Citrus Sinensis ID: 016572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEEEHHHccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlqmqclnlapkfnplqspgcsrkfaspivtqrhkssikcssqssfsfpnqnkishnnnkppckplvplalqdghalqqseddnkpaaapSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVcflpvqslsqvtPAFLLGVLKAVVAQIFMNISLCSLNQICDVeidkinkpylplasgelsmgTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGltgaaysvplpflrwkshtfmapFTLVILMGLILQIpyfihsqtyllgkpfevtgpfvFATAIMSIYAFVNGLlkdlpdvegdkafGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKvdldnfdsqFGFYMFLWQASDY
Flexible Loop (DISEMBL)
MLQMQCLNLapkfnplqspgcSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Low Complexity Region (SEG)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKssikcssqssfsFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICagsallslalaflsgsPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYggavvagaTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Disordered region (IsUnstruct)
*******************************************************************************************FLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ****
Disordered Region (DISOPRED)
***********************************************************************************************VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Disordered Region (DISEMBL)
MLQMQCLNLAPKFNPLQSPGCSRKFASP********************PNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Disordered Region (DISPRO)
*****CLNLAPKFNPLQSPGCSRKFASPIV****K********SSFSFPN***************************************PSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.974	0.933	0.368	8e-69
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.741	0.730	0.418	3e-67
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.917	0.865	0.338	6e-57
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.751	0.711	0.374	6e-55
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.653	0.655	0.296	6e-23
Q0D576	379	Probable homogentisate ph	no	no	0.609	0.622	0.282	3e-19
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.452	0.579	0.277	2e-06
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.364	0.501	0.280	6e-06
P26170	304	Bacteriochlorophyll synth	yes	no	0.418	0.532	0.252	1e-05
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.346	0.476	0.270	2e-05

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  261 bits (666), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 17/394 (4%)

Query: 4   MQCLNLAPKFNPLQSPGCSR-------KFASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +         F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTI 349
           L KD+PD+EGD+ FG+++  V LG++KV  +CV ++ + Y  A++ GATS  + SK  T+
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATV 357

Query: 350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           +GH ILA ++W RSR +DL +  +   FYMF+W+
Sbjct: 358 VGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/287 (41%), Positives = 188/287 (65%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           +  L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI + 
Sbjct: 94  RDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIV 153

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LNQ+ DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+   
Sbjct: 154 GLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVS 213

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            + G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +F
Sbjct: 214 FMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIF 273

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
           ATA MS ++ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ + Y  A++ G
Sbjct: 274 ATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVG 333

Query: 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           ATS  + SK+++++GH+ILA  +W R++ VDL +       YMF+W+
Sbjct: 334 ATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  221 bits (564), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 202/372 (54%), Gaps = 17/372 (4%)

Query: 12  KFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLAL 71
           K   +Q   C+  F+   + Q +K              N+   + N +K   K  V  A+
Sbjct: 43  KKRKIQKEHCAAIFSKHNLKQHYKV-------------NEGGSTSNTSKECEKKYVVNAI 89

Query: 72  QDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLS 131
            +    Q  E + +     S  + V   L+      R YA   I++  T    + V+ LS
Sbjct: 90  SE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLS 145

Query: 132 QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICA 191
            ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKINKP LPLASG+LS    + I A
Sbjct: 146 DLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITA 205

Query: 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251
            S +L L  A++  S  +   V    +  +AY+V LP LRWK +  +     +  + +  
Sbjct: 206 SSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTR 265

Query: 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVL 311
            + +F+H QT +  +P     P +F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + 
Sbjct: 266 SLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLR 325

Query: 312 LGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF 371
           LG ++V  +CV+++ + YG  ++ GATS ++ SK++T++GH +LA ++W  ++ VDL + 
Sbjct: 326 LGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSN 385

Query: 372 DSQFGFYMFLWQ 383
                FYMF+W+
Sbjct: 386 VVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 174/291 (59%)

Query: 93  LEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMN 152
           L+ VK  L+A    +  Y  I I +   S   L V+ LS ++ +FL+GVL+ V+ Q+F+ 
Sbjct: 106 LDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIE 165

Query: 153 ISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCA 212
           I LC +NQ+ D+EIDKINKP+LP+ASG+ S  TG+ I A    LS    +++GS  ++C 
Sbjct: 166 IYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICN 225

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           ++    +  AYS+ +P LRWK + F+A   ++    L L I YF H QT +L +P     
Sbjct: 226 LVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPR 285

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA 332
              F  A M+ Y+    L KD+PDVEGDK  G+ +  V LG+++   +CV+   + +G  
Sbjct: 286 SLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVG 345

Query: 333 VVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           ++AGA+ +   +K+ T +G+ +LA ++W +++ VDL +  S   FYMF+W+
Sbjct: 346 ILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  108 bits (271), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 7/260 (2%)

Query: 127 VQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTG 186
           +++   +  + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ + 
Sbjct: 119 IENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA 178

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVI 245
             +    A+  L +   +  P  + ++ + GL  G  YSVP P LR K     A   +  
Sbjct: 179 WLLVIFFAIAGLLVVGFNFGP-FITSLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIAT 235

Query: 246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305
           + G +L    + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F +
Sbjct: 236 VRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQI 294

Query: 306 QTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRK 365
            TL   LG   +  L   ++L+ Y  A+        +    + I  H+ILA  +  ++  
Sbjct: 295 STLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWV 354

Query: 366 VDLDNFDSQF--GFYMFLWQ 383
           ++  N+  +   G+Y F+W 
Sbjct: 355 LEKANYTKEAISGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 5/241 (2%)

Query: 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLS 204
           +VA I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ T   +    A    ++   +
Sbjct: 130 LVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTN 189

Query: 205 GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLL 264
             P +          G  YSVP PF R K +   A   +  + G +L    +  ++   L
Sbjct: 190 FGPFITSLYCLGLFLGTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-AL 246

Query: 265 GKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324
           G  F+ + P  F T  ++++A V  + KDLPDVEGD+ + + TL   LG   +  L   +
Sbjct: 247 GLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGL 306

Query: 325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF--DSQFGFYMFLW 382
           ++  Y  A+           + V +  H  LA+ +  ++  ++   +  D+   +Y F+W
Sbjct: 307 LIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIW 366

Query: 383 Q 383
            
Sbjct: 367 N 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 27/202 (13%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D +N+P  P+ SG +    G+ I     +LSLA+ ++ G P    A +   L
Sbjct: 71  NNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG-PWGFGATVFGVL 129

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ-IPYFIHSQTYLLGKPFEVTGPFVFA 277
              AYSV    +R K   +  P     L+ L  + +P+F  +     G       P  F 
Sbjct: 130 AAWAYSVEP--IRLKRSGWWGPG----LVALCYEGLPWFTGAAVLSAGA------PSFFI 177

Query: 278 TAIMSIYAF-VNGL--LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM--------- 325
             +  +YAF  +G+  L D   +EGD+  G+++L V+LG E    L   +M         
Sbjct: 178 VTVALLYAFGAHGIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILVIT 237

Query: 326 -LLGYGGAVVAGATSTLMISKL 346
            L+ +G  + AG  + L++++L
Sbjct: 238 LLVIWGKPIHAGIITALLVAQL 259

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           ++N   D EID INKPY P+ SG +S    + I    +L  +AL+   G    L  V A+
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLGFIEFLI-VTAF 112

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L+  AY+      RW   T + P   ++ +G+         + T + G      G    
Sbjct: 113 SLSWYAYA------RWLKRTGV-PGNALVSLGV---------AFTLIFGS--LAAGNLTN 154

Query: 277 ATAIMSIYAFVNGLLKD----LPDVEGDKAFGMQTLCVLLGKEK 316
              I S  AF + L+++    + D+ GD+A G++T+ V +G ++
Sbjct: 155 KVIIFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIGVKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D IN+P+ P+ SG +    G+ I    +LLSL + +  GS   +  ++    
Sbjct: 72  NDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGSWGFVATLLG--- 128

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG-PFVFA 277
             AA++  +  +R K   +  P     L+GL  +   +I     LL       G P V  
Sbjct: 129 VAAAWAYSVEPIRLKRSGWWGPG----LVGLAYEGLPWITGAAVLLATADTSPGFPIVMM 184

Query: 278 TAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327
             + ++ A     + D   +EGD+  G+++L  + G E    +   +M L
Sbjct: 185 ATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGL 234

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 36/170 (21%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D+EIDK+NKP  P+ SG++S+ + +       +  + LAFL  +P  LC +IA  
Sbjct: 62  LNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLV-NP--LCGIIAL- 117

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQT-YLLGKPFEVTGPFVF 276
                                    L++    + + P+F ++   YL G  F   G  VF
Sbjct: 118 --------------------FNSMVLILYAQSLKRTPFFGNASVGYLTGSTFLFGGA-VF 156

Query: 277 ATA----------IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
             A          + ++      ++KD+ D+ GDK  G +TL +L+G +K
Sbjct: 157 GMAGLQALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKK 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224143266	284	predicted protein [Populus trichocarpa]	0.733	1.0	0.471	2e-74
219842170	411	homogentisate geranylgeranyl transferase	0.974	0.917	0.388	1e-69
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.976	0.949	0.376	8e-68
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.971	0.954	0.368	8e-68
225446000	406	PREDICTED: homogentisate phytyltransfera	0.790	0.753	0.421	1e-67
51949754	411	homogentisate phytylprenyltransferase [M	0.790	0.744	0.433	1e-67
56126261	406	homogentisate geranylgeranyl transferase	0.790	0.753	0.421	2e-67
147858275	406	hypothetical protein VITISV_043992 [Viti	0.790	0.753	0.415	4e-67
338810328	404	RecName: Full=Probable homogentisate phy	0.974	0.933	0.368	5e-67
171190282	404	homogentisic acid phytyltransferase [Ses	0.785	0.752	0.414	1e-66

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 199/284 (70%)

Query: 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
           L++    +R +  I  ++ +TSV  LPV+++S+++P F +G+LKA+V  + MNI +  LN
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 160 QICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT 219
           Q+ DVEIDK+NKPYLPLASG+ SMGTG+AI + S L S A+  +  SP +  A++   + 
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
           G+ YS+ LPFLRWK   F+A   ++I+  +++Q+ +F+H Q ++LGK   VT   VFATA
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATS 339
            M  ++ V  L KD+PDV+GD+ +G+Q+  V LG+E+V  LCVNM+L+ YG AVV GA+S
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           T + SK +TI+GH  LA ++WLR+R VDL + DS   FYMF+W+
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/391 (38%), Positives = 232/391 (59%), Gaps = 14/391 (3%)

Query: 6   CLNLAPKFNPLQSPG------CSRKFASPIVTQRH-KSSIKCSSQSSFSFPNQNK----I 54
           CLN  PK+  L  PG        +K  + I+ +   K  I CS +S     N  K    +
Sbjct: 9   CLNTPPKYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYV 67

Query: 55  SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQIN 114
             N      K  +P      + L  + +D     + S    +   LN++   +R +  I 
Sbjct: 68  LRNLRILTRKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174
            I+ +TSV  LPV+++  ++P + +G+LKA+V  + MNI +  LNQ+ DVEIDK+NKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKS 234
           PLASG+ SM TGI I + S LLSL +     SP +L A++     G+ YS+ LPFLRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDL 294
           H F+A   ++I+  +++Q+ +F+H Q ++LGK   +    +FATA M  ++    L KD+
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDI 307

Query: 295 PDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT--STLMISKLVTIIGH 352
           PDVEGD+ +G+Q+  V LG+E+VL LCVNM+L+ YG AVV GA+  S+L+  KL+T+IGH
Sbjct: 308 PDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGH 367

Query: 353 IILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
             +A ++W++++ VDL +  S   FYMF+W+
Sbjct: 368 STIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 232/388 (59%), Gaps = 10/388 (2%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKFASPIVTQ---RHKSSIK--CSSQSSFSFPNQNKISHN 57
           M  L L P  F P +S  CSR+    + +Q   R  S+I   CS +     P  +   HN
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHN 60

Query: 58  NNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIV 117
           + K        L+  +  A  +    +KP A  S  +     LNA    +R +  I  I+
Sbjct: 61  DRKLVHTRTNELSHLN--ATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGTIM 116

Query: 118 SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177
           S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LPLA
Sbjct: 117 SIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLPLA 176

Query: 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTF 237
           SGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK    
Sbjct: 177 SGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKRFAV 236

Query: 238 MAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDV 297
           +A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+PD+
Sbjct: 237 VAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDIPDI 296

Query: 298 EGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILAL 357
           EGD+ +G+++  V LG+++V  +CV ++ + Y  A+V GATS+ + SK VT++GH +LA 
Sbjct: 297 EGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYSVAMVIGATSSCLWSKFVTVLGHAVLAS 356

Query: 358 MMWLRSRKVDLDNFDSQFGFYMFLWQAS 385
           ++W R+R +DL +  +   FYMF+W+ +
Sbjct: 357 ILWKRARSLDLMSKAAITSFYMFIWKVN 384

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 230/385 (59%), Gaps = 9/385 (2%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKF----ASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNN 58
           M  L L P  F P +S  CSR+     +  ++ +    ++ CS +     P  +   HN+
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHND 60

Query: 59  NKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVS 118
            K        L+  +  A  +    +KP A  S  +     LNA    +R +  I  I+S
Sbjct: 61  RKLVHTRTNELSHLN--ATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGTIMS 116

Query: 119 VTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178
           + SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LPLAS
Sbjct: 117 IISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLPLAS 176

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFM 238
           GE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK    +
Sbjct: 177 GEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKRFAVV 236

Query: 239 APFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVE 298
           A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+PD+E
Sbjct: 237 AAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDIPDIE 296

Query: 299 GDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALM 358
           GD+ +G+++  V LG+++V  +CV ++ + Y  A+V GATS+ + SK VT++GH +LA +
Sbjct: 297 GDRIYGIRSFSVRLGQKRVFWICVYLLEMAYSVAMVIGATSSCLWSKFVTVLGHAVLASI 356

Query: 359 MWLRSRKVDLDNFDSQFGFYMFLWQ 383
           +W R+R +DL +  +   FYMF+W+
Sbjct: 357 LWKRARSLDLMSKAAITSFYMFIWK 381

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 196/306 (64%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S L  VK  L+A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTLTPVKNALDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A +S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGD+ FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ VDL +  +   F
Sbjct: 328 FWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSF 387

Query: 378 YMFLWQ 383
           YMF+WQ
Sbjct: 388 YMFIWQ 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51949754|gb|AAU14795.1| homogentisate phytylprenyltransferase [Medicago sativa]

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 199/307 (64%), Gaps = 1/307 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L+ VK  L+A    +R +  I   +S+ SV  L V+ LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILDTVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256
           S  LA++ GS  +  A+    + G AYS+ +P LRWK    +A   ++ +  +I+Q+ +F
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIVQLAFF 271

Query: 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +H QT++  +P   + P +FATA MS ++ V  L KD+PD+EGDK FG+Q+  V LG+++
Sbjct: 272 LHMQTFVYKRPIVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVRLGQKR 331

Query: 317 VLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG 376
           V  +CV ++ L YG ++V GATS+ + SK+VT +GH +LA +++  ++ VDL +  S   
Sbjct: 332 VFWICVTLLELAYGVSLVVGATSSCLWSKIVTSLGHAVLASILFNHAKSVDLKSKASITS 391

Query: 377 FYMFLWQ 383
           FYMF+W+
Sbjct: 392 FYMFIWK 398

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 195/306 (63%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S L  VK  L A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTLTPVKNALGAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A +S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGD+ FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ VDL +  +   F
Sbjct: 328 FWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSF 387

Query: 378 YMFLWQ 383
           YMF+WQ
Sbjct: 388 YMFIWQ 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 196/306 (64%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S    VK  ++A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTWTPVKNAIDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A++S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAVMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGDK FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ +DL +  +   F
Sbjct: 328 FWICILLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSF 387

Query: 378 YMFLWQ 383
           YMF+WQ
Sbjct: 388 YMFIWQ 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338810328|sp|B7FA90.1|HPT1_ORYSJ RecName: Full=Probable homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=OsVTE2-1; Flags: Precursor gi|215769309|dbj|BAH01538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 17/394 (4%)

Query: 4   MQCLNLAPKFNPLQSPGCSR-------KFASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +         F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTI 349
           L KD+PD+EGD+ FG+++  V LG++KV  +CV ++ + Y  A++ GATS  + SK  T+
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATV 357

Query: 350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           +GH ILA ++W RSR +DL +  +   FYMF+W+
Sbjct: 358 VGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190282|gb|ACB42447.1| homogentisic acid phytyltransferase [Sesamum indicum]

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 199/311 (63%), Gaps = 7/311 (2%)

Query: 73  DGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ 132
            GH+L     +++PA +P     V+   +A    +R +  I   +S+ SV  L VQ LS 
Sbjct: 88  SGHSL-----ESEPAKSP--WRSVQHAFDAFYRFSRPHTVIGTALSIISVSLLAVQKLSD 140

Query: 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG 192
            +P F  GVL+A+VA + MNI +  LNQ+ D+EIDK+NKPYLPLASGE S+ TG+AI + 
Sbjct: 141 FSPLFFTGVLEAIVAALLMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVTTGVAIVSS 200

Query: 193 SALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252
            A+LS  L ++ GS  +  A+    L G AYSV LP LRWK    +A   ++ +  +I+Q
Sbjct: 201 FAILSFWLGYVVGSWPLFWALSVSFLLGTAYSVNLPLLRWKRFAVIAAMCILSVRAVIVQ 260

Query: 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLL 312
           I +++H QTY+  +P   T P +FATA MS ++ V  L KD+PD+ GDK +G+Q+  V L
Sbjct: 261 IAFYLHIQTYVFRRPAVFTKPVIFATAFMSFFSVVIALFKDIPDIAGDKIYGIQSFSVRL 320

Query: 313 GKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFD 372
           G+E+V  +C++++ + Y  A++ GAT++ + SK +T+IGH +L L++W R++ +DL +  
Sbjct: 321 GQERVFWICISLLEMAYAVALLVGATTSCIWSKWITVIGHTLLGLLLWDRAKSIDLKSKA 380

Query: 373 SQFGFYMFLWQ 383
           S   FYMF+W+
Sbjct: 381 SITSFYMFIWK 391

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.733	0.722	0.394	2.8e-57
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.852	0.804	0.332	6e-48
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.744	0.707	0.354	4.2e-47
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.627	0.618	0.296	2.2e-25
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.403	0.403	0.273	0.0003

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 112/284 (39%), Positives = 172/284 (60%)

Query:   100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
             L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI +  LN
Sbjct:    97 LDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLN 156

Query:   160 QICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLT 219
             Q+ DVEIDK+NKPYLPLASGE S+ TGIAI                   +  A+    + 
Sbjct:   157 QLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFML 216

Query:   220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
             G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +FATA
Sbjct:   217 GTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query:   280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXXXXTS 339
              MS ++ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ + Y        TS
Sbjct:   277 FMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATS 336

Query:   340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
               + SK+++++GH+ILA  +W R++ VDL +       YMF+W+
Sbjct:   337 PFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 111/334 (33%), Positives = 177/334 (52%)

Query:    50 NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
             N+   + N +K   K  V  A+ +    Q  E + +     S  + V   L+      R 
Sbjct:    68 NEGGSTSNTSKECEKKYVVNAISE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRP 123

Query:   110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
             YA   I++  T    + V+ LS ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKI
Sbjct:   124 YAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKI 183

Query:   170 NKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLTGAAYSVPLPF 229
             NKP LPLASG+LS    + I                   +   V    +  +AY+V LP 
Sbjct:   184 NKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPL 243

Query:   230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
             LRWK +  +     +  + +   + +F+H QT +  +P     P +F TAI+SIYA V  
Sbjct:   244 LRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIA 303

Query:   290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXXXXTSTLMISKLVTI 349
             L KD+PD+EGD+ FG+Q+L + LG ++V  +CV+++ + Y        TS ++ SK++T+
Sbjct:   304 LFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITV 363

Query:   350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
             +GH +LA ++W  ++ VDL +      FYMF+W+
Sbjct:   364 LGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 102/288 (35%), Positives = 160/288 (55%)

Query:    96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISL 155
             V   L+      R YA  ++++  T    + V+ LS ++ AF +G L+ VVA I ++I  
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   156 CSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIA 215
               LNQ+CD+EIDKINKP LPLASG LS    + I                   +   V  
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   216 WGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
               +  AAY+V LP LRWK +  +   + +  + +   + +F+H QT +  +P     P +
Sbjct:   227 CCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLI 286

Query:   276 FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXX 335
             F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + LG ++V  +CV+++ + Y      
Sbjct:   287 FCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILV 346

Query:   336 XXTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
               TS ++ SK++T++GH ILA ++W  ++  DL +      FYMF+W+
Sbjct:   347 GATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 74/250 (29%), Positives = 123/250 (49%)

Query:   136 AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXX 195
             + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ +   +      
Sbjct:   135 SLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 194

Query:   196 XXXXXXXXXXXPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254
                        P +  ++ + GL  G  YSVP P LR K     A   +  + G +L   
Sbjct:   195 AGLLVVGFNFGPFIT-SLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFG 251

Query:   255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314
              + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F + TL   LG 
Sbjct:   252 VY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGV 310

Query:   315 EKVLPLCVNMMLLGYXXXXXXXXTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ 374
               +  L   ++L+ Y            +    + I  H+ILA  +  ++  ++  N+  +
Sbjct:   311 RNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKE 370

Query:   375 F--GFYMFLW 382
                G+Y F+W
Sbjct:   371 AISGYYRFIW 380

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
 Identities = 47/172 (27%), Positives = 73/172 (42%)

Query:   157 SLNQICDVEIDKINKPYLPLASGELS---MGTGIAICXXXXXXXXXXX---XXXXXPAVL 210
             ++N   D +ID IN+PY P+ SG +S   + T + +                    P V 
Sbjct:   153 TINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAGHTTPTVF 212

Query:   211 CAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEV 270
                +   L    YS P P L+ K + ++  F L       + +P++   Q  L G    +
Sbjct:   213 YLALGGSLLSYIYSAP-P-LKLKQNGWVGNFALG---ASYISLPWWA-GQA-LFGT---L 262

Query:   271 TGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV 322
             T   V  T + SI      ++ D   VEGD+A G+Q+L V  G E    +CV
Sbjct:   263 TPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICV 314


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      387       351   0.00078  117 3  11 22  0.45    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.27u 0.10s 27.37t   Elapsed:  00:00:01
  Total cpu time:  27.27u 0.10s 27.37t   Elapsed:  00:00:01
  Start:  Sat May 11 16:03:49 2013   End:  Sat May 11 16:03:50 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7FA90	HPT1_ORYSJ	2, ., 5, ., 1, ., n, 8	0.3680	0.9741	0.9331	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-101
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-53
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-24
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	4e-22
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	6e-15
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-13
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-11
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-11
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	1e-09
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-08
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	4e-08
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	2e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	3e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	9e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	2e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	4e-04
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  300 bits (771), Expect = e-101
 Identities = 115/267 (43%), Positives = 181/267 (67%)

Query: 117 VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPL 176
           + +TSV  L V+SLS  +P F  G+L+A+V  + MNI +  LNQ+ D+EIDK+NKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHT 236
           ASGE S+ TG+AI    A++S  + ++ GS  +  A+    + G AYS+ LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 237 FMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPD 296
             A   ++ +  +++Q+ +F+H QT++LG+P   T P +FATA M  ++ V  L KD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 297 VEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILA 356
           VEGD+ FG+++  V LG+++V  LCVN++ + Y  A++ GA+S+ + SK++T++GH ILA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 357 LMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
            ++W R++ VDL +  +   FYMF+W+
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  179 bits (456), Expect = 1e-53
 Identities = 87/254 (34%), Positives = 138/254 (54%), Gaps = 4/254 (1%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIA 188
           S + +  A L  +L A +A +  N+ +  LNQ+ D+EID+INKP+LPLA+GE S   G  
Sbjct: 43  SSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQR 102

Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248
           I   + +L+L LA L G P +L  V    L G AYS  LP +R K    +A   +  + G
Sbjct: 103 IVIITGILALILAALLG-PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRG 159

Query: 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTL 308
           +I+ +  F+H Q +LLG    +       T  + ++ F   + KD+PD+EGD+ + + T 
Sbjct: 160 VIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTF 218

Query: 309 CVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDL 368
            + LGK+ V  L   ++   Y G +  G  S   ++    I+ H+IL  ++W RS++VDL
Sbjct: 219 TLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDL 278

Query: 369 DNFDSQFGFYMFLW 382
            +  +   FY F+W
Sbjct: 279 QDKQAIAQFYQFIW 292

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score =  100 bits (250), Expect = 2e-24
 Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 18/256 (7%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTG 186
           +L+      LL +L  ++A + +  +   LN   D EID    NKP  PL SG +S    
Sbjct: 13  ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246
           + +     LL L LA L G   +L  ++   L G  YS   P LR K    +    + + 
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYS---PPLRLKRRPLLGELVVGLA 128

Query: 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQ 306
            GL++ +  +                 F+ + AI+        L  D+ DVEGD+  G++
Sbjct: 129 FGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAIL--------LTNDIRDVEGDRKAGIR 180

Query: 307 TLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV 366
           TL V LG+++ L L      L    A++      L+++ L+ ++  ++LAL + + +R +
Sbjct: 181 TLPVRLGRKRALAL----YALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLL 236

Query: 367 DLDNFDSQFGFYMFLW 382
              N +     ++F+ 
Sbjct: 237 RRRNPEEPARTFLFIA 252

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 24/252 (9%)

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSMGTGIAICAGSAL 195
           L  +L A +A      +   +N + D EID+IN      PL SG +S+   + +     L
Sbjct: 46  LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105

Query: 196 LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255
           L LALA L    A L   +A  +   AY         K  TF+    L +  GL      
Sbjct: 106 LGLALALLLNPLAFL-LSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGA 158

Query: 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKE 315
                +  L          +   AI+    +   ++  + D+EGD+  G+++L VL G +
Sbjct: 159 AAVGGSLPL------LAWLLLLAAILWTLGYD--IIYAIQDIEGDRKAGLKSLPVLFGIK 210

Query: 316 KVLPLCVNMMLLGYGGAVVAGATSTLM--ISKLVTIIGHIILALMMWLRSRKVDLDNFDS 373
           K L      + L    A        L+  +  L+ ++G ++ AL++  +   VD+ +  +
Sbjct: 211 KAL-----ALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPA 265

Query: 374 QFGFYMFLWQAS 385
            F  +       
Sbjct: 266 CFALFDVNLLLG 277

Length = 289

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 74.2 bits (183), Expect = 6e-15
 Identities = 59/272 (21%), Positives = 103/272 (37%), Gaps = 15/272 (5%)

Query: 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173
           N++++      + + SL    P   L +L   +    + I    +N + D+E D INKP 
Sbjct: 15  NLLIAALGQSLVYMASLLLGLPISWLLLLITFLIAAAVYI----INYLTDLEEDIINKPE 70

Query: 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWK 233
             + S   + G  + +      L   L  + G P      I   + G  YSV     R K
Sbjct: 71  RVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-KRRLK 129

Query: 234 SHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKD 293
                    + +L  L   I    + Q  +           VF         F+  ++ D
Sbjct: 130 RIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLY---AVFIFLKS----FIREIVFD 182

Query: 294 LPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHI 353
           + D+EGD+  G++TL ++LGKE+ L   + + LL     ++   T  L +  LV ++   
Sbjct: 183 IKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLA 242

Query: 354 ILALMM---WLRSRKVDLDNFDSQFGFYMFLW 382
            +   +   +    K DL         +M L 
Sbjct: 243 YVLYYIIKLFAADDKKDLLYLSLLDKEHMLLG 274

Length = 285

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           + K+ A   + R    +   ++V     + +  L  +  A LLG L A  A    N    
Sbjct: 1   RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP-LDEA-LLGFLTAFFASGSANA--- 55

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LN   D E+D+IN+P  P+ SG +S    + +     +L L  A+L    A L  ++  
Sbjct: 56  -LNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L G  Y+      + K +  +    +  L G+      FI      +G+  E       
Sbjct: 115 VL-GILYN-----WKLKEYGLIGNLYVAFLTGMT-----FIFG-GIAVGELNE------- 155

Query: 277 ATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328
           A  +++  AF+  L    +KD+ DVEGD+  G +TL +L G++    +   + +L 
Sbjct: 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA 211

Length = 279

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D E+D IN+PY P+ SG +S+   + + A   +L LA+A+L G P V  A +   
Sbjct: 84  LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGL 142

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIPYFIHSQTYLLGKPFEVTGPFVF 276
                YS P P LR K + ++        +GL    +P++  +  +  G P   + P V 
Sbjct: 143 FLAWIYSAP-P-LRLKQNGWLGN----YAVGLSYEGLPWWAGAAAFGAGLP---SWPIVI 193

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
              + S+ A     L D   VEGD+  G+++L V+ G++    +   ++ L     +   
Sbjct: 194 LALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI--- 250

Query: 337 ATSTLMISKLVTIIGHIILALM--------MWLRS 363
               L+++    +   I+  L+          LR 
Sbjct: 251 ---ALLLAWGQPLYAAIVGLLLIPQITLQDRLLRD 282

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 40/205 (19%), Positives = 86/205 (41%), Gaps = 21/205 (10%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           S+N   D ++D IN+P  P+ SG +S+           +  L +A + G+  ++   +  
Sbjct: 56  SINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVG 115

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            +    YS+P P ++ K + ++ P  + +       +P+      +       V    ++
Sbjct: 116 IVLAVIYSMP-P-IKLKRNGWLGPPAVGLSY---EGLPWMAGHAIFAPLTWQSVVVALIY 170

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
           +     I   +N    D   VEGD+  G+++L V++G ++   + V  +           
Sbjct: 171 SLGAHGI-MTLN----DFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTI----------- 214

Query: 337 ATSTLMISKLVTIIGHIILALMMWL 361
                M+  L+ I G   +A +++L
Sbjct: 215 NVFQAMVIGLLLIWGQPWVATIVFL 239

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 28/167 (16%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N I D+EIDKINKP  P+ SG +S+           ++ L L+      A L A++   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN-- 113

Query: 218 LTGAAYSVPLPF--LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
                 S+ L       K    +    +  L GL      FI       G         +
Sbjct: 114 ------SILLYLYAKDLKKTGLIGNLIVAYLTGLS-----FIFG-----GLAVFNVLRII 157

Query: 276 FATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEKVL 318
               I+ + AF +      +KD+ D+EGD    + TL +  G +K  
Sbjct: 158 ----ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSW 200

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCA 212
           ++N   D +ID IN+PY P+ SG +S    I       +  +A+AF+    +G       
Sbjct: 72  TINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVF 131

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           V+A   +  A+    P L+ K + ++  F L       + +P++  +   L G   E+  
Sbjct: 132 VLALFGSFIAFIYSAPPLKLKQNGWLGNFAL---GASYIALPWW--AGHALFG---ELNP 183

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG-- 330
                T I SI      ++ D   VEGD+A G+Q+L V  G E    +CV  + +  G  
Sbjct: 184 DIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI 243

Query: 331 -GAVVAGATSTLMISKLVTIIGHIILALMMWLR 362
              ++A   +    + +  II  I      +L+
Sbjct: 244 AAYLLAIGENLYAAALVALIIPQITFQDKYFLK 276

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 50/206 (24%)

Query: 136 AFLLGVLKAVVAQ-----------IFMNISL-CS----LNQICDVEIDKINKPYLPLASG 179
           A ++G+L ++VA            IF+ + L CS    +N   D EIDKIN+P  PL  G
Sbjct: 18  AGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77

Query: 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT--GAAYSVPLPF---LRWKS 234
            +S    +        + LALA+L    A L A+ A+ L    A    PLPF   +    
Sbjct: 78  AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVAL 137

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF-VN---GL 290
            T   P    I +G I    Y                         ++I AF VN    +
Sbjct: 138 LTGATPIYGAIAVGRIGLAGY-------------------------LAICAFLVNVAREI 172

Query: 291 LKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +KD+ D+EGDKA G +TL +++GK++
Sbjct: 173 MKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL------SGSPAVL 210
           ++N   D EID IN+PY P+ SG +S    I       L  L LA+          P V 
Sbjct: 141 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF 200

Query: 211 CAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEV 270
              +   L    YS P P L+ K + ++  + L       + +P++  +   L G    +
Sbjct: 201 YLALGGSLLSYIYSAP-P-LKLKQNGWIGNYAL---GASYISLPWW--AGQALFG---TL 250

Query: 271 TGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV 322
           T   V  T + SI      ++ D   +EGD+A G+Q+L V  G E    +CV
Sbjct: 251 TPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Length = 375

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 126 PVQSLSQVTPAFLLGVLKAVVAQIFMNISLCS-----LNQICDVEIDKI--NKPYLPLAS 178
           P+ + + + P  LL VL A V   F    L S     +N I DVE D++   K   P+AS
Sbjct: 33  PIFAGNLLNPGALLKVLLAFVL--F---CLASSAVYLVNDIRDVEADRLHPTKRNRPIAS 87

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
           G +S+     +     + SLALA+L  SP +   ++ + +   AYS
Sbjct: 88  GVVSVSLAYILAVVLLVASLALAYLL-SPKLALVLLVYLVLNLAYS 132

Length = 295

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 54/202 (26%), Positives = 76/202 (37%), Gaps = 57/202 (28%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N   D EID+IN+P  P+ SG +S    +A    S LL  A   L+     LC  IA  
Sbjct: 57  INDYFDREIDRINRPDRPIPSGAVSPRGALAF---SILLFAAGVALAFLLPPLCLAIA-- 111

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH-------SQTYLLGKPF-- 268
                                    L   + L+L              S  YL G  F  
Sbjct: 112 -------------------------LFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLF 146

Query: 269 --------EVTGPFV-FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP 319
                    +    V FA A ++  A    ++KD+ D+EGD+A G +TL +L+G  K L 
Sbjct: 147 GGAAVGTEGLLALLVLFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKAL- 203

Query: 320 LCVNMMLLGYGGAVVAGATSTL 341
                  +     +VA A S L
Sbjct: 204 ------YVAAAFLLVAVAASPL 219

Length = 276

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 33/224 (14%)

Query: 152 NISLCSLNQICDVEIDKINKPYLPLASGELSMGTG----IAICAGSALLSLALAFLSGSP 207
           N+ L  +N + D + D++N               G    +   A S  L+LA   +    
Sbjct: 58  NVFLYGVNDVFDADTDELNPKK---DREREVRYRGDRRVLVAVALSGALALAFLLVLPPA 114

Query: 208 AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFT--LVILMGLILQIPYFIHSQTYLLG 265
           A   A++A+ +    YS P P LR+K+   +   +  L IL G+     Y + S +  L 
Sbjct: 115 AWP-ALLAFLVLSVEYSAP-P-LRFKTTPVLDSLSNGLYILPGVA---AYALVSGS--LP 166

Query: 266 KPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM 325
               V G +++A   M  ++ +       PD+E D+A G++T   +LG+ +    C    
Sbjct: 167 PLLAVAGGWLWAMG-MHTFSAI-------PDIEPDRAAGIRTTATVLGERRTYAYCAACW 218

Query: 326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLD 369
           LL    A  A A   L +  L+ +      AL++ +    + +D
Sbjct: 219 LL----AAAAFAAVDLRLGALLLVYP----ALVLAILRAGIAVD 254

Length = 282

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 21/121 (17%)

Query: 141 VLKAVVAQIFMNISLCS-----LNQICDVEIDKIN--KPYLPLASGELSMGTGIAICAGS 193
           +L A++A  F+  SLC+     LN + D+E D+ +  K   P ASG L +  G+A     
Sbjct: 225 LLAALLA--FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL 282

Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSH------TFMAPFTLVILM 247
            L  LALA     PA L  ++A+     AYS     LR K        T  A +TL I+ 
Sbjct: 283 LLAGLALALA-LGPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIA 336

Query: 248 G 248
           G
Sbjct: 337 G 337

Length = 479

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG------SPAVL 210
           S+N   D+E+D++N+P  P+ SG LS    +       LL++ L    G         V+
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 211 CAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPF- 268
            + I  GL     YS P P    K+    AP  +    G I          T+L      
Sbjct: 128 ISSILAGLFVAYIYSAP-PLKLKKNILTSAP-AVGFSYGFI----------TFLSANALF 175

Query: 269 -EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG 313
            ++    V+   +    A    ++ D   VEGDK  G+++L V++G
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	99.98
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PLN02776	341	prenyltransferase	99.96
PLN02922	315	prenyltransferase	99.96
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
PRK08238	479	hypothetical protein; Validated	99.89
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.73
KOG4581	359	consensus Predicted membrane protein [Function unk	99.56
PRK13591	307	ubiA prenyltransferase; Provisional	91.11
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	90.04
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.65
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.63
PRK12872	285	ubiA prenyltransferase; Reviewed	88.4
PLN02922	315	prenyltransferase	87.43
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	84.19
PRK13105	282	ubiA prenyltransferase; Reviewed	84.03
PRK12884	279	ubiA prenyltransferase; Reviewed	83.51
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	83.24
PLN00012	375	chlorophyll synthetase; Provisional	82.63
PRK13592	299	ubiA prenyltransferase; Provisional	82.01
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	81.74
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	80.85
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	80.02

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=4.2e-49  Score=384.65  Aligned_cols=290  Identities=29%  Similarity=0.465  Sum_probs=240.7

Q ss_pred             chhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhh----hhhccc
Q 016572           89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCS----LNQICD  163 (387)
Q Consensus        89 ~~~~~~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~----iND~~D  163 (387)
                      |++.++++.+.+++|+|++|||+++++.++++.+.++|...... .....    +...++.++++.++|+    +|||+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~----~~~~l~~~~~~~~~nv~i~~iNd~~D   77 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALAN----LGLLLGAWIACLCGNVYIVGLNQLTD   77 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHH----HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            46677788889999999999999999999988777766432221 11112    2334444555555555    999999


Q ss_pred             ccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHH
Q 016572          164 VEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL  243 (387)
Q Consensus       164 ~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i  243 (387)
                      +|+|++|||+||+++|++|+++++.+.+++.++++++++.+|+..+.++ +++.++++.||.  ||+|+||+++.+++++
T Consensus        78 ~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i  154 (308)
T PRK12887         78 IEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSL--PPIRLKRFPLLAALCI  154 (308)
T ss_pred             HHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcC--CchhhcccchhHHHHH
Confidence            9999999999999999999999999999999999999999997766555 578889999998  9999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHH
Q 016572          244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVN  323 (387)
Q Consensus       244 ~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~  323 (387)
                      +..+|..+.+|.+.+.... .+....++...+++.++.++|+.+++++||++|+|||++.|+||+|+++|++++.+++..
T Consensus       155 ~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~  233 (308)
T PRK12887        155 FTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW  233 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHH
Confidence            8888877778876643222 222334455666666777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhcc
Q 016572          324 MMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASD  386 (387)
Q Consensus       324 l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~lf~  386 (387)
                      ++.++|+..++.+......+...++.++|++.+.++++|.+++|.+|+++..+||||||||||
T Consensus       234 ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~  296 (308)
T PRK12887        234 VLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFF  296 (308)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence            999999998888777666666677779999999999999999999999999999999999997

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=4.5e-49  Score=373.50  Aligned_cols=264  Identities=42%  Similarity=0.800  Sum_probs=236.0

Q ss_pred             HHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHH
Q 016572          123 CFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAF  202 (387)
Q Consensus       123 ~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~  202 (387)
                      .++|.+..+++++..+.+.+.+++++.+++.+...+|||+|+|+||+|||+||+|||++|+++|+.+..++.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44555555556655677788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHH
Q 016572          203 LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMS  282 (387)
Q Consensus       203 ~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~  282 (387)
                      .+|+++++.++..+++++++||..+||+|+||++++...++....|...++|++.|+++.++|++..++++.++..+++.
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~  166 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC  166 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence            99988777776677789999998779999999999988887777777888999999888888865555556666666777


Q ss_pred             HHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016572          283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLR  362 (387)
Q Consensus       283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~  362 (387)
                      ++.++++++||++|+|||++.|++|+|+++|++++.+++..++.++|+..++.|...+..+...++..||++++..+|+|
T Consensus       167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~r  246 (280)
T PLN02878        167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQR  246 (280)
T ss_pred             HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999988888888777788889999999999999999


Q ss_pred             HHHcCCCCHHhHHHHHHHHHHhcc
Q 016572          363 SRKVDLDNFDSQFGFYMFLWQASD  386 (387)
Q Consensus       363 ~~~~d~~~~~~~~~F~~~iw~lf~  386 (387)
                      .+++|++++++..+||||||||||
T Consensus       247 s~~vD~~sk~~i~~fY~fiwklfy  270 (280)
T PLN02878        247 AQSVDLSSKAAITSFYMFIWKLFY  270 (280)
T ss_pred             hHhcCcccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1e-39  Score=314.69  Aligned_cols=259  Identities=16%  Similarity=0.126  Sum_probs=210.4

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCcc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RPl  176 (387)
                      ++++|+|++||++.+.....+++|.++|.+..+  ++.   .+++.+++++++++++|++||++|+|+|++|+|  +||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999888888888899999854322  221   134456788999999999999999999999966  9999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (387)
Q Consensus       177 ~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~  256 (387)
                      |+|++|++||+.+.+++.++++.+++.+|+.++.++. ....+...|+.      +||+++++|+++|+..|.++.+|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999998877664 45656677876      8999999999999888876666654


Q ss_pred             HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (387)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g  336 (387)
                      +     +.|. ..+....+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++.....+.|
T Consensus       150 A-----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g  223 (286)
T PRK12895        150 A-----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG  223 (286)
T ss_pred             H-----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence            3     2332 222223344556678899999999999999999999999999999999998777677777776666666


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhH-HHHHH
Q 016572          337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ-FGFYM  379 (387)
Q Consensus       337 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~-~~F~~  379 (387)
                      ....    +.+|+++.++.+.++.+|++.+|.+|+++| ..||.
T Consensus       224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~  263 (286)
T PRK12895        224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN  263 (286)
T ss_pred             HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            5432    356778999999999999999999999999 66663

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.6e-38  Score=306.21  Aligned_cols=262  Identities=18%  Similarity=0.191  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572           94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (387)
Q Consensus        94 ~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~-  172 (387)
                      ..+++++++|+|++||++.++...++++|+++|.++.+  ++..   +++++++.+++++++|++|||+|+|+|++|+| 
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            34567899999999999999998888999999865433  3221   45577899999999999999999999999965 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (387)
Q Consensus       173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~  251 (387)
                       +||+|+|++|++||+.+.+++.+.++++++.+|+.+..++. ++.++.+.|+.      +||+++++|+++|+.+|..+
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence             89999999999999999877777777778888988777664 45556778986      89999999999999888666


Q ss_pred             HHHHHHHhhhHhhCCCC-----CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016572          252 QIPYFIHSQTYLLGKPF-----EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML  326 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~-----~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~  326 (387)
                      ..|+.+.     .|...     ..+...+++++...+|+.++|++|++||+|+|++.|+||+|+++| +++.++...++.
T Consensus       157 ~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~  230 (300)
T PRK13106        157 FSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL  230 (300)
T ss_pred             HHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence            6665432     23211     111223334455678999999999999999999999999999999 888888887887


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH
Q 016572          327 LGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY  378 (387)
Q Consensus       327 l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~  378 (387)
                      ++.++..+.+....+   +..|+++.++...++.+|+..++.+  +.|...|
T Consensus       231 ~~v~l~~~~~~~~~l---g~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F  277 (300)
T PRK13106        231 FSVVLDLLGDLYYGL---GPIAIAATILHGLIMAYAYYLASKK--GDFGRAF  277 (300)
T ss_pred             HHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence            777777777766544   3467778888889999999999987  6665544

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1e-37  Score=302.49  Aligned_cols=270  Identities=19%  Similarity=0.189  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhccc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 016572           94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN  170 (387)
Q Consensus        94 ~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n  170 (387)
                      ++.++++++|+|++||++.+.+...++.|.++|...   ...+++..   +++++++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            356678999999999999999988888888887521   11233322   456788999999999999999999999999


Q ss_pred             CC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572          171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (387)
Q Consensus       171 ~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g  248 (387)
                      +|  +||+|+|++|++||+.+++++.++++.+++.+|+.+..++ +..++...+||.      +||++.++++++|+..|
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            85  8999999999999999999888888888888898877666 356667889997      89999999999999888


Q ss_pred             HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (387)
Q Consensus       249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~  328 (387)
                      .++.+|+.+     +.|.   .+...+++.+...+|+.+.+++|+++|+|+|+++|++|+|+++|++++.++......+.
T Consensus       152 ~~~l~G~~a-----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        152 LAPIAGVVA-----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            777777654     3332   23334445566679999999999999999999999999999999999887765555444


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHh
Q 016572          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQA  384 (387)
Q Consensus       329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~l  384 (387)
                      .+.....+.....   ..+++++..+.+..++++++..+.+|++.|+.||.++-++
T Consensus       224 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l  276 (291)
T PRK12874        224 VLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL  276 (291)
T ss_pred             HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            4444444433222   3456677888888899999999888888999999888765

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=7.8e-38  Score=302.72  Aligned_cols=262  Identities=17%  Similarity=0.163  Sum_probs=204.6

Q ss_pred             HHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572           97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~-  172 (387)
                      ++++++|+|++|.+++.+..+   ++++|.+++....+..++..   +++++++.+++++++|++||++|+|+|++|+| 
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            468999999999999887755   44566666532111112221   34577899999999999999999999999875 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (387)
Q Consensus       173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~  251 (387)
                       +||+|+|++|++||+.+..++.++++.+++.+|+.++.++. +++++.++||.      +||++++++++.|+..+.++
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  152 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA  152 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence             99999999999999999999999999999988987777764 56777889997      89999999999888777666


Q ss_pred             HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~  331 (387)
                      .+|+.+     +.|. ... ...+.++....+|+.+++++++++|+|+|+++|++|+|+++|+++..++. .+..+.+..
T Consensus       153 l~g~~a-----v~g~-~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~  224 (289)
T PLN02809        153 LLGWAA-----VKGS-LDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG  224 (289)
T ss_pred             HHHHHH-----HhCC-CCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence            666533     3342 111 12222455667899999999999999999999999999999999666655 456566666


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572          332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (387)
Q Consensus       332 ~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~  379 (387)
                      +...|.....+   ..|++++++.+.++++|++.+|.+|+++|.++|.
T Consensus       225 l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        225 LALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            66666654432   3556688888999999999999999999988864

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-38  Score=304.00  Aligned_cols=261  Identities=19%  Similarity=0.207  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572           96 VKRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~  172 (387)
                      +++++++|+|++||+++.+..   +++++|.++|.++.+  ++..   +++++++.+++++++|++|||+|+|+|++|+|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            456899999999999987766   477888888854433  2221   34577889999999999999999999988765


Q ss_pred             --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                        +||+|+|++|++||+.++.++.++++.+++.+|+.++.+++ .+.++.++||.      .||++.++++++|+.+|.+
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence              89999999999999999999999999999999988777764 56667889997      7999999999998888866


Q ss_pred             HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~  330 (387)
                      +..|+.+     +.|.   .+...+++.+...+|+.+++++|+++|+|+|+++|++|+|+++|++++.++.. ++.+...
T Consensus       153 ~l~g~~a-----~~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~  223 (290)
T PRK12870        153 VLISWSA-----VTGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVG  223 (290)
T ss_pred             HHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHH
Confidence            6565543     2232   23344455566788999999999999999999999999999999998877655 4444555


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHH
Q 016572          331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMF  380 (387)
Q Consensus       331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~  380 (387)
                      .+...++..+.   +..|+++..+...++.+|+..+  |.+|+++|++||..
T Consensus       224 ~l~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  272 (290)
T PRK12870        224 FLAILGVLLEL---HLPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ  272 (290)
T ss_pred             HHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence            55556655443   2356677888889999999988  87789899887753

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.8e-37  Score=299.97  Aligned_cols=265  Identities=16%  Similarity=0.160  Sum_probs=209.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl  176 (387)
                      ++++|+|++||++.......++.|.++|.++.+  ++.   .+++++++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            468999999999999988887889988854323  322   24567889999999999999999999999994  59999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (387)
Q Consensus       177 ~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~  256 (387)
                      ++|++|+++|+.+++++.+++++++..+|..+..++. ++.++.+.|+.      +||++.++++++|+..|.++..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888888887766653 45666789986      8999999999999888876666654


Q ss_pred             HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (387)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g  336 (387)
                      +     +.|. .+.....+++.+...+|+.+.+++||++|+|+|+++|++|+|+++|+|++.++....+.++++...+.+
T Consensus       149 a-----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 A-----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             H-----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3     2232 221133444455667899999999999999999999999999999999898887777777776666666


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHH-HHHHHHHh
Q 016572          337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYMFLWQA  384 (387)
Q Consensus       337 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-F~~~iw~l  384 (387)
                      .....   +..|+++.++....++++.+..|.+|+++|++ ||.+..++
T Consensus       223 ~~~~~---g~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~~l  268 (282)
T TIGR01475       223 FYVGN---GYIALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFL  268 (282)
T ss_pred             HHhhC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHH
Confidence            55443   34566677777788899999999999998886 77776554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.9e-37  Score=296.71  Aligned_cols=259  Identities=17%  Similarity=0.072  Sum_probs=203.1

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcc-cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RP  175 (387)
                      ++++|+|++||++.+.....++.|...+.. ..+.+++.   .+++.+++++++++++|++|||+|+|+|++|+|  +||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            368999999998777665555555555431 11223332   245678899999999999999999999999985  999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~  255 (387)
                      +|+|++|++||+.+++++.++++.++..+|+.++.++. ++++..+.|+.      .||+++++++++|+..+.++..|+
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~  150 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW  150 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999988888888888888888776663 45656789987      899999999999988776666665


Q ss_pred             HHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016572          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA  335 (387)
Q Consensus       256 ~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~  335 (387)
                      .+     +.|.   .+...+++.+...+|+.+++++|++||+|+|+++|+||+|+++|+|++.++...++.+.++...+.
T Consensus       151 ~a-----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~  222 (284)
T PRK12888        151 IA-----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF  222 (284)
T ss_pred             HH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence            43     2232   233445556677889999999999999999999999999999999999887766666666666666


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHH-HHH
Q 016572          336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQF-GFY  378 (387)
Q Consensus       336 g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~-~F~  378 (387)
                      +....++   +.|+++.++...++.||++.+|.+|++.|. .||
T Consensus       223 ~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        223 GLAVGFG---ALWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHhCCc---HHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            6554443   466778888999999999999999988886 655

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6e-37  Score=295.92  Aligned_cols=261  Identities=16%  Similarity=0.129  Sum_probs=205.5

Q ss_pred             HHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--
Q 016572           98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--  172 (387)
                      +++++|+|++||+++.++.+   +.++|.+++....+  ++.   ..++++++.+++++++|++||+.|+|+|++|+|  
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            56889999999998877754   55677777643222  221   245678999999999999999999999999986  


Q ss_pred             CCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572          173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (387)
Q Consensus       173 ~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l----~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g  248 (387)
                      +||+|+|++|+++|+.+++++.++++.+++.+    |+.++.+++ ++++...+||.      +||++.++++++|+..+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            99999999999999999999999998887665    556666663 55667789997      89999999999998888


Q ss_pred             HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (387)
Q Consensus       249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~  328 (387)
                      .++.+||.+     +.|. .++....+++++...+|+.++|++|+++|+|+|+++|++|+|+++|++ +......++.+.
T Consensus       153 ~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~  225 (294)
T PRK12873        153 FAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLT  225 (294)
T ss_pred             hHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHH
Confidence            777777643     3332 222223344446677899999999999999999999999999999975 445566677777


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCC--HHhHHHHHHH
Q 016572          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQFGFYMF  380 (387)
Q Consensus       329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~--~~~~~~F~~~  380 (387)
                      .+++...|....++   +.|+++.++.+.++.+|++.+|.+|  +++|.++|..
T Consensus       226 ~~ll~~~g~~~~l~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~  276 (294)
T PRK12873        226 SIFLALAAFIAQVG---FIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSN  276 (294)
T ss_pred             HHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHh
Confidence            77777778776553   4677888888899999999999988  5889776643

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-36  Score=291.94  Aligned_cols=265  Identities=17%  Similarity=0.158  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 016572           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~  173 (387)
                      +.+++++|+|++||++......+++.|.++|..+.++  +.   .+++++++.+++++++|++|||+|+|+|++|+|  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            3478999999999999998888889999998543332  21   244577899999999999999999999999986  8


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (387)
Q Consensus       174 RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~  253 (387)
                      ||+++|++|++||+.+.+.+.+.++.+++.+|+.+..+++ ++.++.++|+.      +||++.+++++.|+..+.++..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999998766666666666778888776664 46666889997      7999999999999887766666


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~  333 (387)
                      |+.+     +.|.   .+...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+....
T Consensus       152 g~~a-----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        152 AWIA-----IRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            6543     2232   2334455556667899999999999999999999999999999999998877666556665555


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HhHHH-HHHHHHH
Q 016572          334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF-DSQFG-FYMFLWQ  383 (387)
Q Consensus       334 l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~-~~~~~-F~~~iw~  383 (387)
                      +.+.....   +..|.++.++....+.++++..+.+|+ +.|++ |...+|.
T Consensus       224 ~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~  272 (291)
T PRK12886        224 ALGISAGL---GPWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI  272 (291)
T ss_pred             HHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence            55544332   345666777777777788899988884 57877 5555543

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=2.6e-36  Score=291.83  Aligned_cols=259  Identities=16%  Similarity=0.191  Sum_probs=201.5

Q ss_pred             HHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572           97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~-  172 (387)
                      ++++++|+|++|++++....   +++++|..+|.+..++  +..   +++++++.+++++++|++|||+|+|+|++++| 
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            46789999999988776554   4567788887543232  221   34567888999999999999999999998775 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (387)
Q Consensus       173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~  251 (387)
                       +||+|+|++|+++|+.+++++.++++++++.+|+.+..++ +++.++.++|+.      .||++.++++++|+..|.++
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence             8999999999999999999999999998888898777666 356667889986      79999899999888888665


Q ss_pred             HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~  331 (387)
                      .+|+.+     +.| .  .+...+++.+...+|+...++.++++|+|+|+++|++|+|+++|+|++.++. .++.+....
T Consensus       150 ~~g~~a-----~~~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~  220 (282)
T PRK12848        150 PMAFAA-----VQG-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLAL  220 (282)
T ss_pred             HHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHH
Confidence            566543     222 2  2334455556677899999999999999999999999999999999887765 344444444


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572          332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (387)
Q Consensus       332 ~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~  379 (387)
                      ..+.++....   +..|.++..+....+.+++..+|.+|+++|+++|.
T Consensus       221 ~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (282)
T PRK12848        221 LAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACFKAFL  265 (282)
T ss_pred             HHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4445544333   34566778888899999999999999988877663

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-36  Score=289.10  Aligned_cols=265  Identities=15%  Similarity=0.173  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572           96 VKRKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~  172 (387)
                      +++++++|+|++||+++.+.   .+++++|.++|.... ..++.   ..++++++++++++++|++|||+|+|+|++|+|
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            34679999999999988764   467788888885432 12332   245678899999999999999999999998775


Q ss_pred             --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                        +||+++|++|+++++.+++++.++++.+++.+|+..+.++ +++.++.+.||.      .||++.+++++.|+.++.+
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence              8999999999999999999999999998888898777776 456777889997      8999989999988877755


Q ss_pred             HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~  330 (387)
                      +..++.+     +.| .  .+...+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++........+.
T Consensus       152 ~l~~~~a-----~~g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        152 ILMAFAA-----VQN-Q--LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHH-----HcC-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            5555433     223 2  2334555566677899999999999999999999999999999999998877655444333


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH-HHHHH
Q 016572          331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQ  383 (387)
Q Consensus       331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~-~~iw~  383 (387)
                      . .+.++..+.  ..+.| .++++...++++++..+|.+|+++|+++| ..++.
T Consensus       224 ~-~~~~~~~~~--~~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  273 (285)
T PRK12847        224 W-LILGIISSL--HNIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYV  273 (285)
T ss_pred             H-HHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHH
Confidence            3 333333332  12233 35555667888999999998887776554 44443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7e-36  Score=292.39  Aligned_cols=264  Identities=19%  Similarity=0.138  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 016572           94 EVVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID  167 (387)
Q Consensus        94 ~~~~~~l~~y~~L~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D  167 (387)
                      ..+++++++|+|++   ||+......+++++|.++|....   ...++.   .+++++++.+++++++|++|||+|+|+|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD  100 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID  100 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33778999999999   77777778888999999985431   123322   2456788999999999999999999999


Q ss_pred             ccCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHH
Q 016572          168 KINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI  245 (387)
Q Consensus       168 ~~n~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~  245 (387)
                      ++++|  +||+++|++|+++++.++.++.++|+.+.+..|++.+.++ ++++++.++|+.      +||++.++++..|+
T Consensus       101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl  173 (314)
T PRK12878        101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGL  173 (314)
T ss_pred             cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHH
Confidence            98875  8999999999999999999999999998888888777666 467777899987      89999899988887


Q ss_pred             HHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHH
Q 016572          246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM  325 (387)
Q Consensus       246 ~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~  325 (387)
                      ..+.++.+|+++     ..|.   .+...+++++...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++.. ++
T Consensus       174 ~~~~~~l~g~~a-----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~-~~  244 (314)
T PRK12878        174 AFSWGALMGWAA-----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL-FY  244 (314)
T ss_pred             HHHHHHHHHHHH-----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH-HH
Confidence            766666666543     2232   23334455556678999999999999999999999999999999999987764 33


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572          326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (387)
Q Consensus       326 ~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~  379 (387)
                      .+......+.+.....   .+.|+++.......+.+|+.++|.+|+++|+++|.
T Consensus       245 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        245 GLAVLLMGLAFWLAGV---PLLALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence            3433333334333333   23555666666777899999999888888877664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-35  Score=287.27  Aligned_cols=269  Identities=15%  Similarity=0.153  Sum_probs=197.9

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcc----cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQ----SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~----~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~-  172 (387)
                      ++++.|.|++|.++-+...-.++.|+.+|..    ..+-+++.-+..+++..++++++++++|++||++|+|+|++|+| 
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            4689999999995544443334678888841    01101111122345678999999999999999999999999996 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (387)
Q Consensus       173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~  251 (387)
                       +||+|+|++|++||+.+.+++.++++++++.+|+.++.++. +++++.++||.      +||+++++|+++|+..+..+
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~  154 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYLAI  154 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHHHH
Confidence             99999999999999999988888888888889998887774 56667789997      89999999999988777655


Q ss_pred             HHHHHHHhhhHhhCCCCCChH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572          252 QIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~~~~~--~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~  329 (387)
                      ..++.+     +.++..++..  ..++..+...+|..++|++|++||+|+|++.|+||+|+++|++++.++...++.+..
T Consensus       155 l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~  229 (300)
T PRK12876        155 LMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA  229 (300)
T ss_pred             HHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence            555543     3333211100  112223344567779999999999999999999999999999988777777777777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHhHHHHHHH
Q 016572          330 GGAVVAGATSTLMISKLVTIIGHIILALMM--WLRSRKVDLDNFDSQFGFYMF  380 (387)
Q Consensus       330 ~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l--~~~~~~~d~~~~~~~~~F~~~  380 (387)
                      +...+.|.....++  ++|..+.++.+..+  .+|.+.+|.|+++.|..||..
T Consensus       230 ~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  280 (300)
T PRK12876        230 IAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG  280 (300)
T ss_pred             HHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence            66667776655433  34555665444433  445477888889999998865

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.8e-35  Score=285.60  Aligned_cols=263  Identities=17%  Similarity=0.168  Sum_probs=198.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s  178 (387)
                      ++++|+|++||+++....+++++|.++|.+..+  ++.   .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--chH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            478999999999999999999999988854222  222   245677899999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (387)
Q Consensus       179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~  258 (387)
                      |++|+++++.++.++.++++.+++.+|+.++.+++ ++.++.++|+.     ++||++.++|+++|..+|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999889988776664 56667889995     489999899999999888666666443 


Q ss_pred             hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (387)
Q Consensus       259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~  338 (387)
                          +.+   . . ..+++.....+|+.+++++||++|+|+|+++|++|+|+++|+|++.++......+......+ ...
T Consensus       150 ----~~~---~-~-~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~-~~~  219 (279)
T PRK09573        150 ----VFN---V-L-RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPL-PYF  219 (279)
T ss_pred             ----Hcc---c-h-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                222   1 1 22333445567888999999999999999999999999999999988765554444333322 221


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCCCHHhHHHH-HHHHHHhc
Q 016572          339 STLMISKLVTIIGHIILALMMWLR-SRKVDLDNFDSQFGF-YMFLWQAS  385 (387)
Q Consensus       339 ~~~~~~~~~~~~~~~i~~~~l~~~-~~~~d~~~~~~~~~F-~~~iw~lf  385 (387)
                      .  ...++.|+++.++....+.++ .+..+.+|+++|+.. ..+.+.+|
T Consensus       220 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~  266 (279)
T PRK09573        220 L--GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMI  266 (279)
T ss_pred             H--HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            1  123456666666666666666 444466677766554 55555543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.3e-35  Score=282.15  Aligned_cols=256  Identities=19%  Similarity=0.276  Sum_probs=199.0

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~  177 (387)
                      +++++|++++||+++....+++++|.++|.+..   ++.   .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~---~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGL---PLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC---chH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            578999999999999999999999998885432   211   24557789999999999999999999999999999999


Q ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHH
Q 016572          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI  257 (387)
Q Consensus       178 sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~  257 (387)
                      +|++|+++++.+++++.++++++++.+|+..+.++ +++.++++.||.     ++||+++++++++++.+|.++..|+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888898776665 456777899997     479999889999998888665555432


Q ss_pred             HhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 016572          258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGA  337 (387)
Q Consensus       258 ~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~  337 (387)
                            .+..   +...+++.....+|+.+.++++|++|+|+|+++|+||+|+++|+|++.++...++.+.++...+...
T Consensus       150 ------~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        150 ------VGEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             ------hCCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1221   1133444455668888999999999999999999999999999999988876666665554433332


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHhHHHH
Q 016572          338 TSTLMISKLVTIIGHIILALMMWLRS-RKVDLDNFDSQFGF  377 (387)
Q Consensus       338 ~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~d~~~~~~~~~F  377 (387)
                      ..   +..+.|.+...+....+.+++ +..+.+|+++++.+
T Consensus       221 ~~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        221 FG---IFNILYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HH---HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            22   223456666666667777775 56677777777776

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=8e-35  Score=282.40  Aligned_cols=265  Identities=25%  Similarity=0.307  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572           96 VKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~  172 (387)
                      .+++++.+.+++|+++++.+..   +..+|..++....++     +...++++++++++++++|++||++|+|+|++|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            4566677777777776666644   555666666422221     23356688899999999999999999999999999


Q ss_pred             --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                        +||+|+|++|+++|+.+.+++.++++.+++.+|++++.+. +++.++.+.|+.      +||.++++++++|..+|..
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYPF------LKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence              9999999999999999999999999999999998876666 467888999965      9999999999999988866


Q ss_pred             HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~  330 (387)
                      +..|+.+     +.|.   .+...++++++..+|+.+++++||++|+|+|++.|++|+|+.+|++++..++.... ...+
T Consensus       154 ~~~g~~a-----~~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~  224 (289)
T COG0382         154 ALAGAAA-----VGGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA  224 (289)
T ss_pred             HHHHHHH-----HhCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence            6666543     2221   23345566677789999999999999999999999999999999999988877655 4444


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH
Q 016572          331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ  383 (387)
Q Consensus       331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~  383 (387)
                      .....+.....  ....+.+++.+....+++|+..+|.++++.|+.+|..-..
T Consensus       225 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (289)
T COG0382         225 LLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLL  275 (289)
T ss_pred             HHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence            44444444332  2246788888889999999999999999999998876543

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.5e-35  Score=282.35  Aligned_cols=259  Identities=20%  Similarity=0.193  Sum_probs=192.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s  178 (387)
                      ++++|+|++||++...+.+++++|.++|.+..+  +..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            478999999999999999999999999854322  111   135678899999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (387)
Q Consensus       179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~  258 (387)
                      |++|++|++.++.++.++++++++.+|+..+.++ +++.++.+.|+.     |+||++.++|++++...|.++.+|+.. 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999998998776666 356667889986     589999889999987777544444322 


Q ss_pred             hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (387)
Q Consensus       259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~  338 (387)
                           .+..  .....+.+.+..++++++.+++||++|+|+|+++|+||+|+++|+|++.++....+.+...... .++.
T Consensus       151 -----~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~-~~~~  222 (276)
T PRK12882        151 -----VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP-LPYL  222 (276)
T ss_pred             -----hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence                 2211  1112233344556778899999999999999999999999999999998876655544333222 2221


Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHHHHHHHcCCCCHHhHHHHHH
Q 016572          339 STLMISKLVTIIGHIILA-LMMWLRSRKVDLDNFDSQFGFYM  379 (387)
Q Consensus       339 ~~~~~~~~~~~~~~~i~~-~~l~~~~~~~d~~~~~~~~~F~~  379 (387)
                      .  ...+..|++...+.. ..+..+.+..|.+|++.|+++|.
T Consensus       223 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  262 (276)
T PRK12882        223 L--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK  262 (276)
T ss_pred             H--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1  112234555544444 44445677778888888876443

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.7e-34  Score=287.76  Aligned_cols=268  Identities=22%  Similarity=0.210  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 016572           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (387)
Q Consensus        95 ~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~  171 (387)
                      ..++++++|++++||+++....++++.|++.. +   .+++..   ...++.++++..++++++|++|||+|+|+|++|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~  155 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE  155 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence            35578999999999999999999999998853 2   222221   1123556778889999999999999999999999


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHH
Q 016572          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (387)
Q Consensus       172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l-------~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~  244 (387)
                      |+||+++|++++++++.+..++.++++.+++.+       +++.+.++ +++++++++||.  ||+++||++++|++.+|
T Consensus       156 ~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG  232 (375)
T PLN00012        156 PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYALG  232 (375)
T ss_pred             CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHHH
Confidence            999999999999999997777666666665544       33344444 457778999999  99999999999999887


Q ss_pred             HHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (387)
Q Consensus       245 ~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (387)
                      ..++.   ++++..  ..+.|.   ++...+++.++.++|+.+++++||++|+|+|+++|++|+|+++|++++.+++..+
T Consensus       233 ~~~~~---lp~~~g--~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~  304 (375)
T PLN00012        233 ASYIS---LPWWAG--QALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGS  304 (375)
T ss_pred             HHHHH---HHHHHH--HHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHH
Confidence            66552   222221  123342   3334445555667889999999999999999999999999999999998887644


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 016572          325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFL  381 (387)
Q Consensus       325 ~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~i  381 (387)
                      +.+..+.  +.++....  ...+|......+...+.++..+...+||.++...|...
T Consensus       305 l~l~~l~--~~~~l~~~--~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~  357 (375)
T PLN00012        305 IDITQLS--VAGYLLAI--GKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQAS  357 (375)
T ss_pred             HHHHHHH--HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4443322  22322221  12222222222333333333334445877777766544

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=9.4e-35  Score=280.78  Aligned_cols=262  Identities=18%  Similarity=0.168  Sum_probs=196.8

Q ss_pred             HHHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CC
Q 016572          100 LNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL  174 (387)
Q Consensus       100 l~~y~~L~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~R  174 (387)
                      +++|.|++|++++...   .++.++|..+|....+..++..   .++++++.+++++++|++|||+|+|+|++|+|  +|
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence            3679999998887665   4466788888754211112221   34567888999999999999999999998765  89


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g  254 (387)
                      |+|+|++|++|++.++.++.++++.+++.+|+.+..++ ++++++.+.||.      +||++.+++++.|+..+.++..|
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g  150 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG  150 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888998877776 467777899996      89999999999988877666666


Q ss_pred             HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (387)
Q Consensus       255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l  334 (387)
                      +++     +.|.   .+...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+. ..++.++.....+
T Consensus       151 ~~a-----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~  221 (281)
T TIGR01474       151 WAA-----VTGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWL-GGLYALMILLLAL  221 (281)
T ss_pred             HHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHH
Confidence            543     2332   233344445566789999999999999999999999999999999886544 3344444444444


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH-HHHHH
Q 016572          335 AGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQ  383 (387)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~-~~iw~  383 (387)
                      .+.....   +..|.++..+....+.+++..+|.+|+++|+++| .++++
T Consensus       222 ~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~  268 (281)
T TIGR01474       222 AGLIAGL---GPVYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYV  268 (281)
T ss_pred             HHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHH
Confidence            4433332   3456677778888899999999888877766554 44444

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.4e-34  Score=283.57  Aligned_cols=224  Identities=21%  Similarity=0.195  Sum_probs=175.1

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP  175 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RP  175 (387)
                      ++++++|++++||+++..++++++.|++.+..  .++... .+..++.++++..++++++|++|||+|+|+|++|+|+||
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            47789999999999999998888878776532  122211 111123456778889999999999999999999999999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH-HHHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIP  254 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~-~~~~g  254 (387)
                      +++|++|+++++.++.++.++++++++.+|++.+.++ +++++++++||.  ||+++||+++++|+++|+.+|. ++..+
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g  178 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG  178 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888997776665 457777899999  8999999998999999887763 32333


Q ss_pred             HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016572          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA  332 (387)
Q Consensus       255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~  332 (387)
                      +..     +.++  ..+...++..+...+++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++++..
T Consensus       179 ~~~-----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        179 AAA-----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHH-----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            221     2111  2233444445555678888999999999999999999999999999999988877766666554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=4.2e-34  Score=281.13  Aligned_cols=265  Identities=17%  Similarity=0.200  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 016572           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~R  174 (387)
                      ..+++|+|+|++||+++. ..+++++|.++|.+.. +..... .+.+...++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            446799999999999888 6667778888875321 222211 1112223444456667899999999999999999999


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHhcH-------HHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~-------~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~  247 (387)
                      |+++|++|+++++.+.+++.++++++++.++.       +.++...+++++++++||.  ||+++||+++.++..+|+.+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence            99999999999999999999988887776542       2222322456778899999  99999999888888888777


Q ss_pred             HHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (387)
Q Consensus       248 g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l  327 (387)
                      +....+++.     ...|.   .+...+++.+...+|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus       164 ~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            743333322     23342   3334445556667899999999999999999999999999999999998887655545


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHH
Q 016572          328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF  377 (387)
Q Consensus       328 ~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F  377 (387)
                      ..+..+..++....+   ..+.+..++.+.++++|.+..  +||+.-.+|
T Consensus       236 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l~--r~p~~~~~~  280 (331)
T PRK12392        236 VFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQLY--RDPKGGISF  280 (331)
T ss_pred             HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHH--hChhhhhHH
Confidence            665555666555543   234455566667777777654  234444433

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=8.6e-34  Score=274.36  Aligned_cols=221  Identities=19%  Similarity=0.155  Sum_probs=173.3

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccC
Q 016572          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (387)
Q Consensus       101 ~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG  179 (387)
                      ++|++++||+++....++++.|.++|.....+ +++..  .++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999887322122 33321  2334667889999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572          180 ELSMGTGIAICAGSALLSLALAFLSGSPA-VLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (387)
Q Consensus       180 ~ls~~~al~~~~~l~~l~l~l~~~l~~~~-l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~  258 (387)
                      ++|+++++.+.+++.++++++++.++.+. ..++ +++.+++++||.  ||+|+||+++++++.+++.++.....+.+  
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~--  153 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH--  153 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH--
Confidence            99999999999999999999888887665 3344 457778999999  99999999989999988766522111111  


Q ss_pred             hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (387)
Q Consensus       259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l  334 (387)
                         ...+.   .++..++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++++..+.
T Consensus       154 ---~~~~~---~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       154 ---AIFAP---LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             ---HHhCC---CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence               12221   23334444455667888899999999999999999999999999999999887777776655543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=2.1e-33  Score=273.30  Aligned_cols=264  Identities=14%  Similarity=0.059  Sum_probs=192.2

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP  175 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RP  175 (387)
                      +++++|+|++||++.+...+++++|.++|.+.  .+++..   +++++++.+++++++|++|||+|+|+|++|+  |+||
T Consensus         8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            57999999999999999999999999998543  233322   4567889999999999999999999999988  5999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH-HHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAW-GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQ  252 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~-~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~  252 (387)
                      +++|++|++||+.++.++.++++++++. .|+.+..++. ++ +...++||.     ++||+++ ++..++...| .++.
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~-~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l  155 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTL-AGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL  155 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence            9999999999999999999999888755 5666655543 33 334668986     4899995 5555554444 5555


Q ss_pred             HHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016572          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA  332 (387)
Q Consensus       253 ~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~  332 (387)
                      +|+++     +.|.   .+...+++.+...+|+...+..++++|+|||+++|+||+|+++|++++.++......+ .+..
T Consensus       156 ~g~~a-----~~g~---~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~-~~~~  226 (296)
T PRK04375        156 IGWAA-----VTGS---LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVL-LVAV  226 (296)
T ss_pred             HHHHH-----hCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHH-HHHH
Confidence            66543     2232   3334555566777899999999999999999999999999999999887765443333 2222


Q ss_pred             HHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHhH-HHHHHHHHHh
Q 016572          333 VVAGATSTLMISKLVTII-GHIILALMMWLRSRKVDLDNFDSQ-FGFYMFLWQA  384 (387)
Q Consensus       333 ~l~g~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~~d~~~~~~~-~~F~~~iw~l  384 (387)
                      ........  ..++.|.+ +.+..+..+.++++..+.+|++.| +.|+...|++
T Consensus       227 ~~~~~~~~--~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        227 SLLPVLLG--MAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            22222211  11234444 455566667788888888777655 6788888875

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2.5e-33  Score=270.64  Aligned_cols=264  Identities=16%  Similarity=0.107  Sum_probs=188.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl  176 (387)
                      ++++|+|++||++.....+++++|.++|.+..  .++.   .+++.+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            47899999999998889899999999885432  2322   13457788899999999999999999999998  49999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHHHH
Q 016572          177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP  254 (387)
Q Consensus       177 ~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~g  254 (387)
                      |+|++|+++|+.++.++.++++.+++. +|+.+.....+..++..++||.     ++||+++.+++ ++...| .++..|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~-v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIV-IGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHH-HHHHHHHHHHHHH
Confidence            999999999999999999999988877 7876543332345567789996     48999976544 444445 554444


Q ss_pred             HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (387)
Q Consensus       255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l  334 (387)
                      +.+     ..|.   .+...+++.+...+|+.+.....+++|+|||+++|+||+|+++|++++.+....+..+.......
T Consensus       150 ~~a-----~~g~---~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~  221 (279)
T PRK12869        150 YAS-----GTGS---LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL  221 (279)
T ss_pred             HHH-----HhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            432     2232   23344455556667888877777889999999999999999999998887765554443333333


Q ss_pred             HHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHcCCCCHHhH-HHHHHHHHHhc
Q 016572          335 AGATSTLMISKLVTIIGHIIL-ALMMWLRSRKVDLDNFDSQ-FGFYMFLWQAS  385 (387)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~-~~F~~~iw~lf  385 (387)
                      .+. ..   .+..|.++..+. +..+.++.+..+.+|++.| +.|..++|++.
T Consensus       222 ~~~-~~---~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        222 LYL-YY---IGLIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HHH-hh---ccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            322 12   234555555443 3445565666666666656 55888999873

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.5e-35  Score=272.90  Aligned_cols=271  Identities=15%  Similarity=0.140  Sum_probs=210.0

Q ss_pred             chhhHHHHHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 016572           89 APSFLEVVKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE  165 (387)
Q Consensus        89 ~~~~~~~~~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~  165 (387)
                      .+++.+.-++++++|.|++|.++++++++   +..++.++|... + ..+.. --+-++-.+.++|++++|++||..|+|
T Consensus        53 sss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g-~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkd  129 (353)
T KOG1381|consen   53 SSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G-LLPSI-KMLALFGVGALLMRGAGCTINDLWDKD  129 (353)
T ss_pred             chhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C-ccchh-HHHHHhcccHHHhccCCceehhhhhhh
Confidence            34555555677999999999999999866   556788777532 1 11111 113346688999999999999999999


Q ss_pred             ccccCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHH
Q 016572          166 IDKINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL  243 (387)
Q Consensus       166 ~D~~n~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i  243 (387)
                      +|++++|  .||+++|++|+++|+.+..+.+.+|+.+..++|+.+..++ ..++.+.+.|+.      +||+++++++++
T Consensus       130 lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vL  202 (353)
T KOG1381|consen  130 LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVL  202 (353)
T ss_pred             hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHH
Confidence            9999987  8999999999999999999999999999999999887776 457777889998      999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHH
Q 016572          244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVN  323 (387)
Q Consensus       244 ~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~  323 (387)
                      |..+    ++|...+ +.++.|. . .+...+-+++--..|++.+|++|++||.++|.++|+++.+.++|+++..++.. 
T Consensus       203 gltf----nwGAllG-w~A~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-  274 (353)
T KOG1381|consen  203 GLTF----NWGALLG-WCALKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-  274 (353)
T ss_pred             hhhc----chhhhhc-chhhcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-
Confidence            7543    3443331 1233332 1 12122333454567999999999999999999999999999999998888754 


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 016572          324 MMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMF  380 (387)
Q Consensus       324 l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~  380 (387)
                      +-......+..+|+.+.+.|   .|++++.+.+.++.+|..++|+||+++|+++|-+
T Consensus       275 f~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s  328 (353)
T KOG1381|consen  275 FGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKS  328 (353)
T ss_pred             hhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence            33344455667777777654   5666788899999999999999999999998753

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.8e-33  Score=270.10  Aligned_cols=268  Identities=15%  Similarity=0.158  Sum_probs=201.5

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----P  172 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~-----~  172 (387)
                      ++++.|++.+||+++..+..++++|.++|+...+++++..   ++++++++++++.++|++|||+|+|.|..++     +
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            4689999999999999999999999999975445666533   4667899999999999999999955544443     6


Q ss_pred             CCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572          173 YLPLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (387)
Q Consensus       173 ~RPl~sG~ls~~~al~~~~~l~~l~l~l~~----~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g  248 (387)
                      +||+++|++|+++++.++.++..+++.++.    ..+...+.++ +++.++++.||.  ||+++|+++ +|++.+++.+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence            799999999999999998887666654432    2354445555 467889999998  999999887 79999999999


Q ss_pred             HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (387)
Q Consensus       249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~  328 (387)
                      ....+|.+..     .++.  .+...+.......+++.....+|+++|+|+|++.|+||+|+++|+|++ ++...++..+
T Consensus       155 ~~~vlg~~~~-----~~~~--~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        155 HMLVMGLIYV-----WLGN--LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHHH-----HhCc--ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            6666665432     2222  233344445556677788899999999999999999999999999999 6665666667


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 016572          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMF  380 (387)
Q Consensus       329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~  380 (387)
                      |+..+........++..+.+++++......+.+++++.|.++...|.+++..
T Consensus       227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            7665554444334444556666666666667777777787777778777765

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=3.2e-32  Score=266.00  Aligned_cols=223  Identities=22%  Similarity=0.249  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 016572           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (387)
Q Consensus        95 ~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~  171 (387)
                      ..++++++|++++||+++....++++.|...+.    ++++..   ...++.+++++.++++++|++|||+|+|.|++|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            345678999999999999999999888988642    222211   1113445677899999999999999999999999


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------HHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHH
Q 016572          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (387)
Q Consensus       172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~-------~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~  244 (387)
                      |+||+++|++|+++++.+++++.++++++++.+.       ++.+.++ +++++++++||.  ||+++||++++|++.++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence            9999999999999999999888888887766553       3344444 467778999999  99999999989998887


Q ss_pred             HHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (387)
Q Consensus       245 ~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (387)
                      ..++..+..+.+     .+.|   +++...++..+..++|+.++++.||++|+|+|+++|+||+|+++|+|++.+++..+
T Consensus       164 ~~~~~~~~~~~~-----a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l  235 (306)
T TIGR02056       164 ASYIALPWWAGH-----ALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHH-----HHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence            666532222211     1233   23334445555667789999999999999999999999999999999999988766


Q ss_pred             HHHHHHHH
Q 016572          325 MLLGYGGA  332 (387)
Q Consensus       325 ~~l~~~~~  332 (387)
                      +..++...
T Consensus       236 ~~~~~~~~  243 (306)
T TIGR02056       236 IDIFQGLI  243 (306)
T ss_pred             HHHHHHHH
Confidence            66655444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=4.2e-32  Score=262.23  Aligned_cols=264  Identities=15%  Similarity=0.094  Sum_probs=190.0

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccc
Q 016572          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS  178 (387)
Q Consensus       101 ~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl~s  178 (387)
                      |+|+|++||+++....++++.|.++|.+.. +.++..   +++++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999985432 133322   4557789999999999999999999999987  4999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHH-hhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572          179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLT-GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (387)
Q Consensus       179 G~ls~~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l-~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~  256 (387)
                      |++|+++++.+++++.++|+.+ .+..|+....++. ++.++ .++||.     .+||++++++++.++..+.++..|+.
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999884 4457877665553 45543 789995     27999977666555433345445543


Q ss_pred             HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (387)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g  336 (387)
                      +     ..| .  .+...+++.....+|+...+...+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus       151 a-----~~g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       151 A-----VTG-S--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             H-----hcC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2     123 2  2334444555667888888888889999999999999999999999887765443333222222222


Q ss_pred             HHhhhhhHHHHHH-HHHHHHHHHHHHHHHHcCCC-CHH-hHHHHHHHHHHhc
Q 016572          337 ATSTLMISKLVTI-IGHIILALMMWLRSRKVDLD-NFD-SQFGFYMFLWQAS  385 (387)
Q Consensus       337 ~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~-~~~-~~~~F~~~iw~lf  385 (387)
                      ....   .++.|+ .+..+....+.++++..|.+ |++ ..+.|+.+.+++.
T Consensus       223 ~~~~---~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~  271 (280)
T TIGR01473       223 FLGG---TGWLYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA  271 (280)
T ss_pred             HHhc---ccHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            2222   233444 56666777788888888776 554 5678888888763

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.5e-31  Score=260.92  Aligned_cols=268  Identities=17%  Similarity=0.170  Sum_probs=191.7

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CC
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL  174 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~R  174 (387)
                      ++++++|++++||+.+....++++.|.++|..+  +.++..   .+.++++.++.++++|++|||+|+|+|++++|  +|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            367899999999999999999999999998433  234322   34566889999999999999999999998764  89


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~-~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~  253 (387)
                      |+|+|++|+++|+.+++++.++|+.++ +..|..+..++.+..++..++||.     ++||++++++++.++..+.++.+
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~  159 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV  159 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence            999999999999999999999998865 445766654543223335678995     38999999999888776777777


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~  333 (387)
                      |+.+.     .| .  .+...++++..+.+|+...+...+++|+|||+++|++|+|+++|++++.+... ++.+..+...
T Consensus       160 G~~a~-----~g-~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~-~~~~~~~~~s  230 (306)
T PRK13362        160 GYCAV-----TG-Q--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV-LYILVFALVT  230 (306)
T ss_pred             HHHHH-----cC-C--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH-HHHHHHHHHH
Confidence            76542     23 2  23345555667788999999999999999999999999999999998876433 2333322222


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc---CCCC-HHhHHHHHHHHHHhc
Q 016572          334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKV---DLDN-FDSQFGFYMFLWQAS  385 (387)
Q Consensus       334 l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~---d~~~-~~~~~~F~~~iw~lf  385 (387)
                      ......  +..++.|.+...+....+.+...+.   +.+| +.+.+.|+.++|+|+
T Consensus       231 ~l~~~~--g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~  284 (306)
T PRK13362        231 ALLPLA--GYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTIT  284 (306)
T ss_pred             HHHHHH--ccccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            222221  1223445544444444444333322   2233 346788999999985

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=1.4e-31  Score=256.95  Aligned_cols=257  Identities=18%  Similarity=0.161  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 016572           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY  173 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~--~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~  173 (387)
                      +...++.+++++||.+|+.+..++++|...+.+   .+++  ..   ++++++.....+.+.|.+|||+|+|+|++|+|+
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence            345678899999999999999999999977743   2343  22   344566677889999999999999999999999


Q ss_pred             CccccCccCHHHHHHHHHHHHHH----HHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH
Q 016572          174 LPLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (387)
Q Consensus       174 RPl~sG~ls~~~al~~~~~l~~l----~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~  249 (387)
                      ||+++|++|+++++.+...+.++    ++.+++.+|+..+.+. +++.++++.||.  ||+|+|+++++++++. ..+|.
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~  157 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL  157 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH
Confidence            99999999999998865544433    4556777787766665 467788999999  9999999999988775 34454


Q ss_pred             HHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (387)
Q Consensus       250 ~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~  329 (387)
                      +...+      ..+.|..   ..+..  .....+|+.+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.
T Consensus       158 p~~~~------~~~~g~~---~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~  226 (292)
T PRK13595        158 PLALP------ALALGAP---VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG  226 (292)
T ss_pred             HHHHH------HHHcCCc---chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence            33322      1233421   11222  2344678899999999999999999999999999999999999887766655


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH
Q 016572          330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ  383 (387)
Q Consensus       330 ~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~  383 (387)
                      +.+....  .+..   +.    +.+....+..+.+ .|.+-++.-+.|-.|||.
T Consensus       227 ~~~~~~~--~~~~---~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  270 (292)
T PRK13595        227 ALLWPVS--RLTA---LA----LWLICGGMALALW-RRPTPETAHRLYPLSIVT  270 (292)
T ss_pred             HHHHHhc--chHH---HH----HHHHHHHHHHHHh-cCCCHHHHhccchHHHHH
Confidence            4433322  1211   11    1111122222333 677778888999999984

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=2.1e-31  Score=257.01  Aligned_cols=205  Identities=22%  Similarity=0.257  Sum_probs=161.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s  178 (387)
                      ++++|+|++||+++....++.+.|.+++.+..++  +..   .++++++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3689999999999999988888999887543222  111   34466788889999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (387)
Q Consensus       179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~  258 (387)
                      |++++++++.++.++.++|+.+++.+|++.+.+++ ++.+++++|+.     ++|++++++|+++|..+|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999988888987776663 56677899997     478888889999998888444444332 


Q ss_pred             hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (387)
Q Consensus       259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (387)
                          + +.   .+...+.. ...+++.++.++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus       150 ----~-~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        150 ----V-GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ----h-cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                1 21   12222221 2234566788899999999999999999999999999988875543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=5.1e-31  Score=256.17  Aligned_cols=229  Identities=17%  Similarity=0.156  Sum_probs=177.8

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccccc--CCCCC
Q 016572           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKI--NKPYL  174 (387)
Q Consensus        99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~--~~D~~--n~~~R  174 (387)
                      .+++|++++||+++..+.+++++|.++|... ..+++..   ++++++++++++.++|.+|||+|+  |.|+.  ++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3688999999999999999999999998532 3345432   456788999999999999999998  56754  56799


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHH----hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~----l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                      |+++|++|+++++.++.++.+++++++..    .+.+.+.++ +++.++++.||.  ||+++|+++ ++|+.+++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            99999999999998888777766555443    355444444 457778899999  898899887 7999999888855


Q ss_pred             HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~  330 (387)
                      ...+.+.     +..+  ..+...++..++..+|+..++++||++|+|+|+++|+||+|+++|+++++++...++.++|+
T Consensus       154 ~~~~~~~-----~~~~--~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        154 IVLGTYY-----LQAG--TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            4444332     1111  23344555566777889999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHhhhh
Q 016572          331 GAVVAGATSTLM  342 (387)
Q Consensus       331 ~~~l~g~~~~~~  342 (387)
                      ..+........+
T Consensus       227 ~~~~~~~~~~~~  238 (293)
T PRK06080        227 CIVLLALLGLAS  238 (293)
T ss_pred             HHHHHHHHhhhh
Confidence            776655443333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=4.3e-30  Score=249.64  Aligned_cols=259  Identities=17%  Similarity=0.084  Sum_probs=176.3

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN-------  170 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n-------  170 (387)
                      +++++|++++||+++.....++.+|.++|....+.+++..   +++.++++.++..++|++|||+|+|.|++|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            5689999999999888887777788888732112234322   222345556666778999999999999865       


Q ss_pred             --C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHhhhccCCCCcccccccCCch--h
Q 016572          171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMA--P  240 (387)
Q Consensus       171 --~--~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~----~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~--~  240 (387)
                        |  ++||+++|++|+++++.+.+++.++|++++..++.    ..+.++ +.+.++++.|+.      .||.+.++  .
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence              3  48999999999999999999999999888766543    222222 345567788886      35543232  3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHH
Q 016572          241 FTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPL  320 (387)
Q Consensus       241 l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l  320 (387)
                      ++.++..+.++..| +.     ..|.   .+...++..++..+|+.+++++||++|+|||+++|+||+|+++|++++.+.
T Consensus       153 l~G~~~~~~~~~~g-~~-----~~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~  223 (297)
T PRK12871        153 LLGRTDFTLFPAAG-YL-----CYGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW  223 (297)
T ss_pred             HHHHHHHHHHHHHH-HH-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence            33333334333333 21     2332   233444555667789999999999999999999999999999999988766


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572          321 CVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (387)
Q Consensus       321 ~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~  379 (387)
                      ...+..+....  ..+.....++  ..+....++.+.++.+|.+..+.+|++.|.+-|.
T Consensus       224 i~~~~~l~~l~--~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  278 (297)
T PRK12871        224 VTGFTALHFLA--AIFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP  278 (297)
T ss_pred             HHHHHHHHHHH--HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            54444343322  2233333322  2344444667778899999999999999966554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=1.7e-29  Score=247.59  Aligned_cols=225  Identities=12%  Similarity=0.032  Sum_probs=175.1

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCc
Q 016572          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP  175 (387)
Q Consensus       100 l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~----~~RP  175 (387)
                      ++.|++++||++...+.++++.|.++|....+++++..   ++++++++++++.++|++|||+|++.|+.++    ++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999999864434566533   4567888899999999999999987665554    5799


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~----l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~  251 (387)
                      +++|.+++++++..+.++.+++++    +.+..|+..+.++ +++++.++.||.  ||+++||++ +||+.+++.+|..+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988877777666    4555675555555 578889999999  999999999 89999999999555


Q ss_pred             HHHHHHHhhhHhhCCCCCChHHH--------------------HHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhh
Q 016572          252 QIPYFIHSQTYLLGKPFEVTGPF--------------------VFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVL  311 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~~~~~~~--------------------~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~  311 (387)
                      ..|.+..     ..+.  ++...                    ++..+...+.+...++.||++|+|+|+++|+||+|++
T Consensus       156 v~g~~yv-----~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~  228 (317)
T PRK13387        156 FLLAVYI-----NTNT--ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY  228 (317)
T ss_pred             HHHHHHH-----hcCC--CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee
Confidence            5554331     1111  11111                    1133444566777799999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572          312 LGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (387)
Q Consensus       312 lG~~~a~~l~~~l~~l~~~~~~l~g~~  338 (387)
                      +|+|++.++...++.++|+..+.....
T Consensus       229 lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        229 IGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             EcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888776554433

>PLN02776 prenyltransferase

Probab=99.96  E-value=8.7e-28  Score=235.62  Aligned_cols=256  Identities=14%  Similarity=0.057  Sum_probs=185.3

Q ss_pred             hhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCccccCccCH
Q 016572          106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM  183 (387)
Q Consensus       106 L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RPl~sG~ls~  183 (387)
                      ++||+......++.+.|+++|.+..+  ++.   .+++++++++++++++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            57898888888999999999854323  222   245577899999999999999999999999886  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHH-hhhccCCCCcccccccCCchhHHHHHHHH-HHHHHHHHHHhh
Q 016572          184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLT-GAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQ  260 (387)
Q Consensus       184 ~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l-~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~g~~~~~~  260 (387)
                      ++|+.+++++.++|+.+ ++.+|+.+..++. +++++ ..+||.      +||++++. .++|...| .++.+||.+   
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~-~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A---  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGA-GNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA---  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH---
Confidence            99999999999988854 5668888777764 44433 568996      89999764 68888878 677777654   


Q ss_pred             hHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHH
Q 016572          261 TYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG--KEKVLPLCVNMMLLGYGGAVVAGAT  338 (387)
Q Consensus       261 ~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG--~~~a~~l~~~l~~l~~~~~~l~g~~  338 (387)
                        +.|.   ++...+++++.+.+|+........++|+|||+++|++++|+.-+  .++++.+....+.+..+.++..+..
T Consensus       145 --vtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g  219 (341)
T PLN02776        145 --ASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG  219 (341)
T ss_pred             --HcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3332   23345556667788998878888888999999999999999763  4555444332222222222221111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHhHHHHHHHHHHhc
Q 016572          339 STLMISKLVTIIGHIILALMMWLRSRKVDLDN-FDSQFGFYMFLWQAS  385 (387)
Q Consensus       339 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~-~~~~~~F~~~iw~lf  385 (387)
                      .   ...++++++.++.+..+.+.++..+.+| +...+.|+.|++||.
T Consensus       220 ~---~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~  264 (341)
T PLN02776        220 V---TSSPFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP  264 (341)
T ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1   1234566666666777777777775544 567788999999985

>PLN02922 prenyltransferase

Probab=99.96  E-value=3.2e-27  Score=231.07  Aligned_cols=235  Identities=17%  Similarity=0.127  Sum_probs=173.6

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCc
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~RP  175 (387)
                      ++++.|++.+||+++..+++++++|.++|......+++..   ++++++++++++.++|.+|||+|++  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            4678899999999999999999999999975435677543   5668899999999999999999975  6774332211


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLALAFL-----SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-----l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                      -..|  ++++++..++++.++++...+.     .+++.+.++ +++++.++.||.  ||+++|+++ +|++.+++.+|..
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l  163 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL  163 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence            2234  8999888877766665532221     244444444 578889999999  999999999 7999999999955


Q ss_pred             HHHHHHHHhhhHhhCC-CC---CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGK-PF---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML  326 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~-~~---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~  326 (387)
                      +..+.+.. ++...+. ..   .++...++..+...+++..+.++||++|+|+|++.|+||+|+++|++++.++...++.
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            55654432 1110101 00   1234455556677788889999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHhhhh
Q 016572          327 LGYGGAVVAGATSTLM  342 (387)
Q Consensus       327 l~~~~~~l~g~~~~~~  342 (387)
                      .+|+..+........+
T Consensus       243 ~~y~~~i~~v~~~~~p  258 (315)
T PLN02922        243 LLYSLLAALGLLKALP  258 (315)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            8887776655443333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=3.5e-27  Score=229.65  Aligned_cols=231  Identities=14%  Similarity=0.011  Sum_probs=176.8

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL  174 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~R  174 (387)
                      +++++.|++.+||+++..++.++++|.++|+...+++++..   ++++++++++++.++|.+|||+|++  .|+. +++ 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            36788999999999999999999999999965445677543   5668899999999999999999986  6873 332 


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLAL----AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l----~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~  250 (387)
                      ...++..+++++...+.++.++++++    .+..|++.+.++ +++++.++.||.  ||+++|+++ +||+.+++.+|..
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence            23455557888888877766666554    344465444455 568889999999  999999999 6999999999965


Q ss_pred             HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (387)
Q Consensus       251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~  330 (387)
                      ...+.+.     +..+  +++...++..+...+.+..+..+||++|+|+|+++|+||+|+++|+|++++++..++..+|+
T Consensus       160 ~v~g~~y-----v~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        160 AVAAALY-----SQTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            5555443     2222  24444555556667778888999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHhhhhh
Q 016572          331 GAVVAGATSTLMI  343 (387)
Q Consensus       331 ~~~l~g~~~~~~~  343 (387)
                      ..+........++
T Consensus       233 ~~i~~v~~g~~p~  245 (304)
T PRK07419        233 LELLPVLLGFWPW  245 (304)
T ss_pred             HHHHHHHHhhhHH
Confidence            7765544433343

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=2.7e-27  Score=228.66  Aligned_cols=215  Identities=14%  Similarity=0.058  Sum_probs=167.1

Q ss_pred             ccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc--CCCCCccccCccCH
Q 016572          108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI--NKPYLPLASGELSM  183 (387)
Q Consensus       108 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~--n~~~RPl~sG~ls~  183 (387)
                      ||+++..++.++++|.++|... ..+++..   ++++++++++++.++|.+|||+|.+  .|+.  .+|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            8999999999999999999654 3676543   5667889999999999999999984  3543  35689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhcH-----HHH-HHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572          184 GTGIAICAGSALLSLALA----FLSGS-----PAV-LCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (387)
Q Consensus       184 ~~al~~~~~l~~l~l~l~----~~l~~-----~~l-~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~  253 (387)
                      ++++..++++.+++++++    +..++     +.+ .++ +++++.++.||.  ||+++|+++ +||+.+++.+|....+
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~  152 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVL  152 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHH
Confidence            999988877776555443    33343     133 334 467888999999  999999999 7999999999965556


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~  333 (387)
                      |.+.     +..+  .++...++..+...+++..+..+||++|+|+|+++|+||+|+++|+|+++++...++..+|+..+
T Consensus       153 g~~y-----vq~~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       153 GTQY-----LQAH--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            5443     2222  23444444445566778888999999999999999999999999999999999888888887765


Q ss_pred             HHHH
Q 016572          334 VAGA  337 (387)
Q Consensus       334 l~g~  337 (387)
                      +...
T Consensus       226 ~~~~  229 (284)
T TIGR00751       226 VFML  229 (284)
T ss_pred             HHHH
Confidence            5443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-27  Score=227.26  Aligned_cols=267  Identities=14%  Similarity=0.126  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 016572           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~  173 (387)
                      .++++++|++++||+......++.+.|+++|..+  ..++..   ++++.+|..+..++++++|+++|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            4578999999999999999999999999999752  223322   45688999999999999999999999999988  9


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHH
Q 016572          174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LIL  251 (387)
Q Consensus       174 RPl~sG~ls~~~al~~~~~l~~l~l~l~-~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~  251 (387)
                      ||+++|+++++|++.+++++.++|+.+. +..|+.+..+++...++-.++||.+     +||++. -|+++|...| .|+
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~-~NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTP-QNIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcc-cceeeeeccccccc
Confidence            9999999999999999999999999887 6778776666644445556799985     799995 4667776666 787


Q ss_pred             HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (387)
Q Consensus       252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~  331 (387)
                      .+||.+     +.|. .+.+...  +++.+++|+-.--..-++.=+||-+++|++++|++-|++.+++... .+.+....
T Consensus       163 liGwaA-----vtg~-~~~~a~~--Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~-~y~~~l~~  233 (304)
T COG0109         163 LIGWAA-----VTGS-ISLGAIL--LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQIL-LYTLALAP  233 (304)
T ss_pred             cceeee-----eeCC-CCchHHH--HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHH-HHHHHHHH
Confidence            888654     3442 2333333  3333444432211111222233448999999999999998876532 33332221


Q ss_pred             H-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHHHHHhc
Q 016572          332 A-VVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMFLWQAS  385 (387)
Q Consensus       332 ~-~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~iw~lf  385 (387)
                      . ++...   .+..++.|.+...++...+.+...+.  +.|.+.+.+-|..|+-||+
T Consensus       234 ~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~  287 (304)
T COG0109         234 VSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA  287 (304)
T ss_pred             HHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            1 22111   22334456655555555555555444  2345788999999998875

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=1.2e-26  Score=219.61  Aligned_cols=241  Identities=24%  Similarity=0.271  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCccccCccCHHHHHHHHHH
Q 016572          115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICAG  192 (387)
Q Consensus       115 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~--n~~~RPl~sG~ls~~~al~~~~~  192 (387)
                      ++.+++.|...+...  ..++..   ++...++.++.+.++|.+||+.|+|+|++  |+|+||+++|+++++++..++++
T Consensus         4 ~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            445566664444332  233322   34456677799999999999999999999  88999999999999999999999


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChH
Q 016572          193 SALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG  272 (387)
Q Consensus       193 l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~  272 (387)
                      +.++++++++..++..+.+. +++.+.++.||   ||+|+||+++++++++++.++..+..+++.      .++.  .+.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~  146 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPP  146 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccH
Confidence            99999999988887766665 45666779999   678899999889999998877555555442      2221  133


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 016572          273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGH  352 (387)
Q Consensus       273 ~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~  352 (387)
                      +.++...+..++.......+|++|+|+|++.|++|+|+++|++++...  .+....+.. ........   .........
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~~--~~~~~~~~~-~~~~~~~~---~~~~~~~~~  220 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARYL--LLTAGLLLF-LLLLLGLF---SPWPLIIAL  220 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHH---HHHHHHHHH
Confidence            333433444566777788889999999999999999999999988771  122222211 01111111   112333344


Q ss_pred             HHHHHHHHHHHHHcCCCCHHhHHHHH
Q 016572          353 IILALMMWLRSRKVDLDNFDSQFGFY  378 (387)
Q Consensus       353 ~i~~~~l~~~~~~~d~~~~~~~~~F~  378 (387)
                      ...+..+.......+.++++.+++++
T Consensus       221 ~~~~~~l~~~~~~~~~~~~~~~~~~~  246 (257)
T PF01040_consen  221 LLAALALIFILWFFRKRDPKKPERLF  246 (257)
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            44445555556666666655555555

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.95  E-value=4.8e-26  Score=220.09  Aligned_cols=225  Identities=12%  Similarity=0.010  Sum_probs=168.1

Q ss_pred             HHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCccccCc
Q 016572          103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE  180 (387)
Q Consensus       103 y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~RPl~sG~  180 (387)
                      |++.+||+++..+++++++|.++|+...+++++..   ++++++++++.|.++|.+|||+|++  .|+.+. . ...++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence            67899999999999999999999975445677543   4567889999999999999999975  477422 1 122333


Q ss_pred             cCHHHHHHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572          181 LSMGTGIAICAGSALLSLAL----AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (387)
Q Consensus       181 ls~~~al~~~~~l~~l~l~l----~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~  256 (387)
                      .+++++...+.++.++++++    .+..+++.+.++ +++++.++.||.  ||+++|+++ +||+++++.+|.....+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence            45777777766666555543    334453333444 568889999999  999999999 6999999999955555543


Q ss_pred             HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (387)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g  336 (387)
                      .     +..+  ++++..++..+...+.+.++.+.||++|+|+|+++|+||+|+++|+|++.++...++..+|+..+...
T Consensus       153 y-----vqt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v  225 (285)
T TIGR02235       153 Y-----AQSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV  225 (285)
T ss_pred             H-----HhCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3     2222  34445555556667788889999999999999999999999999999999999988888888766554


Q ss_pred             HHhhhhh
Q 016572          337 ATSTLMI  343 (387)
Q Consensus       337 ~~~~~~~  343 (387)
                      .....+|
T Consensus       226 ~~~~~p~  232 (285)
T TIGR02235       226 IGGFLPW  232 (285)
T ss_pred             HHhhhHH
Confidence            4333334

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=4.9e-26  Score=219.14  Aligned_cols=218  Identities=17%  Similarity=0.176  Sum_probs=153.2

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVA-QIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (387)
Q Consensus       100 l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~-~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s  178 (387)
                      +|.+++++||.+|+.+.+++..|+++| ++.+  ++.+    ++..++ ....+.+.|.+|||+|+|.|+.|+|.+.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            367899999999999999998899999 3322  2322    222222 33444555677999999999999874432 4


Q ss_pred             CccCHHHHHHHHHHHHH-----HHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572          179 GELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (387)
Q Consensus       179 G~ls~~~al~~~~~l~~-----l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~  253 (387)
                      |.++++++....+...+     +++.+....+++.+.++ .++++.++.||.  ||.|+|++++.+++..++.+..+..+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~  149 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY  149 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence            88999987444333332     22233333355444444 467888999999  99999999987776554433322334


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~  333 (387)
                      |.+.     + ++.  .+...++....+.+|+.+++.+||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+
T Consensus       150 G~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~  221 (282)
T PRK13105        150 GLVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML  221 (282)
T ss_pred             HHHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            4322     2 332  2334455556677889999999999999999999999999999999999999998888887766


Q ss_pred             HHH
Q 016572          334 VAG  336 (387)
Q Consensus       334 l~g  336 (387)
                      ..+
T Consensus       222 ~~~  224 (282)
T PRK13105        222 ALP  224 (282)
T ss_pred             HHH
Confidence            443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=3e-26  Score=221.72  Aligned_cols=222  Identities=22%  Similarity=0.278  Sum_probs=153.3

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~  177 (387)
                      +-+++++++.|+.+.+....++..+.....  ..+. +.    ....+++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~-~~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGL-PI----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcC-hh----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999988877665544432110  0111 11    2345678889999999999999999999999999988


Q ss_pred             cCccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHhhhccCCCCcc-cccccCCchhHHHHHHHHH-HHHHH
Q 016572          178 SGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMGL-ILQIP  254 (387)
Q Consensus       178 sG~ls~~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~-rlKr~~~~~~l~i~~~~g~-~~~~g  254 (387)
                      +++...+.+..+..+...+++.+ +...|+..+.++ +++.++++.||.  ||. ++||.+.++|+++|..+|. +...+
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            54433333333333333344333 223366665555 456778999998  555 5899999999999999984 33333


Q ss_pred             HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (387)
Q Consensus       255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l  334 (387)
                      ++.      .+.  .++...++...+.+++.+..+.++|++|+|+|+++|++|+|+++|+|+++++...+..+.++..+.
T Consensus       152 ~~~------~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~  223 (285)
T PRK12872        152 VYY------YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLIL  223 (285)
T ss_pred             HHh------ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence            332      111  123333444445556778889999999999999999999999999999999988888777766654


Q ss_pred             HHH
Q 016572          335 AGA  337 (387)
Q Consensus       335 ~g~  337 (387)
                      ...
T Consensus       224 ~~~  226 (285)
T PRK12872        224 GVY  226 (285)
T ss_pred             HHH
Confidence            443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.95  E-value=2e-25  Score=213.57  Aligned_cols=230  Identities=16%  Similarity=0.101  Sum_probs=172.5

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK  171 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~----n~  171 (387)
                      ++.+.|++++|||++..++.|++.|.++|......+++   +.++++++++++++...|..|||+|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            45688999999999999999999999999655444554   336778999999999999999999974  5653    22


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHHHH----HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHH
Q 016572          172 PYLPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (387)
Q Consensus       172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~----~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~  247 (387)
                      -++-+...+++++..+.+.+.+...+.+++    ...++.-+.++ +++.+.++.|+.  +|+++++.+ +|++..++.+
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence            355666777888887777665555444433    33454423344 578889999999  889999998 7999999999


Q ss_pred             HHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (387)
Q Consensus       248 g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l  327 (387)
                      |.....+.+.     +.  +..++...++..+...+.+..+...||+||+|+|+++|++|+|+++|++.++.+...++..
T Consensus       159 G~l~v~g~~y-----iq--t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYY-----IQ--TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHH-----Hh--cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            9555555433     11  1223444555555666677778999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHhhh
Q 016572          328 GYGGAVVAGATSTL  341 (387)
Q Consensus       328 ~~~~~~l~g~~~~~  341 (387)
                      +|++.++.......
T Consensus       232 a~l~~~~~~i~~~~  245 (303)
T COG1575         232 AYLAIVIFVILGLF  245 (303)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88776654444333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=6.2e-25  Score=211.91  Aligned_cols=218  Identities=20%  Similarity=0.253  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHH--HHHHHHHhhhhhcccccccccCCCC
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQ--IFMNISLCSLNQICDVEIDKINKPY  173 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~--~l~~~a~~~iND~~D~~~D~~n~~~  173 (387)
                      +.+++.|+++.||+++..+..++++|.++|....++ +++..     +++++.  +..+.+.|++|||+|+|+|+.|+|+
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            467889999999999999999999999999654332 33321     112222  2344556779999999999999875


Q ss_pred             Cc---cccCccCHHHHHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH
Q 016572          174 LP---LASGELSMGTGIAI-CAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (387)
Q Consensus       174 RP---l~sG~ls~~~al~~-~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~  249 (387)
                      +.   ++   .+.+.+... .+....+++.+....++....+. +..+++.+.||.  ||+|+|++++.+..+.++. ..
T Consensus        80 ~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~  152 (282)
T PRK12875         80 DREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL  152 (282)
T ss_pred             cCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence            43   33   111222211 22233334444444444333232 346778899999  9999999997554433321 12


Q ss_pred             HHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (387)
Q Consensus       250 ~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~  329 (387)
                      +...+++.     ..|   +.++..++  +...+|+.+++++||++|+|+|+++|+||+|+++|++++++++..++.++.
T Consensus       153 ~~~~~y~~-----~tg---~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        153 PGVAAYAL-----VSG---SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             HHHHHHHH-----HcC---CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence            22223222     122   23333322  334688999999999999999999999999999999999988887777776


Q ss_pred             HHHHHHH
Q 016572          330 GGAVVAG  336 (387)
Q Consensus       330 ~~~~l~g  336 (387)
                      ++.+..+
T Consensus       223 ~~~~~~~  229 (282)
T PRK12875        223 AAFAAVD  229 (282)
T ss_pred             HHHHHHH
Confidence            6666554

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=2.2e-24  Score=208.32  Aligned_cols=177  Identities=23%  Similarity=0.216  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccC
Q 016572          146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV  225 (387)
Q Consensus       146 l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~  225 (387)
                      +.+.+...++|++|||+|+|+|++|+|+||.+    +++.+..++++..++|+.+++..|+.  +++ +++.+.++.|+.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~-ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLA-FLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-HHHHHHHHHhcC
Confidence            45567789999999999999999999999986    78889999999999999999988853  234 457778999997


Q ss_pred             C----CCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 016572          226 P----LPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK  301 (387)
Q Consensus       226 ~----lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~  301 (387)
                      +    ..|+|+|+.+.+||+++++.||..+..+  .  +. ..+   .+. ......++.....++++.+||++|+|+|+
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~-~~~~i~l~~~~~l~~~~iindirDiEGDr  208 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLI-PVGLIFLFFGVKLFINSCVYDFKDVKGDT  208 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHH-HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence            4    2245889999999999999998432211  1  00 011   010 11111111112235667899999999999


Q ss_pred             HcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572          302 AFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (387)
Q Consensus       302 ~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~  338 (387)
                      +.|++|+|+++|+++++++...+..++++..+.....
T Consensus       209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~  245 (307)
T PRK13591        209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF  245 (307)
T ss_pred             HcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888766554443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=1.9e-23  Score=200.14  Aligned_cols=177  Identities=16%  Similarity=0.135  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh
Q 016572          141 VLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTG  220 (387)
Q Consensus       141 ~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~  220 (387)
                      .+++++.+++..+++|++|||+|+|+|++|+|+||+|||++|+++|+.++.++.++++.+....     ... +...++.
T Consensus        48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~  121 (299)
T PRK13592         48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFL  121 (299)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHH
Confidence            4556677888899999999999999999999999999999999999999988877776665444     111 1233344


Q ss_pred             hhc-----cCCCCcccccccCCchhHHHHHHHHHHHHHH--HHHH-hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 016572          221 AAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLK  292 (387)
Q Consensus       221 ~~Y-----s~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g--~~~~-~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~  292 (387)
                      ++|     +.     ++|+.++.||+.++...|.++..|  ++.. .+....|.+. .....+++.+..++.++++|+.+
T Consensus       122 ~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~K  195 (299)
T PRK13592        122 YIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVCR  195 (299)
T ss_pred             HHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            556     65     489999999999998888555333  2211 0001122111 11111232333445688899999


Q ss_pred             hCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572          293 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (387)
Q Consensus       293 d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~  331 (387)
                      |++| |||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus       196 dieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        196 KIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             hhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence            9999 88886 5999999999999999887766665543

>PRK08238 hypothetical protein; Validated

Probab=99.89  E-value=3.9e-21  Score=197.91  Aligned_cols=189  Identities=24%  Similarity=0.251  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 016572           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY  173 (387)
Q Consensus        96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n--~~~  173 (387)
                      .+.++++|++++|||+|+++.+. +++.+++.. ..+  ...+...++++++..++++++|++||++|+|+|++|  ||+
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            45679999999999999999876 447766632 222  222233556778888999999999999999999999  569


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (387)
Q Consensus       174 RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~  253 (387)
                      ||++||++|+++|+.++.+++++|+++++.+|+..++.. +..+++.++||.     ++||+++++++++|+.++..+..
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~  336 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIA  336 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998887544433 456777889997     48999999999998777655555


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCC
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM  305 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~  305 (387)
                      |+.+      .+    .+.+.|++ .+..++.....+.+...|.++++..|.
T Consensus       337 G~~a------~~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        337 GAAA------IG----VALSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHH------hc----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            5332      22    12233332 222234455678888888888877775

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=8e-21  Score=184.17  Aligned_cols=148  Identities=24%  Similarity=0.230  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCC
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYL  174 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n--~~~R  174 (387)
                      .+++++|++++||++|+++.+.+. +.+++... .+..  .+...++++++.+++++++|++||++|+|+|++|  ||+|
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            357899999999999999987544 44455321 1111  1223455667778889999999999999999997  6699


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g  254 (387)
                      |+++|++++++|+.++.++.++|+.+++.+|+....+. +..+++.++||.     ++||++.++++++++.++..+..|
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G  157 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG  157 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888887665554 456777889997     589999999998887666444444

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.73  E-value=2.1e-18  Score=164.08  Aligned_cols=257  Identities=15%  Similarity=0.137  Sum_probs=166.1

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 016572           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (387)
Q Consensus        98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RP  175 (387)
                      +.++.|+||++|+--...+++...|+++|..+   +++.   .++.+.+|..+..++.|.+||+++...|.+++|  +||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            46789999999997777777777888888654   3322   245678999999999999999999999999988  999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHHH
Q 016572          176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI  253 (387)
Q Consensus       176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~  253 (387)
                      +++|++++.+|+.++.+..+.|+.+.++ .|+....++..=.++.+.+|+-      +||.. +.|-.+|...| +++.+
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrih-iinTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIH-IINTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhh-hhhhHHHHHhccCCccc
Confidence            9999999999999999888888776544 7876655543212233456774      89876 34555665556 78888


Q ss_pred             HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHH--HHHHHHhCCChHHHHHcCCccchhhh---ccccHHHHHHHHHHHH
Q 016572          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF--VNGLLKDLPDVEGDKAFGMQTLCVLL---GKEKVLPLCVNMMLLG  328 (387)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~--~~~~i~d~~D~egD~~~G~~Tlpv~l---G~~~a~~l~~~l~~l~  328 (387)
                      ||.+..     |.   ..+..+++...+..|.+  ...+..+++  +|-.++|.+.+++.=   -.+.+++....++.++
T Consensus       239 GwAAas-----g~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  239 GWAAAS-----GL---LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             hhhhhc-----cC---CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            875432     21   12223333333334432  223333443  233899999998854   2334445444444444


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHHHHHh
Q 016572          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMFLWQA  384 (387)
Q Consensus       329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~iw~l  384 (387)
                      |....       .+...+.|.+-......++.+...+.  |.|..++.+-||.++|+|
T Consensus       309 ~~~~~-------~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL  359 (409)
T KOG1380|consen  309 YAAPS-------TDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL  359 (409)
T ss_pred             ccccc-------cCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence            32211       11122233333333444444444433  667789999999999986

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.56  E-value=2.3e-15  Score=137.52  Aligned_cols=231  Identities=13%  Similarity=0.054  Sum_probs=160.5

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCCC
Q 016572           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKPYL  174 (387)
Q Consensus        97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~--~~D~~n~~~R  174 (387)
                      ..+.+.|+-..||+....+..++.+|.++|+......++. +..+.++.++++..+.++|.+|.|+|.  .+|++...+|
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~-l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr  136 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR-LATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR  136 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh-HHHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence            3688999999999999999999999999997543222222 223455667778899999999999996  6899888899


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHH---HHhcHH---HHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572          175 PLASGELSMGTGIAICAGSALLSLALA---FLSGSP---AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (387)
Q Consensus       175 Pl~sG~ls~~~al~~~~~l~~l~l~l~---~~l~~~---~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g  248 (387)
                      .++...+.+.++..++.++...|...+   ..+++.   .+.+....++--.++|+.+.   .+|... +|.+++-+.+|
T Consensus       137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fg  212 (359)
T KOG4581|consen  137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFG  212 (359)
T ss_pred             hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeec
Confidence            999999999999999888877665443   333432   12222123455568999753   577766 56666666666


Q ss_pred             -HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572          249 -LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (387)
Q Consensus       249 -~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l  327 (387)
                       ..+.+.+..      ..+...+.+.  -..+...+-+-++.+-|+.+|.|.||++|+-|+++.+|+..+..++..++.+
T Consensus       213 piavlfaf~~------q~g~l~~~~l--~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~  284 (359)
T KOG4581|consen  213 PIAVLFAFAI------QTGHLAIFPL--GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA  284 (359)
T ss_pred             hHHHHHHHHH------hcCceeEEee--hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence             222222211      1122222111  1111223345567788999999999999999999999999888888888888


Q ss_pred             HHHHHHHHHHHhh
Q 016572          328 GYGGAVVAGATST  340 (387)
Q Consensus       328 ~~~~~~l~g~~~~  340 (387)
                      .|....+.+.-+.
T Consensus       285 py~lf~i~~~~~s  297 (359)
T KOG4581|consen  285 PYLLFFIFALHCS  297 (359)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777665544

>PRK13591 ubiA prenyltransferase; Provisional

Probab=91.11  E-value=0.91  Score=44.65  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=37.0

Q ss_pred             hhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHHH---HHHHHHhc-----HHHHHHHHHHHHHHhhhccC
Q 016572          157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLS---LALAFLSG-----SPAVLCAVIAWGLTGAAYSV  225 (387)
Q Consensus       157 ~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l~---l~l~~~l~-----~~~l~l~~~~~~~l~~~Ys~  225 (387)
                      .+||+-|.|.|+.+.+ .-|+.=|+   +.+..+...+.+++   ++++..++     +...+.+++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            6899999999999865 55665554   33333332222222   22222222     22233344566777788987

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=90.04  E-value=3.1  Score=40.81  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHH
Q 016572          143 KAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAI  189 (387)
Q Consensus       143 l~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~  189 (387)
                      +..+......+..+..|++.|.|+|++|+|+-+.+  ++..+.+..+
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            34455666777888899999999999998854433  3444444444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.65  E-value=2.1  Score=42.27  Aligned_cols=50  Identities=18%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHH
Q 016572          144 AVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL  196 (387)
Q Consensus       144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l  196 (387)
                      ..+...+..+.....||+-|+|.|+.+.+ .-|.   ++.++.+..+..++.++
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHH
Confidence            34455566677788999999999999865 3343   34455555554444333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.63  E-value=4.7  Score=39.65  Aligned_cols=39  Identities=13%  Similarity=0.051  Sum_probs=26.0

Q ss_pred             HHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHH
Q 016572          150 FMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICA  191 (387)
Q Consensus       150 l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~  191 (387)
                      +........||+-|+|+|+.+.+ .-|.   ++.++.+..+..
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~  224 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP  224 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence            45667778899999999999876 3343   334444444433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.40  E-value=5.7  Score=38.21  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE  180 (387)
Q Consensus       146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~  180 (387)
                      +..++......++||+-|+|.|+.++. .-|..-|+
T Consensus       168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            344455566678899999999998654 55655555

>PLN02922 prenyltransferase

Probab=87.43  E-value=2.7  Score=41.53  Aligned_cols=45  Identities=9%  Similarity=0.015  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHH
Q 016572          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGS  193 (387)
Q Consensus       146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l  193 (387)
                      +...+........||+-|+|.|+++++ .-|.   ++.++.+..+...+
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l  240 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWA  240 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHH
Confidence            333455567788899999999999876 3333   34445554444333

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=84.19  E-value=11  Score=36.61  Aligned_cols=45  Identities=13%  Similarity=-0.026  Sum_probs=29.4

Q ss_pred             HHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHH
Q 016572          149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL  196 (387)
Q Consensus       149 ~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l  196 (387)
                      .+...+....||+-|+|+|+.+.+ .-|.   ++.++.+..+...+..+
T Consensus       171 gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~  216 (285)
T TIGR02235       171 GLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISL  216 (285)
T ss_pred             HHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHH
Confidence            355667788899999999998865 3333   34455555554444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=84.03  E-value=6.1  Score=38.48  Aligned_cols=57  Identities=12%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016572          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLSLALAFLSG  205 (387)
Q Consensus       146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~  205 (387)
                      ++..+...+...+||+-|.|.||.+.. .-|.   ++.++.+..++.++.+++.++...++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445677889999999999998754 3333   45567777777776666665544444

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=83.51  E-value=9.7  Score=36.57  Aligned_cols=31  Identities=19%  Similarity=0.072  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572          283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK  314 (387)
Q Consensus       283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~  314 (387)
                      +...+-..+||+.|+|.|++. ++.=|..-|+
T Consensus        48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            334456789999999999988 6777777775

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=83.24  E-value=5.9  Score=38.37  Aligned_cols=48  Identities=19%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHH
Q 016572          145 VVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSAL  195 (387)
Q Consensus       145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~  195 (387)
                      .+...+........||+-|+|.|+.+.+ .-|..   +..+.+..+...+..
T Consensus       174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~---lG~~~a~~~~~~l~~  222 (293)
T PRK06080        174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVR---LGDKNARRLHAALLA  222 (293)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEee---ECcHhHHHHHHHHHH
Confidence            3444556667778899999999998754 44443   334444444433333

>PLN00012 chlorophyll synthetase; Provisional

Probab=82.63  E-value=6.7  Score=39.78  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhhhhcccccccccC-CCCCccccCc
Q 016572          148 QIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (387)
Q Consensus       148 ~~l~~~a~~~iND~~D~~~D~~n-~~~RPl~sG~  180 (387)
                      .++...+....||+-|+|.|++. ++.-|+.-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34556667789999999999876 4566766665

>PRK13592 ubiA prenyltransferase; Provisional

Probab=82.01  E-value=29  Score=34.14  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572          283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK  314 (387)
Q Consensus       283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~  314 (387)
                      +.+.+-.++||+.|+|-|+. +++.=|+--|+
T Consensus        57 ~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~   87 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRR-LFPHRALPSGR   87 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCC
Confidence            34555689999999999955 46666665554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=81.74  E-value=16  Score=35.41  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572          144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (387)
Q Consensus       144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~  180 (387)
                      ..++.++....-..+|++.|+|.|++.. |.-|+.-|+
T Consensus       165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            3455566667777899999999999764 566776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=80.85  E-value=6.9  Score=38.58  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=22.8

Q ss_pred             HHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572          150 FMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (387)
Q Consensus       150 l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~  180 (387)
                      +...+....||+.|+|.|+... +.-|+.-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            3455567899999999999874 466665554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=80.02  E-value=8.1  Score=37.30  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=22.3

Q ss_pred             HHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572          150 FMNISLCSLNQICDVEIDKINKP-YLPLASGE  180 (387)
Q Consensus       150 l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~  180 (387)
                      +...+....||+-|+|.|+++.+ .-|+.-|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            34555678999999999998754 55554454

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00