
Q 016457          311 PEAVLV----GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGR----LCCWLSDDS  361 (389)
Q Consensus       311 ~~~~~~----~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~----v~iW~~~~~  361 (389)
                       +..+.    .+|...|+++         +|+|++.+|++|+.||+    |++||++..
T Consensus       293 -i~~~~~~~~~~~~~~v~~v---------~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         293 -IRNLVTLESGGSGGVVWRI---------RASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             -EEEEEECTTGGGTCEEEEE---------EECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             -EEEEecccCCCCCCCEEEE---------EECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence             55553    3678899999         99999999999999985    999999853

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-37  Score=273.51  Aligned_cols=269  Identities=16%  Similarity=0.214  Sum_probs=222.7

Q ss_pred             CccccCCCCeEEEEecCc--eeeeee------------------c-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCce
Q 016457           13 KSQSCDNVNSIKRFGLKN--SIQTNF------------------G-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQ   71 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~~--~~~~~~------------------~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~   71 (389)
                      ..++++ |+.|++|++.+  .+..+.                  . ...|++++|+|++++|++|+.||.|++||...++
T Consensus        76 ~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~  154 (388)
T d1erja_          76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK  154 (388)
T ss_dssp             EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccc
Confidence            566765 89999999853  332221                  1 5569999999999999999999999999999999


Q ss_pred             eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC-CCCeEEEeecCCeEEE
Q 016457           72 YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG-STDYLLAAGCGSQIQF  150 (389)
Q Consensus        72 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  150 (389)
                      .+..+.+|...|.+++|++++  ..+++++.++.+++||..+.........+. ...++.+.+ ++..+++++.|+.|++
T Consensus       155 ~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         155 IVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             EEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccc--ccccccccceeeeeeecccccccccccccc-ccccccccCCCCCeEEEEcCCCeEEE
Confidence            999999999999999999998  799999999999999999998888777664 455555554 5667777888999999


Q ss_pred             EECcCCceeeeee------ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC--------CccceeeeccCCc
Q 016457          151 WDWRNKKQVACLE------ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND--------DDLLESVINVGTS  216 (389)
Q Consensus       151 wd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~  216 (389)
                      ||++++..+..+.      .+|...|++++|+|++. +|++++.||.|++||+++....        .........|...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  310 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccce
Confidence            9999887766553      25788999999999995 9999999999999999855321        1233445567889


Q ss_pred             eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec------ccCCCCeEEEEEec
Q 016457          217 VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH------YPGEGENLWVIGGT  290 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~l~~g~  290 (389)
                      |.+++|+ +++++|++++.||.|++||+.+++++..+.+            |...|.+++      |+|+++  +|++|+
T Consensus       311 v~~~~~s-~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~------------H~~~V~~~~~~~~~~~spd~~--~l~s~s  375 (388)
T d1erja_         311 VLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQG------------HRNSVISVAVANGSSLGPEYN--VFATGS  375 (388)
T ss_dssp             EEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEEEEEEC------------CSSCEEEEEECSSCTTCTTCE--EEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEeCCCEEEEEECCCCcEEEEEeC------------CCCCEEEEEEecCcccCCCCC--EEEEEe
Confidence            9999999 6788999999999999999999999999987            667787764      677887  899999


Q ss_pred             CCceEEEEEec
Q 016457          291 GAGTVGYFPVN  301 (389)
Q Consensus       291 ~dg~i~i~~~~  301 (389)
                      .||.|+||+++
T Consensus       376 ~Dg~I~iW~~~  386 (388)
T d1erja_         376 GDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-37  Score=264.17  Aligned_cols=300  Identities=14%  Similarity=0.170  Sum_probs=237.1

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC--CCCcEEEEE
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG--HSSTVNQIS   87 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~   87 (389)
                      ..++++.|++|++||+.  +.+.++.+ .+.|++++|+|++ +|++|+.|+.|++|+....+.......  +........
T Consensus        25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  103 (355)
T d1nexb2          25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV  103 (355)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccccccccccccc
Confidence            57899999999999985  57788887 8999999999865 899999999999999998877665543  334456667


Q ss_pred             EeCCCCCCEEEEEecCCeEEEEEccCCeEEEE-----------------------EEcCCCCeEEEEEeCCCCeEEEeec
Q 016457           88 FSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS-----------------------VTAGSQEIFCFSFGGSTDYLLAAGC  144 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~l~~~~~  144 (389)
                      +.+++  .++++++.|+.|++||+.+......                       ...|...+..  +.+++..++++..
T Consensus       104 ~~~~~--~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~  179 (355)
T d1nexb2         104 EYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSY  179 (355)
T ss_dssp             EETTE--EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEET
T ss_pred             ccccc--ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecc
Confidence            77777  7999999999999999987644322                       2222333333  3346788888999


Q ss_pred             CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec
Q 016457          145 GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG  224 (389)
Q Consensus       145 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (389)
                      |+.|++||+++++.+.... ++...+.++.++|++. .+++++.|+.|++||++++    ..+..+..|...|.+++++ 
T Consensus       180 d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~~-  252 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLS-  252 (355)
T ss_dssp             TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTC----CEEEEECCCSSCCCEEEEC-
T ss_pred             cceeeeeecccccceeeee-ccccccccccccccce-eeecccccceEEeeecccc----ccccccccccccccccccc-
Confidence            9999999999999888887 7888999999999995 9999999999999999954    5567778899999999986 


Q ss_pred             CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeec-ccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          225 ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCH-YPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                        +++|++++.||.|++||+.++......              |...+..+. +++++.  +|++| .||.|++||++++
T Consensus       253 --~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~l~~g-~d~~i~vwd~~tg  313 (355)
T d1nexb2         253 --DKFLVSAAADGSIRGWDANDYSRKFSY--------------HHTNLSAITTFYVSDN--ILVSG-SENQFNIYNLRSG  313 (355)
T ss_dssp             --SSEEEEECTTSEEEEEETTTCCEEEEE--------------ECTTCCCCCEEEECSS--EEEEE-ETTEEEEEETTTC
T ss_pred             --cceeeeeecccccccccccccceeccc--------------ccCCceEEEEEcCCCC--EEEEE-eCCEEEEEECCCC
Confidence              358999999999999999887655443              334455554 566665  66665 5899999999998


Q ss_pred             CccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEecc
Q 016457          304 GAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSD  359 (389)
Q Consensus       304 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~  359 (389)
                      +.      +.....+|...|.++         +|+|+ .++++++.||.++||.++
T Consensus       314 ~~------~~~~~~~~~~~V~~v---------~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         314 KL------VHANILKDADQIWSV---------NFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             CB------CCSCTTTTCSEEEEE---------EEETT-EEEEEEESSSCEEEEEEE
T ss_pred             CE------EEEEecCCCCCEEEE---------EEcCC-eEEEEEECCCcEEEEEEe
Confidence            76      443335899999999         99987 468889999998887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-37  Score=268.47  Aligned_cols=259  Identities=10%  Similarity=0.043  Sum_probs=207.2

Q ss_pred             CCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCC
Q 016457           79 HSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNK  156 (389)
Q Consensus        79 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  156 (389)
                      +.++|+|++|+|++  ++|++|+.||.|+|||+.+++  .+..+++|..+|.+++|+|++++|++++.|+.|++||++++
T Consensus         6 ~~~pIt~~~~s~dg--~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDR--TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTS--SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCCeEEEEECCCC--CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            34789999999999  799999999999999998775  66778999999999999999999999999999999999876


Q ss_pred             cee--eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          157 KQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       157 ~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      ...  ..+. .|...|++++|+|+++ .|++++.|+.+++|++...............|...|.+++|+ |++.+|++++
T Consensus        84 ~~~~~~~~~-~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s  160 (371)
T d1k8kc_          84 TWKPTLVIL-RINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH-PNSVLLAAGS  160 (371)
T ss_dssp             EEEEEEECC-CCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-TTSSEEEEEE
T ss_pred             ccccccccc-cccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccc-ccccceeccc
Confidence            544  3444 6888999999999995 999999999999999885432222233344578899999999 7889999999


Q ss_pred             cCCcEEEEEcCCCceeEEeeccccccc------CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcccc
Q 016457          235 HIETLSIWDWKDGQNVASFENARSLAS------DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATI  308 (389)
Q Consensus       235 ~d~~i~i~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~  308 (389)
                      .|+.|++|+..................      ..-...|...+.+++|+|+++  +|++++.||.|++||+.+++.   
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~s~~~d~~i~iwd~~~~~~---  235 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--RVAWVSHDSTVCLADADKKMA---  235 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--EEEEEETTTEEEEEEGGGTTE---
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc--cccccccCCcceEEeeecccc---
Confidence            999999999875432111100000000      000112778899999999999  889999999999999998776   


Q ss_pred             CCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          309 GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       309 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                         +..+. +|..+|.++         +|+|++++|++|. |+.+++|..+..
T Consensus       236 ---~~~~~-~~~~~v~s~---------~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         236 ---VATLA-SETLPLLAV---------TFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             ---EEEEE-CSSCCEEEE---------EEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             ---eeeee-cccccceee---------eecCCCCEEEEEc-CCceEEEEeeCC
Confidence               66776 899999999         9999999988766 788888776643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-36  Score=259.94  Aligned_cols=283  Identities=13%  Similarity=0.186  Sum_probs=222.4

Q ss_pred             eeeeec-Ccc-eEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEE
Q 016457           32 IQTNFG-DDY-VFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAW  109 (389)
Q Consensus        32 ~~~~~~-~~~-v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw  109 (389)
                      ..+++| .+. |+|++|  ++++||+|+.||+|+|||+.+++++..+.+|.+.|.+++|+|++   +|++|+.|++|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---EEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---EEEEEecccccccc
Confidence            356777 555 466665  57899999999999999999999999999999999999999865   89999999999999


Q ss_pred             EccCCeEEEEEEcCCC--CeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee----------------------ec
Q 016457          110 DTRSFHEVWSVTAGSQ--EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----------------------ES  165 (389)
Q Consensus       110 d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------------~~  165 (389)
                      ++...+..........  ......+.+++..+++++.|+.|++||+++........                      ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9999888777665533  34556677778888899999999999998764432211                      12


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      |...+.  .+.+++ +.++++..|+.|++||++++    ..+.....+...+..+.++ +++..+++++.|+.|++||+.
T Consensus       160 ~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         160 HMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             CSSCEE--EEEEET-TEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT
T ss_pred             cccccc--cccccc-ceeeeecccceeeeeecccc----cceeeeecccccccccccc-ccceeeecccccceEEeeecc
Confidence            223333  344556 49999999999999999854    4455666778888999999 778899999999999999999


Q ss_pred             CCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeee
Q 016457          246 DGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRS  325 (389)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~  325 (389)
                      ++..+..+.+            |...|.++.+++  +  +|++|+.||.|++||+.+...        .+. .|...+..
T Consensus       232 ~~~~~~~~~~------------h~~~v~~~~~~~--~--~l~~~~~dg~i~iwd~~~~~~--------~~~-~~~~~~~~  286 (355)
T d1nexb2         232 NGELMYTLQG------------HTALVGLLRLSD--K--FLVSAAADGSIRGWDANDYSR--------KFS-YHHTNLSA  286 (355)
T ss_dssp             TCCEEEEECC------------CSSCCCEEEECS--S--EEEEECTTSEEEEEETTTCCE--------EEE-EECTTCCC
T ss_pred             cccccccccc------------cccccccccccc--c--eeeeeecccccccccccccce--------ecc-cccCCceE
Confidence            9999988886            668899999875  4  889999999999999987643        333 56666666


Q ss_pred             ccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          326 VLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       326 ~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +.        .+++++.+|++|+ ||.|++||+..+
T Consensus       287 ~~--------~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         287 IT--------TFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             CC--------EEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             EE--------EEcCCCCEEEEEe-CCEEEEEECCCC
Confidence            52        4567777777665 899999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=247.46  Aligned_cols=273  Identities=16%  Similarity=0.229  Sum_probs=220.0

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|+|++|  ++++||+|+.||+|+|||+++++++..+.+|...|++++|  ++  ++|++|+.|+.|++|++..+...
T Consensus        15 ~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~--~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          15 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE--RVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--cc--ceeeccccccccccccccccccc
Confidence            678998765  7889999999999999999999999999999999999988  44  69999999999999999998887


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCcee---eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEE
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQV---ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICT  194 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i  194 (389)
                      .....+.....  .+.+....++++..++.+.+||.......   ..+. .|...+.++.+.+.   .+++++.|+.|++
T Consensus        89 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~s~d~~i~~  162 (293)
T d1p22a2          89 NTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---YIVSASGDRTIKV  162 (293)
T ss_dssp             EEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEETT---EEEEEETTSEEEE
T ss_pred             ccccccccccc--cccccccceeecccccceeEeecccccccccccccc-ccccccccceeccc---ccccccCCCceee
Confidence            77766544433  34446788999999999999999876543   3333 67888888887763   7889999999999


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceee
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ||+++.    ..+..+..+...+..+.+.   +..+++++.|+.|++||+++.+.+..+..            +...+..
T Consensus       163 ~d~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~v~~  223 (293)
T d1p22a2         163 WNTSTC----EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEG------------HEELVRC  223 (293)
T ss_dssp             EETTTC----CEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECC------------CSSCEEE
T ss_pred             ecCCCC----cEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecc------------cceeeee
Confidence            999954    4566677777888888776   35899999999999999999998888776            4455654


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCccc---cCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCC
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT---IGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDG  351 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg  351 (389)
                        +++++.  +|++|+.||.|++||+.......   ...++..+. +|...|.++         +|  ++.+|+|||.||
T Consensus       224 --~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v---------~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         224 --IRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRL---------QF--DEFQIVSSSHDD  287 (293)
T ss_dssp             --EECCSS--EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCE---------EE--CSSCEEECCSSS
T ss_pred             --ccccce--EEEEEcCCCEEEEEECCCCccccccCCceeeEEec-CCCCCEEEE---------EE--cCCEEEEEecCC
Confidence              445566  88999999999999987654311   112345554 899999998         77  456899999999


Q ss_pred             eEEEEe
Q 016457          352 RLCCWL  357 (389)
Q Consensus       352 ~v~iW~  357 (389)
                      +|++||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-35  Score=254.55  Aligned_cols=266  Identities=17%  Similarity=0.223  Sum_probs=232.5

Q ss_pred             CCCCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCc----eeeeeecCCCCc
Q 016457           10 SQPKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTG----QYSGECKGHSST   82 (389)
Q Consensus        10 ~~~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~   82 (389)
                      +....++++.||+|++||+.  +.+..+.. ...|.+++|+|++.++++|+.|+.+++|+....    +....+.+|...
T Consensus        66 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  145 (340)
T d1tbga_          66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY  145 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC
T ss_pred             CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccc
Confidence            34468899999999999985  46666776 889999999999999999999999999997654    344566778887


Q ss_pred             EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeee
Q 016457           83 VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      ........+.   .+.....|.....+.............+...+....+.+....+++++.|+.|++||+++++++..+
T Consensus       146 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~  222 (340)
T d1tbga_         146 LSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             EEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccc---ccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEE
Confidence            7777776554   8888999999999999988888888888899999999999999999999999999999999999999


Q ss_pred             eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee--eeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          163 EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES--VINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      . +|...|++++|+|++. +|++|+.|+.|++||++..    .....  ...+...+.+++|+ +++.+|++++.||.|+
T Consensus       223 ~-~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~dg~i~  295 (340)
T d1tbga_         223 T-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             C-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred             e-CCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccc----ccccccccccccCceEEEEEC-CCCCEEEEEECCCEEE
Confidence            8 8999999999999995 9999999999999999843    22222  23456779999999 7889999999999999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      +||+.+++++..+.+            |...|.+++|+|+++  +|++|+.||.|+|||
T Consensus       296 iwd~~~~~~~~~~~~------------H~~~V~~l~~s~d~~--~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         296 VWDALKADRAGVLAG------------HDNRVSCLGVTDDGM--AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTTCCEEEEECC------------CSSCEEEEEECTTSS--CEEEEETTSCEEEEC
T ss_pred             EEECCCCcEEEEEcC------------CCCCEEEEEEeCCCC--EEEEEccCCEEEEeC
Confidence            999999999999987            779999999999999  889999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.1e-36  Score=253.53  Aligned_cols=252  Identities=12%  Similarity=0.116  Sum_probs=204.5

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeE
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQI  148 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i  148 (389)
                      |+..+.+.||.+.|++++|+|++  ++|+||+.||+|++||+.+++.+..+. .|...|++++|+|++ .+++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg--~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeE
Confidence            56788899999999999999999  799999999999999999999888774 678899999999776 57788889999


Q ss_pred             EEEECcCCcee--eeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCC
Q 016457          149 QFWDWRNKKQV--ACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGET  226 (389)
Q Consensus       149 ~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (389)
                      ++|+.......  ......+...+.+++|+|++. +++++ .++.+.+|+...        .........+..++|+ ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~-~~~~i~~~~~~~--------~~~~~~~~~~~~~~~s-~~  147 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAA-CYKHIAIYSHGK--------LTEVPISYNSSCVALS-ND  147 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEE-ESSEEEEEETTE--------EEEEECSSCEEEEEEC-TT
T ss_pred             EEeccCCccccccccccccccccccccccccccc-ccccc-cccccccccccc--------cccccccccccccccc-cc
Confidence            99998754321  122225778899999999985 55555 467899999761        1122344567889999 78


Q ss_pred             CcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          227 NKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       227 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                      +++|++++.|+.|++||+++++....... .          |...|.+++|+|+++  +|++++.||.|++||+.++...
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~-~----------~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTI-V----------HPAEITSVAFSNNGA--FLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEE-E----------CSSCEEEEEECTTSS--EEEEEETTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccc-c----------ccccccccccccccc--cccccccccccccccccccccc
Confidence            88999999999999999987765443221 1          678999999999998  8899999999999999886541


Q ss_pred             ccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          307 TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       307 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .   ....+ .+|...|+++         +|+|++++|++|+.||.|++|++...
T Consensus       215 ~---~~~~~-~~h~~~v~~l---------~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         215 A---HTNSW-TFHTAKVACV---------SWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             S---CCCCC-CCCSSCEEEE---------EECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             c---ccccc-cccccccccc---------cccccccceEEEcCCCEEEEEECCCC
Confidence            1   12233 3789999999         99999999999999999999999865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=252.59  Aligned_cols=262  Identities=15%  Similarity=0.115  Sum_probs=205.6

Q ss_pred             eEEEEecC----ceeeeeec--CcceEEEeecC--CCCeEEEEecCCeEEEEeCCCceee--------eeecCCCCcEEE
Q 016457           22 SIKRFGLK----NSIQTNFG--DDYVFEIVPKN--DWSLMAVSLSTNVVKLYSPVTGQYS--------GECKGHSSTVNQ   85 (389)
Q Consensus        22 ~i~~w~~~----~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~--------~~~~~~~~~v~~   85 (389)
                      .|+.|+..    ..+..+.+  ...|++++|+|  ++.+||+|+.||+|+|||+..++..        ..+..|.++|.+
T Consensus        41 ~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~  120 (325)
T d1pgua1          41 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD  120 (325)
T ss_dssp             EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEE
T ss_pred             EEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEE
Confidence            35666643    23445555  56899999998  5679999999999999998765433        234568899999


Q ss_pred             EEEeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCe-EEEeecCCeEEEEECcCCceeeee
Q 016457           86 ISFSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDY-LLAAGCGSQIQFWDWRNKKQVACL  162 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~  162 (389)
                      ++|++++  .+|++++  .++.+++|+..+++.+..+.+|...|++++|+|+++. +++++.|+.|++||++..+....+
T Consensus       121 v~~s~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~  198 (325)
T d1pgua1         121 ISWDFEG--RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD  198 (325)
T ss_dssp             EEECTTS--SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred             EEECCCC--CccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceec
Confidence            9999999  6777765  4678999999999999999999999999999998876 556777999999999887765554


Q ss_pred             e--ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec--CCCcEEEEEecCCc
Q 016457          163 E--ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG--ETNKHLWCLTHIET  238 (389)
Q Consensus       163 ~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~d~~  238 (389)
                      .  ..|...|++++|+|++..+|++++.|+.|++||++++    ..+..+..|..++..+.|+.  +++.+|++++.|+.
T Consensus       199 ~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred             ccccCCCCccEEeeeccccceeccccccccceeeeeeccc----cccccccccccccccceeeeeccCCCEEEEEeCCCe
Confidence            3  2567889999999986569999999999999999854    45566667777776655542  56789999999999


Q ss_pred             EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          239 LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       239 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      |+|||+++++++..+..+.          +...+..+++.+.++. +|++|+.||.|++||+
T Consensus       275 i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         275 IRVWDVTTSKCVQKWTLDK----------QQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTTTEEEEEEECCT----------TCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEEEECCCCCEEEEEEecC----------CcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            9999999999998887644          3333444444433222 6789999999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=249.65  Aligned_cols=273  Identities=9%  Similarity=0.011  Sum_probs=213.6

Q ss_pred             ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           30 NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        30 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      ++++++.+ ..+|++++|+|    |++|+.||+|++||+.++.     .+|...|.+++++++.   .+++++.|+++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~---~~~s~s~D~~v~~   71 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ---EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT---CCEEEETTTEEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC---eEEEEeecccccc
Confidence            56788888 99999999987    9999999999999987643     5799999999998765   7899999999999


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeC
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASV  188 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  188 (389)
                      |++...+       ....+.++++++ ++.+++.+.++.+.+|+..+++.+..+.  +...+  .++++++. .+++++.
T Consensus        72 w~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~-~~~v~~~  138 (287)
T d1pgua2          72 NGITKHE-------FGSQPKVASANN-DGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQN-YVAVGLE  138 (287)
T ss_dssp             TTEEEEE-------CSSCEEEEEECS-SSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSS-EEEEEET
T ss_pred             ccccccc-------cccceeeeeecc-CCceEEEeecccceeeeccceeeeeecc--cccee--eeeeccCc-ceeeecc
Confidence            9976422       245677888885 4566666677889999999998888876  34444  45666664 7777776


Q ss_pred             C-CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          189 D-GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       189 d-~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      + +.+++|++....   ........+...+.+++|+ +++.+|++++.||.|++||+.+++.......           .
T Consensus       139 ~~~~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----------~  203 (287)
T d1pgua2         139 EGNTIQVFKLSDLE---VSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWA-----------F  203 (287)
T ss_dssp             TTSCEEEEETTEEE---EEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSC-----------C
T ss_pred             ccceeeeeeccccc---eeeeeeeccCCceeEEEec-cCccccccccccccccceeeccccccccccc-----------c
Confidence            6 479999987321   1122223466789999999 7889999999999999999998876544221           1


Q ss_pred             CCCceeeecccCCCC--------eEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCC
Q 016457          268 DVDYFVDCHYPGEGE--------NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQS  339 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~--------~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~  339 (389)
                      |...|.+++|+|.+.        ..++++|+.|+.|++|++.....      ......+|...|+++         +|+|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~------~~~~~~~h~~~V~~v---------~~~~  268 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK------IIKALNAHKDGVNNL---------LWET  268 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC------CEEETTSSTTCEEEE---------EEEE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe------EEEEeCCCCCCeEEE---------EECC
Confidence            778899999987542        12789999999999999976432      244445999999999         9999


Q ss_pred             CceeEEEecCCCeEEEEec
Q 016457          340 HGIFGWTGGEDGRLCCWLS  358 (389)
Q Consensus       340 ~~~~l~s~~~dg~v~iW~~  358 (389)
                      ++. |+|+|.||.|++|++
T Consensus       269 ~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             TTE-EEEEETTSCEEEEEE
T ss_pred             CCE-EEEEECCCeEEEEEE
Confidence            875 788999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-35  Score=251.65  Aligned_cols=305  Identities=11%  Similarity=0.025  Sum_probs=224.0

Q ss_pred             eeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee---eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           32 IQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS---GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        32 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      ++..++ .+.|++|+|+|++++||+|+.||+|+|||++++...   ....+|..+|.+++|+|++. .+|++|+.||.|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-CEEEEccccccee
Confidence            344445 889999999999999999999999999998765432   22336999999999998753 6899999999999


Q ss_pred             EEEccCCeEEEEEEcCC-CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee---c--ccCCeeEEEEecCCCC
Q 016457          108 AWDTRSFHEVWSVTAGS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE---S--HVEDVTQVHFVPNNQN  181 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~  181 (389)
                      +|++...........+. .......+.+....+++++.++.+++||++.+........   .  .......+.+.+.+. 
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-
Confidence            99999887776666553 3344555566788899999999999999986554333220   1  223445667777774 


Q ss_pred             eEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee------EEeec
Q 016457          182 KVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV------ASFEN  255 (389)
Q Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~  255 (389)
                      .+++++.|+.|++||++..... ............+....+.+.++..+++++.||.+.+|+.......      ..+..
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             ceeeecCCCcEEEEecccCccc-ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            9999999999999999865322 2222333445566777777677889999999999999998654322      11111


Q ss_pred             ccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCC
Q 016457          256 ARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGR  335 (389)
Q Consensus       256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  335 (389)
                      .+..   .....|...+.+++|+|+++  +|++|+.||.|++||+.+++.      +..+...|..  ..+         
T Consensus       241 ~~~~---~~~~~~~~~v~~l~~sp~~~--~lasg~~Dg~v~vWD~~~~~~------l~~~~~~~~~--~~~---------  298 (342)
T d1yfqa_         241 HRLN---LKDTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWNLQTRKK------IKNFAKFNED--SVV---------  298 (342)
T ss_dssp             CCCC---TTCCSSCCCEEEEEECTTTC--CEEEEETTSCEEEEETTTTEE------EEECCCCSSS--EEE---------
T ss_pred             eeec---cCCCcccccceeEEecCCcc--EEEEECCCCEEEEEECCCCcE------EEEecCCCCC--EEE---------
Confidence            1100   01123667899999999999  889999999999999998765      5555433433  345         


Q ss_pred             CCCCCceeEEEecCCCeEEEEeccCC
Q 016457          336 PAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       336 ~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      +|+|++++|++|+.|+.+++|.....
T Consensus       299 ~~s~~~~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         299 KIACSDNILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             EEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred             EEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence            67888999999998999888876543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=244.75  Aligned_cols=295  Identities=13%  Similarity=0.129  Sum_probs=203.4

Q ss_pred             eec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCcee------eeeecCCCCcEEEEEEe---C-CC-CCCEEEEEec
Q 016457           35 NFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQY------SGECKGHSSTVNQISFS---G-PS-TPHVLHSCSS  102 (389)
Q Consensus        35 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~i~~~---~-~~-~~~~l~s~~~  102 (389)
                      .++ .+.|+++++++  +++++++.|++|+|||..+.+.      ......|...+..+...   + ++ ...++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            344 88999999875  5899999999999999765432      11222344443333221   1 11 0136789999


Q ss_pred             CCeEEEEEccCCeEEE-----EEE-----cCCCCeEEEEEeCCC-----CeEEEeecCCeEEEEECcCCce---------
Q 016457          103 DGTIRAWDTRSFHEVW-----SVT-----AGSQEIFCFSFGGST-----DYLLAAGCGSQIQFWDWRNKKQ---------  158 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~-----~~~-----~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~---------  158 (389)
                      ||.|++|++.......     ...     .+...+..++|.+..     ..+++++.||.+++||+.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            9999999986432211     111     124567788887653     4677888899999999853210         


Q ss_pred             --e----eee--eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC--CccceeeeccCCceeeEEEecCCCc
Q 016457          159 --V----ACL--EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND--DDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       159 --~----~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                        .    ...  ...+...+++++|+|++  +|++|+.|+.|++||+.++...  ......+.+|..+|.+++|+ |+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~  244 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGS  244 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTT
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc-cccc
Confidence              0    000  01345668999999986  8999999999999999865321  12223455688999999999 7889


Q ss_pred             EEEEEecCCc---EEEEEcCCCceeEEeeccccccc-CCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCC
Q 016457          229 HLWCLTHIET---LSIWDWKDGQNVASFENARSLAS-DSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGG  304 (389)
Q Consensus       229 ~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~  304 (389)
                      +|++++.|++   |++||+.+++.+..+........ .....+|...|++++|+|+++  +|++|+.|++|++||+.+++
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~--~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC--eeEEECCCCEEEEEECCCCC
Confidence            9999999874   89999999999888764322111 112235889999999999999  89999999999999999987


Q ss_pred             ccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEec
Q 016457          305 AATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG  348 (389)
Q Consensus       305 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~  348 (389)
                      .      +..+. +|...|....     ..++|++++..+++++
T Consensus       323 ~------~~~l~-gH~~~v~~~~-----~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         323 R------ITTLN-MHCDDIEIEE-----DILAVDEHGDSLAEPG  354 (393)
T ss_dssp             E------EEEEE-CCGGGCSSGG-----GCCCBCTTSCBCSSCC
T ss_pred             E------EEEEC-CcCCcccCCc-----cEEEECCCCCEEEEcc
Confidence            7      77776 9998886531     0115666666555443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-31  Score=230.47  Aligned_cols=264  Identities=16%  Similarity=0.232  Sum_probs=208.0

Q ss_pred             CccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEE----
Q 016457           13 KSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQ----   85 (389)
Q Consensus        13 ~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~----   85 (389)
                      ..+|++.|++|++||+.  +++.++.+ ...|.+++|+|+  +|++|+.|+.+++|+............+...+..    
T Consensus        29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH  106 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecc
Confidence            57899999999999985  57778887 889999999975  8999999999999998765443332222211111    


Q ss_pred             ----------------------------------EEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEE
Q 016457           86 ----------------------------------ISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFS  131 (389)
Q Consensus        86 ----------------------------------i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  131 (389)
                                                        ..+.+..  ..+++++.|+.|++||....+.+..+..|...+..+.
T Consensus       107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  184 (342)
T d2ovrb2         107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ  184 (342)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             cccccccccceeEEEeecccccceeeeecccccceeecccc--ceeeeecCCCeEEEeecccceeeEEEcCccccccccc
Confidence                                              1122223  4788899999999999999999999998877777666


Q ss_pred             EeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee
Q 016457          132 FGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       132 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      +  ++..+++++.||.|++||++.++.+..+. .|...+.++.+++   ++|++++.|+.|++||+...    .....+.
T Consensus       185 ~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~----~~~~~~~  254 (342)
T d2ovrb2         185 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG----QCLQTLQ  254 (342)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC----CEEEEEC
T ss_pred             C--CCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecCC---CEEEEEcCCCEEEEEecccc----ccccccc
Confidence            6  67899999999999999999999999888 8999999988876   39999999999999999854    2233333


Q ss_pred             ---ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          212 ---NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       212 ---~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                         .|...+.++.++   ++++++++.||.|++||+++++.++.+......       +|...|.+++|+|++.  +|++
T Consensus       255 ~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~-------~~~~~v~~v~~s~~~~--~la~  322 (342)
T d2ovrb2         255 GPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG-------GSGGVVWRIRASNTKL--VCAV  322 (342)
T ss_dssp             STTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG-------GGTCEEEEEEECSSEE--EEEE
T ss_pred             ccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCC-------CCCCCEEEEEECCCCC--EEEE
Confidence               344566666664   459999999999999999999998887642211       2668899999999887  8999


Q ss_pred             ecCCce----EEEEEecc
Q 016457          289 GTGAGT----VGYFPVNY  302 (389)
Q Consensus       289 g~~dg~----i~i~~~~~  302 (389)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999985    99999863

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=7.1e-33  Score=240.07  Aligned_cols=309  Identities=9%  Similarity=-0.030  Sum_probs=227.8

Q ss_pred             CCCCeEEEEecCc-eeeeeecCcceEEEeecCCCCeEEEEecCC--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCC
Q 016457           18 DNVNSIKRFGLKN-SIQTNFGDDYVFEIVPKNDWSLMAVSLSTN--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTP   94 (389)
Q Consensus        18 ~~~~~i~~w~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   94 (389)
                      ...+.|.+|+... .+..+.+...|.+++|+|||+.|++++.+.  .|++||.++++.. .+..|...|.+++|+|++  
T Consensus        21 ~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg--   97 (360)
T d1k32a3          21 VSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG--   97 (360)
T ss_dssp             EETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTS--
T ss_pred             EECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccc--
Confidence            3568999999863 344444478899999999999998877654  7999999877654 566799999999999999  


Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec----------CCeEEEEECcCCceeeeeee
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC----------GSQIQFWDWRNKKQVACLEE  164 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~  164 (389)
                      ++|++++.++.+++|++.+++....+..+...+.+++|+|++..|+.+..          ++.+++||+.+++...... 
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-  176 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-  176 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-
T ss_pred             cccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-
Confidence            79999999999999999999999999999999999999999999886543          4579999999887665554 


Q ss_pred             cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCC---CccceeeeccCCceeeEEEecCCCcEEEEEecCC----
Q 016457          165 SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIND---DDLLESVINVGTSVGKVGFFGETNKHLWCLTHIE----  237 (389)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----  237 (389)
                       +...+..++|+|+|+ .|++++.++.+.+||.......   .........+...+..+.++ +++..+.++..+.    
T Consensus       177 -~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         177 -ENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             -SSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC-CGGGSCCCCCCCCTTGG
T ss_pred             -cccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceEC-CCcCcccccceeecccc
Confidence             677889999999996 9999999999999998743211   11122223344445555565 4444444443321    


Q ss_pred             -cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCC-eEEEEEecCCceEEEEEeccCCccccCCCeEEE
Q 016457          238 -TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGE-NLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVL  315 (389)
Q Consensus       238 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~  315 (389)
                       .+..++...+... .+..            +...+..+.+.+.+. ..++++++.++.|++||+.+++.          
T Consensus       254 ~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------  310 (360)
T d1k32a3         254 KRSSPINVDPGDYR-MIIP------------LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----------  310 (360)
T ss_dssp             GGCEECSCCCBCEE-EEEE------------CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----------
T ss_pred             cceeecccCcCcee-Eeee------------cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----------
Confidence             2334444443322 2222            223344444444332 11568888999999999988654          


Q ss_pred             ecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCcccch
Q 016457          316 VGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSSEINR  366 (389)
Q Consensus       316 ~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~~~~~  366 (389)
                       ..|.+.|.++         +|||||++|++++.||.|++|+++.+.++..
T Consensus       311 -~~~~~~v~~~---------~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         311 -TEVKNNLTDL---------RLSADRKTVMVRKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             -EEEEEEEEEE---------EECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred             -EEecCCcCEE---------EECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence             2456678999         9999999999999999999999998755443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-30  Score=228.61  Aligned_cols=264  Identities=14%  Similarity=0.211  Sum_probs=186.2

Q ss_pred             eeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe------EEEEEEcCCCCeEEEEE------eCCC-CeEE
Q 016457           74 GECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH------EVWSVTAGSQEIFCFSF------GGST-DYLL  140 (389)
Q Consensus        74 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~------~~~~-~~l~  140 (389)
                      ...++|...|.++++++    ++++|++.|++|+|||..+..      .......|...+..+..      +... ..++
T Consensus         8 ~~~~~H~~~I~~v~~~~----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            34578999999999863    489999999999999976542      22333344444333221      1111 2355


Q ss_pred             EeecCCeEEEEECcCCceeeeee---------ecccCCeeEEEEecCCC----CeEEEEeCCCcEEEEecCCCCCCC---
Q 016457          141 AAGCGSQIQFWDWRNKKQVACLE---------ESHVEDVTQVHFVPNNQ----NKVVSASVDGLICTFDTGGDINDD---  204 (389)
Q Consensus       141 ~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~---  204 (389)
                      +++.||.|++|++........+.         ..+...+..++|.++..    .++++++.||.+++|++.......   
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            66779999999987543322211         12445677888887642    378999999999999986332100   


Q ss_pred             ----c-------cceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCcee
Q 016457          205 ----D-------LLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFV  273 (389)
Q Consensus       205 ----~-------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (389)
                          .       .......+...+.+++|+ +++ +|++|+.|++|++||+.+++++..+.....+.      +|..+|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~------~h~~~V~  235 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI------NNSNSIR  235 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---------CCCCCEE
T ss_pred             eeeeccceecccceecccCCCCcEEEEEEC-CCC-EEEEEeCCCcEEEEeecccccccccccccccc------cccceEE
Confidence                0       011112334568899999 555 89999999999999999999888776543222      3789999


Q ss_pred             eecccCCCCeEEEEEecCCc---eEEEEEeccCCcccc-------CCCeEEEecccceeeeeccCCCcccCCCCCCCcee
Q 016457          274 DCHYPGEGENLWVIGGTGAG---TVGYFPVNYGGAATI-------GPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIF  343 (389)
Q Consensus       274 ~~~~~~~~~~~~l~~g~~dg---~i~i~~~~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~  343 (389)
                      +++|+|+|+  +|++|+.|+   .|++||+.+++....       ......+ .+|...|+++         +|+||+++
T Consensus       236 ~l~~spdg~--~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~-~gH~~~V~~l---------~fspd~~~  303 (393)
T d1sq9a_         236 SVKFSPQGS--LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE-FAHSSWVMSL---------SFNDSGET  303 (393)
T ss_dssp             EEEECSSTT--EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC-BSBSSCEEEE---------EECSSSSE
T ss_pred             Ecccccccc--eeeeecCCCCcceeeecccccceeeeeeccccccccceeee-ecccCceeee---------ccCCCCCe
Confidence            999999999  889998886   599999998765110       0111112 3899999999         99999999


Q ss_pred             EEEecCCCeEEEEeccCC
Q 016457          344 GWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       344 l~s~~~dg~v~iW~~~~~  361 (389)
                      |+|||.||+|++||++.+
T Consensus       304 l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EEEEETTSEEEEEETTTT
T ss_pred             eEEECCCCEEEEEECCCC
Confidence            999999999999999877

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.6e-30  Score=221.40  Aligned_cols=267  Identities=14%  Similarity=0.080  Sum_probs=189.0

Q ss_pred             eeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE---EEEEEcCCCCeEEEEEeCCCC-eEEEeecCC
Q 016457           71 QYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE---VWSVTAGSQEIFCFSFGGSTD-YLLAAGCGS  146 (389)
Q Consensus        71 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  146 (389)
                      +.++..++|.+.|++|+|+|++  ++|++|+.||+|+|||+.++..   +.....|..+|.+++|+|+++ .+++++.|+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CeEEcCCCCCCCEEEEEEeCCC--CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            4567778999999999999999  7999999999999999976543   233346899999999998765 566677799


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeecc--CCceeeEEEec
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINV--GTSVGKVGFFG  224 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~  224 (389)
                      .|++|++............+........+.++. ..+++++.++.+++||+++.............+  ........+. 
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD-  157 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE-
T ss_pred             ceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeecccccccccceeeeeeee-
Confidence            999999998877766662333444455555665 599999999999999998543222222222222  1223344555 


Q ss_pred             CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC-CCCeEEEEEecCCceEEEEEeccC
Q 016457          225 ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG-EGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       225 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      ..+..+++++.|+.|++||+.............         .+........+.+ ++.  .+++++.||.+.+|++...
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES---------GLKYQIRDVALLPKEQE--GYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEEC---------SCSSCEEEEEECSGGGC--EEEEEETTSEEEEEECCTT
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeec---------ccccceeeeEeecCCCC--EEEeecCCCeEEEEEecCC
Confidence            566789999999999999998765443322211         0223444444444 444  6889999999999998765


Q ss_pred             CccccCCCeEEE--------ecccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          304 GAATIGPPEAVL--------VGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       304 ~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      ...........+        ..+|...|+++         +|+|++.+|+||+.||.|++||++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l---------~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI---------EFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEE---------EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeE---------EecCCccEEEEECCCCEEEEEECCCC
Confidence            432111111111        12455667777         99999999999999999999999876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.8e-29  Score=210.34  Aligned_cols=253  Identities=17%  Similarity=0.205  Sum_probs=203.8

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEE
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISF   88 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~   88 (389)
                      ...++++.|++|++||+.  +++.++.+ .+.|++++|  ++++|++|+.|+.|++|++..+........+.....  .+
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~  101 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HL  101 (293)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cc
Confidence            467899999999999985  57888887 889999988  567999999999999999998887777665544433  33


Q ss_pred             eCCCCCCEEEEEecCCeEEEEEccCCe---EEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec
Q 016457           89 SGPSTPHVLHSCSSDGTIRAWDTRSFH---EVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES  165 (389)
Q Consensus        89 ~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  165 (389)
                      .+..  ..++++..++.+.+|+.....   ....+..|...+.++.+.  ...+++++.|+.|++||+++++.+..+. +
T Consensus       102 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~-~  176 (293)
T d1p22a2         102 RFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN-G  176 (293)
T ss_dssp             ECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             cccc--cceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEc-c
Confidence            3344  589999999999999988654   345566778888888875  5678888899999999999999999988 8


Q ss_pred             ccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          166 HVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       166 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      +...+..+.+++   ..+++++.|+.|++||+++.    ..+.....+...+..+.   .++.+|++++.||.|++||+.
T Consensus       177 ~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         177 HKRGIACLQYRD---RLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             CSSCEEEEEEET---TEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEE---CCSSEEEEEETTSCEEEEEHH
T ss_pred             cccccccccCCC---CeEEEecCCCEEEEEecccc----eeeeeecccceeeeecc---ccceEEEEEcCCCEEEEEECC
Confidence            888888888875   38999999999999999954    44555666666665443   556799999999999999975


Q ss_pred             CC---------ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          246 DG---------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       246 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      ..         ..+..+.+            |...|.+++|+  +.  +|++|+.||+|++||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~------------H~~~V~~v~~d--~~--~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         247 AALDPRAPAGTLCLRTLVE------------HSGRVFRLQFD--EF--QIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHTSTTSCTTTTEEEEECC------------CSSCCCCEEEC--SS--CEEECCSSSEEEEEC
T ss_pred             CCccccccCCceeeEEecC------------CCCCEEEEEEc--CC--EEEEEecCCEEEEeC
Confidence            32         34555655            77999999985  45  789999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.9e-30  Score=215.80  Aligned_cols=251  Identities=9%  Similarity=0.018  Sum_probs=198.9

Q ss_pred             ccccCCCCeEEEEecCceeeeeec-CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           14 SQSCDNVNSIKRFGLKNSIQTNFG-DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      .+|++.||+|++|+..+..   .+ ...|.++++++++ .+++++.|++|++|++...+       ....+..+.+.+++
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~---~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~   92 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMH---QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDG   92 (287)
T ss_dssp             TEEEETTSCEEETTTTEEE---CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSS
T ss_pred             EEEEeCCCeEEEEECCCCC---CCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeeccCC
Confidence            7899999999999987533   23 7789999999765 67889999999999976432       23457788898887


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC-CeEEEEECcCCceeeeeeecccCCee
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG-SQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                         .++..+.++.+.+|+..+++.+..+..+ ..+.  ++++++..+++++.+ +.|++|++...+....+...|...++
T Consensus        93 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~  166 (287)
T d1pgua2          93 ---FTAVLTNDDDLLILQSFTGDIIKSVRLN-SPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS  166 (287)
T ss_dssp             ---EEEEEETTSEEEEEETTTCCEEEEEECS-SCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred             ---ceEEEeecccceeeeccceeeeeecccc-ceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCcee
Confidence               4555566778999999999998888764 4444  455577888888875 57999999877766666546788999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEec---------CCCcEEEEEecCCcEEEE
Q 016457          172 QVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFG---------ETNKHLWCLTHIETLSIW  242 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~l~~~~~d~~i~i~  242 (389)
                      +++|+|++. +|++|+.||.|++||+.++.   ........|...|.+++|+|         .++.++++++.|+.|++|
T Consensus       167 ~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw  242 (287)
T d1pgua2         167 YISISPSET-YIAAGDVMGKILLYDLQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY  242 (287)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEETTTTE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred             EEEeccCcc-ccccccccccccceeecccc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence            999999996 99999999999999998542   12233456888999999985         345689999999999999


Q ss_pred             EcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEe
Q 016457          243 DWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPV  300 (389)
Q Consensus       243 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~  300 (389)
                      |++++ +.+..+.+            |...|.+++|+|++   .|++++.||.|++|++
T Consensus       243 ~~~~~~~~~~~~~~------------h~~~V~~v~~~~~~---~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         243 SVKRPMKIIKALNA------------HKDGVNNLLWETPS---TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ESSCTTCCEEETTS------------STTCEEEEEEEETT---EEEEEETTSCEEEEEE
T ss_pred             ECCCCCeEEEEeCC------------CCCCeEEEEECCCC---EEEEEECCCeEEEEEE
Confidence            99774 45555554            77999999999975   4688889999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=2.8e-28  Score=215.98  Aligned_cols=314  Identities=8%  Similarity=-0.021  Sum_probs=219.1

Q ss_pred             ccccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeee-----ecCCCCcEEEE
Q 016457           14 SQSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGE-----CKGHSSTVNQI   86 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-----~~~~~~~v~~i   86 (389)
                      ..+.+.+++|++||+.  +.+.++.....+..++|+|||++|++++.|++|++||+.+++....     ..+|...+.++
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            3567789999999986  5777787766799999999999999999999999999998864432     23566777888


Q ss_pred             EEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCC-----------eEEEEEeCCCCeEEEeec-CCeEEEEEC
Q 016457           87 SFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQE-----------IFCFSFGGSTDYLLAAGC-GSQIQFWDW  153 (389)
Q Consensus        87 ~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~-d~~i~iwd~  153 (389)
                      +|+|++  +++ +++..++.+++||..++..+..+..+...           ...+.+++++..++.... .+.+.+++.
T Consensus       115 ~~spDG--~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         115 FKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             STTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eecCCC--CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            889999  565 55668999999999999988888765333           344555555555555444 456666666


Q ss_pred             cCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEE
Q 016457          154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLW  231 (389)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~  231 (389)
                      ............+...+..+.|+|+++.++++...+..+.+++..++.    ......  ..........+..+....+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE----EEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc----EEEEeccCCcccccceeeeecCCCCceE
Confidence            555433222225778899999999997445555567779999998542    222221  12222334444423333332


Q ss_pred             --EEecCCcEEEEEcCC-------CceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE-------EecCCceE
Q 016457          232 --CLTHIETLSIWDWKD-------GQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI-------GGTGAGTV  295 (389)
Q Consensus       232 --~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-------~g~~dg~i  295 (389)
                        ....|+.+.+|+...       ++....+.+            |...+..++|+|+++  +|+       +++.+++|
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g------------~~~~v~~v~~sPdg~--~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQG------------QGGGSLFIKTHPKSS--HLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC------------SSSCCCCEECCTTCS--EEEECCTTCSSHHHHTCE
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEec------------CCCceeEEEcCCCCc--eEEEeecCCCCcccCCEE
Confidence              333567888887654       356667766            668899999999999  666       45668899


Q ss_pred             EEEEeccCCccccCCCeEEEe--------cccceeeeeccCCCcccCCCCCCCceeEE-E----ecCCCeEEEEeccCCc
Q 016457          296 GYFPVNYGGAATIGPPEAVLV--------GGHTAVVRSVLPMPSVQGRPAQSHGIFGW-T----GGEDGRLCCWLSDDSS  362 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~s~~~~~l~-s----~~~dg~v~iW~~~~~~  362 (389)
                      +|||+.+++.      ..++.        ..|...|..+         +|||||++++ +    ++.||.|+|||..+..
T Consensus       335 ~vwd~~t~~~------~~~~~~~~~~~~~~~~~~rv~~~---------~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         335 AVFDLKNLDA------KYQVLPIAEWADLGEGAKRVVQP---------EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             EEEETTCTTS------CCEEECHHHHHCCCSSCCCEEEE---------EECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             EEEECCCCCc------CeEEeccchhcccCCCCccEEEE---------EECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            9999998875      23332        1344556777         9999999763 3    2578999999988763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=2.1e-26  Score=193.90  Aligned_cols=267  Identities=9%  Similarity=0.044  Sum_probs=207.8

Q ss_pred             EEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEE
Q 016457           54 AVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSF  132 (389)
Q Consensus        54 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  132 (389)
                      ++++.+++|.+||+++++.+.++... ..+..++|+|++  ++| ++++.++.|++||+.+++.+..+..+ ..+..++|
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG--~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~~   81 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAV   81 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCC--CEEEEEECCCCEEEEEECCCCceeeeeecc-cccccccc
Confidence            34567899999999999999988744 557899999999  565 56778999999999999999999886 46789999


Q ss_pred             eCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee
Q 016457          133 GGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI  211 (389)
Q Consensus       133 ~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  211 (389)
                      ++++..+++++. ++.+.+|+..+++....+.  +.....++.++|++..+++++..++.+.+|+..+.    . .....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~-~~~~~  154 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----A-VINTV  154 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----E-EEEEE
T ss_pred             ccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeecccc----c-eeeec
Confidence            999988877665 7899999999998888886  55678899999999745566777888999999854    2 22333


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecC-CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHI-ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-  289 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-  289 (389)
                      .....+..++++ +++..+++++.+ +.+.+|+....+....+..             ...+..++++++++.++++.. 
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         155 SVGRSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             ECCSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEEECTTSSEEEEEEEC
T ss_pred             ccCCCceEEEee-ccccceeeecccccccccccccceeeeecccc-------------cCCcceeecccccccccccccc
Confidence            445567888998 555666666554 6777888777766666553             356778999999996554433 


Q ss_pred             cCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeE-EEecCCCeEEEEeccCCc
Q 016457          290 TGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFG-WTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       290 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~v~iW~~~~~~  362 (389)
                      ..++.|++||..+++.      +..+.  +...+.++         +|+|||++| ++++.|+.|++||+.+..
T Consensus       221 ~~~~~v~v~D~~t~~~------~~~~~--~~~~~~~v---------a~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         221 KYFNTVSMIDTGTNKI------TARIP--VGPDPAGI---------AVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             SSCCEEEEEETTTTEE------EEEEE--CCSSEEEE---------EECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ceeeeeeeeecCCCeE------EEEEc--CCCCEEEE---------EEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            3457899999998776      45554  33456788         999999986 678889999999998763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=6.4e-26  Score=190.91  Aligned_cols=264  Identities=13%  Similarity=0.089  Sum_probs=208.0

Q ss_pred             ccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEE-EEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCC
Q 016457           16 SCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMA-VSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        16 s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      +.+.+++|.+||+.  +.+.++.....+..++|+|||++|+ ++..++.|++||+.+++.+..+..+. .+..++|++++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~   85 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG   85 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred             EECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccc
Confidence            35678999999986  4555665566788999999999875 55678999999999999999988765 46889999998


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCee
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVT  171 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~  171 (389)
                      . ..++++..++.+.+|+..+++....+..+ ....++.++|++..+++++. ++.+.+|+..+...+..+.  +...+.
T Consensus        86 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  161 (301)
T d1l0qa2          86 K-QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPK  161 (301)
T ss_dssp             S-EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEE
T ss_pred             c-cccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCce
Confidence            4 35566677889999999999999888875 67789999999998877666 8899999999998888886  556688


Q ss_pred             EEEEecCCCCeEEEEeCC-CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec---CCcEEEEEcCCC
Q 016457          172 QVHFVPNNQNKVVSASVD-GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH---IETLSIWDWKDG  247 (389)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~  247 (389)
                      .++++|++. .+++++.+ +.+.+|+....     ...........+..++++ +++..++++..   ++.|.+||+.++
T Consensus       162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         162 GIAVTPDGT-KVYVANFDSMSISVIDTVTN-----SVIDTVKVEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEECTTSS-EEEEEETTTTEEEEEETTTT-----EEEEEEECSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EEEeecccc-ceeeecccccccccccccce-----eeeecccccCCcceeecc-ccccccccccccceeeeeeeeecCCC
Confidence            999999996 66666554 66777776632     233344455677889998 56666655543   368999999999


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +.+..+..             ...+..++|+|+|+.+ +++++.++.|++||+.+++.
T Consensus       235 ~~~~~~~~-------------~~~~~~va~spdg~~l-~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         235 KITARIPV-------------GPDPAGIAVTPDGKKV-YVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEEEEEEC-------------CSSEEEEEECTTSSEE-EEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEEcC-------------CCCEEEEEEeCCCCEE-EEEECCCCeEEEEECCCCeE
Confidence            98888764             2557899999999843 36788899999999999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.9e-28  Score=215.51  Aligned_cols=318  Identities=8%  Similarity=-0.056  Sum_probs=214.4

Q ss_pred             cccCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceee--ee---ecCCCCcEEEEE
Q 016457           15 QSCDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYS--GE---CKGHSSTVNQIS   87 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~--~~---~~~~~~~v~~i~   87 (389)
                      .+.+.+++|.+||..  +.+..+.....+..++|+|||+++++++.|+.|++||+.+++..  ..   ..+|...+.+..
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~  115 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM  115 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence            577889999999986  57777776667999999999999999999999999999887532  22   234666677778


Q ss_pred             EeCCCCCCE-EEEEecCCeEEEEEccCCeEEEEEEcC-----------CCCeEEEEEeCCCCeEEEeec-CCeEEEEECc
Q 016457           88 FSGPSTPHV-LHSCSSDGTIRAWDTRSFHEVWSVTAG-----------SQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWR  154 (389)
Q Consensus        88 ~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~  154 (389)
                      |+||+  ++ +++++.+++|++||..+++.+..+..+           ......+.++|++..++++.. ++.|.+||..
T Consensus       116 ~SpDG--~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         116 EGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             TTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cCCCC--CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            88899  55 578889999999999999999887754           345667889998888776655 7999999998


Q ss_pred             CCceeeeeeecccCCeeEEEEecCCCCeEEEE-eCCCcEEEEecCCCCCCCccceeee-----ccCCceeeEEEecCCCc
Q 016457          155 NKKQVACLEESHVEDVTQVHFVPNNQNKVVSA-SVDGLICTFDTGGDINDDDLLESVI-----NVGTSVGKVGFFGETNK  228 (389)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~  228 (389)
                      +.+........+...+..++|+|+++ +++++ ..++.+.++|..+..    ......     .+........+. ..+.
T Consensus       194 ~~~~~~~~~i~~g~~~~~~~~spdg~-~~~va~~~~~~v~v~d~~~~~----~~~~~~~g~~~~~~~~~~~~~~~-~~g~  267 (432)
T d1qksa2         194 DLNNLKTTEISAERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGK----LVAIEDTGGQTPHPGRGANFVHP-TFGP  267 (432)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSC-EEEEEEGGGTEEEEEETTTTE----EEEEEECSSSSBCCTTCEEEEET-TTEE
T ss_pred             CCCcceEEEEcccCccccceECCCCC-EEEEeccccceEEEeecccce----EEEEeccCccccccCcccceecC-CCCc
Confidence            87654433323667789999999997 55555 456678999988542    111111     112222222222 3333


Q ss_pred             EEEEEe-cCCcEEEEEcCCC-------ceeEEeecc--cccccCC-------cc----CCCCCceeeecccCCCCeEEEE
Q 016457          229 HLWCLT-HIETLSIWDWKDG-------QNVASFENA--RSLASDS-------WT----LDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       229 ~l~~~~-~d~~i~i~d~~~~-------~~~~~~~~~--~~~~~~~-------~~----~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ...+.. .++.+.+|+....       +....+...  ..+...+       |.    ..|......+++ ||++  .++
T Consensus       268 ~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~--~la  344 (432)
T d1qksa2         268 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIK--AMT  344 (432)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGG--GCC
T ss_pred             eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eech--hhc
Confidence            333332 3677888876543       222332211  1011000       00    001112223443 7777  568


Q ss_pred             EecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCceeEEEe-----cCCCeEEEEeccCCc
Q 016457          288 GGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTG-----GEDGRLCCWLSDDSS  362 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~-----~~dg~v~iW~~~~~~  362 (389)
                      +++.|+.+++|++.++..         +. .|...|..+         +|||||++|+.+     ..||.|+|||.....
T Consensus       345 ~~s~d~~~k~w~~~~~~~---------l~-~~~~~v~~~---------~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         345 GDGSDPEFKTLPIAEWAG---------IT-EGQPRVVQG---------EFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             CSSSCCCEEEECHHHHHT---------CC-SSCCEEEEE---------EECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             ccccCCceEecccccccc---------cC-CCCCcEEEe---------EECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            888899999998865432         22 466678888         999999987554     357899999988774

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.3e-27  Score=206.59  Aligned_cols=276  Identities=11%  Similarity=-0.000  Sum_probs=208.8

Q ss_pred             EEEeecC-CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC--eEEEEEccCCeEEE
Q 016457           42 FEIVPKN-DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG--TIRAWDTRSFHEVW  118 (389)
Q Consensus        42 ~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~  118 (389)
                      +.-.||| ||+++|+++ +|.|++||+++++..+.  +|...|.+++|+|++  +.|++++.+.  .|++||+.+++.. 
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg--~~l~~~~~~~g~~v~v~d~~~~~~~-   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDT--KVAFIHGTREGDFLGIYDYRTGKAE-   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSS--EEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCC--CEEEEEEcCCCCEEEEEECCCCcEE-
Confidence            4567999 999999987 68999999988776653  589999999999999  6887766553  7999999877655 


Q ss_pred             EEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe----------C
Q 016457          119 SVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS----------V  188 (389)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~  188 (389)
                      .+..|...|.+++|+|++.++++++.++.+++|++.+++....+. .|...+.+++|+|+++ +|+.+.          .
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSR-FIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCC
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhcccee-eeeeeccccccceeecc
Confidence            566788999999999999999999999999999999998888887 7888999999999996 777543          3


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee-------EEeeccccccc
Q 016457          189 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV-------ASFENARSLAS  261 (389)
Q Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~  261 (389)
                      ++.+++||+.++.     ......+...+..++|+ ++++.|++++.++.+.+|+.......       ..+..      
T Consensus       158 ~~~~~v~d~~~~~-----~~~~~~~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~------  225 (360)
T d1k32a3         158 MQAIHVYDMEGRK-----IFAATTENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL------  225 (360)
T ss_dssp             EEEEEEEETTTTE-----EEECSCSSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES------
T ss_pred             ccceeeeccccCc-----eeeeccccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEec------
Confidence            4568999998542     34445567788889999 78899999999999999997654322       11211      


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEEecCC-----ceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccC
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIGGTGA-----GTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQG  334 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d-----g~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~  334 (389)
                            +......+.|++++.  .++++..+     ..+..+++..+..       ..+.  .+|...+...        
T Consensus       226 ------~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------  282 (360)
T d1k32a3         226 ------IPGSPNPTKLVPRSM--TSEAGEYDLNDMYKRSSPINVDPGDY-------RMIIPLESSILIYSVP--------  282 (360)
T ss_dssp             ------STTCCCGGGCCCGGG--SCCCCCCCCTTGGGGCEECSCCCBCE-------EEEEECSSEEEEEECC--------
T ss_pred             ------ccCccccceECCCcC--cccccceeecccccceeecccCcCce-------eEeeecCCCceEEEEE--------
Confidence                  445566778888876  44444333     2244444444432       2232  1233333333        


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          335 RPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       335 ~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       .+++++.++++++.++.|++|+++..
T Consensus       283 -~~~~~~~~~~~~~~~~~i~~~d~~~~  308 (360)
T d1k32a3         283 -VHGEFAAYYQGAPEKGVLLKYDVKTR  308 (360)
T ss_dssp             -CCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             -ecCCCeeEEEecCCCCEEEEEECCCC
Confidence             66777788999999999999998875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.2e-25  Score=198.82  Aligned_cols=290  Identities=10%  Similarity=0.052  Sum_probs=200.3

Q ss_pred             eecCCC--CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE--EE
Q 016457           45 VPKNDW--SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW--SV  120 (389)
Q Consensus        45 ~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~  120 (389)
                      .++.|.  -++++...||+|+|||+.+++.+..+..|. .+..++|+|||  ++|++++.|++|++||+.+++...  .+
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDG--k~l~~~~~d~~v~vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEI  101 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCC--CEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence            344443  355677789999999999999999998774 68999999999  799999999999999999887543  33


Q ss_pred             E---cCCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeeecccCCee-----------EEEEecCCCCeEEE
Q 016457          121 T---AGSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEESHVEDVT-----------QVHFVPNNQNKVVS  185 (389)
Q Consensus       121 ~---~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~-----------~~~~~~~~~~~l~~  185 (389)
                      .   .|...+.+++|+|+++++++++ .++.+.+||..++..+..+. .|...+.           .+.+++++..++.+
T Consensus       102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence            3   2344566677888999987766 48999999999998877766 4544443           44455555422222


Q ss_pred             EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE-ecCCcEEEEEcCCCceeEEeecccccccCCc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL-THIETLSIWDWKDGQNVASFENARSLASDSW  264 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  264 (389)
                      ....+.+.+++....   .........+...+..+.++ +++++++++ ..+..+.+++..+++.+..+....       
T Consensus       181 ~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------  249 (426)
T d1hzua2         181 VKETGKVLLVNYKDI---DNLTVTSIGAAPFLADGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-------  249 (426)
T ss_dssp             ETTTTEEEEEECSSS---SSCEEEEEECCSSEEEEEEC-TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS-------
T ss_pred             cCCCCeEEEEEeccc---cceeeEEeccCCccEeeeEC-CCCcEEEeeeecccceeeeecccccEEEEeccCC-------
Confidence            333344444444422   12233445677788999999 555655555 456689999999999888776543       


Q ss_pred             cCCCCCceeeecccCCCC-eEEEEEecCCceEEEEEeccCCcc-ccCCCeEEEecccceeeeeccCCCcccCCCCCCCce
Q 016457          265 TLDDVDYFVDCHYPGEGE-NLWVIGGTGAGTVGYFPVNYGGAA-TIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI  342 (389)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~-~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~  342 (389)
                         +........+...+. ..+.++.+.|+.+.+|+....... ..++....+. +|...+..+         +|+||++
T Consensus       250 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v---------~~sPdg~  316 (426)
T d1hzua2         250 ---TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFI---------KTHPKSS  316 (426)
T ss_dssp             ---CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCE---------ECCTTCS
T ss_pred             ---cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEE---------EcCCCCc
Confidence               122223333333332 223445667888888887665331 1233456666 899999999         9999999


Q ss_pred             eEE-------EecCCCeEEEEeccCCc
Q 016457          343 FGW-------TGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       343 ~l~-------s~~~dg~v~iW~~~~~~  362 (389)
                      +|+       +++.|++|++|++....
T Consensus       317 ~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         317 HLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             eEEEeecCCCCcccCCEEEEEECCCCC
Confidence            999       46678999999998763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=8.9e-25  Score=186.75  Aligned_cols=268  Identities=9%  Similarity=0.041  Sum_probs=196.9

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecC--CCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEEcCCC--
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKG--HSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVTAGSQ--  125 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~--  125 (389)
                      +++++++.|++|++||+++++.+..+..  +...+.+++|+|++  +++ ++++.++.|.+||+.+++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg--~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG--RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS--SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC--CEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            4799999999999999999999988865  34567899999999  565 5677899999999999999998887632  


Q ss_pred             ---CeEEEEEeCCCCeEEEeec------------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          126 ---EIFCFSFGGSTDYLLAAGC------------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       126 ---~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                         .+..++|+|+++.++++..            +..+.+||..+++.+..+.  +...+..++|+|+++ ++++++.  
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~--  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGLGR--  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEESS--
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCC-EEEEEcC--
Confidence               3457899999999988764            5789999999999888886  556788999999996 7877764  


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEec-----------------------CCCcEEEEEecCCcEEEEEcCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFG-----------------------ETNKHLWCLTHIETLSIWDWKDG  247 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~~l~~~~~d~~i~i~d~~~~  247 (389)
                      .+.+||..++.    .......+. ......+.+                       .+.........++.+.+|+..++
T Consensus       155 ~~~~~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         155 DLHVMDPEAGT----LVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             SEEEEETTTTE----EEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             CcceeeeecCc----EEEEeecCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            47789988542    111111110 000000000                       11111122233456889999888


Q ss_pred             ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccceeeeecc
Q 016457          248 QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVL  327 (389)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  327 (389)
                      .........           +...+..+.+++++.  +++.+  ++.|++||+.+++.      +..+.  +...+.++ 
T Consensus       230 ~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~--~~~i~v~d~~~~~~------~~~~~--~~~~~~~~-  285 (337)
T d1pbyb_         230 EMAMREVRI-----------MDVFYFSTAVNPAKT--RAFGA--YNVLESFDLEKNAS------IKRVP--LPHSYYSV-  285 (337)
T ss_dssp             CEEEEEEEE-----------CSSCEEEEEECTTSS--EEEEE--ESEEEEEETTTTEE------EEEEE--CSSCCCEE-
T ss_pred             cEEEEEecC-----------CCcceEEEEecccce--EEEEc--cccEEEEECCCCcE------EEEEc--CCCCEEEE-
Confidence            765433221           456778889999988  55554  58899999999876      55554  45567888 


Q ss_pred             CCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          328 PMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       328 ~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                              +|+|||++|++++.||.|++||+....
T Consensus       286 --------~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         286 --------NVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             --------EECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             --------EECCCCCEEEEEeCCCcEEEEECCCCc
Confidence                    999999999999999999999998763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=1.5e-24  Score=186.01  Aligned_cols=276  Identities=10%  Similarity=0.026  Sum_probs=197.0

Q ss_pred             EeecCCCCeEEEEecCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEE-EEEecCCeEEEEEccCCeEEEEEE
Q 016457           44 IVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVL-HSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        44 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      ++|++++++|++++.+++|.+||+.+++.+.++. .|...+.+++|+|++  +++ +++..++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG--~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCC--CEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            5789999999999999999999999999999886 456678899999999  555 566688999999999999998887


Q ss_pred             cCC------CCeEEEEEeCCCCeEEEeec------------CCeEEEEECcCCceeeeeee-cccCCeeEEEEecCCCCe
Q 016457          122 AGS------QEIFCFSFGGSTDYLLAAGC------------GSQIQFWDWRNKKQVACLEE-SHVEDVTQVHFVPNNQNK  182 (389)
Q Consensus       122 ~~~------~~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  182 (389)
                      ...      ..+..++|+|++..+++++.            ++.+.+||..+++....+.. .....+..+.+++++. +
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  158 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  158 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-E
Confidence            542      23557899999999888753            67899999988876655441 1234566677777763 4


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEe-------------------------cCCCcEEEEEecCC
Q 016457          183 VVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFF-------------------------GETNKHLWCLTHIE  237 (389)
Q Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------~~~~~~l~~~~~d~  237 (389)
                      ++ .+  +.+.+|++.++.    .+..+. .......+.++                         ......+.++..+.
T Consensus       159 ~~-~~--~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         159 YV-AG--PDIYKMDVKTGK----YTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             EE-ES--SSEEEECTTTCC----EEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             EE-eC--CcceEEEccCCC----EEEEEe-cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            44 33  568899987542    122111 11111122222                         12222344455566


Q ss_pred             cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEec
Q 016457          238 TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVG  317 (389)
Q Consensus       238 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~  317 (389)
                      .+.+||+.++.........           +...+..+.+++++.  +++.+. ++.|.+||..+++.      +..+. 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~-~~~v~v~d~~~~~~------~~~~~-  289 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDP--NQIYGV-LNRLAKYDLKQRKL------IKAAN-  289 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCT--TEEEEE-ESEEEEEETTTTEE------EEEEE-
T ss_pred             eEEEEECCCCceEEEEeec-----------ccceeEEEEEeCCCC--EEEEec-CCeEEEEECCCCcE------EEEEc-
Confidence            7888898887665543321           557788889999887  445553 45799999998776      55554 


Q ss_pred             ccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          318 GHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       318 ~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                       +...+.++         +|||||++|++++.||.|++||++..
T Consensus       290 -~~~~~~~v---------a~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         290 -LDHTYYCV---------AFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             -CSSCCCEE---------EECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             -CCCCEEEE---------EEcCCCCEEEEEeCCCcEEEEECccC
Confidence             34467888         99999999999999999999999876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.2e-23  Score=179.65  Aligned_cols=264  Identities=9%  Similarity=0.014  Sum_probs=195.0

Q ss_pred             ccccCCCCeEEEEecCc--eeeeeec---CcceEEEeecCCCCeEE-EEecCCeEEEEeCCCceeeeeecCCC-----Cc
Q 016457           14 SQSCDNVNSIKRFGLKN--SIQTNFG---DDYVFEIVPKNDWSLMA-VSLSTNVVKLYSPVTGQYSGECKGHS-----ST   82 (389)
Q Consensus        14 ~~s~~~~~~i~~w~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~   82 (389)
                      ..+++.|++|++||+.+  .+..+..   ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.     ..
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~   83 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS   83 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence            35678899999999973  5555543   45678999999999875 55678999999999999988876543     34


Q ss_pred             EEEEEEeCCCCCCEEEEEe------------cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           83 VNQISFSGPSTPHVLHSCS------------SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      +..++|+|++  ++++++.            .+..+.+||..+++.+..+..+ ..+.+++|+|++..+++++.  .+.+
T Consensus        84 ~~~v~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          84 LFGAALSPDG--KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             TTCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             eeeEEEcCCC--cEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--Ccce
Confidence            5678999999  6777765            4678999999999999888864 67889999999999998764  5778


Q ss_pred             EECcCCceeeeeeecccCCeeEEEEecCCC-----------------------CeEEEEeCCCcEEEEecCCCCCCCccc
Q 016457          151 WDWRNKKQVACLEESHVEDVTQVHFVPNNQ-----------------------NKVVSASVDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (389)
                      ||..+++....+. .+. ......+.|++.                       ..+..+..++.+.+||..++.   ...
T Consensus       159 ~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  233 (337)
T d1pbyb_         159 MDPEAGTLVEDKP-IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAM  233 (337)
T ss_dssp             EETTTTEEEEEEC-STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEE
T ss_pred             eeeecCcEEEEee-cCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---EEE
Confidence            9999888777665 211 111112222211                       011222334568888887542   222


Q ss_pred             eeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          208 ESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      .....+...+..+.+. +++.+++..  ++.|++||+.+++.+..+.             +...+.+++|+|+|+  +|+
T Consensus       234 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-------------~~~~~~~~~~s~dG~--~l~  295 (337)
T d1pbyb_         234 REVRIMDVFYFSTAVN-PAKTRAFGA--YNVLESFDLEKNASIKRVP-------------LPHSYYSVNVSTDGS--TVW  295 (337)
T ss_dssp             EEEEECSSCEEEEEEC-TTSSEEEEE--ESEEEEEETTTTEEEEEEE-------------CSSCCCEEEECTTSC--EEE
T ss_pred             EEecCCCcceEEEEec-ccceEEEEc--cccEEEEECCCCcEEEEEc-------------CCCCEEEEEECCCCC--EEE
Confidence            3344566677778887 666666655  5799999999999988876             346688999999999  778


Q ss_pred             EecCCceEEEEEeccCCc
Q 016457          288 GGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~  305 (389)
                      +++.+|.|++||..+.+.
T Consensus       296 v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         296 LGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EESBSSEEEEEETTTCCE
T ss_pred             EEeCCCcEEEEECCCCcE
Confidence            899999999999998776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=4.1e-23  Score=182.19  Aligned_cols=299  Identities=13%  Similarity=0.036  Sum_probs=197.3

Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCe--EEEEEEc--
Q 016457           47 KNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFH--EVWSVTA--  122 (389)
Q Consensus        47 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~--  122 (389)
                      ++++-++++.+.+|+|.|||..+++++..+..+ ..+..++|+|++  +++++++.|++|++||+.+++  ....++.  
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG--~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC--CEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            344445688888999999999999999999877 469999999999  799999999999999998765  3344442  


Q ss_pred             -CCCCeEEEEEeCCCCeEEEee-cCCeEEEEECcCCceeeeeee----------cccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          123 -GSQEIFCFSFGGSTDYLLAAG-CGSQIQFWDWRNKKQVACLEE----------SHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       123 -~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                       |...+.+..|+|+++++++++ .++.|++||..+++++..+..          .+......+.++|+++.++++...++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence             344555667788999886554 599999999999988876651          23345667899999975567777889


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          191 LICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      .|.+||..+..   ........+...+..++|+ ++++++++++. ++.+.++|..+++.+..+.......       |.
T Consensus       186 ~i~~~d~~~~~---~~~~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~-------~~  254 (432)
T d1qksa2         186 KILLVDYTDLN---NLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-------HP  254 (432)
T ss_dssp             EEEEEETTCSS---EEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-------CC
T ss_pred             eEEEEEccCCC---cceEEEEcccCccccceEC-CCCCEEEEeccccceEEEeecccceEEEEeccCcccc-------cc
Confidence            99999988432   1122233456678899999 67776666655 5689999999888877765432111       22


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEEeccCCccc-cCCCeEEEeccccee------------eeecc---CCCccc
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAAT-IGPPEAVLVGGHTAV------------VRSVL---PMPSVQ  333 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~-~~~~~~~~~~~h~~~------------v~~~~---~~~~~~  333 (389)
                      .......+...+. .+......++.|.+|......... ..+....+. .+...            +....   +.....
T Consensus       255 ~~~~~~~~~~~g~-~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~-~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~  332 (432)
T d1qksa2         255 GRGANFVHPTFGP-VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALGGGSLFIKTHPNSQYLYVDATLNPEAEIS  332 (432)
T ss_dssp             TTCEEEEETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred             CcccceecCCCCc-eecccccCCceEEecccccccccccccEEEEEEE-cCCCCeEEEEecCCccceeecccCCCCCCee
Confidence            3333333333332 222233347788888765543211 111122222 22111            11110   110011


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeccCC
Q 016457          334 GRPAQSHGIFGWTGGEDGRLCCWLSDDS  361 (389)
Q Consensus       334 ~~~~s~~~~~l~s~~~dg~v~iW~~~~~  361 (389)
                      .....||++.|++++.|+.+++|++...
T Consensus       333 ~sv~vpDg~~la~~s~d~~~k~w~~~~~  360 (432)
T d1qksa2         333 GSVAVFDIKAMTGDGSDPEFKTLPIAEW  360 (432)
T ss_dssp             TCEEEEEGGGCCCSSSCCCEEEECHHHH
T ss_pred             eEEEEEechhhcccccCCceEecccccc
Confidence            1122389999999999999999998654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.92  E-value=1.1e-21  Score=170.22  Aligned_cols=295  Identities=11%  Similarity=0.037  Sum_probs=200.8

Q ss_pred             CcceEEEeecCCCCeEEEEe-----cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------c
Q 016457           38 DDYVFEIVPKNDWSLMAVSL-----STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------S  102 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~  102 (389)
                      ..++.+++++|||+.+++..     ..+.|.+||..+++.+..+..+..+  .++|+|++  ++|++++          .
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG--~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSG--SEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCC--CEEEEEeecCCccccccc
Confidence            67788999999999887753     2467999999999999988776544  79999999  6887764          4


Q ss_pred             CCeEEEEEccCCeEEEEEEcCCCCe-------EEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCeeEE
Q 016457          103 DGTIRAWDTRSFHEVWSVTAGSQEI-------FCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDVTQV  173 (389)
Q Consensus       103 dg~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  173 (389)
                      ++.|.+||..+++.+..+..+....       ..+.|++++..+++...  ++.+.+|+....+.....     ....++
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  170 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----SSPTCY  170 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-----ccceeE
Confidence            6789999999999998887764443       34678888887766654  567888888776554433     346788


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCC--ceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeE
Q 016457          174 HFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGT--SVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVA  251 (389)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  251 (389)
                      .++|+++..+++.+.|+.+.+||...................  ....+.+. ++ ..++..+.++.+.+|+........
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-KS-GRIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC-CC-ceEEEecCCceEEEEEcCCCeEEE
Confidence            999999867789999999999999854311111111111111  12333343 33 356667788899999988765432


Q ss_pred             Eeeccccc---ccCCccCCCCCceeeecccCCCCeE--------EEEEecCCceEEEEEeccCCccccCCCeEEEecccc
Q 016457          252 SFENARSL---ASDSWTLDDVDYFVDCHYPGEGENL--------WVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       252 ~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                      ........   ....+   .......+++++++..+        .++....++.+.+||..+++.      +..+.  +.
T Consensus       249 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~------~~~~~--~~  317 (373)
T d2madh_         249 KAPIDALSGGRKADTW---RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------SSQIS--LG  317 (373)
T ss_pred             EEeeccccCcEEeeee---ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE------EEEec--CC
Confidence            22110000   00000   11223345556655532        234556677899999998876      45543  55


Q ss_pred             eeeeeccCCCcccCCCCCCCcee--EEEecCCCeEEEEeccCCcc
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIF--GWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~--l~s~~~dg~v~iW~~~~~~~  363 (389)
                      ..+..+         +|+|||+.  +++++.|+.|++||+....+
T Consensus       318 ~~~~~~---------a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         318 HDVDAI---------SVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeeEE---------EECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            667788         99999984  57889999999999987744

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.3e-21  Score=162.43  Aligned_cols=283  Identities=11%  Similarity=0.150  Sum_probs=184.3

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeee--cCCCCcEEEEEEeCCCCCCEEEE-EecCCeEEEEEccCCeEEEEE---EcCCC
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGEC--KGHSSTVNQISFSGPSTPHVLHS-CSSDGTIRAWDTRSFHEVWSV---TAGSQ  125 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~---~~~~~  125 (389)
                      .+++++.+++|++|+++....+..+  ..|.+.+..|+|+|++  ++|++ +..|+.|++|++........+   ..+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG--~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK--RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS--SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCC--CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            3466778999999998754332222  2478899999999999  67755 445899999999765332222   22345


Q ss_pred             CeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEe-CCCcEEEEecCCCCC
Q 016457          126 EIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSAS-VDGLICTFDTGGDIN  202 (389)
Q Consensus       126 ~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~  202 (389)
                      .+..++|+|+++++++++. ++.|.+|+........... ..+...+.++.++|++. .+++++ .+..+.+|+......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~-~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSC
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce-eeeccccccceeeEEEeccCCc
Confidence            6778999999999999886 7799999987665443322 14667788999999996 655555 566799999875421


Q ss_pred             CCccce--eeeccCCceeeEEEecCCCcEEE-EEecCCcEEEEEcCCCce----eEEeecccccccCCccCCCCCceeee
Q 016457          203 DDDLLE--SVINVGTSVGKVGFFGETNKHLW-CLTHIETLSIWDWKDGQN----VASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       203 ~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      ......  ...........++|+ +++..++ +....+...+++......    .........      ..........+
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  235 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE------NFSDTRWAADI  235 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT------TCCSCCCEEEE
T ss_pred             ceeeeceeeeeecCCCccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeec------CCCccccceeE
Confidence            111111  112234556789998 5555554 444566788888654321    112111100      00133456678


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEe--cccceeeeeccCCCcccCCCCCCCceeEEEec-CCCe
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLV--GGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGG-EDGR  352 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~  352 (389)
                      +++++++.+ ++++..++.+.+|++.....      ...+.  ..+...++.+         +|+|||++|++++ .++.
T Consensus       236 ~~s~d~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~---------a~spDGk~l~va~~~~~~  299 (333)
T d1ri6a_         236 HITPDGRHL-YACDRTASLITVFSVSEDGS------VLSKEGFQPTETQPRGF---------NVDHSGKYLIAAGQKSHH  299 (333)
T ss_dssp             EECTTSSEE-EEEETTTTEEEEEEECTTSC------CEEEEEEEECSSSCCCE---------EECTTSSEEEEECTTTCE
T ss_pred             EEecccCce-eeecccCCeEEEEEEcCCCC------EEEEEEEeCCCCCeeEE---------EEeCCCCEEEEEECCCCe
Confidence            899999853 45667788999999876543      12222  0122344556         9999999877664 5689


Q ss_pred             EEEEeccC
Q 016457          353 LCCWLSDD  360 (389)
Q Consensus       353 v~iW~~~~  360 (389)
                      |++|+++.
T Consensus       300 v~v~~id~  307 (333)
T d1ri6a_         300 ISVYEIVG  307 (333)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99998865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=8.8e-21  Score=163.10  Aligned_cols=288  Identities=11%  Similarity=0.019  Sum_probs=191.0

Q ss_pred             ceEEEeecCCCCeEEEEe-----cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE----------ecCC
Q 016457           40 YVFEIVPKNDWSLMAVSL-----STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC----------SSDG  104 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg  104 (389)
                      ++.-.+.+||++.+++..     .++.|.+||..+++.+.++..+..+  .++|+|++  ++|+++          ..|+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg--~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDG--SFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS--SCEEEEEEEEEETTEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCC--CEEEEEeCCCccccccCCCC
Confidence            334446789999988764     3557999999999999988765544  79999999  566653          4578


Q ss_pred             eEEEEEccCCeEEEEEEcCC-------CCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccC-------
Q 016457          105 TIRAWDTRSFHEVWSVTAGS-------QEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVE-------  168 (389)
Q Consensus       105 ~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~-------  168 (389)
                      .|++||+.+++.+..+..+.       .....++|+|++..++++..  +..+.+||..+++.+..+. .+..       
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  157 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTA  157 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcceEeecC
Confidence            99999999999998887542       22346899999999888754  6789999999998887776 2221       


Q ss_pred             CeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCc
Q 016457          169 DVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       169 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  248 (389)
                      ....+.+++++..+++....++.+.+++.....         ..+...+....+. .++..++.++.++.+++|++..++
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------PEDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------CTTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEeccccc---------ceecceeeecccc-CCCCeEEEecCCCeEEEEecCCCc
Confidence            223344555554222223333444444443211         1223345566777 555678888999999999998775


Q ss_pred             eeEE--eecccc-cccCCccCCCCCceeeecccCCCCeEEEEEec--------CCceEEEEEeccCCccccCCCeEEEec
Q 016457          249 NVAS--FENARS-LASDSWTLDDVDYFVDCHYPGEGENLWVIGGT--------GAGTVGYFPVNYGGAATIGPPEAVLVG  317 (389)
Q Consensus       249 ~~~~--~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~--------~dg~i~i~~~~~~~~~~~~~~~~~~~~  317 (389)
                      ....  ...... .....+   .......+++++++..+++....        ....|.+||..+++.      +..+. 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~------~~~~~-  297 (355)
T d2bbkh_         228 AKFLPAVEALTEAERADGW---RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER------LAKFE-  297 (355)
T ss_dssp             CEECCCEESSCHHHHHTTE---EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------EEEEE-
T ss_pred             EEEEeccCCcccceEeeee---eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE------EEEec-
Confidence            4321  111000 000000   11233557888998855443322        125799999998876      55665 


Q ss_pred             ccceeeeeccCCCcccCCCCCCCce--eEEEecCCCeEEEEeccCCc
Q 016457          318 GHTAVVRSVLPMPSVQGRPAQSHGI--FGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       318 ~h~~~v~~~~~~~~~~~~~~s~~~~--~l~s~~~dg~v~iW~~~~~~  362 (389)
                       +...+.++         +|+|||+  ++++++.|+.|++||+....
T Consensus       298 -~~~~~~~~---------a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         298 -MGHEIDSI---------NVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             -EEEEECEE---------EECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             -CCCCEEEE---------EEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence             44567888         9999997  45778889999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=2.3e-21  Score=165.93  Aligned_cols=267  Identities=9%  Similarity=-0.045  Sum_probs=186.7

Q ss_pred             CCccccCCCCeEEEEecC--ceeeeeec--CcceEEEeecCCCCeEEE-EecCCeEEEEeCCCceeeeeecCCC------
Q 016457           12 PKSQSCDNVNSIKRFGLK--NSIQTNFG--DDYVFEIVPKNDWSLMAV-SLSTNVVKLYSPVTGQYSGECKGHS------   80 (389)
Q Consensus        12 ~~~~s~~~~~~i~~w~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~------   80 (389)
                      ...++++.+++|.+||+.  +.+.++..  ...+.+++|+|||+++++ +..++.|++||+.+++.+..+....      
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~   88 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   88 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence            356788899999999997  45666553  556889999999998755 4568999999999998887665322      


Q ss_pred             CcEEEEEEeCCCCCCEEEEEe------------cCCeEEEEEccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeecCC
Q 016457           81 STVNQISFSGPSTPHVLHSCS------------SDGTIRAWDTRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGCGS  146 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~  146 (389)
                      ..+..++|+|++  +++++++            .++.+.+|+..+++....+..+  ...+..+.++ ++..+++.+  +
T Consensus        89 ~~~~~v~~s~DG--~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~  163 (346)
T d1jmxb_          89 RSMYSFAISPDG--KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-DDGSLYVAG--P  163 (346)
T ss_dssp             ECSSCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-TTSCEEEES--S
T ss_pred             CceEEEEEecCC--CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec-CCCEEEEeC--C
Confidence            245689999999  6776654            4778899998877654433322  3456666676 444555543  5


Q ss_pred             eEEEEECcCCceeeeeeecccCCeeEEEEecCCCC-------------------------eEEEEeCCCcEEEEecCCCC
Q 016457          147 QIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQN-------------------------KVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~l~~~~~d~~i~i~d~~~~~  201 (389)
                      .+.+||+.+++.+..+.  .......+.++|++..                         .++++..+..+.+||+.++.
T Consensus       164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SEEEECTTTCCEEEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             cceEEEccCCCEEEEEe--cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence            68999999888877765  2223334444444421                         22333344557777777432


Q ss_pred             CCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          202 NDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                         ........+...+..+.+++++ .+++... ++.|.+||..+++.+..+..             ...+.+++|+|||
T Consensus       242 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~~~-------------~~~~~~va~s~DG  303 (346)
T d1jmxb_         242 ---THTQEFADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAANL-------------DHTYYCVAFDKKG  303 (346)
T ss_dssp             ---EEEEEEEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEEEEEEC-------------SSCCCEEEECSSS
T ss_pred             ---eEEEEeecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEEEEEcC-------------CCCEEEEEEcCCC
Confidence               2233344567778888888554 4455444 45799999999998887763             3568899999999


Q ss_pred             CeEEEEEecCCceEEEEEeccCCc
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +  +|++++.||.|++||..+++.
T Consensus       304 ~--~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         304 D--KLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             S--CEEEESBSSEEEEEETTTTEE
T ss_pred             C--EEEEEeCCCcEEEEECccCCE
Confidence            9  678888999999999998776

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.2e-19  Score=154.27  Aligned_cols=274  Identities=11%  Similarity=0.104  Sum_probs=184.6

Q ss_pred             cccCCCCeEEEEecCc--ee---eeeecCcceEEEeecCCCCeEEEEec-CCeEEEEeCCCceeeeee---cCCCCcEEE
Q 016457           15 QSCDNVNSIKRFGLKN--SI---QTNFGDDYVFEIVPKNDWSLMAVSLS-TNVVKLYSPVTGQYSGEC---KGHSSTVNQ   85 (389)
Q Consensus        15 ~s~~~~~~i~~w~~~~--~~---~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~---~~~~~~v~~   85 (389)
                      .+++.+++|++|++..  .+   +.+...+.|..++|+|||++|++++. |+.|++|++........+   ..+...+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            4567889999999752  22   33334788999999999999866654 899999998765433222   224456778


Q ss_pred             EEEeCCCCCCEEEEEec-CCeEEEEEccCCeEEEE--EEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeee
Q 016457           86 ISFSGPSTPHVLHSCSS-DGTIRAWDTRSFHEVWS--VTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVAC  161 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~  161 (389)
                      ++|+|++  ++|++++. ++.|.+|+.........  ...+...+.++.++|++..+++++. +..|.+|+.........
T Consensus        88 l~~spDg--~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          88 ISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             EEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEcCCC--CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            9999999  68888774 67899999877655433  3445677889999999999888876 67899999876543321


Q ss_pred             e-----eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeee------ccCCceeeEEEecCCCcE-
Q 016457          162 L-----EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVI------NVGTSVGKVGFFGETNKH-  229 (389)
Q Consensus       162 ~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~-  229 (389)
                      .     ..........++|++++...+.+....+...+++...............      ........++++ +++++ 
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~~  244 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT-PDGRHL  244 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC-TTSSEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe-cccCce
Confidence            1     1134456788999999863444555667788888764322111111111      122345667888 55554 


Q ss_pred             EEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE-EecCCceEEEEEecc
Q 016457          230 LWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI-GGTGAGTVGYFPVNY  302 (389)
Q Consensus       230 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~g~~dg~i~i~~~~~  302 (389)
                      ++++..++.+.+|++..............         ....+..++|+|||+  +|+ ++..++.|.+|+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~p~~~a~spDGk--~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQP---------TETQPRGFNVDHSGK--YLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEE---------CSSSCCCEEECTTSS--EEEEECTTTCEEEEEEEET
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeC---------CCCCeeEEEEeCCCC--EEEEEECCCCeEEEEEEEC
Confidence            45556678999999876644433332110         335677899999999  544 555678999997653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=1.6e-18  Score=149.90  Aligned_cols=282  Identities=9%  Similarity=-0.013  Sum_probs=188.0

Q ss_pred             CCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCCCCcE--
Q 016457           18 DNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGHSSTV--   83 (389)
Q Consensus        18 ~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~v--   83 (389)
                      +..+.|.+||..  +.+.++... ....++|+|||++|+++..          ++.|.+||..+++.+..+..+....  
T Consensus        44 ~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~  122 (373)
T d2madh_          44 SAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD  122 (373)
T ss_pred             CCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE
Confidence            344668888864  455555542 2337999999999998754          5789999999999988876655443  


Q ss_pred             -----EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEE-eecCCeEEEEECcCCc
Q 016457           84 -----NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLA-AGCGSQIQFWDWRNKK  157 (389)
Q Consensus        84 -----~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~  157 (389)
                           ..+.|++++...+++....++.+.+|+....+......    ...++.++|++..+++ .+.|+.+.+||...++
T Consensus       123 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             eccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence                 45678888841122333456778899988776654433    4567889998887754 5559999999998887


Q ss_pred             eeeeeee-----cccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc--------ceeeeccCCceeeEEEec
Q 016457          158 QVACLEE-----SHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL--------LESVINVGTSVGKVGFFG  224 (389)
Q Consensus       158 ~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~  224 (389)
                      .......     ........+.+.+++  .++..+.++.+.+|+..+.......        .............+++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (373)
T d2madh_         199 AGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             eeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec
Confidence            7655441     111223445555554  5667778899999998854210000        000000111222333331


Q ss_pred             ---------CCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceE
Q 016457          225 ---------ETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTV  295 (389)
Q Consensus       225 ---------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i  295 (389)
                               ..+..++....++.+.+||..+++.+..+.             +...+..++|+|||+.+++++++.|+.|
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-------------~~~~~~~~a~spDG~~~l~vt~~~d~~v  343 (373)
T d2madh_         277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------------LGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-------------CCCCeeEEEECCCCCEEEEEEeCCCCeE
Confidence                     233445566677889999999999888776             4467889999999997667899999999


Q ss_pred             EEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          296 GYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      ++||+.+++.      +..+. ++....+.+
T Consensus       344 ~v~D~~tg~~------~~~~~-~~g~~P~~l  367 (373)
T d2madh_         344 HIYDAGAGDQ------DQSTV-ELGSGPQVL  367 (373)
T ss_pred             EEEECCCCCE------EEEEC-CCCCCCcEE
Confidence            9999999887      66665 454444444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9.1e-20  Score=156.66  Aligned_cols=268  Identities=13%  Similarity=0.046  Sum_probs=180.9

Q ss_pred             cCCCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEe----------cCCeEEEEeCCCceeeeeecCCC----
Q 016457           17 CDNVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSL----------STNVVKLYSPVTGQYSGECKGHS----   80 (389)
Q Consensus        17 ~~~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~----   80 (389)
                      ......|.+||..  +.+.++.. +.+..++|+|||++|++++          .++.|++||..+++.+..+..+.    
T Consensus        24 ~~~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          24 FAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             GCSSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCCcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            3556789999986  34555543 2334799999999888754          37899999999998887764332    


Q ss_pred             ---CcEEEEEEeCCCCCCEEEEEe--cCCeEEEEEccCCeEEEEEEcCCCC-------eEEEEEeCCCCeEEEeec-CCe
Q 016457           81 ---STVNQISFSGPSTPHVLHSCS--SDGTIRAWDTRSFHEVWSVTAGSQE-------IFCFSFGGSTDYLLAAGC-GSQ  147 (389)
Q Consensus        81 ---~~v~~i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~-d~~  147 (389)
                         .....++|++++  ..++.+.  .+..+.+|+..+++.+..+..+...       ...+.+++++..++.... ++.
T Consensus       103 ~~~~~~~~~~~s~dg--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~  180 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDG--KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  180 (355)
T ss_dssp             CBSCCGGGEEECTTS--SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             ecCCCCceEEEecCC--CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence               223568999999  5666554  5678999999999998888765321       222344444444333322 333


Q ss_pred             EEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeec----------cCCce
Q 016457          148 IQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIN----------VGTSV  217 (389)
Q Consensus       148 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~i  217 (389)
                      +.+++......      .+...+....+.+++. .++.++.++.+++|++..+...  .+.....          .....
T Consensus       181 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         181 PEITHTEVFHP------EDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAK--FLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             CEEEECCCCSC------TTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCE--ECCCEESSCHHHHHTTEEECSS
T ss_pred             EEEEecccccc------eecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEE--EEeccCCcccceEeeeeeccce
Confidence            33333332211      2344456677888875 8889999999999999865311  1111111          11233


Q ss_pred             eeEEEecCCCcEEEEEecC----------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          218 GKVGFFGETNKHLWCLTHI----------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      ..++++ +++..++....+          ..|.+||..+++.+..+..             ...+.+++|+|||+.++++
T Consensus       252 ~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-------------~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         252 QQVAYH-RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------------GHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             SCEEEE-TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------------EEEECEEEECCSSSCEEEE
T ss_pred             EEEEEe-CCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-------------CCCEEEEEEcCCCCeEEEE
Confidence            557888 666666655443          3699999999998887763             2557899999999876678


Q ss_pred             EecCCceEEEEEeccCCccccCCCeEEEe
Q 016457          288 GGTGAGTVGYFPVNYGGAATIGPPEAVLV  316 (389)
Q Consensus       288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~  316 (389)
                      +++.|+.|++||..+++.      +..+.
T Consensus       318 ~~~~d~~i~v~D~~tg~~------~~~i~  340 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEE------LRSVN  340 (355)
T ss_dssp             EETTTTEEEEEETTTCCE------EEEEC
T ss_pred             EECCCCEEEEEECCCCCE------EEEEe
Confidence            888999999999999886      66665

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.8e-16  Score=135.41  Aligned_cols=293  Identities=9%  Similarity=-0.022  Sum_probs=187.9

Q ss_pred             cceEEEeecCCCCeEEEE---ecCC--eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe----------cC
Q 016457           39 DYVFEIVPKNDWSLMAVS---LSTN--VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS----------SD  103 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~---~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~d  103 (389)
                      +....++..++++.....   ..++  .|.+||..+++.+..+..+...  .++|+|++  +.|++.+          .|
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg--~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG--SDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTS--SCEEEEEEEETTTTSSSEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCC--CEEEEEcccCccccccccC
Confidence            344455677787754322   2333  5777799999998888776654  58999999  5777644          47


Q ss_pred             CeEEEEEccCCeEEEEEEcCCC-------CeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEE
Q 016457          104 GTIRAWDTRSFHEVWSVTAGSQ-------EIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHF  175 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  175 (389)
                      +.|.+||..+++.+..+..+..       ....++|+|++++++++.. ++.+.+||+.+++.+..+. .+....    +
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~----~  170 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFH----I  170 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCC----C
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-ccCcce----E
Confidence            7899999999999988875422       2346899999999988865 7999999999999888876 333221    2


Q ss_pred             ecCCCCeEEEEeCCCcEEEEecCCCCCCCcc--ceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          176 VPNNQNKVVSASVDGLICTFDTGGDINDDDL--LESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      .|.++..++..+.||.+.++++.........  ......+...+..+.+. +++..+.  ...+.+.+++...+......
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~v~~~~~~~~~~~~~~  247 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN-YPGMLVW--AVASSILQGDIPAAGATMKA  247 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET-TTTEEEE--CBSSCCEEEECCSSCCEEEC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc-cCcEEEE--ecCCCEEEEeecCCceEEEe
Confidence            2333347777888899888888744211100  01111223344455555 4554443  34556777777655443322


Q ss_pred             ecccccc---cCCccCCCCCceeeecccCCCCeEEEEEecC-------CceEEEEEeccCCccccCCCeEEEecccceee
Q 016457          254 ENARSLA---SDSWTLDDVDYFVDCHYPGEGENLWVIGGTG-------AGTVGYFPVNYGGAATIGPPEAVLVGGHTAVV  323 (389)
Q Consensus       254 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~-------dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  323 (389)
                      .......   ...|   .......+++++++..+|++....       ...|.+||..+++.      +..+.  +...+
T Consensus       248 ~~~~~~~~~~~~~~---~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~------~~~~~--~~~~~  316 (368)
T d1mdah_         248 AIDGNESGRKADNF---RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------SGPIS--NGHDS  316 (368)
T ss_dssp             CCCSSCTHHHHTTE---EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------EECCE--EEEEE
T ss_pred             ecccccceeeeeee---cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE------eEEec--CCCce
Confidence            1100000   0000   112234577889988665544322       24699999998876      45554  44677


Q ss_pred             eeccCCCcccCCCCCCCcee--EEEecCCCeEEEEeccCCcc
Q 016457          324 RSVLPMPSVQGRPAQSHGIF--GWTGGEDGRLCCWLSDDSSE  363 (389)
Q Consensus       324 ~~~~~~~~~~~~~~s~~~~~--l~s~~~dg~v~iW~~~~~~~  363 (389)
                      ..+         +|+|||+.  ++++..|+.|++||......
T Consensus       317 ~~~---------a~spDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         317 DAI---------IAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             CEE---------EECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             eEE---------EECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            888         99999973  46778899999999987643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.5e-15  Score=130.76  Aligned_cols=264  Identities=12%  Similarity=-0.013  Sum_probs=169.7

Q ss_pred             CCCeEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEec----------CCeEEEEeCCCceeeeeecCCCC-----
Q 016457           19 NVNSIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLS----------TNVVKLYSPVTGQYSGECKGHSS-----   81 (389)
Q Consensus        19 ~~~~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~-----   81 (389)
                      ....|.+||..  +.+.++.+.. ...++|+|||+.|++++.          ++.|.+||..+++.+..+..+..     
T Consensus        44 g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             CcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            33456666764  3445444421 236899999999988653          67899999999988877654322     


Q ss_pred             --cEEEEEEeCCCCCCEEEEEe-cCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCce
Q 016457           82 --TVNQISFSGPSTPHVLHSCS-SDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQ  158 (389)
Q Consensus        82 --~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  158 (389)
                        ....++|+|++  ++|+++. .++.+.+||+.+++.+..+..+.....   +......+++.+.||.+.++++.....
T Consensus       123 g~~p~~~a~SpDG--k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         123 GPRVHIIGNCASS--ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             SCCTTSEEECTTS--SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             cCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCce
Confidence              23468999999  5676665 679999999999999998887643321   111344556666689999998875543


Q ss_pred             eeeee-----ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcccee--------eeccCCceeeEEEecC
Q 016457          159 VACLE-----ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLES--------VINVGTSVGKVGFFGE  225 (389)
Q Consensus       159 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~  225 (389)
                      .....     ..+...+....+.+++. .+.+  ..+.++++++..+.........        ..........++++ +
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~-~  273 (368)
T d1mdah_         198 AAGIVGAQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL-K  273 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE-T
T ss_pred             eeeeeecccccccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc-C
Confidence            32211     12334455667777753 3333  3456667776643211000000        00011223457788 4


Q ss_pred             CCcEEEEEecC---------CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEE
Q 016457          226 TNKHLWCLTHI---------ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVG  296 (389)
Q Consensus       226 ~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~  296 (389)
                      ++..++....+         ..|.+||..+++.+..+..             ...+..++|+|||+.++++++..++.|+
T Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-------------~~~~~~~a~spDG~~~ly~s~~~~~~v~  340 (368)
T d1mdah_         274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-------------GHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-------------EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-------------CCceeEEEECCCCCEEEEEEeCCCCeEE
Confidence            55555444322         2589999999998877763             2567889999999865567888899999


Q ss_pred             EEEeccCCc
Q 016457          297 YFPVNYGGA  305 (389)
Q Consensus       297 i~~~~~~~~  305 (389)
                      +||..+++.
T Consensus       341 v~D~~tgk~  349 (368)
T d1mdah_         341 IYDAASDQD  349 (368)
T ss_dssp             EEESSSCEE
T ss_pred             EEECCCCCE
Confidence            999999876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.67  E-value=1.3e-14  Score=124.35  Aligned_cols=285  Identities=8%  Similarity=-0.081  Sum_probs=174.3

Q ss_pred             EEEEecCCeEEEEeCCCceeeeeecC------------------------------CCCcEEEEEEeCCCCCCEEEE-Ee
Q 016457           53 MAVSLSTNVVKLYSPVTGQYSGECKG------------------------------HSSTVNQISFSGPSTPHVLHS-CS  101 (389)
Q Consensus        53 l~~~~~d~~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~i~~~~~~~~~~l~s-~~  101 (389)
                      +++|+.+|+|++|++.+++.++.+..                              |........+.|||  ++|+. ..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG--r~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG--KYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE--EEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC--CEEEEEcC
Confidence            45666778888888777766655321                              33344555567888  56644 45


Q ss_pred             cCCeEEEEEccCCeEEEEEEc-CCCCeEEEEEeCCCCeEEEee-cCC------------------eEEEEECcCCceeee
Q 016457          102 SDGTIRAWDTRSFHEVWSVTA-GSQEIFCFSFGGSTDYLLAAG-CGS------------------QIQFWDWRNKKQVAC  161 (389)
Q Consensus       102 ~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~------------------~i~iwd~~~~~~~~~  161 (389)
                      .+++|.++|+.+++....+.. ....+..++|+|+++.+++.+ .+.                  .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            788999999999999888775 367899999999888644432 222                  235688888888777


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCCC-----------------------------------------cEEEEecCCC
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVDG-----------------------------------------LICTFDTGGD  200 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------------------------~i~i~d~~~~  200 (389)
                      +.  -......+.++|+|+ ++++.+.+.                                         .+.+++..  
T Consensus       172 I~--v~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~--  246 (441)
T d1qnia2         172 VI--VDGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG--  246 (441)
T ss_dssp             EE--ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS--
T ss_pred             Ee--cCCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc--
Confidence            76  345678999999997 666665432                                         12222221  


Q ss_pred             CCCCccceeeeccCCceeeEEEecCCCcEE-EEEecCCcEEEEEcCCCceeEEeeccccccc-CCccCCCCCceeeeccc
Q 016457          201 INDDDLLESVINVGTSVGKVGFFGETNKHL-WCLTHIETLSIWDWKDGQNVASFENARSLAS-DSWTLDDVDYFVDCHYP  278 (389)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~  278 (389)
                        ....+.. .........+.++ ++++++ +++..+++|.+||+.+....  +.+.-.... .....+..-......|+
T Consensus       247 --~~~v~~~-IPvgksPhGv~vS-PDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~~~~~~~~~~~~~glgplh~~fd  320 (441)
T d1qnia2         247 --ESEFTRY-IPVPKNPHGLNTS-PDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVAEPELGLGPLHTTFD  320 (441)
T ss_dssp             --SCSSEEE-ECCBSSCCCEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSSCGGGGEEECCBCCSCEEEEEEC
T ss_pred             --CCceEEE-EeCCCCccCceEC-CCCCEEEEeCCcCCcEEEEEeehhhhH--hhccCCcceEEEeecccccCcccceec
Confidence              1112222 2334456789999 677765 45667899999998642211  000000000 00000011233556899


Q ss_pred             CCCCeEEEEEecCCceEEEEEeccCCcc----ccCCCeEEE----ecccceeeeeccCCCcccCCCCCCCceeEEEecCC
Q 016457          279 GEGENLWVIGGTGAGTVGYFPVNYGGAA----TIGPPEAVL----VGGHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGED  350 (389)
Q Consensus       279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~----~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~d  350 (389)
                      ++|.  ...+...|..|..|++......    .....+..+    ..||...+.+.         +++|||+||++++.-
T Consensus       321 ~~g~--~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~---------t~~pdGk~l~s~~k~  389 (441)
T d1qnia2         321 GRGN--AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE---------SRDADGKWLVVLSKF  389 (441)
T ss_dssp             SSSE--EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT---------STTCCCCEEEEEESC
T ss_pred             CCce--EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc---------ccCCCCcEEEecCcc
Confidence            9886  6688899999999998532110    001112222    13788888888         999999999999433


Q ss_pred             CeEEEEeccCC
Q 016457          351 GRLCCWLSDDS  361 (389)
Q Consensus       351 g~v~iW~~~~~  361 (389)
                      .+=|++.+...
T Consensus       390 s~dr~~~~g~~  400 (441)
T d1qnia2         390 SKDRFLPVGPL  400 (441)
T ss_dssp             CGGGSCCCSSS
T ss_pred             ccccCcCCCCC
Confidence            22234444433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=1.2e-14  Score=129.41  Aligned_cols=123  Identities=12%  Similarity=0.031  Sum_probs=92.9

Q ss_pred             CCCeEEEEecCc--eeeeee-----c-CcceEEEeecCCCCeEEEEec---------CCeEEEEeCCCceeeeeecCCCC
Q 016457           19 NVNSIKRFGLKN--SIQTNF-----G-DDYVFEIVPKNDWSLMAVSLS---------TNVVKLYSPVTGQYSGECKGHSS   81 (389)
Q Consensus        19 ~~~~i~~w~~~~--~~~~~~-----~-~~~v~~~~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~   81 (389)
                      .++.|.+||...  ....+.     . ...|.++.|+|||++|+.++.         ++.+.|||+.+++. ..+..|..
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~  112 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPN  112 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCT
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCc
Confidence            567899999863  222222     2 467999999999999998854         46789999998874 45777889


Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC------------------CCCeEEEEEeCCCCeEEEee
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG------------------SQEIFCFSFGGSTDYLLAAG  143 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~  143 (389)
                      .+..+.|+|+|  +.+|.. .++.+.+|+..+++.......+                  .+....+.|+|+++.++...
T Consensus       113 ~~~~~~~SPDG--~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         113 NTQWVTWSPVG--HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TEEEEEECSST--TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cccccccccCc--ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            99999999999  688875 5678999999988765543221                  12345678999999998876


Q ss_pred             cC
Q 016457          144 CG  145 (389)
Q Consensus       144 ~d  145 (389)
                      .|
T Consensus       190 ~d  191 (470)
T d2bgra1         190 FN  191 (470)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.60  E-value=3e-13  Score=115.85  Aligned_cols=236  Identities=7%  Similarity=0.024  Sum_probs=159.9

Q ss_pred             eEEEeecCCCCeEEEEe-cCCeEEEEeCCCceeeeeec-CCCCcEEEEEEeCCCCCCEEEEEecCC--------------
Q 016457           41 VFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQYSGECK-GHSSTVNQISFSGPSTPHVLHSCSSDG--------------  104 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg--------------  104 (389)
                      .....++|||++|++.. .+++|.++|+.+++....+. .+...+..++|+|+++..+++..+.+.              
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~  153 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN  153 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence            44555789999887765 57899999999998877664 356789999999998533555544432              


Q ss_pred             ---eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecC------------------------------------
Q 016457          105 ---TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCG------------------------------------  145 (389)
Q Consensus       105 ---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------  145 (389)
                         .+..+|..+.+...++... .....++++|+++++++++.+                                    
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             ccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence               2355788888888777764 567889999999999887653                                    


Q ss_pred             -----CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCC-------CCccceeeecc
Q 016457          146 -----SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDIN-------DDDLLESVINV  213 (389)
Q Consensus       146 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~  213 (389)
                           +.+.+++....+.+..+. . ......+.++|+|+.+++++..+++|.+||+.+...       ....+......
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IP-v-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~  310 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIP-V-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL  310 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEEC-C-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC
T ss_pred             EeCCCCcEEEEcccCCceEEEEe-C-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc
Confidence                 233344444444555554 2 344678999999985567778899999999873210       00111111111


Q ss_pred             CCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----------ceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          214 GTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                      .-.....+|. +++..+.+...|..|..|++...          ..+..+..+       ...+|...+.+.+++|||+ 
T Consensus       311 glgplh~~fd-~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-------y~~GH~~~~~~~t~~pdGk-  381 (441)
T d1qnia2         311 GLGPLHTTFD-GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-------YQPGHNHASLTESRDADGK-  381 (441)
T ss_dssp             CSCEEEEEEC-SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-------SCEEEEEETTTTSTTCCCC-
T ss_pred             ccCcccceec-CCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-------cCCCCCccccccccCCCCc-
Confidence            2223456788 67888888889999999997411          122223211       1123778889999999999 


Q ss_pred             EEEEEe
Q 016457          284 LWVIGG  289 (389)
Q Consensus       284 ~~l~~g  289 (389)
                       ||+++
T Consensus       382 -~l~s~  386 (441)
T d1qnia2         382 -WLVVL  386 (441)
T ss_dssp             -EEEEE
T ss_pred             -EEEec
Confidence             99999

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=1.4e-11  Score=109.20  Aligned_cols=148  Identities=9%  Similarity=0.030  Sum_probs=110.7

Q ss_pred             EEEeecCCCCeEEEEecCCeEEEEeCCCceeeeee-----cCCCCcEEEEEEeCCCCCCEEEEEec---------CCeEE
Q 016457           42 FEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGEC-----KGHSSTVNQISFSGPSTPHVLHSCSS---------DGTIR  107 (389)
Q Consensus        42 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~---------dg~i~  107 (389)
                      ..+.|.+++.++..  .++.+.+||+.+++....+     ..|...|.++.|+||+  ++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg--~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC--CEEEEEECCcceeeeccCceEE
Confidence            35779999987764  4788999999999765544     4456789999999999  78887753         56788


Q ss_pred             EEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeec-----------------ccCCe
Q 016457          108 AWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEES-----------------HVEDV  170 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~v  170 (389)
                      +||+.+++. ..+..+...+..+.|+|++..++.. .++.+.+|+..+++..+....+                 ..+..
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999998774 4567778899999999999998885 5689999999988765443211                 12334


Q ss_pred             eEEEEecCCCCeEEEEeCCCc-EEEEe
Q 016457          171 TQVHFVPNNQNKVVSASVDGL-ICTFD  196 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~-i~i~d  196 (389)
                      ..+.|+|+|+ .|+....|.. +..|+
T Consensus       174 ~~~~wSPDGk-~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         174 SALWWSPNGT-FLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             BCEEECTTSS-EEEEEEEECTTCCEEE
T ss_pred             cccEECCCCC-ccceeEecCCcCceEE
Confidence            6688999997 8887765433 44433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=3.3e-09  Score=87.66  Aligned_cols=232  Identities=11%  Similarity=0.044  Sum_probs=154.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC--e
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF--H  115 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~  115 (389)
                      ...+..+++.|||+++++...+++|..|+.. ++. ..+......+.+++|.+++  +++++...++.+..|+....  .
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG--~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCC--CeEEEecCCceEEEEEecccccc
Confidence            4467889999999999998889999999865 432 3344456789999999999  68888888888888876543  2


Q ss_pred             EEEEEE-cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeee---------cccCCeeEEEEecCCCCeEEE
Q 016457          116 EVWSVT-AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEE---------SHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       116 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ...... ........+++.+++..+++...++.+..+|...+........         ........+.+..+  .++++
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~~  180 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVS  180 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEEE
T ss_pred             eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceeee
Confidence            222222 2246688999997776666556688898888876643322210         11123456666653  47777


Q ss_pred             EeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCcc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWT  265 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  265 (389)
                      .+..+.|..++.......  ..............+++. +++.++++...++.|..++.. ++.........        
T Consensus       181 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~--------  248 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKP--GEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ--------  248 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCB--CCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECTT-CCEEEEECGGG--------
T ss_pred             cCCCCeEEeccccccccc--cccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECCC-CCEEEEEecCC--------
Confidence            888899999998743211  112222334456789999 778877777788999999865 44333322211        


Q ss_pred             CCCCCceeeecc---cCCCCeEEEEEe
Q 016457          266 LDDVDYFVDCHY---PGEGENLWVIGG  289 (389)
Q Consensus       266 ~~~~~~i~~~~~---~~~~~~~~l~~g  289 (389)
                        .....++++|   .+|++.+|+.+.
T Consensus       249 --~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         249 --GVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             --TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             --CCCCceEEEEcCCCCCCCEEEEECC
Confidence              2245788999   667776655443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.8e-09  Score=84.55  Aligned_cols=232  Identities=9%  Similarity=0.008  Sum_probs=135.5

Q ss_pred             eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCC---eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCC
Q 016457           61 VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDG---TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTD  137 (389)
Q Consensus        61 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (389)
                      .|.|.|.+ |.....+..+...+...+|+|||  +.||......   .+.+.+...+... .+..+........|+|++.
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDG--k~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG--SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCC--CEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCC
Confidence            57888876 44444444456778899999999  6777654333   3666666555443 4455578889999999999


Q ss_pred             eEEEeec-CCeEEE--EECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCc--EEEEecCCCCCCCccceeeec
Q 016457          138 YLLAAGC-GSQIQF--WDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGL--ICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       138 ~l~~~~~-d~~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      .++.... ++...+  +...........  ..........+++++...+++...++.  |...++.+.     .......
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-----~~~~~~~  168 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-----APQRITW  168 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----CCEECCC
T ss_pred             eeeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeeecccc-----cceeeec
Confidence            9888765 333333  333333333222  244445566777777645555555665  445555532     2233334


Q ss_pred             cCCceeeEEEecCCCcEEEEEec-CCc--EEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE-
Q 016457          213 VGTSVGKVGFFGETNKHLWCLTH-IET--LSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG-  288 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-  288 (389)
                      .........|+ ++++.++..+. .+.  +.+.+...+.. ....             +........|+|||+.+++.+ 
T Consensus       169 ~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-------------~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         169 EGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-------------STFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             SSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-------------CSSSCEEEEECTTSSEEEEEEE
T ss_pred             ccccccccccc-cccceeEEEeecCCceeeeEeecccccc-eEee-------------cCccccceEECCCCCEEEEEEc
Confidence            45566777888 55665555544 444  44445444432 2222             224556778999999543222 


Q ss_pred             ecCCceEEEEEeccCCccccCCCeEEEecccceeeeec
Q 016457          289 GTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSV  326 (389)
Q Consensus       289 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  326 (389)
                      -+....|+++++..+..       ..+. ...+.+...
T Consensus       234 ~~~~~~l~~~~~dg~~~-------~~lt-~~~g~~~~p  263 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRFK-------ARLP-ATDGQVKFP  263 (269)
T ss_dssp             ETTEEEEEEEETTSCCE-------EECC-CSSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCE-------EEEe-CCCCcEEeE
Confidence            22345788999987654       4444 334455555

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=6.6e-09  Score=84.70  Aligned_cols=239  Identities=13%  Similarity=0.108  Sum_probs=163.2

Q ss_pred             ceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC------CCCcEEEEEEeCCCCCCEEEE-EecCCeEEEEEcc
Q 016457           40 YVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG------HSSTVNQISFSGPSTPHVLHS-CSSDGTIRAWDTR  112 (389)
Q Consensus        40 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~~l~s-~~~dg~i~iwd~~  112 (389)
                      ....++++++++++++-..++.|++||.+ |+.+..+..      ....-..+++..+.. ..+++ .+.++.|..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccccc-ccceeccCCccccccccc-
Confidence            46799999999887777778999999965 776665532      112345566665542 34443 345567777775 


Q ss_pred             CCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee-ecccCCeeEEEEecCCCCeEEEEeCCC
Q 016457          113 SFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE-ESHVEDVTQVHFVPNNQNKVVSASVDG  190 (389)
Q Consensus       113 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~  190 (389)
                      .++....+... ......+++.+++..+++....+.+.+++. +++.+.++. ..+......+++.+++. ++++....+
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~  178 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAH  178 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGT
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee-EEeeecccc
Confidence            46666666433 456788999977777776666788888885 456666553 13456678899999984 888888899


Q ss_pred             cEEEEecCCCCCCCccceeee--ccCCceeeEEEecCCCcEEEEEec-CCcEEEEEcCCCceeEEeecccccccCCccCC
Q 016457          191 LICTFDTGGDINDDDLLESVI--NVGTSVGKVGFFGETNKHLWCLTH-IETLSIWDWKDGQNVASFENARSLASDSWTLD  267 (389)
Q Consensus       191 ~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
                      .|++||....     .+..+.  +.......+++. ++++++++-.. +..|.+|+. +++.+..+....          
T Consensus       179 ~V~~~d~~G~-----~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~----------  241 (279)
T d1q7fa_         179 CVKVFNYEGQ-----YLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQ-DGQLISALESKV----------  241 (279)
T ss_dssp             EEEEEETTCC-----EEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS----------
T ss_pred             ceeeeecCCc-----eeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC----------
Confidence            9999998742     232221  223456789998 67776666544 447999984 588777765422          


Q ss_pred             CCCceeeecccCCCCeEEEEEecCCceEEEEEeccC
Q 016457          268 DVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      .......+++.++|.  ++++ +.+..|++|.....
T Consensus       242 ~~~~p~~vav~~dG~--l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         242 KHAQCFDVALMDDGS--VVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             CCSCEEEEEEETTTE--EEEE-ETTTEEEEEECSCC
T ss_pred             CCCCEeEEEEeCCCc--EEEE-eCCCeEEEEEeeee
Confidence            224578899999985  4444 46889999988754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.29  E-value=1.5e-09  Score=92.16  Aligned_cols=288  Identities=10%  Similarity=0.034  Sum_probs=154.0

Q ss_pred             EEEEec--CCeEEEEe--CCCcee--eeee-cCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCC-eEEEEE-EcC
Q 016457           53 MAVSLS--TNVVKLYS--PVTGQY--SGEC-KGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSF-HEVWSV-TAG  123 (389)
Q Consensus        53 l~~~~~--d~~i~iw~--~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~-~~~  123 (389)
                      |++|+.  .+.|.++.  .++++.  +... ......+.-|+|++++  ++|+++.. +.+..|.+... ...... ...
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~--~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER--KNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS--SEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC--CEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            555543  44565554  344433  1221 1234556779999999  67777654 56788877643 222221 112


Q ss_pred             CCCeEEEEEeCCCCeEEEeec---CCeEEEEECcCC-c---------------eeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          124 SQEIFCFSFGGSTDYLLAAGC---GSQIQFWDWRNK-K---------------QVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       124 ~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~-~---------------~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      ......++++++++.+++...   .+.|..+.+... .               ............+.++.|+|+|+ +++
T Consensus        82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~-~l~  160 (365)
T d1jofa_          82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLY  160 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEE
T ss_pred             CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC-EEE
Confidence            344567778877775443322   455655543211 0               01111111223478999999997 666


Q ss_pred             EEe-CCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCceeE--Eeecccc
Q 016457          185 SAS-VDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQNVA--SFENARS  258 (389)
Q Consensus       185 ~~~-~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~~  258 (389)
                      ++. ....|.+|+...... .......  .........++|+ ++++++++.. .+++|.+|++...+...  .......
T Consensus       161 v~d~g~d~v~~~~~~~~g~-~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~  238 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             EEETTTTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             EeeCCCCEEEEEEccCCCc-eeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence            554 355788888663211 1111111  1234678899999 6677665544 57899999987654332  2211111


Q ss_pred             cccC-----CccCCCCCceeeecccCCCCeEEEEEecC----CceEEEEEeccCCccccCCCeEEEeccc-----ceeee
Q 016457          259 LASD-----SWTLDDVDYFVDCHYPGEGENLWVIGGTG----AGTVGYFPVNYGGAATIGPPEAVLVGGH-----TAVVR  324 (389)
Q Consensus       259 ~~~~-----~~~~~~~~~i~~~~~~~~~~~~~l~~g~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~h-----~~~v~  324 (389)
                      ....     .-...+......+.++|+|+.+|+...+.    .+.|..|++.....      +......+     ...-+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~------~~~~~~~~~~~~~G~~p~  312 (365)
T d1jofa_         239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS------IEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC------EEEEEEEEECSSCCTTCC
T ss_pred             ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc------eeeEeEeeEEEcCCCCcc
Confidence            1100     00111334456789999999443322222    23477777764322      11111000     11122


Q ss_pred             eccCCCcccCCCCCC-CceeEEEe-cCCCeEEEEeccCC
Q 016457          325 SVLPMPSVQGRPAQS-HGIFGWTG-GEDGRLCCWLSDDS  361 (389)
Q Consensus       325 ~~~~~~~~~~~~~s~-~~~~l~s~-~~dg~v~iW~~~~~  361 (389)
                      .+         +++| +|++|+.+ ..++.|.+|+++..
T Consensus       313 ~i---------~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         313 AV---------SPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CE---------EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EE---------EecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            23         8887 78877665 57899999998755

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.8e-09  Score=87.10  Aligned_cols=237  Identities=7%  Similarity=-0.062  Sum_probs=148.0

Q ss_pred             cceEEEeecCCCCeEEEEe-cCCeEEEEeCCCce-eeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           39 DYVFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQ-YSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      -.-.+++++++|++.++.. ..+.+..++..... ......+ ......+++.+++  .++++....+.+++++..+...
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g--~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAG--TVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTC--CEEEEETTTEEEEECTTCSCCE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCC--CEEEeeeeeceeeeeeecccee
Confidence            3457999999998666544 45777777655332 2222222 2345678999988  6777766666676666555554


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEe
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFD  196 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  196 (389)
                      +..... .....++++.+++..+++-..+..+..++........... ........+++.+++. ++++...++.|..+|
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLE  167 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCC-EEEEEGGGTEEEEEC
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCC-Eeeeccccccccccc
Confidence            433332 3567899999777655554446778887765543322221 2234567899999985 888888888999999


Q ss_pred             cCCCCCCCccceee-eccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeee
Q 016457          197 TGGDINDDDLLESV-INVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDC  275 (389)
Q Consensus       197 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (389)
                      ..+..     .... ...-.....+++. +++.++++....+.|..++.... ....+...           .......+
T Consensus       168 ~~~~~-----~~~~~~~~~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~~~-~~~~~~~~-----------~~~~P~~i  229 (260)
T d1rwia_         168 AESNN-----QVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGST-TSTVLPFT-----------GLNTPLAV  229 (260)
T ss_dssp             TTTCC-----EEECCCSSCCSEEEEEEC-TTCCEEEEETTTTEEEEECTTCS-CCEECCCC-----------SCCCEEEE
T ss_pred             cccce-----eeeeeccccCCCccceee-eeeeeeeeecCCCEEEEEeCCCC-eEEEEccC-----------CCCCeEEE
Confidence            87432     1111 1223456789998 66777777777788888876533 22232211           22456789


Q ss_pred             cccCCCCeEEEEEecCCceEEEEEec
Q 016457          276 HYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       276 ~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +++++|.  ++++-..+++|+.++..
T Consensus       230 ~~d~~g~--l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         230 AVDSDRT--VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EECTTCC--EEEEEGGGTEEEEECCC
T ss_pred             EEeCCCC--EEEEECCCCEEEEEeCC
Confidence            9999886  55665566767766544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.2e-09  Score=88.23  Aligned_cols=236  Identities=9%  Similarity=-0.009  Sum_probs=143.3

Q ss_pred             cEEEEEEeCCCCCCEEEEE-ecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee
Q 016457           82 TVNQISFSGPSTPHVLHSC-SSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA  160 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  160 (389)
                      .-..|++.+++  +++++. +..+.+..++...................+++++++..+++....+.+++++-.+...+.
T Consensus        15 ~P~~vavd~dG--~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          15 SPSGVAVDSAG--NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CEEEEEECTTC--CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEcCCC--CEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            45789999998  555554 455777777655433222111113456788999776654444445566666555444443


Q ss_pred             eeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEE
Q 016457          161 CLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLS  240 (389)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~  240 (389)
                      ...  .......+++.+++. ++++-..+..+..++.....   .... ..........+++. +++.++++...++.|.
T Consensus        93 ~~~--~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~---~~~~-~~~~~~~p~~i~~~-~~g~~~v~~~~~~~i~  164 (260)
T d1rwia_          93 PFD--GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVL-PFTGLNDPDGVAVD-NSGNVYVTDTDNNRVV  164 (260)
T ss_dssp             CCC--SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSS---CEEC-CCCSCCSCCEEEEC-TTCCEEEEEGGGTEEE
T ss_pred             eee--eeeecccccccccce-eEeeccccccccccccccce---eeee-eecccCCcceeeec-CCCCEeeecccccccc
Confidence            332  335578999999984 77777777778888876432   1111 11112345688888 5777888888888999


Q ss_pred             EEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCccccCCCeEEEecccc
Q 016457          241 IWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHT  320 (389)
Q Consensus       241 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~  320 (389)
                      .++....... .+...           .......+++.++|+  ++++....+.|..++......       ..+....-
T Consensus       165 ~~d~~~~~~~-~~~~~-----------~~~~p~gi~~d~~g~--l~vsd~~~~~i~~~~~~~~~~-------~~~~~~~~  223 (260)
T d1rwia_         165 KLEAESNNQV-VLPFT-----------DITAPWGIAVDEAGT--VYVTEHNTNQVVKLLAGSTTS-------TVLPFTGL  223 (260)
T ss_dssp             EECTTTCCEE-ECCCS-----------SCCSEEEEEECTTCC--EEEEETTTTEEEEECTTCSCC-------EECCCCSC
T ss_pred             ccccccceee-eeecc-----------ccCCCccceeeeeee--eeeeecCCCEEEEEeCCCCeE-------EEEccCCC
Confidence            9997654333 22211           225567899999987  677777788888887654432       22211222


Q ss_pred             eeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEe
Q 016457          321 AVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWL  357 (389)
Q Consensus       321 ~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~  357 (389)
                      .....|         +++++|.++++-..+++|+..+
T Consensus       224 ~~P~~i---------~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         224 NTPLAV---------AVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCEEEE---------EECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCeEEE---------EEeCCCCEEEEECCCCEEEEEe
Confidence            334566         8899998877766666555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=1.6e-08  Score=82.35  Aligned_cols=240  Identities=12%  Similarity=0.106  Sum_probs=161.2

Q ss_pred             cEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC------CCCeEEEEEeCCCCeEEEeec--CCeEEEEEC
Q 016457           82 TVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG------SQEIFCFSFGGSTDYLLAAGC--GSQIQFWDW  153 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~  153 (389)
                      ....|++.+++  +++++-..+..|++||.. ++.+..+...      ......+++.++....++...  ++.|..++.
T Consensus        24 ~P~gvavd~dg--~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQN--DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTC--CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCC--CEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            45789999988  677776778899999964 7777766432      123456666655555444433  568888875


Q ss_pred             cCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceee--eccCCceeeEEEecCCCcEEE
Q 016457          154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESV--INVGTSVGKVGFFGETNKHLW  231 (389)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~  231 (389)
                       .++....+..........+++.+++. ++++....+.+.+++....     .+..+  ..+......+++. +++.+++
T Consensus       101 -~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~~~i~~d-~~g~i~v  172 (279)
T d1q7fa_         101 -YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-----VLHKFGCSKHLEFPNGVVVN-DKQEIFI  172 (279)
T ss_dssp             -TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-----EEEEEECTTTCSSEEEEEEC-SSSEEEE
T ss_pred             -cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCc-----eeecccccccccccceeeec-cceeEEe
Confidence             56666666434456678999999985 7887777788888887632     22222  2234556778887 6778888


Q ss_pred             EEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEe-cCCceEEEEEeccCCccccCC
Q 016457          232 CLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGG-TGAGTVGYFPVNYGGAATIGP  310 (389)
Q Consensus       232 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g-~~dg~i~i~~~~~~~~~~~~~  310 (389)
                      +....+.|++||.. ++.+.++....          .......+++.++|+  ++++- ..++.|.+|+.. ++.     
T Consensus       173 ~d~~~~~V~~~d~~-G~~~~~~g~~g----------~~~~P~giavD~~G~--i~Vad~~~~~~v~~f~~~-G~~-----  233 (279)
T d1q7fa_         173 SDNRAHCVKVFNYE-GQYLRQIGGEG----------ITNYPIGVGINSNGE--ILIADNHNNFNLTIFTQD-GQL-----  233 (279)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCTT----------TSCSEEEEEECTTCC--EEEEECSSSCEEEEECTT-SCE-----
T ss_pred             eeccccceeeeecC-Cceeeeecccc----------cccCCcccccccCCe--EEEEECCCCcEEEEECCC-CCE-----
Confidence            88888999999964 66666664211          335578899999997  45554 345679999843 333     


Q ss_pred             CeEEEec-ccceeeeeccCCCcccCCCCCCCceeEEEecCCCeEEEEeccCCc
Q 016457          311 PEAVLVG-GHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDSS  362 (389)
Q Consensus       311 ~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~dg~v~iW~~~~~~  362 (389)
                       +..+.. ........|         ++.+||.++++. .++.|++|+.....
T Consensus       234 -~~~~~~~~~~~~p~~v---------av~~dG~l~V~~-~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         234 -ISALESKVKHAQCFDV---------ALMDDGSVVLAS-KDYRLYIYRYVQLA  275 (279)
T ss_dssp             -EEEEEESSCCSCEEEE---------EEETTTEEEEEE-TTTEEEEEECSCCC
T ss_pred             -EEEEeCCCCCCCEeEE---------EEeCCCcEEEEe-CCCeEEEEEeeeec
Confidence             344431 111234566         889999876654 68999999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.28  E-value=1.3e-08  Score=84.21  Aligned_cols=256  Identities=9%  Similarity=0.007  Sum_probs=152.7

Q ss_pred             cEEEEEEeCCCCCCEEEEEec-------CCeEEEEEccCCeEEEEEEcC----CCCeEEEEEeCCCCeEEEeecCCeEEE
Q 016457           82 TVNQISFSGPSTPHVLHSCSS-------DGTIRAWDTRSFHEVWSVTAG----SQEIFCFSFGGSTDYLLAAGCGSQIQF  150 (389)
Q Consensus        82 ~v~~i~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i  150 (389)
                      ....++|.+++  +++++...       +|+|..||..++.........    ......++|.++++.++++...+.|..
T Consensus        19 g~EGpa~d~dG--~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNG--DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTS--CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCC--CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            34567899998  56655322       467888998877654332211    234678999999988888887778888


Q ss_pred             EECcCCceeeeeeeccc---CCeeEEEEecCCCCeEEEEeC---------------CCcEEEEecCCCCCCCccceeeec
Q 016457          151 WDWRNKKQVACLEESHV---EDVTQVHFVPNNQNKVVSASV---------------DGLICTFDTGGDINDDDLLESVIN  212 (389)
Q Consensus       151 wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~  212 (389)
                      +|...............   ...+.+++.++|. +.++-..               .|.|..++...      .......
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg------~~~~~~~  169 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG------QMIQVDT  169 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS------CEEEEEE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC------ceeEeeC
Confidence            88765433221110111   1357799999995 7666432               23454444431      1222222


Q ss_pred             cCCceeeEEEecCCC----cEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEE
Q 016457          213 VGTSVGKVGFFGETN----KHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       213 ~~~~i~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                      .-...+.++|++...    .++++-+..+.|..|++.....+..-.......     ..+....-.+++..+|+  +.++
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~~~~pdGiavD~~Gn--lyVa  242 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-----GTHEGGADGMDFDEDNN--LLVA  242 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-----CCSSCEEEEEEEBTTCC--EEEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc-----ccccccceeeEEecCCc--EEEE
Confidence            223446788984322    244555677889998876443322111000000     00223456789999987  5556


Q ss_pred             ecCCceEEEEEeccCCccccCCCeEEEecccceeeeeccCCCcccCCCCCCCce-eEEEecCCCeEEEEeccCC-cccch
Q 016457          289 GTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAVVRSVLPMPSVQGRPAQSHGI-FGWTGGEDGRLCCWLSDDS-SEINR  366 (389)
Q Consensus       289 g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~v~iW~~~~~-~~~~~  366 (389)
                      ....+.|.+|+.+.++.      +..+. .......++         +|.+|++ ..++.+.+|.|...++... .+.++
T Consensus       243 ~~~~g~I~~~dp~~g~~------~~~i~-~p~~~~t~~---------afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~~~  306 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQP------KMRIR-CPFEKPSNL---------HFKPQTKTIFVTEHENNAVWKFEWQRNGKKQYC  306 (314)
T ss_dssp             EETTTEEEEECTTCBSC------SEEEE-CSSSCEEEE---------EECTTSSEEEEEETTTTEEEEEECSSCBCCCGG
T ss_pred             EcCCCEEEEEeCCCCEE------EEEEE-CCCCCEEEE---------EEeCCCCEEEEEECCCCcEEEEECCCCChhhhc
Confidence            55678899999887664      34444 344556777         8999986 5577777888877777655 45555


Q ss_pred             hhh
Q 016457          367 SWI  369 (389)
Q Consensus       367 ~~~  369 (389)
                      +.+
T Consensus       307 ~~~  309 (314)
T d1pjxa_         307 ETL  309 (314)
T ss_dssp             GSC
T ss_pred             ccc
Confidence            543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=9e-09  Score=87.33  Aligned_cols=276  Identities=8%  Similarity=-0.014  Sum_probs=153.9

Q ss_pred             CCCCeEEEEecCc------eeeeee--cCcceEEEeecCCCCeEEEEecCCeEEEEeCCC-ceeeeee-cCCCCcEEEEE
Q 016457           18 DNVNSIKRFGLKN------SIQTNF--GDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT-GQYSGEC-KGHSSTVNQIS   87 (389)
Q Consensus        18 ~~~~~i~~w~~~~------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~-~~~~~~v~~i~   87 (389)
                      +..+.|..+..+.      .+....  ....+.-|+|+|+++.|+++. .+.+..|.+.. +...... .........+.
T Consensus        11 t~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~   89 (365)
T d1jofa_          11 TPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRAND   89 (365)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred             cCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEE
Confidence            4456677666542      111211  244567799999999998876 46678887653 2222211 11223345567


Q ss_pred             EeCCCCCCEEEEEe-cCCeEEEEEccC-------------Ce---EEEEEE-cCCCCeEEEEEeCCCCeEEEeec-CCeE
Q 016457           88 FSGPSTPHVLHSCS-SDGTIRAWDTRS-------------FH---EVWSVT-AGSQEIFCFSFGGSTDYLLAAGC-GSQI  148 (389)
Q Consensus        88 ~~~~~~~~~l~s~~-~dg~i~iwd~~~-------------~~---~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i  148 (389)
                      +++++...+++++. ..++|..+.+..             +.   ...... .....+.++.|+|++++++++.. ...|
T Consensus        90 ~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v  169 (365)
T d1jofa_          90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL  169 (365)
T ss_dssp             TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEE
Confidence            77777211233322 234454443321             11   111111 12345789999999999999876 5688


Q ss_pred             EEEECcCCcee---eeee-ecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCcc-ceee-------------
Q 016457          149 QFWDWRNKKQV---ACLE-ESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDL-LESV-------------  210 (389)
Q Consensus       149 ~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~-------------  210 (389)
                      .+|+......+   .... .........++|+|+++...++...++.|.+|++......... ....             
T Consensus       170 ~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (365)
T d1jofa_         170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred             EEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccc
Confidence            88876543222   1111 1234568899999999744455667899999999754211100 0000             


Q ss_pred             -eccCCceeeEEEecCCCcEEEEEec-CC-----cEEEEEcCCCceeEEeec-ccccccCCccCCCCCceeeecccC-CC
Q 016457          211 -INVGTSVGKVGFFGETNKHLWCLTH-IE-----TLSIWDWKDGQNVASFEN-ARSLASDSWTLDDVDYFVDCHYPG-EG  281 (389)
Q Consensus       211 -~~~~~~i~~~~~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (389)
                       .........+.++ +++++|+++.. +.     .|..|++.....+..... .....       .......++++| +|
T Consensus       250 ~~~~~~~~~~i~~s-pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-------~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         250 TGKGLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------SGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TSSBSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------CCTTCCCEEECTTCT
T ss_pred             cccccCCccceEEC-CCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc-------CCCCccEEEecCCCC
Confidence             0111234567888 78888877643 22     377777765433222111 11000       124456788998 66


Q ss_pred             CeEEEEEecCCceEEEEEeccC
Q 016457          282 ENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       282 ~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +. +++++..++.|.+|++...
T Consensus       322 ~~-l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         322 EW-MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TE-EEEECSSSCEEEEEEEETT
T ss_pred             CE-EEEEeCCCCeEEEEEEeCC
Confidence            62 3455667899999998754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.25  E-value=7.1e-08  Score=80.03  Aligned_cols=239  Identities=6%  Similarity=-0.036  Sum_probs=151.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEec----CCeEEEEEccC
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSS----DGTIRAWDTRS  113 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~iwd~~~  113 (389)
                      .-.+-.++|.++|++.++-...+.|..|+.++++....+.........+++.+++  .++++...    .+.+...+...
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG--~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG--RLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS--CEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC--CEEEEecCCCccceeEEEEcCCC
Confidence            3345689999999877777778999999988776665555556678899999998  56666433    23455555555


Q ss_pred             CeEEEEEEcC--CCCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEE
Q 016457          114 FHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVS  185 (389)
Q Consensus       114 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  185 (389)
                      ..........  ......+++.+++...++...      .+.+..++... +.+..+. ..-...+.|+|+|+++.++++
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~-~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPII-QNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEE-EEESSEEEEEECTTSSEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEe-eccceeeeeeeccccceEEEe
Confidence            4444333321  345788999988764444322      23455555443 3333333 233446789999999635566


Q ss_pred             EeCCCcEEEEecCCCCCCCcccee----eeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeeccccccc
Q 016457          186 ASVDGLICTFDTGGDINDDDLLES----VINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLAS  261 (389)
Q Consensus       186 ~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  261 (389)
                      -+..+.|..||+............    ..........+++. .++++.++....+.|.+||. +++.+..+....... 
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~-  271 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE-  271 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG-
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC-
Confidence            677889999998743211111111    11112345678998 77888888888999999995 688887775321100 


Q ss_pred             CCccCCCCCceeeecccCCCCeEEEEE
Q 016457          262 DSWTLDDVDYFVDCHYPGEGENLWVIG  288 (389)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~~~~~~~l~~  288 (389)
                           .+...+.+++|.+.+..+++.+
T Consensus       272 -----~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 -----GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -----TCSCBCCEEEECTTSCEEEEEE
T ss_pred             -----CcCceeeeEEEeCCCCEEEEEc
Confidence                 1335678899999887654444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.25  E-value=1.9e-08  Score=83.23  Aligned_cols=245  Identities=11%  Similarity=0.043  Sum_probs=154.0

Q ss_pred             cceEEEeecCCCCeEEEEec-------CCeEEEEeCCCceeeeeecC----CCCcEEEEEEeCCCCCCEEEEEecCCeEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLS-------TNVVKLYSPVTGQYSGECKG----HSSTVNQISFSGPSTPHVLHSCSSDGTIR  107 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  107 (389)
                      ...-.++|.++|++.++...       +++|..||..+++.......    ....-..++|.+++  ..++++...+.|.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg--~~l~vad~~~~i~   95 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEEETTTEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC--CEEEEEECCCeEE
Confidence            34557789999987776433       46799999887754433221    12235689999998  6788887777788


Q ss_pred             EEEccCCeEEEEEEcCC----CCeEEEEEeCCCCeEEEeec---------------CCeEEEEECcCCceeeeeeecccC
Q 016457          108 AWDTRSFHEVWSVTAGS----QEIFCFSFGGSTDYLLAAGC---------------GSQIQFWDWRNKKQVACLEESHVE  168 (389)
Q Consensus       108 iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~  168 (389)
                      ..+..............    ...+.+++.+++...++-..               .|.|..++.. ++......  .-.
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~--~~~  172 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQ  172 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EES
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC--Ccc
Confidence            88876544322111111    13577999987766555321               2345555432 33332222  333


Q ss_pred             CeeEEEEecCCC----CeEEEEeCCCcEEEEecCCCCCCCc--cceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEE
Q 016457          169 DVTQVHFVPNNQ----NKVVSASVDGLICTFDTGGDINDDD--LLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSI  241 (389)
Q Consensus       169 ~v~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i  241 (389)
                      ..+.++|+|++.    .++++-+..+.|..||+........  ....+.. .......+++. .++++.++....+.|.+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEE
Confidence            457899998763    2555667788899998863211000  0111111 12235678888 77887777778899999


Q ss_pred             EEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          242 WDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ||...++.+..+..            ......+++|.|+++.+| ++.+.+|.|..+++..
T Consensus       252 ~dp~~g~~~~~i~~------------p~~~~t~~afg~d~~~ly-Vt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         252 FGPDGGQPKMRIRC------------PFEKPSNLHFKPQTKTIF-VTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ECTTCBSCSEEEEC------------SSSCEEEEEECTTSSEEE-EEETTTTEEEEEECSS
T ss_pred             EeCCCCEEEEEEEC------------CCCCEEEEEEeCCCCEEE-EEECCCCcEEEEECCC
Confidence            99887777666654            225678899999987654 5666788888888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.6e-08  Score=79.69  Aligned_cols=233  Identities=9%  Similarity=-0.038  Sum_probs=140.2

Q ss_pred             eEEEEecC--ceeeeeecCcceEEEeecCCCCeEEEEecCC---eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCE
Q 016457           22 SIKRFGLK--NSIQTNFGDDYVFEIVPKNDWSLMAVSLSTN---VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHV   96 (389)
Q Consensus        22 ~i~~w~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~   96 (389)
                      .|.+-|..  +......+...+..-+|||||+.||......   .+.+.+...+... .+..+........|+|++  ..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg--~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SK   96 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCC--Ce
Confidence            56666664  3333344477788999999999999876533   5777777655543 444467788899999999  55


Q ss_pred             EEEEe-cCCeEEEE--EccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CC--eEEEEECcCCceeeeeeecccCCe
Q 016457           97 LHSCS-SDGTIRAW--DTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GS--QIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        97 l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      ++... .++...++  ......... ............+++.+..++..+. ++  .|.+.++..+......  ......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~--~~~~~~  173 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--WEGSQN  173 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--CSSSEE
T ss_pred             eeEeeecCCccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeee--cccccc
Confidence            55544 34333333  322222222 2223444555667767766666554 44  5666666655433332  355667


Q ss_pred             eEEEEecCCCCeEEEE-eCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCC
Q 016457          171 TQVHFVPNNQNKVVSA-SVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKD  246 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~  246 (389)
                      ....|+|++. .++.. ...+...+|.....    .................|+ |+|+.|+..+..   ..|+++++..
T Consensus       174 ~~~~~spdg~-~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~p~~S-PDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         174 QDADVSSDGK-FMVMVSSNGGQQHIAKQDLA----TGGVQVLSSTFLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEECTTSS-EEEEEEECSSCEEEEEEETT----TCCEEECCCSSSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccc-eeEEEeecCCceeeeEeecc----cccceEeecCccccceEEC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence            7889999997 55554 44455555544422    1123334455566778899 677776654433   3788999876


Q ss_pred             CceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          247 GQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      +.. ..+..            ....+...+|+|
T Consensus       248 ~~~-~~lt~------------~~g~~~~p~WSP  267 (269)
T d2hqsa1         248 RFK-ARLPA------------TDGQVKFPAWSP  267 (269)
T ss_dssp             CCE-EECCC------------SSSEEEEEEECC
T ss_pred             CCE-EEEeC------------CCCcEEeEEeCC
Confidence            554 34443            235667788888

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.22  E-value=5.2e-09  Score=86.45  Aligned_cols=213  Identities=11%  Similarity=0.006  Sum_probs=136.8

Q ss_pred             ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEE
Q 016457           70 GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQ  149 (389)
Q Consensus        70 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  149 (389)
                      .+.+..+... ..+..+++.|++  +++++...+++|..|+... +. ..+......+.+++|+++++.+++...++.+.
T Consensus        18 ~~v~~~~p~~-~~~e~iAv~pdG--~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          18 AKIITSFPVN-TFLENLASAPDG--TIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTS--CEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             ccEEEECCCC-CCcCCEEECCCC--CEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            3444555432 357889999999  7899988899888888653 33 33444567899999999988777776788888


Q ss_pred             EEECcCCce-eeee-eecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCC----ccceee--eccCCceeeEE
Q 016457          150 FWDWRNKKQ-VACL-EESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDD----DLLESV--INVGTSVGKVG  221 (389)
Q Consensus       150 iwd~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~--~~~~~~i~~~~  221 (389)
                      .++...... ...+ ..........+++.+++. ++++.+.++.+..+|..++....    ......  .........+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            887664322 1121 113456688999999994 88888888889888887542000    000000  01112345566


Q ss_pred             EecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEec
Q 016457          222 FFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVN  301 (389)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~  301 (389)
                      +.  .+.++++.+..+.|..++..............          .......+++.++|+  +.++...++.|..++..
T Consensus       172 ~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~pdgia~d~dG~--l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         172 RF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----------EQTNIDDFAFDVEGN--LYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----------ESCCCSSEEEBTTCC--EEEECBTTCCEEEECTT
T ss_pred             cc--CCceeeecCCCCeEEecccccccccccccccc----------CCCCCcceEECCCCC--EEEEEcCCCcEEEECCC
Confidence            65  34566777778899888876543322111100          124456799999997  56666678888888765


Q ss_pred             c
Q 016457          302 Y  302 (389)
Q Consensus       302 ~  302 (389)
                      .
T Consensus       238 G  238 (302)
T d2p4oa1         238 R  238 (302)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.12  E-value=2.2e-07  Score=75.98  Aligned_cols=226  Identities=8%  Similarity=-0.051  Sum_probs=148.7

Q ss_pred             EEeecCCC-CeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           43 EIVPKNDW-SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        43 ~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      +..|++.. .+..+--..+.|..||..+++.. .+. ....+.++++.+++   .|+.++.+ .|.++|..+++......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg---~l~va~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS---KQLIASDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT---EEEEEETT-EEEEEETTTCCEEEEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCC---CEEEEEeC-ccEEeecccceeeEEee
Confidence            45588754 44444445789999999887643 332 34568899998887   44445555 48899999887654333


Q ss_pred             cC----CCCeEEEEEeCCCCeEEEeec----CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEE
Q 016457          122 AG----SQEIFCFSFGGSTDYLLAAGC----GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLIC  193 (389)
Q Consensus       122 ~~----~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  193 (389)
                      ..    ...++.+.+.|++...++...    .+.-.+|.+..++......  .-...+.++|++++..++++-+..+.|.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEeecccceee
Confidence            21    235788999988776555443    2355667776665544443  3345678999999975666777788999


Q ss_pred             EEecCCCCCCC--cc--ceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          194 TFDTGGDINDD--DL--LESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       194 i~d~~~~~~~~--~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      .|++.......  ..  .............+++. .++++.++.-..+.|..||. +++.+..+.-.            .
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP------------~  239 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGNHIARYEVP------------G  239 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCCEEEEEECS------------C
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecC-CCcEeeEecCC------------C
Confidence            99886332111  11  11122334567888887 67777666667789999995 68888887652            2


Q ss_pred             Cceeeeccc-CCCCeEEEEEec
Q 016457          270 DYFVDCHYP-GEGENLWVIGGT  290 (389)
Q Consensus       270 ~~i~~~~~~-~~~~~~~l~~g~  290 (389)
                      ..+++++|- ++.+.+|+.|+.
T Consensus       240 ~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         240 KQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CceEEEEEeCCCCCEEEEEECC
Confidence            568899996 677777766654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=2.5e-06  Score=70.38  Aligned_cols=250  Identities=9%  Similarity=0.003  Sum_probs=147.7

Q ss_pred             CCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec----CCeEEEEECcC
Q 016457           80 SSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC----GSQIQFWDWRN  155 (389)
Q Consensus        80 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~  155 (389)
                      ...+..++|.+++  +++++-...+.|..|+...++....+.........+++++++..+++...    .+.+...+...
T Consensus        39 ~~~lEG~~~D~~G--~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQG--QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCC--CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3345689999888  67777778899999998877766666656677899999988766655432    24455666555


Q ss_pred             Cceeeeeee-cccCCeeEEEEecCCCCeEEEEeC------CCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          156 KKQVACLEE-SHVEDVTQVHFVPNNQNKVVSASV------DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       156 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      ......... .-......+++.++|. +.++...      .+.+..++....     .+..+...-...+.++|+ ++++
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~-----~~~~~~~~~~~pnGia~s-~dg~  189 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALS-TDEK  189 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEEC-TTSS
T ss_pred             ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc-----eeEEEeeccceeeeeeec-cccc
Confidence            544333321 1123467899999995 6665432      123555554421     223333333455789999 5555


Q ss_pred             -EEEEEecCCcEEEEEcCCC-ceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCcc
Q 016457          229 -HLWCLTHIETLSIWDWKDG-QNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAA  306 (389)
Q Consensus       229 -~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~  306 (389)
                       ++++-+..+.|..|++... .............     .......-.+++..+|+  +.++....+.|.+|+- .++. 
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~-----~~~~~~PdGl~vD~~G~--l~Va~~~~g~V~~~~p-~G~~-  260 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-----FTGHEGPDSCCIDSDDN--LYVAMYGQGRVLVFNK-RGYP-  260 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-----CCSSSEEEEEEEBTTCC--EEEEEETTTEEEEECT-TSCE-
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeec-----cCCccceeeeeEcCCCC--EEEEEcCCCEEEEECC-CCcE-
Confidence             4566667889999998643 2221111100000     00113356789999997  5566667899999995 4443 


Q ss_pred             ccCCCeEEEec-----ccceeeeeccCCCcccCCCCCCCceeEEEecC----CCeEEEEeccCC
Q 016457          307 TIGPPEAVLVG-----GHTAVVRSVLPMPSVQGRPAQSHGIFGWTGGE----DGRLCCWLSDDS  361 (389)
Q Consensus       307 ~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~v~iW~~~~~  361 (389)
                           +..+..     ++...+.++         +|.+++..+++...    ++.-.+|.++..
T Consensus       261 -----l~~i~~P~~~~~~~~~~~~~---------~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         261 -----IGQILIPGRDEGHMLRSTHP---------QFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             -----EEEEECTTGGGTCSCBCCEE---------EECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             -----EEEEeCCCcCCCcCceeeeE---------EEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence                 444431     222345555         77777665555432    333445555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-07  Score=80.89  Aligned_cols=124  Identities=10%  Similarity=0.027  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecCcee-ee-eec----CcceEEEeecCCCCeEEEEec---------CCeEEEEeCCCceeeee--ecCCC
Q 016457           18 DNVNSIKRFGLKNSI-QT-NFG----DDYVFEIVPKNDWSLMAVSLS---------TNVVKLYSPVTGQYSGE--CKGHS   80 (389)
Q Consensus        18 ~~~~~i~~w~~~~~~-~~-~~~----~~~v~~~~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~--~~~~~   80 (389)
                      ..+|.|.+|+..... .. +..    .-.+....|+||+++++.+..         .+.+.++|+.+++....  .....
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            356789999986321 12 221    346778889999999887753         46789999998765433  22334


Q ss_pred             CcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcC-CCC-----------------eEEEEEeCCCCeEEEe
Q 016457           81 STVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAG-SQE-----------------IFCFSFGGSTDYLLAA  142 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~-----------------v~~~~~~~~~~~l~~~  142 (389)
                      ..+....|+|+|  +.||-.. ++.|.+.+..++..++..... ...                 -..+-|+|++.+|+..
T Consensus       114 ~~l~~~~wSPDG--~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         114 AKLQYAGWGPKG--QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCCSBCCBCSST--TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cccceeeeccCC--ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            556678999999  5777654 567888888776655444322 111                 2467799999999886


Q ss_pred             ec
Q 016457          143 GC  144 (389)
Q Consensus       143 ~~  144 (389)
                      ..
T Consensus       191 ~~  192 (465)
T d1xfda1         191 AI  192 (465)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.8e-07  Score=79.59  Aligned_cols=231  Identities=11%  Similarity=0.090  Sum_probs=135.4

Q ss_pred             EeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC---CCCcEEEEEEeCCCCCCEEEEEe---------cCCeEEEEEc
Q 016457           44 IVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG---HSSTVNQISFSGPSTPHVLHSCS---------SDGTIRAWDT  111 (389)
Q Consensus        44 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~l~s~~---------~dg~i~iwd~  111 (389)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..   ..-.+....|+|++  ++++...         ..+.+.++|+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~--~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR--EYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS--SEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC--CeEEEEEcccceeEeeccccEEEEEc
Confidence            468888876654 4578899999988865433332   22357788899999  5766653         3567889999


Q ss_pred             cCCeEEEEEE--cCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCC-----------------eeE
Q 016457          112 RSFHEVWSVT--AGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVED-----------------VTQ  172 (389)
Q Consensus       112 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------------v~~  172 (389)
                      .++.......  .....+....|+|++..++-.. ++.|.+.+...+..++....+....                 -..
T Consensus        99 ~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1          99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             cCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence            8876543222  2234566788999999987765 5788898887766554433222211                 246


Q ss_pred             EEEecCCCCeEEEEe-CCCcEEEEe---------------------------------cCCCCCCCccc--eeeeccCCc
Q 016457          173 VHFVPNNQNKVVSAS-VDGLICTFD---------------------------------TGGDINDDDLL--ESVINVGTS  216 (389)
Q Consensus       173 ~~~~~~~~~~l~~~~-~d~~i~i~d---------------------------------~~~~~~~~~~~--~~~~~~~~~  216 (389)
                      +.|+|+|+ .|+... .+..|..+.                                 +.++.......  .........
T Consensus       178 ~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         178 HWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECCCCC-eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            78999997 776654 233343333                                 32211000000  000011123


Q ss_pred             eeeEEEecCCCcEEEEEec-C---CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEE
Q 016457          217 VGKVGFFGETNKHLWCLTH-I---ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVI  287 (389)
Q Consensus       217 i~~~~~~~~~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  287 (389)
                      +..+.|. +++++++.... +   ..|.++|..++++...+....    ..|-.   ..-....|+++|+.++++
T Consensus       257 ~~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~----~~wv~---~~~~~p~~~~dg~~~~fi  323 (465)
T d1xfda1         257 ITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES----EAWLH---RQNEEPVFSKDGRKFFFI  323 (465)
T ss_dssp             EEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC----SSCCC---CCCCCCEECTTSCSEEEE
T ss_pred             eeeeEEc-CCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC----CceEe---ccCCceeEccCCCeeEEE
Confidence            5667887 56665544332 2   268889999988766554321    11210   111345788999865444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.83  E-value=9.8e-06  Score=65.88  Aligned_cols=202  Identities=8%  Similarity=-0.027  Sum_probs=131.4

Q ss_pred             CCeEEEEecCceeee-eecCcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecC----CCCcEEEEEEeCCCCC
Q 016457           20 VNSIKRFGLKNSIQT-NFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKG----HSSTVNQISFSGPSTP   94 (389)
Q Consensus        20 ~~~i~~w~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~   94 (389)
                      .+.|..|+..+.... +.....+.++++.++|.++++ +. ..|.++|..+++.......    ....++.+.+.|++  
T Consensus        39 ~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G--  114 (295)
T d2ghsa1          39 ERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG--  114 (295)
T ss_dssp             GTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS--
T ss_pred             CCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCC--
Confidence            355666665543333 333777889999999866654 44 4589999998865433221    22358899999998  


Q ss_pred             CEEEEEec----CCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCc------ee--ee
Q 016457           95 HVLHSCSS----DGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKK------QV--AC  161 (389)
Q Consensus        95 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~------~~--~~  161 (389)
                      .+.++...    .+.-.+|.+..++....+.. -...+.++|+++++.++.+.. .+.|..+++....      ..  ..
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             CEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec
Confidence            45554332    23456777777766555543 356688999999988777765 7889998875321      11  11


Q ss_pred             eeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          162 LEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      +. ........+++..+| ++.++.-..+.|..||...     +.+..+.-....+++++|-.++.+.|++.
T Consensus       194 ~~-~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G-----~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         194 ST-GIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDG-----NHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CT-TSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTC-----CEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cC-cccccccceEEcCCC-CEEeeeeCCCceEEecCCC-----cEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            11 234457889999999 4777777788999999763     23444443445789999986665555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=2e-05  Score=65.36  Aligned_cols=235  Identities=8%  Similarity=0.093  Sum_probs=146.3

Q ss_pred             EEeecC---CCCeEEEEec-CCeEEEEeCCCceeeeeecC-CCCcEEEEEEeCCCCCCEEEEEecCC-------------
Q 016457           43 EIVPKN---DWSLMAVSLS-TNVVKLYSPVTGQYSGECKG-HSSTVNQISFSGPSTPHVLHSCSSDG-------------  104 (389)
Q Consensus        43 ~~~~~~---~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg-------------  104 (389)
                      .+++..   ||++|++... +++|.+.|+.+.+..+.+.- ....+..+...++.+..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   7888888764 78999999998887554432 34567777776554436777776633             


Q ss_pred             -----eEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCC---------------eEEEEEC-----------
Q 016457          105 -----TIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGS---------------QIQFWDW-----------  153 (389)
Q Consensus       105 -----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~-----------  153 (389)
                           .+.++|..+.+....+... .....++++++++++++++.+.               .+.++++           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 3678899999888887764 5677899999999999987521               2333433           


Q ss_pred             ------------cCC---ceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCC-------CCCCccceeee
Q 016457          154 ------------RNK---KQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGD-------INDDDLLESVI  211 (389)
Q Consensus       154 ------------~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~  211 (389)
                                  +..   ..+..+.  -......+.++|+|+.+++++..+.++.++|++.-       ......+....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             cEEeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                        321   1111222  23445678999999866666777999999999721       11111111112


Q ss_pred             ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCC----------ceeEEeecccccccCCccCCCCCceeeecccCCC
Q 016457          212 NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDG----------QNVASFENARSLASDSWTLDDVDYFVDCHYPGEG  281 (389)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  281 (389)
                      ...-.....+|. ..+....+.--|..|.-|++...          ..+..+.-+-       ..+|......-...|+|
T Consensus       326 elglgPLht~fd-~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y-------~~gh~~~~~g~t~~~dg  397 (459)
T d1fwxa2         326 ELGLGPLHTAFD-GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-------QPGHLKTVMGETLDATN  397 (459)
T ss_dssp             BCCSCEEEEEEC-TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-------CEEEEEETTTTSTTCCS
T ss_pred             ccCcCccccccC-CCceEEEEeeccceEEEEecchhhhhhccccCCcceecccccc-------CCCCCccCcCCcCCCCC
Confidence            233345567787 56766666678999999998432          2333333211       11233333444567888


Q ss_pred             CeEEEEEec
Q 016457          282 ENLWVIGGT  290 (389)
Q Consensus       282 ~~~~l~~g~  290 (389)
                      +  ||++..
T Consensus       398 k--~l~~~n  404 (459)
T d1fwxa2         398 D--WLVCLS  404 (459)
T ss_dssp             S--EEEEEE
T ss_pred             C--EEEEec
Confidence            8  777663

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.50  E-value=8e-06  Score=65.74  Aligned_cols=228  Identities=7%  Similarity=0.017  Sum_probs=122.4

Q ss_pred             eecCC--CCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEe-cCC-----eEEEEEccCCeE
Q 016457           45 VPKND--WSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCS-SDG-----TIRAWDTRSFHE  116 (389)
Q Consensus        45 ~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg-----~i~iwd~~~~~~  116 (389)
                      ..+||  |+.+|..+ ++.|.+.|+.+++.. .+..+...+...+|+|||  +.|+... .++     .|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG--~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDG--RKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTS--SEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCC--CEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  99888775 678999999987754 455567788999999999  6776543 222     366777777765


Q ss_pred             EEEEEc------CCCCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEE
Q 016457          117 VWSVTA------GSQEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       117 ~~~~~~------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      ......      .........|+|+++.++....      ...+...+...+.....    +........+ +++...++
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~  155 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHILF-ADGRRVIG  155 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEEEE-ETTEEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCccceeee-cCCCeEEE
Confidence            432111      1234567889999988887644      12355555554433222    2222233333 33321333


Q ss_pred             EEeCCCc-----------EEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC--CcEEEEEcCCCceeE
Q 016457          185 SASVDGL-----------ICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI--ETLSIWDWKDGQNVA  251 (389)
Q Consensus       185 ~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~  251 (389)
                      ....+..           ........     .................+. ++ ..+.....+  ..|.++|+.+++.. 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~d~~g~~~~-  227 (281)
T d1k32a2         156 RNTFELPHWKGYRGGTRGKIWIEVNS-----GAFKKIVDMSTHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLDGKDLR-  227 (281)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEET-----TEEEEEECCSSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETTSCSCE-
T ss_pred             eeccccceeeeeccCCcceeeeeccc-----cceeeccCCccccceeeee-cc-ccceecccccccceEEEeCCCCceE-
Confidence            3222111           00111100     0111112222333344444 22 233333333  36777787655433 


Q ss_pred             EeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          252 SFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      .+...             .......|+|||+.+  +. ..++.|+++|+.+++.
T Consensus       228 ~lt~~-------------~~~~~~~~SpDG~~I--~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         228 KHTSF-------------TDYYPRHLNTDGRRI--LF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             ECCCC-------------CSSCEEEEEESSSCE--EE-EETTEEEEECTTTCCE
T ss_pred             EeecC-------------CCcccccCcCCCCEE--EE-EeCCEEEEEECCCCCE
Confidence            33221             111223589999954  32 2357899999998875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=0.00036  Score=54.76  Aligned_cols=204  Identities=11%  Similarity=0.143  Sum_probs=135.4

Q ss_pred             EEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccC-CeEEEEEE
Q 016457           43 EIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRS-FHEVWSVT  121 (389)
Q Consensus        43 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~  121 (389)
                      +.-.+|..+.||.=+ ..++.++|+++.+.++.+. ..+.|.-=.|-.+.   .|+-.+. ..|.-|+++. ..+.+.+.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~---~L~lVT~-taVYHW~~~g~s~P~k~fd  140 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN---TVALVTD-NAVYHWSMEGESQPVKMFD  140 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS---EEEEECS-SEEEEEESSSSCCCEEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC---EEEEEcC-CceEEEcccCCCCchhhhh
Confidence            334678888888776 6789999999999888887 44577777887554   6766654 4799999953 35777777


Q ss_pred             cC----CCCeEEEEEeCCCCeEEEeec-------CCeEEEEECcCCceeeeeeecccCCeeEEEEecCC--CCeEEEEe-
Q 016457          122 AG----SQEIFCFSFGGSTDYLLAAGC-------GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNN--QNKVVSAS-  187 (389)
Q Consensus       122 ~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~-  187 (389)
                      .|    ...|..-..+++.+.++..|-       .|.+.+|..+.+ .-+.++ +|......+.+..+.  ..+++.+. 
T Consensus       141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc-ceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            76    456777888888888877664       378889987643 333444 565444444332111  11222222 


Q ss_pred             --CCCcEEEEecCCCCCC-C---ccceee-e---ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          188 --VDGLICTFDTGGDIND-D---DLLESV-I---NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       188 --~d~~i~i~d~~~~~~~-~---~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                        ..+.+++.++...... .   +....+ .   ...+-..++..+ +....++..+.-|.|++||++++.++..-.-
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-~kygiiyviTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-TTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-ccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence              2368999998753211 1   111111 1   123455678888 6667899999999999999999998876554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.31  E-value=0.00043  Score=61.71  Aligned_cols=147  Identities=14%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCC----CcEE-EEEEeCCCCCCEEEEEec------CCeEEEEEccCCeEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHS----STVN-QISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~-~i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  119 (389)
                      .+++.++.|+.|.-.|.++|+.+..+....    ..++ .-.+. ++   .++.+..      .|.|+-+|+.+|+.+..
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~---~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD---KVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT---EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CC---eEEEeeccccccccCceEEEECCCCcEEEE
Confidence            468888889999999999999888764211    1111 11111 33   5666543      48999999999999998


Q ss_pred             EEcCC-------------------------------------CCe-EEEEEeCCCCeEEEeecC----------------
Q 016457          120 VTAGS-------------------------------------QEI-FCFSFGGSTDYLLAAGCG----------------  145 (389)
Q Consensus       120 ~~~~~-------------------------------------~~v-~~~~~~~~~~~l~~~~~d----------------  145 (389)
                      +....                                     ..+ ..+++.+..+.++.+..+                
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence            76321                                     111 234566666666665432                


Q ss_pred             CeEEEEECcCCceeeeeeecccC--------CeeEEEE-ecCCC--CeEEEEeCCCcEEEEecCCCC
Q 016457          146 SQIQFWDWRNKKQVACLEESHVE--------DVTQVHF-VPNNQ--NKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       146 ~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~-~~~~~--~~l~~~~~d~~i~i~d~~~~~  201 (389)
                      ..|...|+++++.+..++..|.+        ....+.. ..+++  ..++.+..+|.+.++|..+++
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence            35888899999998877632221        1122221 22331  267778889999999998774

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=0.00047  Score=54.47  Aligned_cols=208  Identities=7%  Similarity=-0.057  Sum_probs=133.3

Q ss_pred             CcceEEEeecCCCCeEEEEe-cCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeE
Q 016457           38 DDYVFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE  116 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  116 (389)
                      ...+.+++|.+..+.|..+. .++.|+..++..+.....+......+.++++..-+. .+.++-...+.|.+.++.....
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCC-eEEEeccCCCEEEEEecCCceE
Confidence            44577899998877777654 467898888876554444443345678889876552 3445555677999999875544


Q ss_pred             EEEEEcCCCCeEEEEEeCCCCeEEEeecC---CeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE-EEEeCCCcE
Q 016457          117 VWSVTAGSQEIFCFSFGGSTDYLLAAGCG---SQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV-VSASVDGLI  192 (389)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i  192 (389)
                      ...+...-..+..++++|..+.++.+...   +.|.--++.......... ..-.....|++.+.+. .| .+-...+.|
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~~-~lYw~d~~~~~I  191 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSS-QLCWVDAGTHRA  191 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTT-EEEEEETTTTEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecCc-EEEEEeCCCCEE
Confidence            33333334678999999999988876542   234444554333222222 2334568999998875 55 444567889


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeec
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFEN  255 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  255 (389)
                      ...|+....     ...+........++++.  ++.+.++-...+.|...|..+++.+..+..
T Consensus       192 ~~~~~~g~~-----~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         192 ECLNPAQPG-----RRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             EEEETTEEE-----EEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             EEEECCCCC-----eEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            999998431     22222222234578876  345556666778999999988887776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.25  E-value=0.0006  Score=60.45  Aligned_cols=148  Identities=11%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCC----CcEEEEEEeCCCCCCEEEEEe------cCCeEEEEEccCCeEEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHS----STVNQISFSGPSTPHVLHSCS------SDGTIRAWDTRSFHEVWSV  120 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~  120 (389)
                      ..|+.++.++.+.-.|.++|+.+.......    ..++.--.-.++   .++.+.      .+|.|+-+|+.+|+.+..+
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~---~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD---TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT---EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC---eEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            467788889999999999998876653211    111111111133   455544      3778999999999999987


Q ss_pred             EcCC-------------------------------------CCe-EEEEEeCCCCeEEEeec----------------CC
Q 016457          121 TAGS-------------------------------------QEI-FCFSFGGSTDYLLAAGC----------------GS  146 (389)
Q Consensus       121 ~~~~-------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------d~  146 (389)
                      ....                                     ..+ ...++.+..+.++.+..                ..
T Consensus       193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence            6431                                     111 12456666666655443                24


Q ss_pred             eEEEEECcCCceeeeeeeccc--------CCeeEEEEecCCC--CeEEEEeCCCcEEEEecCCCC
Q 016457          147 QIQFWDWRNKKQVACLEESHV--------EDVTQVHFVPNNQ--NKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       147 ~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~  201 (389)
                      .+...|+++++.+..++..|.        ..........++.  ..++.++.+|.++++|..+++
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence            678889999998877762221        1112222223332  256778889999999988764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.23  E-value=0.00078  Score=59.61  Aligned_cols=235  Identities=13%  Similarity=0.094  Sum_probs=135.4

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCC----cEEE-EEEeCCCCCCEEEEEec------CCeEEEEEccCCeEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSS----TVNQ-ISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----~v~~-i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  119 (389)
                      ..++.+..++.|.-.|..+|+.+........    .++. -.+. ++   .++.+..      .|.|.-+|.++++.+..
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~-~~---~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG---KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT---EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeee-cC---cccccccceeccccceEEEEECCCceEEee
Confidence            4678888899999999999998877653211    0110 0111 33   4555432      36799999999999998


Q ss_pred             EEcCC------------------------------CCe-EEEEEeCCCCeEEEeec-------------------CCeEE
Q 016457          120 VTAGS------------------------------QEI-FCFSFGGSTDYLLAAGC-------------------GSQIQ  149 (389)
Q Consensus       120 ~~~~~------------------------------~~v-~~~~~~~~~~~l~~~~~-------------------d~~i~  149 (389)
                      +..-.                              ..+ ..+++.+..+.++.+..                   ...|.
T Consensus       194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~siv  273 (560)
T d1kv9a2         194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (560)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             eeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeE
Confidence            86321                              111 12556666666655332                   24677


Q ss_pred             EEECcCCceeeeeeecccC--------CeeEEEEecCC--CCeEEEEeCCCcEEEEecCCCCCCCcc-------cee---
Q 016457          150 FWDWRNKKQVACLEESHVE--------DVTQVHFVPNN--QNKVVSASVDGLICTFDTGGDINDDDL-------LES---  209 (389)
Q Consensus       150 iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~---  209 (389)
                      ..|+++++.+..++..|.+        ...-+....++  ...++.++.+|.++++|..+++.....       ...   
T Consensus       274 Ald~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~  353 (560)
T d1kv9a2         274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (560)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccCh
Confidence            8899999987766522211        11112222222  226777888999999998876421000       000   


Q ss_pred             -----eec---------------cC--CceeeEEEecCCCcEEEEEecC-------------------------------
Q 016457          210 -----VIN---------------VG--TSVGKVGFFGETNKHLWCLTHI-------------------------------  236 (389)
Q Consensus       210 -----~~~---------------~~--~~i~~~~~~~~~~~~l~~~~~d-------------------------------  236 (389)
                           ...               ..  ..-...++. ++..++++...+                               
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d-p~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  432 (560)
T d1kv9a2         354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN-PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (560)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE-TTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             hhccccccccccccccceeeeecccccccccccccc-CCCCeeecccccccceeeccccccccccccccccCcccccCCC
Confidence                 000               00  001244566 333444433321                               


Q ss_pred             -----CcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          237 -----ETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       237 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                           |.|.-+|+.+++.+-++...             .+...-.++-.+.  ++++|+.||.++.+|..+++.
T Consensus       433 ~~~~~G~l~A~D~~tGk~~W~~~~~-------------~~~~gg~l~Tagg--lVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         433 AAVVSGALLAWDPVKQKAAWKVPYP-------------THWNGGTLSTAGN--LVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEES-------------SSCCCCEEEETTT--EEEEECTTSEEEEEETTTCCE
T ss_pred             CcccccceEEEeCCCCeEeeeccCC-------------CCCCCceeEECCC--EEEEECCCCcEEEEECCCCcE
Confidence                 45777888888877665532             2222222333455  678899999999999999987

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.21  E-value=0.001  Score=55.14  Aligned_cols=198  Identities=11%  Similarity=0.012  Sum_probs=118.1

Q ss_pred             CEEEEEe-cCCeEEEEEccCCeEEEEEEcC-CCCeEEEEEe--CCCCeEEEeecC------------------CeEEEEE
Q 016457           95 HVLHSCS-SDGTIRAWDTRSFHEVWSVTAG-SQEIFCFSFG--GSTDYLLAAGCG------------------SQIQFWD  152 (389)
Q Consensus        95 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d------------------~~i~iwd  152 (389)
                      ++|+... .+.+|.+.|+++.+....+... ...+..+...  |+..++++.+.+                  +.+.++|
T Consensus       100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID  179 (459)
T d1fwxa2         100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  179 (459)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred             eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence            4555544 7789999999999987766554 4556666654  455666665552                  3467889


Q ss_pred             CcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC--------------------------------------CcEEE
Q 016457          153 WRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD--------------------------------------GLICT  194 (389)
Q Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------------------~~i~i  194 (389)
                      ..+.+...++.  -......+.++++|+ ++++.+.+                                      +.+.+
T Consensus       180 ~~tm~V~~QV~--V~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         180 ADKWEVAWQVL--VSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             TTTTEEEEEEE--ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             cCCceEEEEee--eCCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            99888887776  344677899999997 66665533                                      12233


Q ss_pred             EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe-cCCcEEEEEcCCCceeEE-eecccccccCCccCCCCCce
Q 016457          195 FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT-HIETLSIWDWKDGQNVAS-FENARSLASDSWTLDDVDYF  272 (389)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i  272 (389)
                      .|.+..  ....+..+.........+.++ ++++++++++ .+.++.++|++....... -...+....+.  .+..-..
T Consensus       257 VD~~~~--~~~~v~~yIPVpKsPHGV~vS-PDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e--~elglgP  331 (459)
T d1fwxa2         257 VDGRKE--ASSLFTRYIPIANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--PELGLGP  331 (459)
T ss_dssp             EECSGG----CSSEEEEEEESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC--CBCCSCE
T ss_pred             eccccc--CCcceeEEEecCCCCCceEEC-CCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee--cccCcCc
Confidence            333311  011222233344456788888 6777766655 478999999864211100 00000000000  0012344


Q ss_pred             eeecccCCCCeEEEEEecCCceEEEEEecc
Q 016457          273 VDCHYPGEGENLWVIGGTGAGTVGYFPVNY  302 (389)
Q Consensus       273 ~~~~~~~~~~~~~l~~g~~dg~i~i~~~~~  302 (389)
                      ...+|...|.  ...+---|..|.-|++..
T Consensus       332 Lht~fd~~g~--aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         332 LHTAFDGRGN--AYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEECTTSE--EEEEETTTTEEEEEEHHH
T ss_pred             cccccCCCce--EEEEeeccceEEEEecch
Confidence            5667887775  446667899999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=0.00027  Score=56.36  Aligned_cols=96  Identities=10%  Similarity=0.033  Sum_probs=64.7

Q ss_pred             EEeCC--CCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec-C-----CeEEEEECcCCce
Q 016457           87 SFSGP--STPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-G-----SQIQFWDWRNKKQ  158 (389)
Q Consensus        87 ~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~  158 (389)
                      ..+|+  |  +.++-.+ ++.|.+.|+.+++.. .+..+...+...+|+|+++.|+.... +     ..|.+++...++.
T Consensus         5 ~~sPdi~G--~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHG--DRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEET--TEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCC--CEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35677  7  5666554 456888899887764 55666678899999999999887654 2     2477788777765


Q ss_pred             eeeee-----ecccCCeeEEEEecCCCCeEEEEe
Q 016457          159 VACLE-----ESHVEDVTQVHFVPNNQNKVVSAS  187 (389)
Q Consensus       159 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~  187 (389)
                      .....     ...........|+|+++ .|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCC-EEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCC-EEEEEE
Confidence            43221     01223456789999996 666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=0.0012  Score=52.07  Aligned_cols=229  Identities=8%  Similarity=-0.019  Sum_probs=136.0

Q ss_pred             CeEEEEecCCeEEEEeCCCceee-----eeecCCCCcEEEEEEeCCCCCCEEEE-EecCCeEEEEEccCCeEEEEEEcCC
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYS-----GECKGHSSTVNQISFSGPSTPHVLHS-CSSDGTIRAWDTRSFHEVWSVTAGS  124 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~  124 (389)
                      .+|+.+. .+.|+-.+++.....     ..+..+...+.+|+|.+..  +.|.- -..++.|+..++........+....
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~--~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD--KVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT--TEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCC--CEEEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            3444444 356777776543211     1233344567889998776  44544 4566788888887655554454444


Q ss_pred             CCeEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEe-CCC--cEEEEecCCC
Q 016457          125 QEIFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSAS-VDG--LICTFDTGGD  200 (389)
Q Consensus       125 ~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~  200 (389)
                      ..+.++++...++.|+.+.. .+.|.+.++........+. ........++++|... ++.... ..+  .|.-.++...
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g-~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRG-NLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTT-EEEEEECCSSSCEEEEEETTSC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccC-cEEEeecCCCCcEEEEecCCCC
Confidence            67899999877788876655 6899999987554332222 3345688999999886 554433 222  3544555532


Q ss_pred             CCCCccceeee-ccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccC
Q 016457          201 INDDDLLESVI-NVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPG  279 (389)
Q Consensus       201 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (389)
                      .     ...+. ..-.....+++.+.++.+.++-...+.|...++........+.+.             ....++++. 
T Consensus       157 ~-----~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-------------~~P~~lav~-  217 (263)
T d1npea_         157 N-----RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-------------QYPFAVTSY-  217 (263)
T ss_dssp             C-----CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-------------CSEEEEEEE-
T ss_pred             C-----ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-------------CCcEEEEEE-
Confidence            1     11221 222456789998555555566566789999998754443333321             223456664 


Q ss_pred             CCCeEEEEEecCCceEEEEEeccCCc
Q 016457          280 EGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       280 ~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                       ++.+| .+-...+.|...|..+++.
T Consensus       218 -~~~lY-wtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         218 -GKNLY-YTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             -TTEEE-EEETTTTEEEEEETTTTEE
T ss_pred             -CCEEE-EEECCCCEEEEEECCCCcc
Confidence             34333 4444567788888877654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.09  E-value=0.002  Score=57.02  Aligned_cols=191  Identities=11%  Similarity=0.035  Sum_probs=110.6

Q ss_pred             eEEEEec-CCeEEEEeC-CCceeeeeecCCCC----c-------EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           52 LMAVSLS-TNVVKLYSP-VTGQYSGECKGHSS----T-------VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        52 ~l~~~~~-d~~i~iw~~-~~~~~~~~~~~~~~----~-------v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      .+++++. ++.|.-.|. ++|+.+.++.....    .       -..+++. +   ..++.++.|+.+.-.|.++++.+.
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~---~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-A---GQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-T---TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-C---CeEEEEeCCCcEEeeehhhhhhhc
Confidence            4555553 678888887 47988877642110    0       0224444 3   368888899999999999999988


Q ss_pred             EEEcCC----CCeEEEEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecc----------------------
Q 016457          119 SVTAGS----QEIFCFSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESH----------------------  166 (389)
Q Consensus       119 ~~~~~~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~----------------------  166 (389)
                      ......    ..++.--.- .++.++++..      +|.|.-+|+++++.+.++....                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             cccccccccccceeecCeE-eCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            776431    111111111 2355555553      6889999999999987654100                      


Q ss_pred             --------------cCCe-eEEEEecCCCCeEEEEeCC----------------CcEEEEecCCCCCCCccceeeeccC-
Q 016457          167 --------------VEDV-TQVHFVPNNQNKVVSASVD----------------GLICTFDTGGDINDDDLLESVINVG-  214 (389)
Q Consensus       167 --------------~~~v-~~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~~~-  214 (389)
                                    ...+ ...++.+... ++..+..+                ..+.-.|.++++    .+-...... 
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~----~~W~~q~~~~  293 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM----AKWGYQKTPH  293 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC----EEEEEESSTT
T ss_pred             ccccccCCcccccCCCccccccccchhcC-eeeeecccccCccccccccccccccceeeeeccchh----heecccccCc
Confidence                          0111 2356667664 65555442                346666777653    111111111 


Q ss_pred             --------CceeeEEEecCCC---cEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          215 --------TSVGKVGFFGETN---KHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       215 --------~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                              ......... .++   ..++..+.+|.+.++|..+++.+...
T Consensus       294 D~Wd~D~~~~~~l~~~~-~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         294 DEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             CSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccceeeee-ccCccccceeeccccceEEEEecCCCcEeeee
Confidence                    111111111 222   25678889999999999999987543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=0.0014  Score=51.70  Aligned_cols=229  Identities=10%  Similarity=0.019  Sum_probs=139.2

Q ss_pred             CCeEEEEecCc-eeeee-ecCcceEEEeecCCCCeEEEEe-cCCeEEEEeCCCce----eeeeecCCCCcEEEEEEeCCC
Q 016457           20 VNSIKRFGLKN-SIQTN-FGDDYVFEIVPKNDWSLMAVSL-STNVVKLYSPVTGQ----YSGECKGHSSTVNQISFSGPS   92 (389)
Q Consensus        20 ~~~i~~w~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~----~~~~~~~~~~~v~~i~~~~~~   92 (389)
                      ...|+..++.. ....+ .+...+.+++|++..+.|.-.. ..+.|.-.++....    ....+......+..+++.+.+
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            34577777753 22233 3355677999999887777664 45667766664321    112222223456678887655


Q ss_pred             CCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeec--CCeEEEEECcCCceeeeeeecccCCe
Q 016457           93 TPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC--GSQIQFWDWRNKKQVACLEESHVEDV  170 (389)
Q Consensus        93 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v  170 (389)
                      . ++.++-...+.|.+.++........+.........++++|..+.++.+..  .+.|.-.++.... ...+....-...
T Consensus        89 ~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p  166 (266)
T d1ijqa1          89 S-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  166 (266)
T ss_dssp             T-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCE
T ss_pred             c-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eeccccccccee
Confidence            2 45555566788999999876655556655677899999998888887754  4567777765433 333331233557


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCcee
Q 016457          171 TQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNV  250 (389)
Q Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  250 (389)
                      +.|++.+.+..+..+-...+.|...|+.+..  ...+...........++++.  ++.++++-..++.|...+..+++..
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~--~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCCC--EEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence            8999998875345554667889999987432  11111111122345677776  3445555556778888887777655


Q ss_pred             EEee
Q 016457          251 ASFE  254 (389)
Q Consensus       251 ~~~~  254 (389)
                      ..+.
T Consensus       243 ~~~~  246 (266)
T d1ijqa1         243 NLLA  246 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.99  E-value=0.0039  Score=55.15  Aligned_cols=146  Identities=11%  Similarity=0.078  Sum_probs=87.5

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCC--C-CcE--EE-EEEeCCCCCCEEEEEec------CCeEEEEEccCCeEEEE
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGH--S-STV--NQ-ISFSGPSTPHVLHSCSS------DGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~-~~v--~~-i~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  119 (389)
                      .++.++.++.+.-.|.++|+.+......  . ..+  +. -.+. ++   .++.++.      .|.|+.+|.++|+.+..
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~---~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG---KVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT---EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEE-ec---cEEEeeccccccccceEEEEecCCccceee
Confidence            5677788999999999999987665421  1 111  10 0111 33   5555543      46899999999999998


Q ss_pred             EEcCC-------------------------------CCe-EEEEEeCCCCeEEEeec-------------------CCeE
Q 016457          120 VTAGS-------------------------------QEI-FCFSFGGSTDYLLAAGC-------------------GSQI  148 (389)
Q Consensus       120 ~~~~~-------------------------------~~v-~~~~~~~~~~~l~~~~~-------------------d~~i  148 (389)
                      +....                               ..+ ...++.+....++....                   ...|
T Consensus       206 ~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~sv  285 (573)
T d1kb0a2         206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (573)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceE
Confidence            75421                               111 12456666666554321                   1357


Q ss_pred             EEEECcCCceeeeeeecc--------cCCeeEEEEecCC--CCeEEEEeCCCcEEEEecCCCC
Q 016457          149 QFWDWRNKKQVACLEESH--------VEDVTQVHFVPNN--QNKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       149 ~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~  201 (389)
                      ...|+++++....++..+        ..+........++  ...++.++.+|.+.++|..+++
T Consensus       286 vAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence            778888888776655211        1112222222232  1267778889999999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.97  E-value=0.0033  Score=52.50  Aligned_cols=156  Identities=10%  Similarity=0.069  Sum_probs=89.3

Q ss_pred             eEEEeecCCCCeEEEEecCC-----------eEEEEeCCCceeeee--e-cCCCCcEEEEEEeCCCCCCEEEEEecC-Ce
Q 016457           41 VFEIVPKNDWSLMAVSLSTN-----------VVKLYSPVTGQYSGE--C-KGHSSTVNQISFSGPSTPHVLHSCSSD-GT  105 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~--~-~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~  105 (389)
                      +.......+|+.++.|+.+.           .+.+||+.+++-...  . ..|.......++.+++  .+++.|+.+ ..
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~i~v~Gg~~~~~   99 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKK   99 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC--cEEEeecCCCcc
Confidence            34444556888888887521           478999988753321  1 2233334466788888  688877655 57


Q ss_pred             EEEEEccCCeEEEEEEcC-CCCeEEEEEeCCCCeEEEeecC------CeEEEEECcCCceeee--eee------ccc---
Q 016457          106 IRAWDTRSFHEVWSVTAG-SQEIFCFSFGGSTDYLLAAGCG------SQIQFWDWRNKKQVAC--LEE------SHV---  167 (389)
Q Consensus       106 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~------~~~---  167 (389)
                      +.+||..+..-...-... ...-.+++..+++..++.++.+      ..+.+||..+.+-...  ...      .+.   
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            999999887654321111 1222345555577777777652      4689999887643211  000      000   


Q ss_pred             --CCeeEEEEecCCCCeEEEEeCCCcEEEEecCC
Q 016457          168 --EDVTQVHFVPNNQNKVVSASVDGLICTFDTGG  199 (389)
Q Consensus       168 --~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (389)
                        ..-..+...+++. .++.+...+.+.++|..+
T Consensus       180 ~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             TTTCSCCEEECGGGC-EEECCSSSEEEEEECSTT
T ss_pred             eccceeEEEEeCCCC-EEEecCcCCcEEecCccc
Confidence              0011123334553 667776677777777764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.89  E-value=0.0067  Score=53.44  Aligned_cols=197  Identities=10%  Similarity=0.065  Sum_probs=113.2

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCCC----------c-EEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSS----------T-VNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS  119 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----------~-v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  119 (389)
                      ..|++++.++.|.-.|.++|+.+.++.....          . -..++..  +  ..++.+..|+.|.-.|..+++.+..
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~~~~~g~l~Alda~tG~~~w~  142 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G--DKVYVGTLDGRLIALDAKTGKAIWS  142 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B--TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--C--CeEEEEeCCCEEEEEECCCCcEEec
Confidence            3667777889999999999999887642111          0 0112222  2  3688888999999999999999988


Q ss_pred             EEcCCCC-eEEEEEeC--CCCeEEEeec------CCeEEEEECcCCceeeeeeecc------------------------
Q 016457          120 VTAGSQE-IFCFSFGG--STDYLLAAGC------GSQIQFWDWRNKKQVACLEESH------------------------  166 (389)
Q Consensus       120 ~~~~~~~-v~~~~~~~--~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~------------------------  166 (389)
                      +...... -..+.-.|  .++.+++++.      .|.|.-+|.++++.+.++....                        
T Consensus       143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccc
Confidence            8753211 00110000  2345555443      3789999999999987765110                        


Q ss_pred             -----cCC-eeEEEEecCCCCeEEEEeC-------------------CCcEEEEecCCCCCCCccceeeeccC-------
Q 016457          167 -----VED-VTQVHFVPNNQNKVVSASV-------------------DGLICTFDTGGDINDDDLLESVINVG-------  214 (389)
Q Consensus       167 -----~~~-v~~~~~~~~~~~~l~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~~~~~-------  214 (389)
                           ... -..+++.+... ++..+..                   ...|.-.|+++++.  .-..+...|.       
T Consensus       223 ~~~~~G~~~W~~~s~D~~~~-l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~--~W~~Q~~~~D~wd~d~~  299 (560)
T d1kv9a2         223 WKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFTAT  299 (560)
T ss_dssp             HHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCCC
T ss_pred             ccccCCCCcccccccccccC-eeeecCCCCcccccccccccCCccccceeeEEecCCccce--eEEEecccccccccccc
Confidence                 011 12356667664 5554432                   12455566665531  0011111111       


Q ss_pred             Cc--eeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEee
Q 016457          215 TS--VGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFE  254 (389)
Q Consensus       215 ~~--i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  254 (389)
                      ..  ...+.........++.++.+|.+.++|..+++.+....
T Consensus       300 ~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             ceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence            11  11222211112367778889999999999998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0043  Score=48.84  Aligned_cols=231  Identities=9%  Similarity=-0.026  Sum_probs=136.0

Q ss_pred             eEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE-ecCCeEEEEEccCCe----EEEEEEcCCCC
Q 016457           52 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC-SSDGTIRAWDTRSFH----EVWSVTAGSQE  126 (389)
Q Consensus        52 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~----~~~~~~~~~~~  126 (389)
                      +|+.+. ...|+..++.+.+....+. ....+.+++|.+..  +.|.-. ...+.|.-.++....    ....+......
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~--~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCC--CEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            344444 3458888988655444444 45567789999876  455544 456667666664321    11222333456


Q ss_pred             eEEEEEeCCCCeEEEeec-CCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEE-eCCCcEEEEecCCCCCCC
Q 016457          127 IFCFSFGGSTDYLLAAGC-GSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSA-SVDGLICTFDTGGDINDD  204 (389)
Q Consensus       127 v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~  204 (389)
                      +.++++.+.++.|+.+.. .+.|.+.++........+. ........++++|....++.+- +..+.|...++...    
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs----  153 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----  153 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC----
Confidence            778898877888877765 6789999987655444444 4556688999999765344443 23456777777632    


Q ss_pred             ccceeeec-cCCceeeEEEecCCCcEEEEEecCCcEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCe
Q 016457          205 DLLESVIN-VGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGEN  283 (389)
Q Consensus       205 ~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  283 (389)
                       ....+.. .-.....+++.+.++.+.++-...+.|...++.............          ......++++.  +..
T Consensus       154 -~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~----------~~~~p~~lav~--~~~  220 (266)
T d1ijqa1         154 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------RLAHPFSLAVF--EDK  220 (266)
T ss_dssp             -CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT----------TTSSEEEEEEE--TTE
T ss_pred             -ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCC----------cccccEEEEEE--CCE
Confidence             1222222 224567899985555566666677899999986544333333211          11334556665  343


Q ss_pred             EEEEEecCCceEEEEEeccCCc
Q 016457          284 LWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       284 ~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      + ..+-..++.|+..+..+++.
T Consensus       221 l-y~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         221 V-FWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             E-EEEETTTTEEEEEETTTCCC
T ss_pred             E-EEEECCCCeEEEEECCCCcc
Confidence            3 34445667787777666554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.70  E-value=0.014  Score=51.56  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecC--CCC----cEEEEEEeCCCCCCEEEEE-------ecCCeEEEEEccCCeEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKG--HSS----TVNQISFSGPSTPHVLHSC-------SSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~----~v~~i~~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~  117 (389)
                      ..++.++.++.+.-.|.++|+.+.....  +..    .-.-+.+.+.-....++..       +..+.|.-+|.++++.+
T Consensus       118 ~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~  197 (582)
T d1flga_         118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             CceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEE
Confidence            4677788899999999999987754321  110    0000111111000233322       23567899999999998


Q ss_pred             EEEEcCCC----------------------------------------Ce-EEEEEeCCCCeEEEeec------------
Q 016457          118 WSVTAGSQ----------------------------------------EI-FCFSFGGSTDYLLAAGC------------  144 (389)
Q Consensus       118 ~~~~~~~~----------------------------------------~v-~~~~~~~~~~~l~~~~~------------  144 (389)
                      ..+.....                                        .+ ..+++.+..+.++.+..            
T Consensus       198 W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~  277 (582)
T d1flga_         198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA  277 (582)
T ss_dssp             EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred             EEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCccccccccccc
Confidence            87754311                                        11 23567767777666431            


Q ss_pred             ------------CCeEEEEECcCCceeeeeeecccC--------CeeEEEEe-cCCC--CeEEEEeCCCcEEEEecCCCC
Q 016457          145 ------------GSQIQFWDWRNKKQVACLEESHVE--------DVTQVHFV-PNNQ--NKVVSASVDGLICTFDTGGDI  201 (389)
Q Consensus       145 ------------d~~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~--~~l~~~~~d~~i~i~d~~~~~  201 (389)
                                  ...|...|+++++.+..++..|.+        ...-+.+. .+++  ..++..+.++.++++|..++.
T Consensus       278 ~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~  357 (582)
T d1flga_         278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence                        235777899999888776622211        11112222 1221  146667788888888887663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.54  E-value=0.025  Score=50.05  Aligned_cols=200  Identities=13%  Similarity=0.043  Sum_probs=113.2

Q ss_pred             CCCeEEEEecCCeEEEEeC-CCceeeeeecCCCC----------c-EEEEEEeCCC--CCCEEEEEecCCeEEEEEccCC
Q 016457           49 DWSLMAVSLSTNVVKLYSP-VTGQYSGECKGHSS----------T-VNQISFSGPS--TPHVLHSCSSDGTIRAWDTRSF  114 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~~----------~-v~~i~~~~~~--~~~~l~s~~~dg~i~iwd~~~~  114 (389)
                      ++.++++++..+.+...|. ++|+.+.++.....          . -..+++.++.  .+.+++.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3433333444566777776 57888877642110          0 1334554332  1246888999999999999999


Q ss_pred             eEEEEEEcCC----CCeEE-EEEeCCCCeEEEeec------CCeEEEEECcCCceeeeeeecc-----------------
Q 016457          115 HEVWSVTAGS----QEIFC-FSFGGSTDYLLAAGC------GSQIQFWDWRNKKQVACLEESH-----------------  166 (389)
Q Consensus       115 ~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~-----------------  166 (389)
                      +.+..+....    ..++. -.+  .++.++++..      .|.|.-+|+++++.+.++....                 
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  219 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             ceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence            9999886431    11111 111  2456666653      4899999999999987754100                 


Q ss_pred             --------------------cCCeeEEEEecCCCCeEEEEeCC----------------CcEEEEecCCCCCCCccceee
Q 016457          167 --------------------VEDVTQVHFVPNNQNKVVSASVD----------------GLICTFDTGGDINDDDLLESV  210 (389)
Q Consensus       167 --------------------~~~v~~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~  210 (389)
                                          ...-..+++.+... ++..+..+                ..|.-.|+++++..  -..+.
T Consensus       220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~--W~~Q~  296 (596)
T d1w6sa_         220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK--FGYQK  296 (596)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE--EEEES
T ss_pred             ccccccccccCCCCceecCCCccccccccccCCC-eeeccccccccccccccccccccccccccccccccccc--ccccc
Confidence                                00112356666664 66655433                23666777765310  01111


Q ss_pred             eccC-------CceeeEEEecCCC---cEEEEEecCCcEEEEEcCCCceeEEe
Q 016457          211 INVG-------TSVGKVGFFGETN---KHLWCLTHIETLSIWDWKDGQNVASF  253 (389)
Q Consensus       211 ~~~~-------~~i~~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~  253 (389)
                      ..|.       ....-+.....++   ..++....+|.+.++|..+++.+...
T Consensus       297 ~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            1111       1111111111222   46778888999999999999887543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=0.023  Score=48.03  Aligned_cols=245  Identities=9%  Similarity=-0.007  Sum_probs=132.2

Q ss_pred             eEEEeecCCCCeEEEEec-CC----eEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecC------------
Q 016457           41 VFEIVPKNDWSLMAVSLS-TN----VVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSD------------  103 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~-d~----~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------------  103 (389)
                      +..++++|+++++|.+-+ +|    .|+++|+.+|+.+...-. ......++|.+++  +.|+....+            
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~--~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDG--KGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTS--SEEEEEECCCCSSCCSSSCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCC--CEEEEEEeccccCcccccccc
Confidence            446678999999987654 33    799999999987642211 1122568899998  555543322            


Q ss_pred             ----CeEEEEEccCCe--EEEEEEcCC--CCeEEEEEeCCCCeEEEeec---CCe--EEEEECcCCce-------eeeee
Q 016457          104 ----GTIRAWDTRSFH--EVWSVTAGS--QEIFCFSFGGSTDYLLAAGC---GSQ--IQFWDWRNKKQ-------VACLE  163 (389)
Q Consensus       104 ----g~i~iwd~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~-------~~~~~  163 (389)
                          ..|..+.+.+..  ....+....  ..+..+..++++.+++....   +..  +.+.|+.....       ...+.
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  283 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence                257777776543  233344332  34667778878888765433   333  44555543211       11111


Q ss_pred             ecccCCeeEEEEecCCCCeEEEEe---CCCcEEEEecCCCCCCCccceeeec-cCCceeeEEEecCCCcEEEEE-ecCC-
Q 016457          164 ESHVEDVTQVHFVPNNQNKVVSAS---VDGLICTFDTGGDINDDDLLESVIN-VGTSVGKVGFFGETNKHLWCL-THIE-  237 (389)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~-~~d~-  237 (389)
                      ........ ...+..+ .+++...   .++.|...++....  ......+.. +...+..-.+. ..+.+|+.. ..++ 
T Consensus       284 ~~~~~~~~-~~~~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~--~~~w~~vi~~~~~~~~~~~~~-~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         284 DNFEGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPE--ESKWKVLVPEHEKDVLEWVAC-VRSNFLVLCYLHDVK  358 (430)
T ss_dssp             CSSSSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTBCC--GGGCEEEECCCSSCEEEEEEE-ETTTEEEEEEEETTE
T ss_pred             cccccceE-EEecCCc-eeecccCcccccceeEEecCCCCc--cccceEEecccCcceeeeEEE-EECCEEEEEEEcCCE
Confidence            11222222 2223333 2444333   24667777776321  122233333 33334333333 223355544 4554 


Q ss_pred             -cEEEEEcCCCceeEEeecccccccCCccCCCCCceeeecccCCCCeEEEEEecCC--ceEEEEEeccCCc
Q 016457          238 -TLSIWDWKDGQNVASFENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGA--GTVGYFPVNYGGA  305 (389)
Q Consensus       238 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~g~~d--g~i~i~~~~~~~~  305 (389)
                       .|+++++.++.....+..            ....+..+...++...+++...+.-  .+++-+|+.+++.
T Consensus       359 ~~l~v~~~~~~~~~~~~~~------------~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFPL------------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEEETTTCCEEEEECC------------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             eEEEEEECCCCcEEEecCC------------CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence             688999988766554432            2245666666666666555444332  6788889888764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.24  E-value=0.035  Score=45.05  Aligned_cols=201  Identities=14%  Similarity=0.175  Sum_probs=118.1

Q ss_pred             CCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeC----CCCCCEEEEEe-cC---CeEEEEEccC-CeEEE
Q 016457           48 NDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSG----PSTPHVLHSCS-SD---GTIRAWDTRS-FHEVW  118 (389)
Q Consensus        48 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~-~d---g~i~iwd~~~-~~~~~  118 (389)
                      |+..+++.....+-|++||++ |+.+..+.  .+.++.|..-.    .+...-++.++ .+   .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            445566666666679999986 88777765  35566665432    22112344444 22   3688888752 33333


Q ss_pred             EEEcC-------CCCeEEEEE--eCCCC--eEEEeecCCeEEEEECcC---C----ceeeeeeecccCCeeEEEEecCCC
Q 016457          119 SVTAG-------SQEIFCFSF--GGSTD--YLLAAGCGSQIQFWDWRN---K----KQVACLEESHVEDVTQVHFVPNNQ  180 (389)
Q Consensus       119 ~~~~~-------~~~v~~~~~--~~~~~--~l~~~~~d~~i~iwd~~~---~----~~~~~~~~~~~~~v~~~~~~~~~~  180 (389)
                      .+...       ...+..+|+  ++..+  ++++...+|.+..|.+..   +    +.++.+.  -...+..+++.+...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDde~~  192 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADDEYG  192 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEETTTT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeCCCC
Confidence            33221       224666666  65544  345556689998887642   2    2345554  456789999999885


Q ss_pred             CeEEEEeCCCcEEEEecCCCCCCCccce-eee--ccCCceeeEEEecC---CCcEEEEEecCCcEEEEEcCCC-ceeEEe
Q 016457          181 NKVVSASVDGLICTFDTGGDINDDDLLE-SVI--NVGTSVGKVGFFGE---TNKHLWCLTHIETLSIWDWKDG-QNVASF  253 (389)
Q Consensus       181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~--~~~~~i~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~  253 (389)
                       .|+.+-++..|..++..........+. ...  .....+..++....   ++-+|++.-.+++..+||.... +.+..|
T Consensus       193 -~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         193 -SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             -EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             -cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence             888888887777777653221111111 111  13456777776522   2334455556789999998764 556565


Q ss_pred             e
Q 016457          254 E  254 (389)
Q Consensus       254 ~  254 (389)
                      .
T Consensus       272 ~  272 (353)
T d1h6la_         272 Q  272 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.15  E-value=0.017  Score=50.86  Aligned_cols=83  Identities=12%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             CeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeE
Q 016457          104 GTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKV  183 (389)
Q Consensus       104 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  183 (389)
                      |.|.-||+.+++.+..++... +...=...-.++.+++++.||.++.+|.++++.+.++.......-.-+.|..+|+.++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468889999999998887642 2211112226788888888999999999999999888732222222255556776455


Q ss_pred             EEEe
Q 016457          184 VSAS  187 (389)
Q Consensus       184 ~~~~  187 (389)
                      +..+
T Consensus       536 ~v~~  539 (573)
T d1kb0a2         536 SVAV  539 (573)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.05  E-value=0.055  Score=44.67  Aligned_cols=159  Identities=7%  Similarity=-0.062  Sum_probs=86.6

Q ss_pred             EeCCCCCCEEEEEecCC-----------eEEEEEccCCeEE--EEEEc-CCCCeEEEEEeCCCCeEEEeec-CCeEEEEE
Q 016457           88 FSGPSTPHVLHSCSSDG-----------TIRAWDTRSFHEV--WSVTA-GSQEIFCFSFGGSTDYLLAAGC-GSQIQFWD  152 (389)
Q Consensus        88 ~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd  152 (389)
                      ...++  ++++.|+.+.           .+.+||+.+++-.  ..... +.......++.+++..++.++. ...+.+||
T Consensus        27 ~~~~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          27 EPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             ETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EeeCC--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33455  5666666421           3678999876532  22222 2223345567767777776665 46899999


Q ss_pred             CcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC------CcEEEEecCCCCCC-----CccceeeeccCC----ce
Q 016457          153 WRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD------GLICTFDTGGDIND-----DDLLESVINVGT----SV  217 (389)
Q Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~-----~~~~~~~~~~~~----~i  217 (389)
                      ..+..-...-.......-...+..+++. +++.|+.+      ..+.+||..+..-.     .........+..    .-
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             CccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence            9876543221111222345677778885 78877643      35889998854200     000000000000    01


Q ss_pred             eeEEEecCCCcEEEEEecCCcEEEEEcCCCce
Q 016457          218 GKVGFFGETNKHLWCLTHIETLSIWDWKDGQN  249 (389)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  249 (389)
                      ....+...+++.+..+...+.+.+++..+...
T Consensus       184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            12233335666777777777777777776643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.096  Score=40.87  Aligned_cols=220  Identities=10%  Similarity=0.092  Sum_probs=128.8

Q ss_pred             CeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeCCCCeE
Q 016457           60 NVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYL  139 (389)
Q Consensus        60 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  139 (389)
                      .+|.|.|+.++.....-.-   .--+.-.+|..  +.|+.-+ ..++.++|+++.+.++.+... .+|.--.|- +...|
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~--~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWi-s~~~L  116 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPAS--KVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI-SLNTV  116 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSS--SEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEES-SSSEE
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCC--cEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEec-CCCEE
Confidence            4788889876543222111   11234467777  5666655 568999999999999998875 677778886 44454


Q ss_pred             EEeecCCeEEEEECcCC-ceeeeeeeccc----CCeeEEEEecCCCCeEEEEe-------CCCcEEEEecCCCCCCCccc
Q 016457          140 LAAGCGSQIQFWDWRNK-KQVACLEESHV----EDVTQVHFVPNNQNKVVSAS-------VDGLICTFDTGGDINDDDLL  207 (389)
Q Consensus       140 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~  207 (389)
                      ...+ +..|+-|++... .+.+.+. .|.    ..|-.-..+++.+ +++..+       -.|.+.+|....+     .-
T Consensus       117 ~lVT-~taVYHW~~~g~s~P~k~fd-R~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~i~G~mQLYS~er~-----~s  188 (327)
T d1utca2         117 ALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRK-----VS  188 (327)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETTTT-----EE
T ss_pred             EEEc-CCceEEEcccCCCCchhhhh-hcccccCceEEEEEECCCCC-EEEEEeEecCCCceeEEEEEEEeccC-----cC
Confidence            4444 478999999543 4555555 333    4566777788886 554433       1367888988732     23


Q ss_pred             eeeeccCCceeeEEEec--CCCcEEEEEe---cCCcEEEEEcCCCc---e---eE--EeecccccccCCccCCCCCceee
Q 016457          208 ESVINVGTSVGKVGFFG--ETNKHLWCLT---HIETLSIWDWKDGQ---N---VA--SFENARSLASDSWTLDDVDYFVD  274 (389)
Q Consensus       208 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~---~d~~i~i~d~~~~~---~---~~--~~~~~~~~~~~~~~~~~~~~i~~  274 (389)
                      ..+.+|...-..+.+..  ....+++.+.   ..+.++|-++....   .   .+  .+.....        ...+-...
T Consensus       189 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe--------a~~DFPva  260 (327)
T d1utca2         189 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--------AQNDFPVA  260 (327)
T ss_dssp             EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT--------CTTCCEEE
T ss_pred             ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc--------ccCCcEEE
Confidence            33344432222222210  0111222222   22578888875421   1   01  1111000        02355667


Q ss_pred             ecccCCCCeEEEEEecCCceEEEEEeccCCc
Q 016457          275 CHYPGEGENLWVIGGTGAGTVGYFPVNYGGA  305 (389)
Q Consensus       275 ~~~~~~~~~~~l~~g~~dg~i~i~~~~~~~~  305 (389)
                      +..++.-.  ++..-+.-|.|++||++++..
T Consensus       261 mqvs~kyg--iiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         261 MQISEKHD--VVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEETTTT--EEEEEETTSEEEEEETTTCCE
T ss_pred             EEeeccCC--EEEEEecCcEEEEEEcccccE
Confidence            77777766  556666789999999999876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.24  E-value=0.34  Score=42.44  Aligned_cols=109  Identities=12%  Similarity=0.056  Sum_probs=67.7

Q ss_pred             CeEEEEecCCeEEEEeCCCceeeeeecCCC--------CcE-EEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEEEEE
Q 016457           51 SLMAVSLSTNVVKLYSPVTGQYSGECKGHS--------STV-NQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVT  121 (389)
Q Consensus        51 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------~~v-~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  121 (389)
                      ..|++++.++.|.-.|..+|+.+.++....        ..+ ..+++. +   ..++.++.|+.+.-.|..+++.+....
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~-~---~~i~~~t~~~~l~alda~tG~~~W~~~  144 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-G---DKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-T---TEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe-C---CceEEecCCCeEEEecccccceeeeec
Confidence            367777888999999999999988764210        011 123333 2   367888999999999999999887655


Q ss_pred             cCCCC----eE--EEEEeC--CCCeEEEee-------cCCeEEEEECcCCceeeeee
Q 016457          122 AGSQE----IF--CFSFGG--STDYLLAAG-------CGSQIQFWDWRNKKQVACLE  163 (389)
Q Consensus       122 ~~~~~----v~--~~~~~~--~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~  163 (389)
                      .....    .+  -....+  ....++..+       ..+.|.-+|.++++.+.++.
T Consensus       145 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             ccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence            32110    00  011110  123333332       24678999999998877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.70  E-value=0.38  Score=38.70  Aligned_cols=188  Identities=10%  Similarity=0.034  Sum_probs=101.7

Q ss_pred             eEEEeecCCCCeEEEEec------------CCeEEEEeCCCceeee-e--ecCC-----CCcEEEEEE--eCCCCCCEEE
Q 016457           41 VFEIVPKNDWSLMAVSLS------------TNVVKLYSPVTGQYSG-E--CKGH-----SSTVNQISF--SGPSTPHVLH   98 (389)
Q Consensus        41 v~~~~~~~~~~~l~~~~~------------d~~i~iw~~~~~~~~~-~--~~~~-----~~~v~~i~~--~~~~~~~~l~   98 (389)
                      .-+|+..|+|..+++++.            .|.|.++|+.+.+... .  +.+.     .-.-..+..  .+++. .+|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~-~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT-VYLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCC-EEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCc-EEEE
Confidence            346777888876665542            3889999987643211 1  1111     011234443  33442 2455


Q ss_pred             EEe---cCCeEEEEEccCCe--E--EEEEEcC-CCCeEEEEEeCCCCeEEEee--c-C------------CeEEEEECcC
Q 016457           99 SCS---SDGTIRAWDTRSFH--E--VWSVTAG-SQEIFCFSFGGSTDYLLAAG--C-G------------SQIQFWDWRN  155 (389)
Q Consensus        99 s~~---~dg~i~iwd~~~~~--~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~-d------------~~i~iwd~~~  155 (389)
                      +..   ...+|.+|++....  .  +.++... ....+.+++..++..+++-.  . +            +...+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            543   45678888876432  2  2233322 34578888886665555411  1 1            2333444333


Q ss_pred             CceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEe
Q 016457          156 KKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLT  234 (389)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (389)
                      ++. .... ..-...+.|+++|+++.++++-+..+.|+.|++.... . ...............+.+.+.++.+ ++++
T Consensus       196 ~~~-~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~-~-l~~~~~~~l~~~pDNi~~d~~~g~l-wva~  269 (340)
T d1v04a_         196 NDV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW-T-LTPLRVLSFDTLVDNISVDPVTGDL-WVGC  269 (340)
T ss_dssp             SCE-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-C-EEEEEEEECSSEEEEEEECTTTCCE-EEEE
T ss_pred             Cce-EEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc-c-cceEEEecCCCCCCccEEecCCCEE-EEEE
Confidence            332 2222 2345678999999997566677778899999998432 1 1122223345666777776444443 3443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.47  Score=38.64  Aligned_cols=181  Identities=12%  Similarity=0.047  Sum_probs=102.8

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCC---------ceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVT---------GQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRA  108 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i  108 (389)
                      .....-++.++...+++.|+.++ +.|...+.         .......+..-..|..++|+.+    .|+.. .++.+..
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d----~l~v~-~~~~l~~  109 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD----QVLVS-TRNALYS  109 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT----EEEEE-ESSEEEE
T ss_pred             ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC----EEEEE-eCCCEEE
Confidence            34566788888777888888664 66765321         1000111111235888999743    44444 3456888


Q ss_pred             EEccCCeEEEEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeee----ecccCCeeEEEEecCCCCeEE
Q 016457          109 WDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLE----ESHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~  184 (389)
                      ++...-........-..++..+.++|  ..+++...++.+.++++..++......    ..-...+.++.|++.+. .++
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk-q~v  186 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF-QSF  186 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE-EEE
T ss_pred             EEeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE-EEE
Confidence            88776544444444456788888875  456667778999999998775432211    01235577888887775 666


Q ss_pred             EEeCCCcEEE-EecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEE
Q 016457          185 SASVDGLICT-FDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCL  233 (389)
Q Consensus       185 ~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (389)
                      ++..++ ..+ -++..    ...+......+..+.+|.|. .+..++++-
T Consensus       187 ~~~g~~-~q~k~~i~~----~~~~~~p~~~~~~v~sI~WL-~~~~F~vvy  230 (381)
T d1xipa_         187 AWRNGE-MEKQFEFSL----PSELEELPVEEYSPLSVTIL-SPQDFLAVF  230 (381)
T ss_dssp             EEETTE-EEEEEEECC----CHHHHTSCTTTSEEEEEEES-SSSEEEEEE
T ss_pred             EeCCCc-eeeccCCCC----ccccCCCcCCCcceeEEEEe-cCceEEEEE
Confidence            663222 111 12220    01111111234567899998 555555544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.14  Score=40.09  Aligned_cols=53  Identities=8%  Similarity=0.100  Sum_probs=27.3

Q ss_pred             eEEEEeCCCce--eeeeecCCCCcEEEEEEeCCCCCCEEEEEecC---------CeEEEEEccCCeEE
Q 016457           61 VVKLYSPVTGQ--YSGECKGHSSTVNQISFSGPSTPHVLHSCSSD---------GTIRAWDTRSFHEV  117 (389)
Q Consensus        61 ~i~iw~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~  117 (389)
                      .+.+||+++++  .+..+......- +++.. ++  .+++.|+..         ..+.+||..+.+..
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~--~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GG--LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TT--EEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEEE-CC--EEEEEeCcccCCCCccccchhhhccccccccc
Confidence            68899998864  232333222221 22222 34  466666531         34667787665443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.34  E-value=0.53  Score=37.91  Aligned_cols=195  Identities=7%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             CEEEEEecCCeEEEEEccCCeEEEEEEcCCCCeEEEEEeC----CC--CeEEEeec--C--CeEEEEECcC-Cceeeeee
Q 016457           95 HVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGG----ST--DYLLAAGC--G--SQIQFWDWRN-KKQVACLE  163 (389)
Q Consensus        95 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~~--d--~~i~iwd~~~-~~~~~~~~  163 (389)
                      .+++....++-|.+||+. |+.+..+..  +.++.+..-.    .+  ..+++++.  +  ..|.+|.+.. ...+..+.
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            466666677679999985 888777653  5666665431    11  22445443  2  3677887752 22333332


Q ss_pred             e------cccCCeeEEEE--ecCCCC-eEEEEeCCCcEEEEecCCCCC--CCccceeeeccCCceeeEEEecCCCcEEEE
Q 016457          164 E------SHVEDVTQVHF--VPNNQN-KVVSASVDGLICTFDTGGDIN--DDDLLESVINVGTSVGKVGFFGETNKHLWC  232 (389)
Q Consensus       164 ~------~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (389)
                      .      .....+..+++  ++.... ++++...+|.+..|.+.....  ..............+..+.+. +....|+.
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvD-de~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAAD-DEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEE-TTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEe-CCCCcEEE
Confidence            1      11224666666  555322 466677789998887742211  111222233456788899998 66678888


Q ss_pred             EecCCcEEEEEcCCC-----ceeEEeecccccccCCccCCCCCceeeeccc--CCCCeEEEEEecCCceEEEEEeccC
Q 016457          233 LTHIETLSIWDWKDG-----QNVASFENARSLASDSWTLDDVDYFVDCHYP--GEGENLWVIGGTGAGTVGYFPVNYG  303 (389)
Q Consensus       233 ~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~g~~dg~i~i~~~~~~  303 (389)
                      +-++.-|..++....     ..+....+..          ....+-.++.-  .++++.+|++.-.+.+..+||..+.
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~----------l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRH----------LTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSS----------CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ecCccceEEEEeccCCCccceeeecccCcc----------ccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            888877777765421     1221111111          22445555543  3456656677667789999998763

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.77  Score=37.34  Aligned_cols=132  Identities=11%  Similarity=-0.018  Sum_probs=74.5

Q ss_pred             cceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEEE
Q 016457           39 DYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVW  118 (389)
Q Consensus        39 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  118 (389)
                      ..|..++|+.+  .|++.. ++.+..++...-........-..++..+.++|.    .++....++.+.++++..++...
T Consensus        87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~~  159 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ  159 (381)
T ss_dssp             TTEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc----eeEEEecCCCEEEEEeccCcccc
Confidence            35888999765  455554 567888877654333333334567888888875    46666778999999998875433


Q ss_pred             EEEc-----CCCCeEEEEEeCCCCeEEEeecCCeEEEE-ECcCCceeeeeeecccCCeeEEEEecCC
Q 016457          119 SVTA-----GSQEIFCFSFGGSTDYLLAAGCGSQIQFW-DWRNKKQVACLEESHVEDVTQVHFVPNN  179 (389)
Q Consensus       119 ~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~  179 (389)
                      ...+     -...+.+++|++.+..++++.. +...+- ++.....+.... .....+.+|.|..+.
T Consensus       160 ~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g-~~~q~k~~i~~~~~~~~p~-~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         160 LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELP-VEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEESEEEEEECSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSC-TTTSEEEEEEESSSS
T ss_pred             ccCCcceEEecCCceEEEEeCCcEEEEEeCC-CceeeccCCCCccccCCCc-CCCcceeEEEEecCc
Confidence            2211     1356777777755555555422 222111 111111111000 123467888888764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.96  E-value=2.1  Score=31.27  Aligned_cols=222  Identities=13%  Similarity=0.068  Sum_probs=110.8

Q ss_pred             CCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEE------ecCCeEEEEEccCCeEEEEEEc
Q 016457           49 DWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSC------SSDGTIRAWDTRSFHEVWSVTA  122 (389)
Q Consensus        49 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~------~~dg~i~iwd~~~~~~~~~~~~  122 (389)
                      +.++++++...|.+.++-+..++.+..-   ..+|..... |...-.++.-+      -.-..|.+-++...-....+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            3358888888999999988777655432   234432222 22110122211      1112344444442222223333


Q ss_pred             CC-CCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceee--eee------ecccCCeeEEEEecCCCCeEEEEeC-CCcE
Q 016457          123 GS-QEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVA--CLE------ESHVEDVTQVHFVPNNQNKVVSASV-DGLI  192 (389)
Q Consensus       123 ~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~------~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i  192 (389)
                      .. -.|.+++.. +.+..+++++.....+|-++.++...  .+.      +-...-|..+.+-.-++.-++++.- .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            32 567788886 66677777778888888887775432  222      0112223333333222223444443 6666


Q ss_pred             EEEecCCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecC---CcEEEEEcCCCceeEEeecccccccCCccCCCC
Q 016457          193 CTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHI---ETLSIWDWKDGQNVASFENARSLASDSWTLDDV  269 (389)
Q Consensus       193 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (389)
                      ++++..               ++.++...+. ++.+ +++.-..   ....-+|+++++....-...+....     -..
T Consensus       180 ri~tpk---------------eGS~~~ay~~-~gnK-V~sdyEt~gEsywit~D~~s~~yerve~P~kd~~s-----y~p  237 (313)
T d2hu7a1         180 RVFDSG---------------EGSFSSASIS-PGMK-VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSS-----YRP  237 (313)
T ss_dssp             EEECCS---------------SEEEEEEEEC-TTSC-EEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHH-----HCC
T ss_pred             EEecCC---------------CCcccceeEc-cCce-eeeccCCCCceEEEEEecccCceeeeecCccccee-----ecc
Confidence            666655               3344444444 3333 2332221   1222457776644332111110000     012


Q ss_pred             CceeeecccCCCCeEEEEEecCCceEEEEE
Q 016457          270 DYFVDCHYPGEGENLWVIGGTGAGTVGYFP  299 (389)
Q Consensus       270 ~~i~~~~~~~~~~~~~l~~g~~dg~i~i~~  299 (389)
                      -.|.-+-+.|+++  +++.+-.||.=.+|.
T Consensus       238 ~~I~~~~Y~Pdd~--L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         238 TAITWLGYLPDGR--LAVVARREGRSAVFI  265 (313)
T ss_dssp             SEEEEEEECTTSC--EEEEEEETTEEEEEE
T ss_pred             eEEEeeeeCCCCc--EEEEEecCCchheee
Confidence            3455566899998  767778899988885

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.50  E-value=3.9  Score=33.67  Aligned_cols=99  Identities=11%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             CcEEEEEEeCCCCCCEEE-EEecCC----eEEEEEccCCeEEEE-EEcCCCCeEEEEEeCCCCeEEEeecC---------
Q 016457           81 STVNQISFSGPSTPHVLH-SCSSDG----TIRAWDTRSFHEVWS-VTAGSQEIFCFSFGGSTDYLLAAGCG---------  145 (389)
Q Consensus        81 ~~v~~i~~~~~~~~~~l~-s~~~dg----~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d---------  145 (389)
                      -.+...+++|++  ++++ +-+.+|    .|+++|+.+++.+.. +..  .....++|.+++..++....+         
T Consensus       125 ~~~~~~~~Spd~--~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         125 VALRGYAFSEDG--EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEEEECTTS--SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ceecceEecCCC--CEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            345567789998  5655 444444    699999999987642 221  223568899888888765432         


Q ss_pred             -------CeEEEEECcCCcee--eeeee-cccCCeeEEEEecCCCCeEE
Q 016457          146 -------SQIQFWDWRNKKQV--ACLEE-SHVEDVTQVHFVPNNQNKVV  184 (389)
Q Consensus       146 -------~~i~iwd~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~  184 (389)
                             ..|..+.+.+...-  ..+.. .....+..+..+++++ +++
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~-~l~  248 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVL  248 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcc-eee
Confidence                   36788887765332  22221 1223466777888886 544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.69  E-value=4.7  Score=32.00  Aligned_cols=157  Identities=9%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             EEEEEEeCCCCCCEEEEEec------------CCeEEEEEccCCeE-E--EEEEcCC-----CCeEEEEE--eCCCC-eE
Q 016457           83 VNQISFSGPSTPHVLHSCSS------------DGTIRAWDTRSFHE-V--WSVTAGS-----QEIFCFSF--GGSTD-YL  139 (389)
Q Consensus        83 v~~i~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~-~--~~~~~~~-----~~v~~~~~--~~~~~-~l  139 (389)
                      .-+|+..|++  ..+++++.            .|.|.++|+.+... .  ..+.+..     -....+.+  .+++. +|
T Consensus        37 ~EDi~~~~dg--~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECTTS--EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECCCC--cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            3457777777  44444431            48899999876432 1  1222211     12344443  33444 34


Q ss_pred             EEee---cCCeEEEEECcCCce----eeeeeecccCCeeEEEEecCCCCeEEEEeC---------------CCcEEEEec
Q 016457          140 LAAG---CGSQIQFWDWRNKKQ----VACLEESHVEDVTQVHFVPNNQNKVVSASV---------------DGLICTFDT  197 (389)
Q Consensus       140 ~~~~---~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------d~~i~i~d~  197 (389)
                      ++..   ...+|.+|++.....    +.++........+.+++..++. +++|-..               -+.-.+|..
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            4443   356888888764432    2233322334578899888885 7776311               122333333


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCc-EEEEEecCCcEEEEEcCCCc
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNK-HLWCLTHIETLSIWDWKDGQ  248 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  248 (389)
                      ..+     ........-...+.++++ ++++ ++++-+..++|+.|++....
T Consensus       194 ~~~-----~~~~~~~~l~~pNGI~~s-~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         194 SPN-----DVRVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CSS-----CEEEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cCC-----ceEEEcCCCCccceeEEC-CCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            322     122222233567899999 5554 45556667899999987544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=4.5  Score=30.73  Aligned_cols=213  Identities=9%  Similarity=0.019  Sum_probs=91.8

Q ss_pred             CeEEEEecCc-eeeeeec-Cc--ceEEEeecCCCCeEEEEec---------CCeEEEEeCCCceeee--eecCCCCcEEE
Q 016457           21 NSIKRFGLKN-SIQTNFG-DD--YVFEIVPKNDWSLMAVSLS---------TNVVKLYSPVTGQYSG--ECKGHSSTVNQ   85 (389)
Q Consensus        21 ~~i~~w~~~~-~~~~~~~-~~--~v~~~~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~--~~~~~~~~v~~   85 (389)
                      ..+.+||..+ ....+.. ..  .=.+++.. ++.+++.|+.         -..+.+||..+.+...  .+......-.+
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            4688888764 2233322 11  11122222 4556666653         2356788876553322  11111111112


Q ss_pred             EEEeCCCCCCEEEEEecCCe-----EEEEEccCCeEEEEEEcC--CCCeEEEEEeCCCCeEEEeec-----CCeEEEEEC
Q 016457           86 ISFSGPSTPHVLHSCSSDGT-----IRAWDTRSFHEVWSVTAG--SQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDW  153 (389)
Q Consensus        86 i~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~  153 (389)
                       +.. ++  ..++.++.++.     ...++..+......-...  .... ++... .+..++.++.     ...+..||.
T Consensus        98 -~~~-~~--~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~  171 (288)
T d1zgka1          98 -GVI-DG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYP  171 (288)
T ss_dssp             -EEE-TT--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEET
T ss_pred             -ccc-ce--eeEEecceecccccceeeeeccccCccccccccccccccc-eeeee-eecceEecCcccccccceEEEeec
Confidence             222 44  45555554443     344565554432211111  1111 22222 3444455544     246788888


Q ss_pred             cCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCC-----CcEEEEecCCCCCCCccceeeeccCCceeeEEEecCCCc
Q 016457          154 RNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVD-----GLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNK  228 (389)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (389)
                      .+.+....-.........+..... + .+++.|+.+     .....+|..+..  ...+... .....-.+++..  +++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~i~GG~~~~~~~~~~~~~~~~~~~--~~~~~~~-p~~r~~~~~~~~--~~~  244 (288)
T d1zgka1         172 ERNEWRMITAMNTIRSGAGVCVLH-N-CIYAAGGYDGQDQLNSVERYDVETET--WTFVAPM-KHRRSALGITVH--QGR  244 (288)
T ss_dssp             TTTEEEECCCCSSCCBSCEEEEET-T-EEEEECCBCSSSBCCCEEEEETTTTE--EEECCCC-SSCCBSCEEEEE--TTE
T ss_pred             ccccccccccccccccccccccee-e-eEEEecCccccccccceeeeeeccee--eecccCc-cCcccceEEEEE--CCE
Confidence            765433221101111222333333 3 266665544     345677776431  1111100 111111233333  466


Q ss_pred             EEEEEecCC-----cEEEEEcCCC
Q 016457          229 HLWCLTHIE-----TLSIWDWKDG  247 (389)
Q Consensus       229 ~l~~~~~d~-----~i~i~d~~~~  247 (389)
                      +++.|+.++     .+.+||+.+.
T Consensus       245 l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         245 IYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEEEecCCCCeecceEEEEECCCC
Confidence            777776554     4778888765

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=83.80  E-value=7.3  Score=29.51  Aligned_cols=184  Identities=14%  Similarity=-0.005  Sum_probs=88.1

Q ss_pred             CcceEEEeecCCCCeEEEEecCCeEEEEeCCCceeeeeecCCCCcEEEEEEeCCCCCCEEEEEecCCeEEEEEccCCeEE
Q 016457           38 DDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV  117 (389)
Q Consensus        38 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  117 (389)
                      ...|..++-...  ..+. ..||.|..|-....-.+..-......|..|+--. .  ..++.  .|+.+..|.....-.+
T Consensus        25 ~~~i~~va~G~~--h~~a-l~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~--~~~al--~dg~v~~wG~~~~gq~   96 (273)
T d1jtdb_          25 QSGVDAIAGGYF--HGLA-LKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-Y--HSLAL--KDGEVIAWGGNEDGQT   96 (273)
T ss_dssp             SSSEEEEEECSS--EEEE-EETTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-S--EEEEE--ETTEEEEEECCTTSTT
T ss_pred             CCCcEEEEccCC--EEEE-EECCEEEEEeCCCCCceeeeecccccceEEecCC-C--ceeee--eeeeeeccCCCcceee
Confidence            455777765322  2222 3489999996554322222122334565665432 2  23332  4899999975432111


Q ss_pred             EEEEcCCCCeEEEEEeCCCCeEEEeecCCeEEEEECcCCceeeeeeecccCCeeEEEEecCCCCeEEEEeCCCcEEEEec
Q 016457          118 WSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHVEDVTQVHFVPNNQNKVVSASVDGLICTFDT  197 (389)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (389)
                      ..-......+..++..  ....+ .-.|+.+..|.-.......... .....|..++-..    .......++.++.|-.
T Consensus        97 ~~~~~~~~~~~~i~~~--~~~~~-~~~dg~v~~~g~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~~~g~~~~~G~  168 (273)
T d1jtdb_          97 TVPAEARSGVDAIAAG--AWASY-ALKDGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGV----YTALAVKNGGVIAWGD  168 (273)
T ss_dssp             CCCGGGGSSCCEEEEE--TTEEE-EEETTEEEEEECCTTSTTSCCG-GGGSSEEEEEECS----SEEEEEETTEEEEEEC
T ss_pred             ccccccccceeEEeee--ccccc-ccccccceecccCCCCceeeec-cCCceEEEEeccc----eeeeeecccceeEeec
Confidence            1001112334455543  22222 2347899999744332221111 1233455444322    2233345788888876


Q ss_pred             CCCCCCCccceeeeccCCceeeEEEecCCCcEEEEEecCCcEEEEEcC
Q 016457          198 GGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWK  245 (389)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~i~d~~  245 (389)
                      ....    ...........|..|+.. . ...++ -. ||.|+.|=..
T Consensus       169 ~~~g----~~~~~~~~~~~v~~Is~G-~-~h~~~-l~-dG~v~~WG~n  208 (273)
T d1jtdb_         169 NYFG----QTTVPAEAQSGVDDVAGG-I-FHSLA-LK-DGKVIAWGDN  208 (273)
T ss_dssp             CTTS----TTSCCGGGSSSEEEEEEC-S-SEEEE-EE-TTEEEEEECC
T ss_pred             ccCC----cccccccccCCccceecc-c-eeeEE-Ee-cCcEEEcCCC
Confidence            5321    111122234567777654 2 22333 33 7999999654