Citrus Sinensis ID: 016536

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MASLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
ccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEEEEccEEccccccccccccccccccccEEEEEEEEccEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEccccEEEcccccEEEEEEccEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEEccHHHHHcccEEEEEcccccEEEEEEEccEEcccccccHHHHHHHHHHHHHHHcccccccccccc
ccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccEcccccccccccccccccHHHHHHHHHHHHcccccHHHHHcccEEEEcccEccHHHcEEEEEccEEEcccccEEEEEEEcccEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEEEEcccHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEcccccEEEEEccEEEccccHHHHHccHcHHHHHHHHHHcccccEEEEEEEEcccHHHHEHHcHEEEccccEEEEEEEEEcccEEccccccHHHHHHHHHHHHHHHcccccccccccc
maslaktisqnqpvptklthhvnnlpvfsrnlcysrtgsfgemrfirscgrtealidssaqlsdvpllSCSEAIERIKSTQANQKSKQQFLAMYSSIfggittdpaamvipmddhmvhrghgvfdtaaICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVsasncrkgslrywlsagvgdfqlspvgchqstFYVIVIqddspfvskgvkvitssipikppqfgtvksvnylpnvLSKMEAEETGAFAAIWldgegfiaegpnmnvaFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSgvlvrpvvqwdeqvigngkegPIAQALLDLILEdmqsgpptvrvavpy
maslaktisqnqpvptklthhvnnlpvfsRNLCYSRTGSFGEMRFIRSCGRTEALIdssaqlsdvplLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQtvsasncrkgSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITssipikppqfgtvkSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALvregklhgikvgnvtveegKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILedmqsgpptvrvavpy
MASLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
*****************LTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAI**************QFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILE***************
************PVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIR**************LSDVPLLSCSEAI****************LAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPT***AVPY
***********QPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAIERIKS********QQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
*****KTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
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MASLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALIDSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
Q8L493373 Branched-chain-amino-acid yes no 0.844 0.876 0.689 1e-131
Q58414288 Putative branched-chain-a yes no 0.635 0.854 0.315 1e-27
O29329290 Putative branched-chain-a yes no 0.625 0.834 0.299 7e-26
O07597282 D-alanine aminotransferas yes no 0.651 0.893 0.302 7e-20
P54692283 D-alanine aminotransferas no no 0.671 0.918 0.288 4e-18
O86428307 Branched-chain-amino-acid yes no 0.620 0.781 0.271 1e-17
Q92B90289 D-alanine aminotransferas yes no 0.648 0.868 0.231 2e-14
Q8W0Z7555 Branched-chain-amino-acid no no 0.627 0.437 0.266 2e-14
O27481306 Putative branched-chain-a yes no 0.630 0.797 0.245 6e-14
Q71Z49289 D-alanine aminotransferas yes no 0.648 0.868 0.231 7e-14
>sp|Q8L493|BCAL3_ARATH Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/332 (68%), Positives = 272/332 (81%), Gaps = 5/332 (1%)

Query: 57  DSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHM 116
           DSS+Q  +VP+LS  E  ER+K  +  Q    QFLAMYSS+  GITTDPAAMV+P+DDHM
Sbjct: 46  DSSSQSWNVPVLSSYEVGERLKLARGGQ----QFLAMYSSVVDGITTDPAAMVLPLDDHM 101

Query: 117 VHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCR 176
           VHRGHGVFDTA I +GYLYELDQHLDRI+RSASMAKI LPFDR++++RILIQTVS S CR
Sbjct: 102 VHRGHGVFDTALIINGYLYELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCR 161

Query: 177 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTV 236
            GSLRYWLSAG GDF LSP  C + T Y IVI+ +      GVKV+TSSIPIKPP+F TV
Sbjct: 162 DGSLRYWLSAGPGDFLLSPSQCLKPTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATV 221

Query: 237 KSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTK-ERLLLMPQFDKILS 295
           KSVNYLPNVLS+MEAE  GA+A IW+  +GFIAEGPNMNVAFV    + L+MP+FD +LS
Sbjct: 222 KSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLS 281

Query: 296 GCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIG 355
           GCTAKR LTLA+ LV +G L  +KV +VTVE+GKKA+EM+L+GSG+ +RPV+QWDE+ IG
Sbjct: 282 GCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIG 341

Query: 356 NGKEGPIAQALLDLILEDMQSGPPTVRVAVPY 387
            GKEGPIA+ALLDL+LEDM+SGPP+VRV VPY
Sbjct: 342 EGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373

Arabidopsis thaliana (taxid: 3702)
>sp|Q58414|ILVE_METJA Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O29329|ILVE_ARCFU Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O07597|DAAA_BACSU D-alanine aminotransferase OS=Bacillus subtilis (strain 168) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|P54692|DAAA_BACLI D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O86428|ILVE_PSEAE Branched-chain-amino-acid aminotransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ilvE PE=1 SV=2 Back     alignment and function description
>sp|Q92B90|DAAA_LISIN D-alanine aminotransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q8W0Z7|BCAL1_ARATH Branched-chain-amino-acid aminotransferase-like protein 1 OS=Arabidopsis thaliana GN=At3g05190 PE=2 SV=1 Back     alignment and function description
>sp|O27481|ILVE_METTH Putative branched-chain-amino-acid aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ilvE PE=3 SV=2 Back     alignment and function description
>sp|Q71Z49|DAAA_LISMF D-alanine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dat PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
225430001388 PREDICTED: branched-chain-amino-acid ami 0.997 0.994 0.719 1e-162
356565786382 PREDICTED: branched-chain-amino-acid ami 0.863 0.874 0.770 1e-150
350538939395 4-amino-4-deoxychorismate lyase [Solanum 0.837 0.820 0.759 1e-148
255551024318 D-alanine aminotransferase, putative [Ri 0.811 0.987 0.777 1e-147
356515583345 PREDICTED: branched-chain-amino-acid ami 0.891 1.0 0.721 1e-146
449436870393 PREDICTED: branched-chain-amino-acid ami 0.919 0.905 0.665 1e-144
449508021338 PREDICTED: branched-chain-amino-acid ami 0.863 0.988 0.705 1e-143
224142999294 predicted protein [Populus trichocarpa] 0.759 1.0 0.795 1e-139
47848039388 putative branched-chain amino acid amino 0.870 0.868 0.670 1e-131
115445503389 Os02g0273100 [Oryza sativa Japonica Grou 0.870 0.866 0.670 1e-131
>gi|225430001|ref|XP_002284106.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic [Vitis vinifera] gi|296081877|emb|CBI20882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/389 (71%), Positives = 323/389 (83%), Gaps = 3/389 (0%)

Query: 1   MASLAKTISQNQPVPTKLTHHVNNLPVFSRNLCYSRTG--SFGEMRFIRSCGRTEALIDS 58
           MA L+     +   P K +HH  + PVF+        G  S      +R+  + E L+DS
Sbjct: 1   MAFLSTPPFASTAYPAKFSHHSLDSPVFTPRFSVLGLGFRSISHGVVVRNSNQAEPLVDS 60

Query: 59  SAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVH 118
           + Q++DVPLLSC EAIER+K++Q NQKSKQQ+LAMYSSIFGGITTD AAMVIPMDDHMVH
Sbjct: 61  T-QIADVPLLSCLEAIERLKTSQENQKSKQQYLAMYSSIFGGITTDKAAMVIPMDDHMVH 119

Query: 119 RGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKG 178
           RGHGVFDTAAI DGYLYELDQHLDR +RSASMAKI  PFDR+S+R ILIQTVSAS CRKG
Sbjct: 120 RGHGVFDTAAIMDGYLYELDQHLDRFLRSASMAKINPPFDRESIRGILIQTVSASKCRKG 179

Query: 179 SLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKS 238
           SLRYWLSAG GDFQLSP GC QS  Y IVIQD SPF  KG+KV+TSS+PIK PQF T+KS
Sbjct: 180 SLRYWLSAGPGDFQLSPSGCQQSALYAIVIQDLSPFDQKGIKVVTSSVPIKTPQFATMKS 239

Query: 239 VNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCT 298
           VNYLPNVLSKMEAEE G++AAIWLD +GFIAEGPNMNVAFVTKE+ L+MP FDKILSGCT
Sbjct: 240 VNYLPNVLSKMEAEENGSYAAIWLDDDGFIAEGPNMNVAFVTKEKELVMPHFDKILSGCT 299

Query: 299 AKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGK 358
           AKRVL LA+ L+REGKL GI+VGN++VEEGKKA+EM+L+GSGVLVRPV+QWDE VIG+GK
Sbjct: 300 AKRVLALAEGLMREGKLQGIRVGNLSVEEGKKADEMMLIGSGVLVRPVLQWDEHVIGDGK 359

Query: 359 EGPIAQALLDLILEDMQSGPPTVRVAVPY 387
           EGP+  +LL+LIL+DM+SGPPTVRV VPY
Sbjct: 360 EGPVTLSLLNLILDDMKSGPPTVRVPVPY 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356565786|ref|XP_003551118.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|350538939|ref|NP_001234878.1| 4-amino-4-deoxychorismate lyase [Solanum lycopersicum] gi|50345543|gb|AAT74744.1| 4-amino-4-deoxychorismate lyase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|255551024|ref|XP_002516560.1| D-alanine aminotransferase, putative [Ricinus communis] gi|223544380|gb|EEF45901.1| D-alanine aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356515583|ref|XP_003526478.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449436870|ref|XP_004136215.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508021|ref|XP_004163194.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142999|ref|XP_002324812.1| predicted protein [Populus trichocarpa] gi|222866246|gb|EEF03377.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|47848039|dbj|BAD21824.1| putative branched-chain amino acid aminotransferase [Oryza sativa Japonica Group] gi|50252287|dbj|BAD28292.1| putative branched-chain amino acid aminotransferase [Oryza sativa Japonica Group] gi|218190468|gb|EEC72895.1| hypothetical protein OsI_06716 [Oryza sativa Indica Group] gi|222622582|gb|EEE56714.1| hypothetical protein OsJ_06215 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115445503|ref|NP_001046531.1| Os02g0273100 [Oryza sativa Japonica Group] gi|113536062|dbj|BAF08445.1| Os02g0273100 [Oryza sativa Japonica Group] gi|215708697|dbj|BAG93966.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2174433373 ADCL "4-amino-4-deoxychorismat 0.919 0.954 0.649 9.8e-119
TIGR_CMR|CHY_0515293 CHY_0515 "branched-chain amino 0.669 0.883 0.303 1.9e-28
TIGR_CMR|BA_1416298 BA_1416 "branched-chain amino 0.658 0.855 0.289 4.6e-25
TIGR_CMR|BA_1849299 BA_1849 "branched-chain amino 0.656 0.849 0.285 1.3e-22
UNIPROTKB|O07597282 dat "D-alanine aminotransferas 0.661 0.907 0.303 1.1e-21
UNIPROTKB|P54692283 dat "D-alanine aminotransferas 0.669 0.915 0.298 2.6e-21
TIGR_CMR|BA_2256291 BA_2256 "D-amino acid aminotra 0.677 0.900 0.276 1e-20
TIGR_CMR|CHY_2669285 CHY_2669 "aminodeoxychorismate 0.633 0.859 0.295 2.9e-20
TIGR_CMR|CJE_0318304 CJE_0318 "branched-chain amino 0.630 0.802 0.304 4.1e-19
TIGR_CMR|SPO_3604286 SPO_3604 "D-amino acid aminotr 0.622 0.842 0.274 2.6e-18
TAIR|locus:2174433 ADCL "4-amino-4-deoxychorismate lyase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 239/368 (64%), Positives = 285/368 (77%)

Query:    24 NLPVFSRNLCYSRTGSFGEMRFIRSCGRTEALI---DSSAQLSDVPLLSCSEAIERIKST 80
             NL   S+  C  R G     RF R   R   ++   DSS+Q  +VP+LS  E  ER+K  
Sbjct:    14 NLRSLSQVPCPLRHG----FRFPRRLTRRRTILMCSDSSSQSWNVPVLSSYEVGERLKLA 69

Query:    81 QANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQH 140
             +  Q    QFLAMYSS+  GITTDPAAMV+P+DDHMVHRGHGVFDTA I +GYLYELDQH
Sbjct:    70 RGGQ----QFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYLYELDQH 125

Query:   141 LDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ 200
             LDRI+RSASMAKI LPFDR++++RILIQTVS S CR GSLRYWLSAG GDF LSP  C +
Sbjct:   126 LDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLSPSQCLK 185

Query:   201 STFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAI 260
              T Y IVI+ +      GVKV+TSSIPIKPP+F TVKSVNYLPNVLS+MEAE  GA+A I
Sbjct:   186 PTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAKGAYAGI 245

Query:   261 WLDGEGFIAEGPNMNVAFVTKE-RLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIK 319
             W+  +GFIAEGPNMNVAFV    + L+MP+FD +LSGCTAKR LTLA+ LV +G L  +K
Sbjct:   246 WVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKGILKTVK 305

Query:   320 VGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP 379
             V +VTVE+GKKA+EM+L+GSG+ +RPV+QWDE+ IG GKEGPIA+ALLDL+LEDM+SGPP
Sbjct:   306 VMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPP 365

Query:   380 TVRVAVPY 387
             +VRV VPY
Sbjct:   366 SVRVLVPY 373
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0008153 "para-aminobenzoic acid biosynthetic process" evidence=IDA
GO:0008696 "4-amino-4-deoxychorismate lyase activity" evidence=IGI
GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|CHY_0515 CHY_0515 "branched-chain amino acid aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1416 BA_1416 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1849 BA_1849 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|O07597 dat "D-alanine aminotransferase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
UNIPROTKB|P54692 dat "D-alanine aminotransferase" [Bacillus licheniformis (taxid:1402)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2256 BA_2256 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2669 CHY_2669 "aminodeoxychorismate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0318 CJE_0318 "branched-chain amino acid aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3604 SPO_3604 "D-amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L493BCAL3_ARATHNo assigned EC number0.68970.84490.8766yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032460001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (388 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021859001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1031 aa)
     •• 0.900
GSVIVG00035298001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1025 aa)
     •  0.899
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
     •  0.900
GSVIVG00024844001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (358 aa)
     •  0.899
GSVIVG00022469001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (262 aa)
     •  0.899
GSVIVG00020487001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (72 aa)
     •  0.899
GSVIVG00019784001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (925 aa)
     •  0.899
GSVIVG00014349001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (385 aa)
     •  0.899
GSVIVG00007414001
SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (888 aa)
     •  0.899
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02845336 PLN02845, PLN02845, Branched-chain-amino-acid amin 0.0
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 5e-65
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 3e-62
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 3e-52
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 8e-41
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 6e-38
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 6e-37
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 6e-36
TIGR01122298 TIGR01122, ilvE_I, branched-chain amino acid amino 3e-32
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 4e-32
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 3e-27
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 5e-26
TIGR01121276 TIGR01121, D_amino_aminoT, D-amino acid aminotrans 6e-25
PRK07650283 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas 7e-18
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 2e-17
PRK12400290 PRK12400, PRK12400, D-amino acid aminotransferase; 6e-17
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 2e-15
TIGR01123313 TIGR01123, ilvE_II, branched-chain amino acid amin 1e-10
PRK07544292 PRK07544, PRK07544, branched-chain amino acid amin 4e-10
PRK13357356 PRK13357, PRK13357, branched-chain amino acid amin 6e-10
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 9e-10
PRK13356286 PRK13356, PRK13356, aminotransferase; Provisional 6e-04
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
 Score =  568 bits (1466), Expect = 0.0
 Identities = 213/330 (64%), Positives = 252/330 (76%), Gaps = 1/330 (0%)

Query: 59  SAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVH 118
               + VP L  +  + +   ++ +   KQ F AMYSS+ GGITTDPAAMVIP+DDHMVH
Sbjct: 6   PGSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVH 65

Query: 119 RGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKG 178
           RGHGVFDTA I DG+LYELD HLDR +RSA+ AKI LPFDR +LRRIL+QTV+AS CR G
Sbjct: 66  RGHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNG 125

Query: 179 SLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV-SKGVKVITSSIPIKPPQFGTVK 237
           SLRYWLSAG G F LSP GC +  FY +VI+D       +GVKV+TSS+PIKPPQF TVK
Sbjct: 126 SLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVK 185

Query: 238 SVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGC 297
           SVNYLPN LS+MEAEE GAFA IWLD EGF+AEGPNMNVAF+T +  L++P FDKILSGC
Sbjct: 186 SVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGC 245

Query: 298 TAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNG 357
           TA+RVL LA  LV  G L G+K   ++VEE K A+EM+L+GSGV V P+V WD Q IG+G
Sbjct: 246 TARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDG 305

Query: 358 KEGPIAQALLDLILEDMQSGPPTVRVAVPY 387
           K GPI  AL DL+L+DM+SGPP VR  VPY
Sbjct: 306 KVGPITLALHDLLLDDMRSGPPGVRTPVPY 335

Length = 336
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK13356286 aminotransferase; Provisional 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
PRK09266266 hypothetical protein; Provisional 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PRK07101187 hypothetical protein; Provisional 100.0
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
Probab=100.00  E-value=7.8e-69  Score=531.14  Aligned_cols=328  Identities=66%  Similarity=1.080  Sum_probs=297.9

Q ss_pred             cCCCCCCCCCccCHHHHHHHHhhCCCCccccchhhhhceeeeCCeecCCCCcccCCCccccccccceeEEEEEeCCeecC
Q 016536           57 DSSAQLSDVPLLSCSEAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYE  136 (387)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~y~~~~ng~~~~~~~~~ip~~D~g~~yG~gvFEtlrv~~G~lf~  136 (387)
                      ..++++.-.|++++++++++++. +|.+|+.+++.|||++|+||++++++++.||++||||+||||+|||+++++|++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~~~~   83 (336)
T PLN02845          5 VPGSRTKVPPLLSAAEMIQRLQS-KWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGHLYE   83 (336)
T ss_pred             CCCCCCcCCccccHHHHHHHHHh-hhccccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCEEcC
Confidence            45667777889999999999999 78888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEccCCceeecCCCCCCceEEEEEEecCCCC-C
Q 016536          137 LDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF-V  215 (387)
Q Consensus       137 ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~lv~a~~~~~g~iR~~v~~G~g~~~~~p~~~~~~~~~~~v~~~p~~~-~  215 (387)
                      |++|++||.+||++|+|+.|++.++++++|.+++++++..+++||+++++|.|++++.+..++.+.+++.+.+.++.. .
T Consensus        84 le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (336)
T PLN02845         84 LDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDR  163 (336)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccc
Confidence            999999999999999998889999999999999999888889999999999887777666666777777765544333 2


Q ss_pred             CCCeEEEEeeeecCCCCCCCccccCChhhHHHHHHHHHcCCcEEEEEcCCCcEEeeCcceEEEEEeCCEEEecCCCCccc
Q 016536          216 SKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILS  295 (387)
Q Consensus       216 ~~Gv~l~~s~~~~~~p~~~~iKt~NYl~~~la~~eA~~~G~de~L~ld~~G~V~Egs~sNv~fv~k~~~l~TP~~~~iLp  295 (387)
                      ..|+++.++++++.++.++++|++||+.+++++++|+++|+||+||+|++|+|+|++++||||+.++++|+||++++||+
T Consensus       164 ~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL~  243 (336)
T PLN02845        164 PEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILS  243 (336)
T ss_pred             cCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCCcCc
Confidence            57999988887776666789999999999999999999999999999999999999999997766799999999988999


Q ss_pred             cHHHHHHHHHHHHhhhCC--ccceEEEEEecHHhHhcccEEEEEccccceEEEEEECCEEeCCCCchHHHHHHHHHHHHH
Q 016536          296 GCTAKRVLTLAKALVREG--KLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILED  373 (387)
Q Consensus       296 GiTR~~vLela~~~~~~G--~~~~V~Er~I~~~eL~~adEvfltnT~~gv~PV~~id~~~i~~g~~gpv~~~L~~~l~~~  373 (387)
                      ||||+.|+++|+++.+.|  +  +|+|+.|+++||.+|||+|+|||++||+||.+||++.+++|++||++++|++.|++.
T Consensus       244 GItR~~vlela~~~~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~~~~  321 (336)
T PLN02845        244 GCTARRVLELAPRLVSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLLDD  321 (336)
T ss_pred             cHHHHHHHHHHHhhhccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999763336  6  899999999999999999999999999999999999999889999999999999977


Q ss_pred             hhcCCCCcccccCC
Q 016536          374 MQSGPPTVRVAVPY  387 (387)
Q Consensus       374 i~~g~~~~~~~v~~  387 (387)
                      ...++.++++|++|
T Consensus       322 ~~~~~~~~~~~~~~  335 (336)
T PLN02845        322 MRSGPPGVRTPVPY  335 (336)
T ss_pred             HhcCCCccceeccC
Confidence            77777788999998

>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1wrv_A308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 7e-18
3u0g_A328 Crystal Structure Of Branched-Chain Amino Acid Amin 1e-16
3daa_A277 Crystallographic Structure Of D-Amino Acid Aminotra 1e-13
3lqs_A280 Complex Structure Of D-Amino Acid Aminotransferase 1e-13
1daa_A282 Crystallographic Structure Of D-Amino Acid Aminotra 1e-13
5daa_A277 E177k Mutant Of D-Amino Acid Aminotransferase Compl 4e-13
1g2w_A282 E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D 6e-13
1a0g_A282 L201a Mutant Of D-Amino Acid Aminotransferase Compl 7e-13
2zgi_A246 Crystal Structure Of Putative 4-Amino-4-Deoxychoris 8e-08
1a3g_A308 Branched-chain Amino Acid Aminotransferase From Esc 3e-07
1i1k_A309 Crystal Structure Of Eschelichia Coli Branched-chai 3e-07
1et0_A269 Crystal Structure Of Aminodeoxychorismate Lyase Fro 4e-07
2y4r_A292 Crystal Structure Of 4-Amino-4-Deoxychorismate Lyas 4e-04
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure 
Iteration: 1

 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 17/276 (6%)
Query: 115 HMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTV 170
           H +H G  VF+     +      ++ L +H+ R   SA + ++++PF  + L   + + V
Sbjct: 27  HALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVV 86
Query: 171 SASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVITSSI 226
             +  R   +R     G     ++P+  + +   V   +  +      V KG ++ITSS 
Sbjct: 87  RRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSW 146
Query: 227 PIKPPQF--GTVK-SVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 283
              P     G  K   NY+ + L+KMEA   GA  A+ LD EG++AEG   N+ FV ++ 
Sbjct: 147 ARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFV-RDG 205
Query: 284 LLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLV 343
           ++   +    L G T   V+ +AK L  E     ++V   T ++   A+E+ + G+   V
Sbjct: 206 VIYALEHSVNLEGITRDSVIRIAKDLGYE-----VQVVRATRDQLYMADEVFMTGTAAEV 260
Query: 344 RPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP 379
            PV   D + IG G  GP+A  L ++ LE +    P
Sbjct: 261 TPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRP 296
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277 Back     alignment and structure
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280 Back     alignment and structure
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277 Back     alignment and structure
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282 Back     alignment and structure
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase Length = 246 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From Escherichia Coli Length = 269 Back     alignment and structure
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From Pseudomonas Aeruginosa Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 7e-53
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 1e-51
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 5e-50
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 6e-50
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 5e-49
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 6e-43
1iye_A309 Branched-chain amino acid aminotransferase; hexame 1e-41
3u0g_A328 Putative branched-chain amino acid aminotransfera; 2e-41
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 2e-40
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 4e-39
3qqm_A221 MLR3007 protein; structural genomics, joint center 9e-30
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 4e-16
3dth_A372 Branched-chain amino acid aminotransferase; open t 5e-13
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 9e-12
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 3e-11
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
 Score =  175 bits (447), Expect = 7e-53
 Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 22/271 (8%)

Query: 109 VIPMDDHMVHRGH---GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 165
              +D     R     G+F+T  +          H +R+  SA    I            
Sbjct: 16  SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71

Query: 166 LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSS 225
           LIQ +   N   G ++  LS G     L+  G        I    +       V++I+ +
Sbjct: 72  LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQL---IFQTFNYSIQKHPVRLISIN 128

Query: 226 -IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 284
            +  K      +KSVNYL  ++++ +A   GA  A++ + E  + E    N+  +    L
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANLFLIENNIL 188

Query: 285 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 342
                 D IL G T  R+++  +          + V   ++T +  + A+ + L  S   
Sbjct: 189 YTPRVEDGILPGITRARLISHCQQH-------KMSVQEISLTKKRIEDADAVFLTNSLQG 241

Query: 343 VRPVVQWDEQVIGNGKEGPIAQALLDLILED 373
           +R V+  D  +       PI   L+ L+ +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
Probab=100.00  E-value=3.8e-61  Score=473.57  Aligned_cols=283  Identities=26%  Similarity=0.387  Sum_probs=255.4

Q ss_pred             eeeeCCeecCCCCcccCCCccccccccceeEEEEEeC---C--eecCHHHHHHHHHHHHHHccCcCCCCHHHHHHHHHHH
Q 016536           95 SSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICD---G--YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT  169 (387)
Q Consensus        95 ~~~~ng~~~~~~~~~ip~~D~g~~yG~gvFEtlrv~~---G--~lf~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~l  169 (387)
                      ..|+||.+++.+.+.|++.||+||||||||||||+++   |  ++|+|++|++||.+||++|+|+.|++.++|.++|.++
T Consensus        30 ~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l  109 (328)
T 3u0g_A           30 KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDV  109 (328)
T ss_dssp             EEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred             EEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            3699999999999999999999999999999999998   9  9999999999999999999998889999999999999


Q ss_pred             HHhcCCCCceEEEEEEccCCceeecCCCCCCceEEEEEEecCCC-C---CCCCeEEEEeeeecCCC--CCCCcc-ccCCh
Q 016536          170 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP-F---VSKGVKVITSSIPIKPP--QFGTVK-SVNYL  242 (387)
Q Consensus       170 v~a~~~~~g~iR~~v~~G~g~~~~~p~~~~~~~~~~~v~~~p~~-~---~~~Gv~l~~s~~~~~~p--~~~~iK-t~NYl  242 (387)
                      +++|+..+++||+++++|.+.+++.|..+ .+.+++.+.+.+.. .   ..+|+++.++++.|..+  .++++| ++||+
T Consensus       110 v~~n~~~~~~iR~~vtrg~~~~g~~p~~~-~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~R~~~~~~~~~~K~t~nyl  188 (328)
T 3u0g_A          110 VRENKLESCYLRPIIWIGSEKLGVSAKGN-TIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYV  188 (328)
T ss_dssp             HHHTTCSSEEEEEEEEECSSCCSTTCCCC-CEEEEEEEEECC----HHHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHH
T ss_pred             HHhcCCCCeEEEEEEEecCCCCCcCCCCC-CcEEEEEEEEcCCCCChhhhcCCEEEEEeeeeecCCCCcccchhhhhhhH
Confidence            99998889999999999988888776554 36666666654421 1   24799999998777543  368999 89999


Q ss_pred             hhHHHHHHHHHcCCcEEEEEcCCCcEEeeCcceEEEEEeCCEEEecCCCCccccHHHHHHHHHHHHhhhCCccceEEEEE
Q 016536          243 PNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGN  322 (387)
Q Consensus       243 ~~~la~~eA~~~G~de~L~ld~~G~V~Egs~sNv~fv~k~~~l~TP~~~~iLpGiTR~~vLela~~~~~~G~~~~V~Er~  322 (387)
                      ++++++++|+++|+||+||+|++|+|+|++++|| |+++||+|+||++++||+||||+.++++|+++   |+  +|+|+.
T Consensus       189 ~~vla~~eA~~~G~~e~l~ld~~g~v~E~~~sNi-f~v~~g~l~TP~~~~iL~GitR~~vl~~a~~~---g~--~v~e~~  262 (328)
T 3u0g_A          189 NSILANQEATADGYDEALLLDVDGYVSEGSGENF-FLVNRGKLYTPDLASCLDGITRDTVITLAKEA---GI--EVIEKR  262 (328)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECTTSCEEEESSSEE-EEEETTEEEECCSSSSCCCHHHHHHHHHHHHT---TC--CEEECC
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCcEEEcCceeE-EEEECCEEEeCCccccchHHHHHHHHHHHHHc---CC--eEEEEe
Confidence            9999999999999999999999999999999999 55689999999996699999999999999998   98  999999


Q ss_pred             ecHHhHhcccEEEEEccccceEEEEEECCEEeCCCCchHHHHHHHHHHHHHhhcCCC----Cccccc
Q 016536          323 VTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP----TVRVAV  385 (387)
Q Consensus       323 I~~~eL~~adEvfltnT~~gv~PV~~id~~~i~~g~~gpv~~~L~~~l~~~i~~g~~----~~~~~v  385 (387)
                      |+++||.+|||+|+|||+++|+||.+||++.+++|++||++++|++.|. +++.|..    .|..||
T Consensus       263 i~~~eL~~adevf~tns~~~v~PV~~Id~~~~~~g~~g~vt~~L~~~~~-~~~~g~~~~~~~W~~~v  328 (328)
T 3u0g_A          263 ITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAFF-DVVNGKSAKHADWLTKI  328 (328)
T ss_dssp             CCHHHHHTCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-HHHTTCCSTTGGGEEEC
T ss_pred             CCHHHHhhCCEEEEEcchhhEEEEEEECCEECCCCCCCHHHHHHHHHHH-HHHcCCCCCCCCCceeC
Confidence            9999999999999999999999999999999999999999999999998 8888865    477766
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 6e-38
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 2e-36
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 1e-21
d2a1ha1363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 2e-11
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (343), Expect = 6e-38
 Identities = 57/279 (20%), Positives = 105/279 (37%), Gaps = 17/279 (6%)

Query: 110 IPMDDHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 165
           + +  H +H G  VF+     D      ++   +H+ R+  SA + +  +      L   
Sbjct: 19  VHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEA 78

Query: 166 LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKV 221
               +  +N     +R  +  G     ++P   + +   +      +      + +G+  
Sbjct: 79  CRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDA 138

Query: 222 ITSSIPIKPP---QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 278
           + SS     P           NYL ++L   EA   G    I LD  G+I+EG   N+  
Sbjct: 139 MVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFE 198

Query: 279 VTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 338
           V    L   P     L G T   ++ LAK L  E +        ++ E    A+E+ + G
Sbjct: 199 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ-----VLSRESLYLADEVFMSG 253

Query: 339 SGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSG 377
           +   + PV   D   +G G+ GP+ + +       + +G
Sbjct: 254 TAAEITPVRSVDGIQVGEGRCGPVTKRIQQA-FFGLFTG 291
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-59  Score=450.15  Aligned_cols=283  Identities=22%  Similarity=0.340  Sum_probs=254.3

Q ss_pred             eeeCCeecCCCCcccCCCccccccccceeEEEEEeCCe----ecCHHHHHHHHHHHHHHccCcCCCCHHHHHHHHHHHHH
Q 016536           96 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVS  171 (387)
Q Consensus        96 ~~~ng~~~~~~~~~ip~~D~g~~yG~gvFEtlrv~~G~----lf~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~lv~  171 (387)
                      .|+||.+++.+.+.||++||||+||||||||||+++|+    +|+|++|++||.+||+.++|+.|.+.+.+.+++.++++
T Consensus         5 i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~v~   84 (304)
T d1iyea_           5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR   84 (304)
T ss_dssp             EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred             EEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHHHH
Confidence            68999999999999999999999999999999999886    89999999999999999999999999999999999999


Q ss_pred             hcCCCCceEEEEEEccCCceeecCCCCCCceEEEEEEecCCCC----CCCCeEEEEeeeecCCC---CCCCccccCChhh
Q 016536          172 ASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVITSSIPIKPP---QFGTVKSVNYLPN  244 (387)
Q Consensus       172 a~~~~~g~iR~~v~~G~g~~~~~p~~~~~~~~~~~v~~~p~~~----~~~Gv~l~~s~~~~~~p---~~~~iKt~NYl~~  244 (387)
                      +++..++++|+.++++.+..++.+.....+.+++.+.+.+...    ...|+++.+++..|..|   ....+|++||+.+
T Consensus        85 ~n~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~  164 (304)
T d1iyea_          85 KNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSS  164 (304)
T ss_dssp             HTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHH
T ss_pred             hcccccceEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEeeccccCCCCcccccccccCcccc
Confidence            9999999999999998877777666555666666665543322    24688988887766544   3567889999999


Q ss_pred             HHHHHHHHHcCCcEEEEEcCCCcEEeeCcceEEEEEeCCEEEecCCC-CccccHHHHHHHHHHHHhhhCCccceEEEEEe
Q 016536          245 VLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNV  323 (387)
Q Consensus       245 ~la~~eA~~~G~de~L~ld~~G~V~Egs~sNv~fv~k~~~l~TP~~~-~iLpGiTR~~vLela~~~~~~G~~~~V~Er~I  323 (387)
                      +++.++|+++|+||+||+|++|+|+|++++|| |++++|+++||+++ +||+||||+.|+++|+++   |+  +|+|+.+
T Consensus       165 ~~a~~~A~~~g~deal~ld~~g~v~E~s~sNi-f~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~---gi--~v~e~~i  238 (304)
T d1iyea_         165 LLVGSEARRHGYQEGIALDVNGYISEGAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL---GI--EVREQVL  238 (304)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEETTBEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCC
T ss_pred             chhhhHHHHcCCcceeeecccCeEeecCceeE-EEEeCCEEEEeecccccCCchHHHHHHHHhhhc---cc--ceeeccC
Confidence            99999999999999999999999999999999 56699999999984 899999999999999998   98  9999999


Q ss_pred             cHHhHhcccEEEEEccccceEEEEEECCEEeCCCCchHHHHHHHHHHHHHhhcCCCC----ccccc
Q 016536          324 TVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPT----VRVAV  385 (387)
Q Consensus       324 ~~~eL~~adEvfltnT~~gv~PV~~id~~~i~~g~~gpv~~~L~~~l~~~i~~g~~~----~~~~v  385 (387)
                      +++||.+|||+|+|||+.||+||.+||++.+++|++||++++|+++|. +++.|...    |..+|
T Consensus       239 ~~~~L~~AdEvfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~-~i~~g~~~~~~~W~~~v  303 (304)
T d1iyea_         239 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFF-GLFTGETEDKWGWLDQV  303 (304)
T ss_dssp             BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-GGGTTSSCCCSCCEEEC
T ss_pred             CHHHHHhhCHHhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHH-HHHcCCCCCCCCCCeEC
Confidence            999999999999999999999999999999999999999999999998 89988773    77766
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure