Citrus Sinensis ID: 016478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MAMSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEccHHHHHccccccccccHHHHHHHHHcccEEEEEEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEccccccHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHccccccEccccccccccccccHcccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEccHHHHHccccccccccHHHHHHHHHcccEEEEEEcccccEEcccccEEEEcccEEEEccccccEEEEEccccEEEEEEcccccccHHHHHHHHHHHHccccccccHHHHHHccccccccccccccHHHcHHHcc
Coil and Loop (DISEMBL)
MAMSQMASTLASPLSFLLLRhslspyiprqhsvssplskhqhshqilcakkssssnnskqqkpkaqtassslgpkagvaiykpksYEVLAADAANSLAFALQdgktrleidfpplpsnissykgssdefIDANIQLALAVVRKLQERMETracivfpdkpekgRASRLFKRALDsidgitigslddvptgAVRSFFSSIRntldfdfddqeegrwqsdepptlyVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADlgilgfpskdlHYRFLSQFTPVFYIRIReysktvpvapftinysgalfrqypgpwqvmLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS
Flexible Loop (DISEMBL)
MAMSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAkkssssnnskqqkpkaqtassslgpkaGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETracivfpdkpekgraSRLFKRaldsidgitigslddvptGAVRSFFSSIRNTLDFDFDDQEegrwqsdepptlYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESetrftlsetKEELLRVLglqeeegsslqFLRRGYknatwweedvdlelssawrs
Low Complexity Region (SEG)
MAMSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAkkssssnnskqqkpkAQTASSSLGPKAGVAIYKPKSYEVlaadaanslafalQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS
Disordered region (IsUnstruct)
**************SFLLLRHS*******************************************************VAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPP************DEFIDANIQLALAVVRKLQERMETRACIVFPD******ASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDD*****W****PPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDL********
Disordered Region (DISOPRED)
*******************************************************************************IYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFD***********DEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEE********************GYKNATWWEEDVDLE*******
Disordered Region (DISEMBL)
**********ASPLSFLLLRHSLSPYIP********************************************GPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDL********
Disordered Region (DISPRO)
**************SF*LLRHSLSPYIP*QHSVSSPLSKH***HQILCA****************************VAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEED***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
255543323	385	conserved hypothetical protein [Ricinus	0.964	0.974	0.755	1e-167
224115852	381	predicted protein [Populus trichocarpa]	0.899	0.918	0.793	1e-165
225443166	378	PREDICTED: uncharacterized protein LOC10	0.812	0.835	0.841	1e-159
298204679	374	unnamed protein product [Vitis vinifera]	0.812	0.844	0.841	1e-158
363807938	381	uncharacterized protein LOC100803725 [Gl	0.976	0.997	0.723	1e-157
357467949	375	hypothetical protein MTR_4g007190 [Medic	0.866	0.898	0.762	1e-156
449528829	388	PREDICTED: uncharacterized LOC101213889	0.848	0.850	0.796	1e-155
449436191	388	PREDICTED: uncharacterized protein LOC10	0.843	0.845	0.798	1e-154
18410256	358	low PSII accumulation 3 protein [Arabido	0.830	0.902	0.795	1e-146
21537091	358	unknown [Arabidopsis thaliana]	0.830	0.902	0.792	1e-145

>gi|255543323|ref|XP_002512724.1| conserved hypothetical protein [Ricinus communis] gi|223547735|gb|EEF49227.1| conserved hypothetical protein [Ricinus communis]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/392 (75%), Positives = 329/392 (83%), Gaps = 17/392 (4%)

Query: 1   MAMSQMASTLASPLSFLLLRHSLSPYIPRQ--HSVSSPLSKHQH-SHQILCAKKSSSSNN 57
           MA S + S   +PL F        P+ PR    SVS  L K  + + +I C      SN 
Sbjct: 8   MASSALPSISRTPLFF--------PHSPRTLLFSVSPSLQKLPYPTIRIQC------SNT 53

Query: 58  SKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPS 117
           SKQQ+     ++S+L P+ GV++YKPKSY+VLA DAAN LA+ALQDGKTRLEIDFPPLPS
Sbjct: 54  SKQQEESQSQSTSNLNPRKGVSVYKPKSYDVLANDAANCLAYALQDGKTRLEIDFPPLPS 113

Query: 118 NISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSID 177
           NISSYKGSSDEFIDANIQLALA++RKLQE+ ETRACIVFPDKPEK RAS LFK ALDSID
Sbjct: 114 NISSYKGSSDEFIDANIQLALAIIRKLQEKKETRACIVFPDKPEKRRASELFKAALDSID 173

Query: 178 GITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVI 237
           GITIGSLDDVP+G V +FF S+RNTLDFDF+D  EGRWQSDEPP+LYVFINCSTRELSVI
Sbjct: 174 GITIGSLDDVPSGPVSNFFKSVRNTLDFDFEDDNEGRWQSDEPPSLYVFINCSTRELSVI 233

Query: 238 EKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTV 297
           EKYVE FA STPALLFNLELDTLRADLG+LGFP+KDLHYRFLSQF PVFYIRIREYSKTV
Sbjct: 234 EKYVENFAGSTPALLFNLELDTLRADLGLLGFPTKDLHYRFLSQFIPVFYIRIREYSKTV 293

Query: 298 PVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEE 357
            VAP+ +NYSGALFRQYPGPWQVMLKQ+D SYACVAES TRFTL ETKEELLRVLGLQEE
Sbjct: 294 AVAPYIVNYSGALFRQYPGPWQVMLKQSDGSYACVAESATRFTLGETKEELLRVLGLQEE 353

Query: 358 EGSSLQFLRRGYKNATWWEEDVDLELSSAWRS 389
           EGSSL+FLRRGYK+ATWWEE+V+LE SS WR+
Sbjct: 354 EGSSLEFLRRGYKSATWWEEEVELEASSEWRN 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115852|ref|XP_002332073.1| predicted protein [Populus trichocarpa] gi|222831959|gb|EEE70436.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/359 (79%), Positives = 314/359 (87%), Gaps = 9/359 (2%)

Query: 31  HSVSSPLSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLA 90
            S S  LSK  ++ +I CA      N +KQQK  +QT  S   PK+GVA+YKPKSYEVL 
Sbjct: 32  RSPSPTLSKLSYTTKIQCA------NTNKQQK--SQTTQSH-DPKSGVAVYKPKSYEVLV 82

Query: 91  ADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMET 150
            DAANSLAF+LQDGK RLEIDFPPLPSNISSYKGSSDEFIDANIQLALAV+RKLQE+ ET
Sbjct: 83  TDAANSLAFSLQDGKIRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVIRKLQEKRET 142

Query: 151 RACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQ 210
           RAC+VFPDKPE  RA R+FK ALDSIDGITIGSLDD+P+G V +FF S+RNTLDFDF+D 
Sbjct: 143 RACVVFPDKPEMLRACRIFKTALDSIDGITIGSLDDIPSGPVTTFFKSVRNTLDFDFEDD 202

Query: 211 EEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFP 270
            EGRWQS+EPP+LYVFINCSTRELSVIEKYVEKFA STP LLFNLELDTLRADLG+LGFP
Sbjct: 203 SEGRWQSNEPPSLYVFINCSTRELSVIEKYVEKFATSTPTLLFNLELDTLRADLGLLGFP 262

Query: 271 SKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYA 330
           +KDLHYRFLSQF PVFYIRIREYSKT+ VAP+ +NYSGALFRQYPGPWQVMLKQAD SYA
Sbjct: 263 TKDLHYRFLSQFIPVFYIRIREYSKTIGVAPYIVNYSGALFRQYPGPWQVMLKQADGSYA 322

Query: 331 CVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS 389
           CVAES TRFTL ETKEELLRVLGLQEE+G+SL+FLRRGYK+ATWWEEDV+LE SS WRS
Sbjct: 323 CVAESATRFTLGETKEELLRVLGLQEEQGTSLEFLRRGYKSATWWEEDVELETSSDWRS 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443166|ref|XP_002264352.1| PREDICTED: uncharacterized protein LOC100263772 [Vitis vinifera]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 291/316 (92%)

Query: 74  PKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDAN 133
           PK GV++YKPKSYEVL  DAANSLA+AL DGKTRLEIDFPPLPSN+SSYKGSSDEFIDAN
Sbjct: 63  PKVGVSVYKPKSYEVLVTDAANSLAYALDDGKTRLEIDFPPLPSNMSSYKGSSDEFIDAN 122

Query: 134 IQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVR 193
           IQL LAVVRKLQER ET+ACIVFPDKPEK RAS++FK ALDSIDGI+IGSLDDVP+G V 
Sbjct: 123 IQLVLAVVRKLQERKETKACIVFPDKPEKRRASQIFKTALDSIDGISIGSLDDVPSGPVA 182

Query: 194 SFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLF 253
           +FF SIR+TLDFDF+D  EGRW+S E P+LY+FINCSTREL+ IEK+VEKFA STP LLF
Sbjct: 183 TFFRSIRDTLDFDFEDDNEGRWESKEAPSLYIFINCSTRELAAIEKFVEKFAPSTPTLLF 242

Query: 254 NLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQ 313
           NLELDTLRADLG+LGFP+KDLHYRFLSQF PVFYIRIREYSKTV VAP+ +NYSGALFRQ
Sbjct: 243 NLELDTLRADLGLLGFPTKDLHYRFLSQFVPVFYIRIREYSKTVAVAPYIVNYSGALFRQ 302

Query: 314 YPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNAT 373
           YPGPWQVMLKQAD SYACVAES TRFTL ETKEELLRVLGLQEEEGSSL+FLRRGYK++T
Sbjct: 303 YPGPWQVMLKQADGSYACVAESATRFTLGETKEELLRVLGLQEEEGSSLEFLRRGYKSST 362

Query: 374 WWEEDVDLELSSAWRS 389
           WWEEDV+LE SSAWRS
Sbjct: 363 WWEEDVELESSSAWRS 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204679|emb|CBI25177.3| unnamed protein product [Vitis vinifera]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 291/316 (92%)

Query: 74  PKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDAN 133
           PK GV++YKPKSYEVL  DAANSLA+AL DGKTRLEIDFPPLPSN+SSYKGSSDEFIDAN
Sbjct: 59  PKVGVSVYKPKSYEVLVTDAANSLAYALDDGKTRLEIDFPPLPSNMSSYKGSSDEFIDAN 118

Query: 134 IQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVR 193
           IQL LAVVRKLQER ET+ACIVFPDKPEK RAS++FK ALDSIDGI+IGSLDDVP+G V 
Sbjct: 119 IQLVLAVVRKLQERKETKACIVFPDKPEKRRASQIFKTALDSIDGISIGSLDDVPSGPVA 178

Query: 194 SFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLF 253
           +FF SIR+TLDFDF+D  EGRW+S E P+LY+FINCSTREL+ IEK+VEKFA STP LLF
Sbjct: 179 TFFRSIRDTLDFDFEDDNEGRWESKEAPSLYIFINCSTRELAAIEKFVEKFAPSTPTLLF 238

Query: 254 NLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQ 313
           NLELDTLRADLG+LGFP+KDLHYRFLSQF PVFYIRIREYSKTV VAP+ +NYSGALFRQ
Sbjct: 239 NLELDTLRADLGLLGFPTKDLHYRFLSQFVPVFYIRIREYSKTVAVAPYIVNYSGALFRQ 298

Query: 314 YPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLRRGYKNAT 373
           YPGPWQVMLKQAD SYACVAES TRFTL ETKEELLRVLGLQEEEGSSL+FLRRGYK++T
Sbjct: 299 YPGPWQVMLKQADGSYACVAESATRFTLGETKEELLRVLGLQEEEGSSLEFLRRGYKSST 358

Query: 374 WWEEDVDLELSSAWRS 389
           WWEEDV+LE SSAWRS
Sbjct: 359 WWEEDVELESSSAWRS 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807938|ref|NP_001242453.1| uncharacterized protein LOC100803725 [Glycine max] gi|255642243|gb|ACU21386.1| unknown [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/390 (72%), Positives = 316/390 (81%), Gaps = 10/390 (2%)

Query: 1   MAMSQMASTLASPLSFLLLRH-SLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSK 59
           M M+   S+ +  L+FLL R  SL P      S S      ++     CAK  S      
Sbjct: 1   MVMAMAISSPSYNLTFLLPRSGSLQPLSLTPPSCSFFAQPLRNLPLKFCAKIQSVGVG-- 58

Query: 60  QQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNI 119
           ++ P +        PKAGV++YKPKSYEVL +DAANSL++ALQDGK RLEIDFPPLPSNI
Sbjct: 59  REGPASD-------PKAGVSLYKPKSYEVLVSDAANSLSYALQDGKLRLEIDFPPLPSNI 111

Query: 120 SSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGI 179
           SSYKGSSDEFIDANIQLALAVVRKL+E+ ETRACIVFPDKPEK RA +LFK ALDSIDGI
Sbjct: 112 SSYKGSSDEFIDANIQLALAVVRKLKEKKETRACIVFPDKPEKRRACQLFKAALDSIDGI 171

Query: 180 TIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEK 239
           TIGSLDDVPTG + SFF S+RNTLDFDF+D  EGRWQS EPP+LY+FINCSTREL+ IEK
Sbjct: 172 TIGSLDDVPTGPMTSFFRSVRNTLDFDFEDDNEGRWQSSEPPSLYIFINCSTRELAYIEK 231

Query: 240 YVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPV 299
           YVEKFA STP LLFNLELDTLRADLG+ GF +KDLHYRFLSQFTPVFYIRIREYSKTV +
Sbjct: 232 YVEKFATSTPTLLFNLELDTLRADLGLPGFSAKDLHYRFLSQFTPVFYIRIREYSKTVAI 291

Query: 300 APFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEG 359
           AP+ +NYSGA+FRQYPGPWQVMLKQAD SYAC+AES  RF+L E KEELLRVLGLQEEEG
Sbjct: 292 APYIVNYSGAVFRQYPGPWQVMLKQADGSYACIAESANRFSLGEAKEELLRVLGLQEEEG 351

Query: 360 SSLQFLRRGYKNATWWEEDVDLELSSAWRS 389
           SSL+FLRRGYK +TWWEED D E+SSAWRS
Sbjct: 352 SSLEFLRRGYKASTWWEEDFDSEVSSAWRS 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467949|ref|XP_003604259.1| hypothetical protein MTR_4g007190 [Medicago truncatula] gi|355505314|gb|AES86456.1| hypothetical protein MTR_4g007190 [Medicago truncatula]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/345 (76%), Positives = 298/345 (86%), Gaps = 8/345 (2%)

Query: 45  QILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDG 104
           +I C K    +++S   +           PK+GV++YKPKSYEVLA DAANSL FALQDG
Sbjct: 39  KIKCIKTEREASSSDPNR--------GFDPKSGVSVYKPKSYEVLATDAANSLNFALQDG 90

Query: 105 KTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGR 164
           K R+EIDFPPLPSNISSYKGSSD+FIDANIQL LAVV+KLQE+ ETRAC+VFPDKPEK R
Sbjct: 91  KLRIEIDFPPLPSNISSYKGSSDDFIDANIQLVLAVVKKLQEKKETRACVVFPDKPEKLR 150

Query: 165 ASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLY 224
           AS+LFK ALDS+DG+TIGSLDD+P G V SFF S+RNTLDFDF+D+ EGRWQS EPP+LY
Sbjct: 151 ASQLFKAALDSVDGLTIGSLDDIPAGPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLY 210

Query: 225 VFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTP 284
           +FINCSTREL  IEKYVEKFA STP LLFNLELDTLRADLG+LGFP KDL YRFLSQFTP
Sbjct: 211 IFINCSTRELGYIEKYVEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTP 270

Query: 285 VFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSET 344
           VFYIRIR+YSKT+ VAP+ +NYSGA+FRQYPGPWQVMLKQAD SYACVAES TRFTL E 
Sbjct: 271 VFYIRIRDYSKTIAVAPYIVNYSGAVFRQYPGPWQVMLKQADGSYACVAESATRFTLGEA 330

Query: 345 KEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS 389
           KEELLRVLGLQEE GSSL+FLRRGY+++TWWEED +LE+SSAWR+
Sbjct: 331 KEELLRVLGLQEEVGSSLEFLRRGYRSSTWWEEDSELEVSSAWRT 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528829|ref|XP_004171405.1| PREDICTED: uncharacterized LOC101213889 [Cucumis sativus]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/330 (79%), Positives = 291/330 (88%)

Query: 60  QQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNI 119
           + K +A   +    PKAGV IYKPK+YEVL +DAANSLA+AL+DGK RLEIDFPPLPSNI
Sbjct: 59  RDKERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 118

Query: 120 SSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGI 179
           SSYKGSSD+FIDANIQLALAV R LQE+   R+CIVFPDKPEK RAS+LFK ALDSIDGI
Sbjct: 119 SSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGI 178

Query: 180 TIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEK 239
           T+ SLDDVP GAV SFF S+RNTLDFDF+D   GRW S +PP+LY+FINCSTREL +IEK
Sbjct: 179 TVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEK 238

Query: 240 YVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPV 299
           YVE FA S PALLFNLEL+TLRADLG+LGFP KDLHYRFLSQF PVFYIRIREYSKTV V
Sbjct: 239 YVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 298

Query: 300 APFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEG 359
           AP+ +NYSGALFRQYPGPWQVMLKQ+D+SYACVAESETRFTL ETK+ELLRVLGLQEE+G
Sbjct: 299 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 358

Query: 360 SSLQFLRRGYKNATWWEEDVDLELSSAWRS 389
           SSL+FLRRGYK ATWWEEDVD E+SSAWRS
Sbjct: 359 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436191|ref|XP_004135877.1| PREDICTED: uncharacterized protein LOC101213889 [Cucumis sativus]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/328 (79%), Positives = 289/328 (88%)

Query: 62  KPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISS 121
           K +A   +    PKAGV IYKPK+YEVL +DAANSLA+AL+DGK RLEIDFPPLPSNISS
Sbjct: 61  KERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISS 120

Query: 122 YKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITI 181
           YKGSSD+FIDANIQLALAV R LQE+   R+CIVFPDKPEK RAS+LFK ALDSIDGIT+
Sbjct: 121 YKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGITV 180

Query: 182 GSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYV 241
            SLDDVP GAV SFF S+RNTLDFDF+D   GRW S +PP+LY+FINCSTREL +IEKYV
Sbjct: 181 SSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYV 240

Query: 242 EKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAP 301
           E FA S PALLFNLEL+TLRADLG+LGFP KDLHYRFLSQF PVFYIRIREYSKTV VAP
Sbjct: 241 ETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVAP 300

Query: 302 FTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSS 361
           + +NYSGALFRQY GPWQVMLKQ+D+SYACVAESETRFTL ETK+ELLRVLGLQEE+GSS
Sbjct: 301 YIVNYSGALFRQYAGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSS 360

Query: 362 LQFLRRGYKNATWWEEDVDLELSSAWRS 389
           L+FLRRGYK ATWWEEDVD E+SSAWRS
Sbjct: 361 LEFLRRGYKAATWWEEDVDSEVSSAWRS 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410256|ref|NP_565054.1| low PSII accumulation 3 protein [Arabidopsis thaliana] gi|25082946|gb|AAN72020.1| Unknown protein [Arabidopsis thaliana] gi|31711852|gb|AAP68282.1| At1g73060 [Arabidopsis thaliana] gi|332197288|gb|AEE35409.1| low PSII accumulation 3 protein [Arabidopsis thaliana]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/323 (79%), Positives = 289/323 (89%)

Query: 67  TASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSS 126
           + SS+  P+ GV +YKPKSYEVLA DAANSLAFALQD K+RLEIDFPPLPS+ISSYKGSS
Sbjct: 36  STSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSS 95

Query: 127 DEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDD 186
           D+FIDANIQLA+ VVRKLQE++ETRACIVFPDKPEK RAS+ FK A DS+DGI+IGSLDD
Sbjct: 96  DDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDD 155

Query: 187 VPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAM 246
           +P  +V +FF SIR+TLDFDF+D+ EG W+  EPPTLY+FINCSTRELS IEK+VE FA 
Sbjct: 156 IPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFAS 215

Query: 247 STPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINY 306
           STPALLFNLELDTLRADLG+LGFP KDLHYRFLSQF PVFYIR REYSKTV VAPF +NY
Sbjct: 216 STPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNY 275

Query: 307 SGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLR 366
           +GALFRQYPGPWQVMLKQ D S+ACVAES TRFTL ETKEELL+VLGLQEE+GSSL+FLR
Sbjct: 276 NGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLR 335

Query: 367 RGYKNATWWEEDVDLELSSAWRS 389
           RGYK+ATWWEEDV+LE SS WR+
Sbjct: 336 RGYKSATWWEEDVELEASSNWRN 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537091|gb|AAM61432.1| unknown [Arabidopsis thaliana]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/323 (79%), Positives = 289/323 (89%)

Query: 67  TASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSS 126
           + SS+  P+ GV +YKPKSYEVLA DAANSLAFALQD K+RLEIDFPPLPS+ISSYKGSS
Sbjct: 36  STSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSS 95

Query: 127 DEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDD 186
           D+FIDANIQLA+ VVRKLQE++ETRACIVFPDKPEK RAS+ FK A DS+DGI+IGSLDD
Sbjct: 96  DDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDD 155

Query: 187 VPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAM 246
           +P  +V +FF SIR+TLDFDF+++ EG W+  EPPTLY+FINCSTRELS IEK+VE FA 
Sbjct: 156 IPGTSVTNFFRSIRSTLDFDFENENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFAS 215

Query: 247 STPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINY 306
           STPALLFNLELDTLRADLG+LGFP KDLHYRFLSQF PVFYIR REYSKTV VAPF +NY
Sbjct: 216 STPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNY 275

Query: 307 SGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLR 366
           +GALFRQYPGPWQVMLKQ D S+ACVAES TRFTL ETKEELL+VLGLQEE+GSSL+FLR
Sbjct: 276 NGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLR 335

Query: 367 RGYKNATWWEEDVDLELSSAWRS 389
           RGYK+ATWWEEDV+LE SS WR+
Sbjct: 336 RGYKSATWWEEDVELEASSNWRN 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2032662	358	LPA3 "AT1G73060" [Arabidopsis	0.830	0.902	0.758	6.2e-133
TAIR|locus:2156504	316	AT5G48790 "AT5G48790" [Arabido	0.437	0.537	0.277	7.6e-05

TAIR|locus:2032662 LPA3 "AT1G73060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
 Identities = 245/323 (75%), Positives = 277/323 (85%)

Query:    67 TASSSLGPKAGVAIYKPKSYEVXXXXXXXXXXXXXQDGKTRLEIDFPPLPSNISSYKGSS 126
             + SS+  P+ GV +YKPKSYEV             QD K+RLEIDFPPLPS+ISSYKGSS
Sbjct:    36 STSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSS 95

Query:   127 DEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDD 186
             D+FIDANIQLA+ VVRKLQE++ETRACIVFPDKPEK RAS+ FK A DS+DGI+IGSLDD
Sbjct:    96 DDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDD 155

Query:   187 VPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAM 246
             +P  +V +FF SIR+TLDFDF+D+ EG W+  EPPTLY+FINCSTRELS IEK+VE FA 
Sbjct:   156 IPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFAS 215

Query:   247 STPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINY 306
             STPALLFNLELDTLRADLG+LGFP KDLHYRFLSQF PVFYIR REYSKTV VAPF +NY
Sbjct:   216 STPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNY 275

Query:   307 SGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQEEEGSSLQFLR 366
             +GALFRQYPGPWQVMLKQ D S+ACVAES TRFTL ETKEELL+VLGLQEE+GSSL+FLR
Sbjct:   276 NGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLR 335

Query:   367 RGYKNATWWEEDVDLELSSAWRS 389
             RGYK+ATWWEEDV+LE SS WR+
Sbjct:   336 RGYKSATWWEEDVELEASSNWRN 358

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009571 "proplastid stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

TAIR|locus:2156504 AT5G48790 "AT5G48790" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 56/202 (27%), Positives = 95/202 (47%)

Query:   160 PEKGRASRLF-------KRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEE 212
             PEK R++R+F       K A  ++ G T   LD +      S F       DF F ++ +
Sbjct:   132 PEKARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKP---SLFE------DFGFFERVK 182

Query:   213 --GRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPA--LLFNLELDTLRADLGILG 268
                R + ++   L  +   +  E+ V+E+  ++  ++T    ++FN ELD +R+     G
Sbjct:   183 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDRIRS-----G 237

Query:   269 FPSKDLHYRFLSQFTPVFYIRIREYSKTVP-VAPFTINYSGALFRQYPGPWQVMLKQADS 327
             +  K   Y  L+  T     ++    +TV  +  F     G LFR YPGPWQV L++  +
Sbjct:   238 YYPK-FFYPKLAALTKTLLPKM----ETVYYIHNFKGQKGGVLFRCYPGPWQV-LRRTRN 291

Query:   328 SYACVAESETRFTLSETKEELL 349
              Y CV + E+  +L E   ++L
Sbjct:   292 KYICVHQQESMPSLKEVALDIL 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      389       361   0.00082  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  230 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.62u 0.12s 27.74t   Elapsed:  00:00:01
  Total cpu time:  27.62u 0.12s 27.74t   Elapsed:  00:00:01
  Start:  Sat May 11 09:57:27 2013   End:  Sat May 11 09:57:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam09353	205	pfam09353, DUF1995, Domain of unknown function (DU	2e-39

>gnl|CDD|220198 pfam09353, DUF1995, Domain of unknown function (DUF1995)

 Score =  138 bits (351), Expect = 2e-39
 Identities = 69/266 (25%), Positives = 95/266 (35%), Gaps = 65/266 (24%)

Query: 83  PKSYEVLAADAANSLAFALQDGKTRL--EIDFPPLPSNISSYKGSSDEFIDANIQLALAV 140
           P   E     A  +L  AL+DGKTRL  E+ FP L                    LAL +
Sbjct: 2   PADLEEAEEQAKEALLAALKDGKTRLQVELRFPGLKLM----------------PLALRL 45

Query: 141 VRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIR 200
            R L E    R  +VFPD      A R +      I                    S  +
Sbjct: 46  ARALAEEG-RRLLVVFPDAGAAALARRDWGDLAFKILS-----------------LSDRK 87

Query: 201 NTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTL 260
            + D    D             + + +     +L  +E   E      P ++ N  L+  
Sbjct: 88  LSEDESKID------------DILILVAPQPSDLEEVEALCELAG-GRPVIMLNPRLEDA 134

Query: 261 RADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQV 320
            A  GI G  +++   RFLS +   +Y+R           P      GALFR YPGPWQ+
Sbjct: 135 AAV-GI-GSVARERRRRFLSTWEVAYYLR-----------PLERG--GALFRCYPGPWQL 179

Query: 321 MLKQADSSYACVAESETRFTLSETKE 346
             K+ +  Y  VAE E+R    E   
Sbjct: 180 F-KEDNGGYRLVAEFESRPDPEEIDA 204

This family of proteins are functionally uncharacterized. Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PF09353	209	DUF1995: Domain of unknown function (DUF1995); Int	100.0
PLN02842	505	nucleotide kinase	100.0

>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=2.5e-50  Score=376.39  Aligned_cols=206  Identities=39%  Similarity=0.623  Sum_probs=180.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCce--EEEEcCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcCCceEEEccCh
Q 016478           82 KPKSYEVLAADAANSLAFALQDGKTR--LEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDK  159 (389)
Q Consensus        82 lP~s~~eav~qA~~Av~~AL~dG~~R--leVEFP~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G~rvkv~fPD~  159 (389)
                      ||.|++|+++||++|+++||++|.+|  +||+||+|..              .+++++++|++.|. +.|++++++|||+
T Consensus         1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------------~~~~la~~~~~~l~-~~~~~~~~~~pd~   65 (209)
T PF09353_consen    1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------------SNMPLAREFARKLA-ASGRRVRVVFPDA   65 (209)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------------hHHHHHHHHHHHHH-hcCceEEEEcCCh
Confidence            79999999999999999999999988  5666998831              45899999999998 6789999999999


Q ss_pred             hhHHHHHHHhhhccCCCCceeEEeccCCCCCccccccccccccCCCCcccccccCCCCCCCCcEEEEEecCCcchHHHHH
Q 016478          160 PEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEK  239 (389)
Q Consensus       160 geaalAkr~~~~~~~~~~g~~i~~L~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ddi~Vvv~Ps~~el~~vE~  239 (389)
                      |++++|+++|++..     +++.+|+++...                   ...+     ..++++|||+|++.+++++|+
T Consensus        66 g~~alA~~~~~~~~-----~~~~~l~~~~~~-------------------~~~~-----~~~~~~vvv~p~~~~l~~~e~  116 (209)
T PF09353_consen   66 GEAALARRDWGDGS-----FKIASLDDWSSS-------------------EDES-----KFDDILVVVAPSPQELDDVEK  116 (209)
T ss_pred             HHHHHHhccccCCC-----eEEeeccCcccc-------------------cccc-----ccCCEEEEEECChhhHHHHHH
Confidence            99999999996665     788888777551                   0000     116999999999999999999


Q ss_pred             HHHHhcCCccEEEEcCccchhccccCcCCCchHHHHHHhhcCceeeEEeeeeccCCCCCCCCcccccceEEEeEeCCCcE
Q 016478          240 YVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQ  319 (389)
Q Consensus       240 l~~~~a~~rPvVllNp~Ld~lrsD~gv~gf~~R~~r~~FLssFe~vYyLr~l~y~~~~~~~Pf~~~~~GaLfR~YPgpWQ  319 (389)
                      ||+.. ++||||||||+|++++++.  ||+++|++|++|+++||+||||||++|++           .|+||||||||||
T Consensus       117 ~~~~~-~~rpvvl~Np~l~~~~~~g--~g~~~r~~~~~Fl~~fe~vY~l~~l~~~~-----------~gal~r~yP~~Wq  182 (209)
T PF09353_consen  117 LCEAA-GGRPVVLLNPQLEDVRSVG--FGFPGRKLRERFLSSFETVYYLRPLRISG-----------NGALFRCYPGPWQ  182 (209)
T ss_pred             HHHhc-CCCeEEEEecccccCCccc--cccccHHHHHHHHhhceEEEEEEeeccCC-----------cEEEEEeCCCCcE
Confidence            99964 5699999999999876555  79999999999999999999999998754           5999999999999


Q ss_pred             EEEEccCCceEEeeeccCCCCchHHH
Q 016478          320 VMLKQADSSYACVAESETRFTLSETK  345 (389)
Q Consensus       320 V~~~~~~g~y~lvae~~~RPs~~E~~  345 (389)
                      ||+++++|+|+||+++++|||++|+.
T Consensus       183 v~~~~~~~~y~~v~~~~~rP~~~e~~  208 (209)
T PF09353_consen  183 VFREDDDGEYECVAEFEERPTYEELE  208 (209)
T ss_pred             EEEEcCCCcEEEEEecccCCChHHhh
Confidence            99999889999999999999998874

>PLN02842 nucleotide kinase

Probab=100.00  E-value=1.4e-47  Score=397.10  Aligned_cols=252  Identities=18%  Similarity=0.250  Sum_probs=198.2

Q ss_pred             hhccCCCCCCCCCCCC---CCCCHHH---HHHHHHHHHHHHHHcCCceEEEE--cCCCCCCCCCCCCCchHHHHHhHHHH
Q 016478           66 QTASSSLGPKAGVAIY---KPKSYEV---LAADAANSLAFALQDGKTRLEID--FPPLPSNISSYKGSSDEFIDANIQLA  137 (389)
Q Consensus        66 ~~a~~~~~~~~g~~~~---lP~s~~e---av~qA~~Av~~AL~dG~~RleVE--FP~L~~~ld~~~G~~d~~~~~n~~La  137 (389)
                      ..|+..++.+.|.++.   .|++.+.   ..++|++||++|+++|++|++||  ||+|+.++|+|+-+.-      ++|+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~~~~~~~~~~------~~l~  287 (505)
T PLN02842        214 KKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTL------MELV  287 (505)
T ss_pred             ccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcceEEEEEecCccccccccccchhH------HHHH
Confidence            4677888999998775   5999987   88999999999999999999887  9999999988874331      8999


Q ss_pred             HHHHHHHHHhcCCceEEEccC-hhhHHHHHHHhhhccCCCCce-eEEeccCCCCCc-cccccccccccCCCCcccccccC
Q 016478          138 LAVVRKLQERMETRACIVFPD-KPEKGRASRLFKRALDSIDGI-TIGSLDDVPTGA-VRSFFSSIRNTLDFDFDDQEEGR  214 (389)
Q Consensus       138 ~~~a~~l~~~~G~rvkv~fPD-~geaalAkr~~~~~~~~~~g~-~i~~L~d~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  214 (389)
                      ++|+..|+ +.|++||||||| +|+++++     +.+.+..|+ +|...+||++.. ++.|..         +++-.+..
T Consensus       288 ~~~~~~~~-~~~~~~kv~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~dw~~~~~~~~~~~---------~~~~~~~~  352 (505)
T PLN02842        288 RVLALSFA-DDGKRVKVCVQGSMGEGALA-----GMPLQLAGTRKILEFMDWGDYGAKGTFVK---------IGAIGAKE  352 (505)
T ss_pred             HHHHHHHh-hcCCceEEEecCCcchhHhc-----cCccccccchhhhhhccccccccccccee---------ecccccCC
Confidence            99999998 899999999999 8999881     222223333 122233333310 011110         00001123


Q ss_pred             CCCCCCCcEEEEEecCC-c---chHHHHHHHHHhcCCccEEEEcCccchhccccCcCC-CchHHHHHHhhcCceeeEEee
Q 016478          215 WQSDEPPTLYVFINCST-R---ELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILG-FPSKDLHYRFLSQFTPVFYIR  289 (389)
Q Consensus       215 ~~~~~~ddi~Vvv~Ps~-~---el~~vE~l~~~~a~~rPvVllNp~Ld~lrsD~gv~g-f~~R~~r~~FLssFe~vYyLr  289 (389)
                      ++  ++|++||+|+||+ +   ++++||+||+ .+++|||||+||+|+++.+..|+ | +.+|++|++|+++|++|||||
T Consensus       353 ~~--~~d~~~i~v~P~~~v~~~~~~~~e~~~~-~~~~rpvillnp~LeD~~~~vGi-g~~~~R~~R~~f~~t~~~~Y~~~  428 (505)
T PLN02842        353 VD--EEDDMFILVAPQNAVGNCIIDDLQAMTT-AAGKRPVILVNPRLKDLPGSSGI-MQTMGREQRLEYAASFENCYSFR  428 (505)
T ss_pred             CC--CCCcEEEEEcCCccccccchHHHHHHHH-HhCCCeEEEECCcccccccccch-hHHHHHHHHHHHHHHhhheeEEE
Confidence            33  6789999999998 4   9999999999 57899999999999987777777 6 999999999999999999999


Q ss_pred             eeccCCCCCCCCcccccceEEEeEeCCCcEEEEEcc----CCceEEeeeccCCCCchHHHHHHH
Q 016478          290 IREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQA----DSSYACVAESETRFTLSETKEELL  349 (389)
Q Consensus       290 ~l~y~~~~~~~Pf~~~~~GaLfR~YPgpWQV~~~~~----~g~y~lvae~~~RPs~~E~~d~ll  349 (389)
                      ||++.+      ++++++|||+|+||++||||++++    +++|++++++++||+ +|.++.+|
T Consensus       429 ~l~~~~------~~~~~~gal~~~yp~~w~l~~~~~~~~~~~~y~~~~~~~~~P~-~e~i~~~~  485 (505)
T PLN02842        429 LLYYAG------TQYPIMGALRMSYPYRYELYKRVDEENGKEKYIILATFSERPT-PDEINDAF  485 (505)
T ss_pred             eccccc------cccccceeeeecCCCCeeEEEecCccccCcceEEeeecCCCCC-HHHHHHHh
Confidence            998765      456789999999999999998753    469999999999995 56656665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-15

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 8e-15
 Identities = 56/407 (13%), Positives = 106/407 (26%), Gaps = 127/407 (31%)

Query: 3   MSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQQK 62
           MS + +    P    ++         R ++ +   +K+  S                Q  
Sbjct: 95  MSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVS--------------RLQPY 137

Query: 63  PKAQTASSSLGPKAGVAIYKP----KSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSN 118
            K + A   L P   V I       K+   +A D            K + ++DF     N
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKT--WVALD-------VCLSYKVQCKMDFKIFWLN 188

Query: 119 ISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLF-----KRAL 173
           + +   S +  ++   +L   +      R +  + I       +    RL      +  L
Sbjct: 189 LKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 174 DSIDGITIGSLDDVPTGAVRSFFSSIRNTLD-FDFDDQEEGRWQSDEPPTLYVFINC--- 229
             +       L +V                + F+                     +C   
Sbjct: 248 L-V-------LLNV----------QNAKAWNAFNL--------------------SCKIL 269

Query: 230 -STRELSVIE----KYVEKFAMSTPALLFNL-ELDTLRADLGILGFPSKDLHYRFLSQFT 283
            +TR   V +          ++   ++     E+ +L      L    +DL         
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDL--------- 318

Query: 284 PVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSE 343
           P      RE        P  ++      R     W    K  +              L+ 
Sbjct: 319 P------REVLT---TNPRRLSIIAESIRDGLATWD-NWKHVNCD-----------KLTT 357

Query: 344 TKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLE---LSSAW 387
             E  L V  L+  E       R+ +   + +     +    LS  W
Sbjct: 358 IIESSLNV--LEPAE------YRKMFDRLSVFPPSAHIPTILLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00