Citrus Sinensis ID: 016582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHRH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHccccccEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccHHcHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHEEEEEEEEHHHHHHcccccccccHcccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEEccccccccccccccccccEEEEccccccEEEccccccEEEEEccccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdvpsaelhtetetetfpllmerpenvnnceHIIDITitdvsssnsthdrtsngldstrhedgssgssrnptsqpstsvngsntrnvaftrrgesrrrrsplnsglWISVELVLTLSQVVSAVVVLSVfrhehpraplfEWIVGYAAGCVATLPLLYWRYRqsnqvsepdsvqsrnssarlnapaapfsisvprtsevedhrapiashrggqntgvlsPRFKVLVEYFKMALDCFFAVWFVVGNVwifgghssaadapnLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGataesidalpTYKFklkksrssndrdnsssigdggvvaagtekervisgedavcfcwtagfnheFRYLVIDLSIFVYHRH
Flexible Loop (DISEMBL)
mdvpsaelhtetetetfpllmeRPENVNNCEHIIDItitdvsssnsthdrtsngldstrhedgssgssrnptsqpstsvngsntrnvaftrrgesrrrrsplnsglWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSsarlnapaapfsisvprtseVEDHRapiashrggqntgvlSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGataesidalptykfklkksrssndrdnsssigdggvvaaGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHRH
Low Complexity Region (SEG)
MDVPSAELHTETETETFPLLMERPENVNNCEHiidititdvsssnstHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTrrgesrrrrsPLNSGLWISVElvltlsqvvsavvvlsvFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLkksrssndrdnsssIGDGGVVAAGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHRH
Disordered region (IsUnstruct)
*************************NVNNCEHIIDITIT****************************************************************SGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYR*****************************************************GVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTY******************************KERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYH**
Disordered Region (DISOPRED)
******************LL********************************************************************************PLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSN**************************************************GVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLR*************IDALPTYKF********************************ISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHR*
Disordered Region (DISEMBL)
*************TETFPLLMERPENVNNCEHIIDITITDV****************************************SNTRNVAF************LNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQS*******************APAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFK***************IGDGGVVAAGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHRH
Disordered Region (DISPRO)
****************FPLLMERPENVNNCEHIIDITI*************************************************************SPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQ***************************************************LSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKK*************GDGGVVAAGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGFNHEFRYLVIDLSIFVYHRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.638	0.633	0.255	3e-17
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.633	0.600	0.245	1e-13
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.560	0.604	0.258	2e-12
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.521	0.530	0.255	6e-11

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 50/297 (16%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
           + ++++  L+ V   V VL + R E P  PL  W+VGY   C   +  +   YR+  +  
Sbjct: 110 VFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRR 169

Query: 168 EPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEY 227
            P+        + L   ++   +S+ +  +  +   P A H    NT             
Sbjct: 170 HPED----GGGSGLTNSSSQQYVSLAQLEDRGETSNP-AKHLESANTM------------ 212

Query: 228 FKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCIVFLA----ISCIGYAMPFILC 282
                  F  +W+++G  W+  GG + ++D+P LY LCI+FL           A+  ++ 
Sbjct: 213 -------FSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIG 265

Query: 283 ATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGG 342
             +CCCLPCI++IL     +A   GA+   ID +P ++F       + + +  S    G 
Sbjct: 266 LAVCCCLPCIIAIL---YAVADQEGASKNDIDQMPKFRFT-----KTGNVEKLSGKARGI 317

Query: 343 VVAAGTEK--ERVISGEDA---VCFC-WTAGF-------NHEFRYLVIDLSIFVYHR 386
           +   GT+   ER +S EDA   +C C +  G        NH F    ID  + +  R
Sbjct: 318 MTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSR 374

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 28/273 (10%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
           + +++V  L+ V  A  +L + R EHP  PL  W++GYA  CV  +  +   YR+ N+  
Sbjct: 101 VVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRR 160

Query: 168 EPDSVQSRNSSARLNAPAAPF------SISVPRTSEVEDHRAPIASHRGGQNTGVLSPRF 221
              +  +    +R ++ ++        ++   R S V+D            + G L    
Sbjct: 161 TNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQD-----------LSLGHLDTES 209

Query: 222 KVLVEYFKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCI----VFLAISCIGYA 276
             + ++ + A   F  +W+++G  W+  GG   A ++P +Y L I      +       A
Sbjct: 210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query: 277 MPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSS 336
           +  ++   +CCCLPCI+++L     +A   GA+ E I+ L  +KF+     + +  D + 
Sbjct: 270 LACVIGIAVCCCLPCIIAVL---YAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQ 326

Query: 337 SIGDGGVVAAGTEK--ERVISGEDA-VCFCWTA 366
              +G +   GT+   E  +  EDA  C C +A
Sbjct: 327 GTTEGIMTECGTDSPIEHTLLQEDAECCICLSA 359

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 108/267 (40%), Gaps = 50/267 (18%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLL---YWRYRQSN 164
           ++ +++   + V+++ V+L     E P  P+  WI  Y   C+  + L+   YWR     
Sbjct: 78  VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR----- 132

Query: 165 QVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVL 224
                     RNS+ R             R  E  DH      +   Q++   S  +  +
Sbjct: 133 ----------RNSTRR------------ARDLESYDHEDYNIEYDYEQDSDDNSTTYSFV 170

Query: 225 VEYFKMALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCA 283
                +     F +W+++G  W+  GG     +APNLY L ++FLAI         +L  
Sbjct: 171 KRCESINTVISF-IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLAC 229

Query: 284 TI----CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIG 339
            +    CCCLPCI+++L     +A T G +   +  LP YKFK   S   N        G
Sbjct: 230 LVGIALCCCLPCIIALL---YAVAGTEGVSEAELGVLPLYKFKAFHSNEKN------ITG 280

Query: 340 DGGVV-----AAGTEKERVISGEDAVC 361
            G +V           ER +  EDA C
Sbjct: 281 PGKMVPIPINGLCLATERTLLAEDADC 307

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 64/266 (24%)

Query: 132 EHPRAPLFEWIVGYAAGCVATLPLLYWRY--------------------RQSNQVSEPDS 171
           E+P  PL  WI+GY   C+  +  +   Y                      S+ + E + 
Sbjct: 99  ENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEG 158

Query: 172 VQ-SRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKM 230
           +  SRNS  R                ++E+     A H    NT         ++ +   
Sbjct: 159 LGLSRNSDER-----------YLELGQLENENNSFAKHLESANT---------MISF--- 195

Query: 231 ALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCI----VFLAISCIGYAMPFILCATI 285
                  +W+V+G  W+  GG   A  +P LY LCI      +       A+  ++   +
Sbjct: 196 -------IWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAV 248

Query: 286 CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGD-GGVV 344
           CCCLPCI+++L     +A+  GA+ E ID L  +KF+       +  D     GD GGV+
Sbjct: 249 CCCLPCIIAVLYA---VAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVM 305

Query: 345 A-AGTEK--ERVISGEDA-VCFCWTA 366
              GT+   E  +  EDA  C C +A
Sbjct: 306 TECGTDSPVEHALPHEDAECCICLSA 331

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224092390	406	predicted protein [Populus trichocarpa]	0.961	0.916	0.701	1e-142
224143048	434	predicted protein [Populus trichocarpa]	0.956	0.852	0.692	1e-136
255551132	437	ring finger protein, putative [Ricinus c	0.966	0.855	0.670	1e-134
449442204	424	PREDICTED: E3 ubiquitin-protein ligase A	0.968	0.884	0.691	1e-132
359476391	421	PREDICTED: E3 ubiquitin-protein ligase A	0.968	0.890	0.643	1e-126
296081927	401	unnamed protein product [Vitis vinifera]	0.917	0.885	0.654	1e-119
359482955	416	PREDICTED: E3 ubiquitin-protein ligase A	0.891	0.829	0.591	1e-114
356554344	440	PREDICTED: E3 ubiquitin-protein ligase A	0.953	0.838	0.574	1e-112
356550569	419	PREDICTED: E3 ubiquitin-protein ligase A	0.968	0.894	0.540	1e-111
297802754	489	hypothetical protein ARALYDRAFT_328473 [	0.925	0.732	0.618	1e-111

>gi|224092390|ref|XP_002309588.1| predicted protein [Populus trichocarpa] gi|222855564|gb|EEE93111.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/378 (70%), Positives = 302/378 (79%), Gaps = 6/378 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDVPS ELH+E++T+TFPLLMERPEN+N+  HIIDI        + +HDR S+GL+++ H
Sbjct: 1   MDVPSTELHSESQTDTFPLLMERPENLNSSAHIIDIPRNIEVPGSPSHDRISSGLEASSH 60

Query: 61  EDGSSGSSRNPTSQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           ED  S   R P++QPSTS+ NG+N+R+ +  RRGE+RRRRSPLNSGLWISVELVLTLSQ+
Sbjct: 61  EDRPSSGVRAPSTQPSTSLSNGTNSRSSSLIRRGEARRRRSPLNSGLWISVELVLTLSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           V+++VVLSV RHEHP APLF WIVGYA+GCVATLPLLYWRYR  NQ  E DS Q+   SA
Sbjct: 121 VASIVVLSVSRHEHPHAPLFAWIVGYASGCVATLPLLYWRYRYRNQSLEQDSAQNHQGSA 180

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVW 239
            +N PA PFS+SV R SE +D R+   S RG QN  VL+ R KVLVEYFKMALDCFFAVW
Sbjct: 181 HINVPAGPFSLSVSRNSESDDRRSATTSPRGSQN-AVLNARLKVLVEYFKMALDCFFAVW 239

Query: 240 FVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLR 299
           FVVGNVWIFGGHSSA +APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+S+LG R
Sbjct: 240 FVVGNVWIFGGHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGYR 299

Query: 300 EDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDA 359
           EDL QTRGAT ESIDALPTYKFKL K+R  N  D+S+   DGGVVAAGTEKERVISGEDA
Sbjct: 300 EDLTQTRGATTESIDALPTYKFKLIKNR--NGEDSSAGASDGGVVAAGTEKERVISGEDA 357

Query: 360 VCFCWTAGF--NHEFRYL 375
           VC    A F  N E R L
Sbjct: 358 VCCICLAKFANNDELREL 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143048|ref|XP_002324833.1| predicted protein [Populus trichocarpa] gi|222866267|gb|EEF03398.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/380 (69%), Positives = 298/380 (78%), Gaps = 10/380 (2%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDV S ELH+E +T+TFPLLMER EN N+ EHIIDI   +VS S S H+R S GL+++ H
Sbjct: 1   MDVASTELHSENQTDTFPLLMERQENPNSSEHIIDIR-NEVSVSPS-HNRISTGLEASLH 58

Query: 61  EDGSSGSSRNPTSQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           ED      R PTS P TS+ NG+N+R+ +  RRGE+RRRRSPLNSGLWISVELVLTLSQ+
Sbjct: 59  EDRPLSGVRAPTSPPPTSLSNGTNSRSSSLIRRGEARRRRSPLNSGLWISVELVLTLSQI 118

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           ++++VVLSV R EHPRAPLF WIVGYA+GCVATLPLLYWRY   NQ  E DS Q+   SA
Sbjct: 119 IASIVVLSVSRKEHPRAPLFAWIVGYASGCVATLPLLYWRYSHRNQALEQDSAQNHQGSA 178

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRF--KVLVEYFKMALDCFFA 237
            +N PA PFS+SV R SE ED R+   S RGGQN  VL+ R+  KVL+EYFKMALDCFFA
Sbjct: 179 HINVPAGPFSLSVSRNSEGEDRRSATTSPRGGQN-AVLNARYELKVLLEYFKMALDCFFA 237

Query: 238 VWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILG 297
           VWFVVGNVWIFG HSSA +APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG
Sbjct: 238 VWFVVGNVWIFGSHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILG 297

Query: 298 LREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGE 357
            REDL QTRGAT ESIDALPT+KFKL K+R  N  D+SS   DGG+VAAGTEKERVISGE
Sbjct: 298 FREDLTQTRGATPESIDALPTHKFKLIKNR--NGEDSSSGAADGGIVAAGTEKERVISGE 355

Query: 358 DAVCFCWTAGF--NHEFRYL 375
           DAVC    A +  N E R L
Sbjct: 356 DAVCCICLAKYANNDELREL 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551132|ref|XP_002516614.1| ring finger protein, putative [Ricinus communis] gi|223544434|gb|EEF45955.1| ring finger protein, putative [Ricinus communis]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/379 (67%), Positives = 301/379 (79%), Gaps = 5/379 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDV S E H+E+ T+T PLLME+  ++N+ EHIIDI  +  SS +++HDRT++GL+++ +
Sbjct: 1   MDVSSTEQHSESLTDTCPLLMEQSNSINSSEHIIDIPRSSDSSPSTSHDRTTSGLEASSN 60

Query: 61  EDGSSGSSRNPT-SQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQ 118
           ED  + S R P+ S  ST   NGSNTRN +  RRGE+RRRRSPLNSGLWISVELVLT+SQ
Sbjct: 61  EDRPTTSVRTPSISHLSTGTSNGSNTRNSSLIRRGEARRRRSPLNSGLWISVELVLTVSQ 120

Query: 119 VVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
           +++++VVLS+ RHEHPRAPLF WIVGYA+GCVATLPLLYWRYR  NQV+E ++ Q R SS
Sbjct: 121 IIASIVVLSLSRHEHPRAPLFAWIVGYASGCVATLPLLYWRYRHRNQVTEQEAAQPRQSS 180

Query: 179 ARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
              + P    SIS+ R SEV D R+   S RGGQN+G L+ R K LVEYFKMALDCFFAV
Sbjct: 181 -HFSVPGDSISISITRNSEVVDRRSSSTSSRGGQNSGALNARLKTLVEYFKMALDCFFAV 239

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSSA +APN+YRLCIVFL  SCIGYAMPFILCATICCCLPCI+S+LG 
Sbjct: 240 WFVVGNVWIFGGHSSATEAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISLLGF 299

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL QTRGAT+ESIDALPTYKFKL K R+ +DRD++S  GDGGVVAAGTE ER ISGED
Sbjct: 300 REDLGQTRGATSESIDALPTYKFKLNKHRTGDDRDSNSGAGDGGVVAAGTEHERFISGED 359

Query: 359 AVCFCWTAGF--NHEFRYL 375
           AVC    A +  N E R L
Sbjct: 360 AVCCICLAKYANNDELREL 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442204|ref|XP_004138872.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus] gi|449499624|ref|XP_004160867.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 309/379 (81%), Gaps = 4/379 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTR 59
           MDVPS EL+ ++E +++PLLM RPE+ N+ EHIIDIT   D   S   H R+SNGL+S++
Sbjct: 1   MDVPSVELNCDSEGDSYPLLMARPEHSNSSEHIIDITGAGDSGPSGLPHGRSSNGLNSSQ 60

Query: 60  HEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
            ED  S S+R P SQPSTS  GSN+RN +F RRG++RRRRSPLNSGLWIS+EL+LT+SQ+
Sbjct: 61  PEDRPSSSTRVPLSQPSTSSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           ++A++VLS+ ++E PRAPLF WIVGYA+GC ATLPLLYWRYR  NQ SE DS+QS  SS+
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQSSS 180

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVW 239
           R+N PA PFS+SV R SE E+ + P  S RG Q +GVLS R KVLVEYFKM LDCFFAVW
Sbjct: 181 RINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLSARLKVLVEYFKMGLDCFFAVW 240

Query: 240 FVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLR 299
           FVVGNVWIFGGHSSA++APNLYRLCIVFL  SCIGYAMPFILC TICCCLPCI+SILG R
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 300 EDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSS-SIGDGGVVAAGTEKERVISGED 358
           EDL+QTRGAT+ESI+ALPTYKFKLKKSRS +DR+N+S +   GGVVAAGTEKERVISGED
Sbjct: 301 EDLSQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 359 AVCFCWTAGF--NHEFRYL 375
           AVC    A +  N E R L
Sbjct: 361 AVCCICLAKYANNDELREL 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476391|ref|XP_002284536.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/379 (64%), Positives = 295/379 (77%), Gaps = 4/379 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTR 59
           M +PS ELH++++++ +PLLME+P N  + EHIIDIT   D SSSNS++D  S  LD  +
Sbjct: 1   MAIPSLELHSKSQSDIYPLLMEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQ 60

Query: 60  HEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           H+D  + S+R P SQPS S +  +    +F RR ++RRRRSPLNSGLWIS+EL LT+SQ+
Sbjct: 61  HDDRPASSARVPISQPSFSSSNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           +++VVVLS+ RHEHP APLF WIVGYA+GCVATLP+LYWR+R  NQ  E +S QSR  S 
Sbjct: 121 IASVVVLSLSRHEHPHAPLFTWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSF 180

Query: 180 RLNAPAAP-FSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
             N P  P FS+SV  TSE ED +  + + R  Q+   LS R KVLVEYFKMALDCFFAV
Sbjct: 181 HSNLPGGPTFSLSVTGTSEEEDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAV 240

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSS+++APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG 
Sbjct: 241 WFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGF 300

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL QTRGAT+ESI+ALPTYKFKLKK+R+ +DR+ +S  G+GGVVAAGTE+ERVISGED
Sbjct: 301 REDLTQTRGATSESINALPTYKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGED 360

Query: 359 AVCFCWTAGF--NHEFRYL 375
           AVC    A +  N E R L
Sbjct: 361 AVCCICLAKYANNDELREL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081927|emb|CBI20932.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/359 (65%), Positives = 278/359 (77%), Gaps = 4/359 (1%)

Query: 21  MERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSV 79
           ME+P N  + EHIIDIT   D SSSNS++D  S  LD  +H+D  + S+R P SQPS S 
Sbjct: 1   MEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQHDDRPASSARVPISQPSFSS 60

Query: 80  NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLF 139
           +  +    +F RR ++RRRRSPLNSGLWIS+EL LT+SQ++++VVVLS+ RHEHP APLF
Sbjct: 61  SNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQIIASVVVLSLSRHEHPHAPLF 120

Query: 140 EWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAP-FSISVPRTSEV 198
            WIVGYA+GCVATLP+LYWR+R  NQ  E +S QSR  S   N P  P FS+SV  TSE 
Sbjct: 121 TWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSFHSNLPGGPTFSLSVTGTSEE 180

Query: 199 EDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAP 258
           ED +  + + R  Q+   LS R KVLVEYFKMALDCFFAVWFVVGNVWIFGGHSS+++AP
Sbjct: 181 EDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSSSEAP 240

Query: 259 NLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPT 318
           NLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG REDL QTRGAT+ESI+ALPT
Sbjct: 241 NLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTQTRGATSESINALPT 300

Query: 319 YKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYL 375
           YKFKLKK+R+ +DR+ +S  G+GGVVAAGTE+ERVISGEDAVC    A +  N E R L
Sbjct: 301 YKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGEDAVCCICLAKYANNDELREL 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482955|ref|XP_002280466.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera] gi|297743322|emb|CBI36189.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/379 (59%), Positives = 273/379 (72%), Gaps = 34/379 (8%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           M +PS E H+ ++T  +PLLMER EN  + EHIIDIT  D +SS+S+HD     ++  +H
Sbjct: 1   MAIPSLEPHSGSQTYKYPLLMERTENHGDREHIIDITRNDDASSSSSHDDHHPVMNPPQH 60

Query: 61  EDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRR--GESRRRRSPLNSGLWISVELVLTLSQ 118
           E+  S S++ PT+Q  TS N  N+RN +F RR  G SRRRRSPLNSGLWISVELV+T+SQ
Sbjct: 61  EERPSSSTQTPTNQ--TSSNRLNSRNSSFMRRSDGYSRRRRSPLNSGLWISVELVVTVSQ 118

Query: 119 VVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
           +++++VVLS+ RHE+PRAPLF W+VGYA+GC ATLP+LYWRYR  NQ             
Sbjct: 119 IIASIVVLSLSRHENPRAPLFAWVVGYASGCFATLPILYWRYRTRNQ------------- 165

Query: 179 ARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
                     +ISV + SE        A+ R  +  G+   RF  +V++FKMALDCFFAV
Sbjct: 166 ----------TISVNQASETAG-----AATRRSRFVGIFRMRFSGMVDHFKMALDCFFAV 210

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSS +DAP LYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG 
Sbjct: 211 WFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGF 270

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL+QTRGA  ESIDALPTYKFKLKK+   +D++ +S  G+GGV+AAGTEKER ISGED
Sbjct: 271 REDLSQTRGAAPESIDALPTYKFKLKKNGDVDDQEVNSGAGEGGVLAAGTEKERAISGED 330

Query: 359 AVCFCWTAGF--NHEFRYL 375
           AVC    A +  N E R L
Sbjct: 331 AVCCICLAKYADNEELREL 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554344|ref|XP_003545507.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/381 (57%), Positives = 283/381 (74%), Gaps = 12/381 (3%)

Query: 3   VPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNST--HDRTSNGLDSTRH 60
           V S  L  E  + T PLLMER  ++N+ +H+I+I  +  +S++S   HDR  NG + T+H
Sbjct: 5   VVSLNLCLEGSSGTLPLLMERSGSLNSSQHVIEIAGSADASTSSASHHDRHFNGTNVTQH 64

Query: 61  EDGSSGSSRNPTSQPSTSVNGSNTRNVA----FTRRGESRRRRSPLNSGLWISVELVLTL 116
           E+  SG+ R P SQPS S    +  + +    F RRG++RR RSP++SGLWIS+ELVL L
Sbjct: 65  EERISGA-RMPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLL 123

Query: 117 SQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRN 176
           SQ+V++++VLS+ RHEHPR PLF+WI+GYA+GC ATLPLLYWRY   N + E +S QSR 
Sbjct: 124 SQIVASIIVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRYYHHNHMQEQESSQSRQ 183

Query: 177 SSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFF 236
           +S R+N P+     S  RT+  ED ++ +AS R  Q + +++ R K LVEYFK++LDCFF
Sbjct: 184 TSPRINDPSGTLLFS-SRTNGGEDGQSAVASSRSNQPSLLMNRRMKTLVEYFKISLDCFF 242

Query: 237 AVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSIL 296
           AVWFVVGNVWIFGGHSSA +APNLYRLCIVFLA SCIGYAMPFI C+TICCCLPCI+SIL
Sbjct: 243 AVWFVVGNVWIFGGHSSANEAPNLYRLCIVFLAFSCIGYAMPFIFCSTICCCLPCIISIL 302

Query: 297 GLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISG 356
           G+RED++Q RGAT+ESI+ALP YKFK+KK++   + + +S+  +GGVVAAGTEKE VISG
Sbjct: 303 GVREDMSQNRGATSESINALPIYKFKMKKNK--RNGNGNSAAAEGGVVAAGTEKEHVISG 360

Query: 357 EDAVCFCWTAGF--NHEFRYL 375
           EDAVC    A +  N E R L
Sbjct: 361 EDAVCCICLAKYENNDELREL 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550569|ref|XP_003543658.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/381 (54%), Positives = 275/381 (72%), Gaps = 6/381 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDV S   ++ T+T+  PLLME+PE  N  +H+IDIT    + + S  +   + +  T++
Sbjct: 1   MDVTSLGSNSNTQTDQHPLLMEQPETRNGHQHVIDITRNGEALTTSYRNDQHSEMHLTQN 60

Query: 61  EDGSSGSSRNPTSQP-STSVNGSNTRNVAFTRRGES--RRRRSPLNSGLWISVELVLTLS 117
           +D  +G +++ + Q  S+S    N+RN A  RRG+    R RSPLNSGLWISVELV+T+S
Sbjct: 61  QDQPAGDAQDSSHQTTSSSAPRLNSRNSASLRRGDGYGHRGRSPLNSGLWISVELVVTVS 120

Query: 118 QVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNS 177
           Q+++++VVLS+ R+E+P+APLF WIVGY +GCVATLP+LYWR+R  NQ +E D+ Q+   
Sbjct: 121 QIIASIVVLSLSRNENPQAPLFAWIVGYGSGCVATLPILYWRFRNRNQSNEQDTSQASQG 180

Query: 178 SARLNAPAAPF-SISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFF 236
           S+  N P   + SI V   S+ E+  A  ++ R     G  + R   LV++FKMALDCFF
Sbjct: 181 SSGSNPPDRSYTSIYVSHVSDEENGHATQSASRNTIMPGAFTSRLNGLVDHFKMALDCFF 240

Query: 237 AVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSIL 296
           AVWFVVGNVWIFGGH+S +DAP LYRLCIVFL  SCIGYAMPFILCATICCCLPCI+S+L
Sbjct: 241 AVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVL 300

Query: 297 GLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISG 356
           G+RED +Q RGAT ESI+ALP +KFKLK + + +D+D +S+I +GG++AAGTEKER+ISG
Sbjct: 301 GIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDANSAIDEGGILAAGTEKERMISG 360

Query: 357 EDAVCFCWTAGF--NHEFRYL 375
           EDAVC    A +  + E R L
Sbjct: 361 EDAVCCICLAKYADDDELREL 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802754|ref|XP_002869261.1| hypothetical protein ARALYDRAFT_328473 [Arabidopsis lyrata subsp. lyrata] gi|297315097|gb|EFH45520.1| hypothetical protein ARALYDRAFT_328473 [Arabidopsis lyrata subsp. lyrata]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/370 (61%), Positives = 269/370 (72%), Gaps = 12/370 (3%)

Query: 13  ETETFPLLMER-PEN-VNNCEHII-DITITD-VSSSNSTHDRTSNGLDSTRHEDGSSGSS 68
           + +TF   MER PEN ++  EHII DI     ++SS+S+HDR SN L+  +HED    S+
Sbjct: 15  QADTFSRFMERSPENNLSRNEHIIIDIPRNAAIASSSSSHDRISNVLEPLQHEDDRP-ST 73

Query: 69  RNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSV 128
             P S P  +   +++ +   +     RRRRSPLNSGLWIS+EL LT+ Q+++A+VVLS+
Sbjct: 74  VPPMSAPQPATATASSSSSMRSNPRSVRRRRSPLNSGLWISIELFLTVGQIIAAIVVLSL 133

Query: 129 FRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPF 188
            +HEHPRAPLF WIVGYA GCVATLPLLYWRY  SNQ SE DS Q R     LN  A PF
Sbjct: 134 SKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQDSGQHR---PNLNVAAGPF 190

Query: 189 SISVPRTSEVEDHRAPIASHRGGQNTGVLSP-RFKVLVEYFKMALDCFFAVWFVVGNVWI 247
           + S+ RTSE +  +    S R  +  G +S  R KV+VEYFKMALDCFFAVWFVVGNVWI
Sbjct: 191 AFSISRTSEGDGRQTNTTSSRVSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNVWI 250

Query: 248 FGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRG 307
           FGGHSSAA+APNLYRLC+VFL  SCIGYAMPFILC TICCCLPCI+SILG REDL Q RG
Sbjct: 251 FGGHSSAAEAPNLYRLCLVFLTFSCIGYAMPFILCTTICCCLPCIISILGYREDLTQPRG 310

Query: 308 ATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAG 367
           AT ESI+ALPT+KFKLKKSRSS D DN SS  +GGVVAAGT+ ER ISGEDAVC    A 
Sbjct: 311 ATPESINALPTHKFKLKKSRSSGD-DNGSSTSEGGVVAAGTDNERAISGEDAVCCICLAK 369

Query: 368 F--NHEFRYL 375
           +  N E R L
Sbjct: 370 YANNEELREL 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.925	0.790	0.529	3.8e-94
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.945	0.899	0.439	5.7e-75
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.286	0.323	0.389	6.8e-24
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.258	0.298	0.392	8.9e-23
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.581	0.551	0.273	1.8e-20
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.571	0.580	0.295	1.5e-18
TAIR|locus:2196633	179	AT1G15590 "AT1G15590" [Arabido	0.129	0.279	0.490	7e-16
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.390	0.387	0.287	5.4e-15
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.532	0.543	0.284	1.1e-12
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.310	0.349	0.320	5.9e-12

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 196/370 (52%), Positives = 230/370 (62%)

Query:    13 ETETFPLLMER-PEN-VNNCEHXXXXX--XXXXXXXXXXHDRTSNGLDSTRHEDGSSGSS 68
             + +TF   MER PEN ++  EH                 HDR SN L+  +HE+    S+
Sbjct:    15 QADTFSRFMERSPENNLSRNEHIIIDIPRNAAIASSSSSHDRISNVLEPLQHEE-ERPST 73

Query:    69 RNPTSQPSTSVNGSNTRNVAFTXXXXXXXXXXPLNSGLWISVEXXXXXXXXXXXXXXXXX 128
              +P + P  +   +++ +   +          PLNSGLWIS+E                 
Sbjct:    74 VSPMAAPQPATATASSSSSMRSNPRSVRRRRSPLNSGLWISIELFLTVGQIIAAIVVLSL 133

Query:   129 FRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPF 188
              +HEHPRAPLF WIVGYA GCVATLPLLYWRY  SNQ SE DS Q R +   LN  A PF
Sbjct:   134 SKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQDSGQHRPN---LNVAAGPF 190

Query:   189 SISVPRTSEVEDHRAPIASHRGGQNTGVLSP-RFKVLVEYFKMALDCFFAVWFVVGNVWI 247
             + S+ RTSE +  +    S RG +  G +S  R KV+VEYFKMALDCFFAVWFVVGNVWI
Sbjct:   191 AFSISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNVWI 250

Query:   248 FGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRG 307
             FGGHSSAA+APNLYRLC+VFL  SCIGYAMPFILC TICCCLPCI+SILG REDL Q RG
Sbjct:   251 FGGHSSAAEAPNLYRLCLVFLTFSCIGYAMPFILCTTICCCLPCIISILGYREDLTQPRG 310

Query:   308 ATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEKERVISGEDAVCFCWTAG 367
             AT ESI+ALPT+KFKL                +GGVVAAGT+ ER ISGEDAVC    A 
Sbjct:   311 ATPESINALPTHKFKLKKSRSNGDDNGSST-SEGGVVAAGTDNERAISGEDAVCCICLAK 369

Query:   368 F--NHEFRYL 375
             +  N E R L
Sbjct:   370 YANNEELREL 379

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 167/380 (43%), Positives = 219/380 (57%)

Query:     1 MDVPSAELHTETETETFPLLMERPENVNNCEHXXXXXXXXXXXXXXXHDRTSNGLDSTRH 60
             MDV S   +T T T+  PLLM+   N  +                   + T  G +S + 
Sbjct:     1 MDVSSIVRNT-TLTDQDPLLMDHG-NREHIVDITSNDEEDSSSRSSLDELTPQG-NSHQG 57

Query:    61 EDGSSGSSRNPTSQPSTSVNGSNTRNVAFTXXXXXXX--XXXPLNSGLWISVEXXXXXXX 118
             E+    SS N T Q  T  +    R  +              PLNSGLWISVE       
Sbjct:    58 EETVLSSS-NATQQHPTHPSPPQQRPTSSRRGDNGNGRRTRSPLNSGLWISVELVVTVAQ 116

Query:   119 XXXXXXXXXXFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
                        + EHP APLF W++GY  GC+ATLP+LYWR+R  N+ +  DS Q R +S
Sbjct:   117 IVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILYWRFRTYNRATGQDSSQ-RATS 175

Query:   179 ARLNAPAAPFS-ISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFA 237
             ++ N+ + P++ +SV + ++ E+     A+ R  Q    L  R   LV++FKMA+DCFFA
Sbjct:   176 SQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLVDHFKMAIDCFFA 235

Query:   238 VWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILG 297
             VWFVVGNVWIFGGHSS +D+P LYRLCI FL  SCIGYAMPFILCATICCCLPC++S+LG
Sbjct:   236 VWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYAMPFILCATICCCLPCLISVLG 295

Query:   298 LREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEKERVISGE 357
              RE+ +QTRGATAE+I+ALP Y+FK                G+GG +  G++K+R+ISGE
Sbjct:   296 FRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEE----GEGGFLLLGSQKKRLISGE 351

Query:   358 DA-VCFCWTA-GFNHEFRYL 375
             DA  C C T  G + + R L
Sbjct:   352 DASCCICLTRYGDDEQVREL 371

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
 Identities = 44/113 (38%), Positives = 67/113 (59%)

Query:   212 QNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGH-SSAADAPNLYRLCIVFLAI 270
             Q  G    R   L+   + +L+ FFA+WFV+GNVW+F     S   AP L+ LC+  LA 
Sbjct:   163 QQRGREETRSSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAW 222

Query:   271 SCIGYAMPFILCATICCCLPCIVSILGLREDLAQT-RGATAESIDALPTYKFK 322
             + I Y+ PF+L   +CC +P I S+LG   ++  + R A+ + I +LP++KFK
Sbjct:   223 NAICYSFPFLLFLFLCCLVPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFK 275

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
 Identities = 40/102 (39%), Positives = 65/102 (63%)

Query:   224 LVEYFKMALDCFFAVWFVVGNVWIFGGH-SSAADAPNLYRLCIVFLAISCIGYAMPFILC 282
             L+   + +L+ FFA+WFV+GNVW+F     S   AP L+ LCI  LA + + Y+ PF+L 
Sbjct:   172 LMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISLLAWNALCYSFPFLLF 231

Query:   283 ATICCCLPCIVSILGLREDLAQT-RGATAESIDALPTYKFKL 323
               +CC +P + S LG   ++  + +GA+ + I +LP++K+KL
Sbjct:   232 LLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKL 273

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 68/249 (27%), Positives = 113/249 (45%)

Query:   130 RHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFS 189
             R EHP  PL  W++GYA  CV  +  +   YR+ N+       +  N +     P +  S
Sbjct:   123 RKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNR-------RRTNRTTTTTPPRSRSS 175

Query:   190 ISVPRTSEVEDHRAPIASHRGGQNT--GVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWI 247
              S   +S +E+       + G Q+   G L      + ++ + A   F  +W+++G  W+
Sbjct:   176 SSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWV 235

Query:   248 F-GGHSSAADAPNLYRLCIVFLA------ISCIGYAMPFILCATICCCLPCIVSILGLRE 300
               GG   A ++P +Y L IVFL       + C+  A+  ++   +CCCLPCI+++L    
Sbjct:   236 SAGGQELAQESPRIYWLSIVFLGFDVFFVVFCV--ALACVIGIAVCCCLPCIIAVLYA-- 291

Query:   301 DLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEK--ERVISGED 358
              +A   GA+ E I+ L  +KF+                 +G +   GT+   E  +  ED
Sbjct:   292 -VADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQED 350

Query:   359 A-VCFCWTA 366
             A  C C +A
Sbjct:   351 AECCICLSA 359

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 73/247 (29%), Positives = 112/247 (45%)

Query:   132 EHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSIS 191
             E+P  PL  WI+GY   C+  +  +   YR+ N      S + R+ S R ++ ++  S S
Sbjct:    99 ENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRN------SRRRRDLSPRSSSSSSSSSSS 152

Query:   192 VPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIF-GG 250
             +    E E       S       G L        ++ + A      +W+V+G  W+  GG
Sbjct:   153 M---DEEEGLGLSRNSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGG 209

Query:   251 HSSAADAPNLYRLCIVFLA------ISCIGYAMPFILCATICCCLPCIVSILGLREDLAQ 304
                A  +P LY LCIVFL       + C+  A+  ++   +CCCLPCI+++L     +A+
Sbjct:   210 QELAQGSPQLYWLCIVFLGFDVFFVVFCV--ALACVIGIAVCCCLPCIIAVLYA---VAE 264

Query:   305 TRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGD-GGVVA-AGTEK--ERVISGEDA- 359
               GA+ E ID L  +KF+                GD GGV+   GT+   E  +  EDA 
Sbjct:   265 QEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE 324

Query:   360 VCFCWTA 366
              C C +A
Sbjct:   325 CCICLSA 331

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2196633 AT1G15590 "AT1G15590" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query:   215 GVLSP-RFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLC 264
             GV S  R   +++  KM  +CFF VW V+G +WI  GHSS++D P LYR C
Sbjct:   123 GVYSKTRTDRVMDALKMGNECFFVVWLVMGILWICYGHSSSSDTPKLYRFC 173

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
 Identities = 52/181 (28%), Positives = 85/181 (46%)

Query:   226 EYFKMALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLA------ISCIGYAMP 278
             ++ + A   F  +W+++G  W+  GG + ++D+P LY LCI+FL       + C+  A+ 
Sbjct:   204 KHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCV--ALA 261

Query:   279 FILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXI 338
              ++   +CCCLPCI++IL     +A   GA+   ID +P ++F                 
Sbjct:   262 CVIGLAVCCCLPCIIAILYA---VADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR--- 315

Query:   339 GDGGVVAAGTEK--ERVISGEDA---VCFC-WTAGF-------NHEFRYLVIDLSIFVYH 385
               G +   GT+   ER +S EDA   +C C +  G        NH F    ID  + +  
Sbjct:   316 --GIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINS 373

Query:   386 R 386
             R
Sbjct:   374 R 374

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 70/246 (28%), Positives = 97/246 (39%)

Query:   132 EHPRAPLFEWIVGYAAGC---VATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPF 188
             E P  PL  WI+GY   C   V  +   Y R R +N    P    S N  +   +     
Sbjct:   109 EDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANS-PPPSGEDSSNHESLSGSEDESD 167

Query:   189 SISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIF 248
               S+  T + +DH      H    NT                    F  VW+++G  W+ 
Sbjct:   168 GYSINNTDD-DDHGTSFTKHLESANT-------------------MFSFVWWIIGFYWVT 207

Query:   249 GGHSSAADA-PNLYRLCIVFLAISC----IGYAMPFILCATICCCLPCIVSILGLREDLA 303
                 + A + P LY LC+ FLA       I  A+  ++   +CCCLPCI++IL     LA
Sbjct:   208 ADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYA---LA 264

Query:   304 QTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAA-GTEK--ERVISGEDA- 359
                GA  E I+ L   KFK                  GG++    TE   ER++  EDA 
Sbjct:   265 DQEGAPDEEIERL--LKFKFLTVKNSEKVNGEIRETQGGIMTGLDTESQTERMLLSEDAE 322

Query:   360 --VCFC 363
               +C C
Sbjct:   323 CSICLC 328

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 43/134 (32%), Positives = 62/134 (46%)

Query:   238 VWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCA-----TICCCLPC 291
             VW++VG  W+  GG     +A +LY L  VFLA   + +A+  ++ A      +CCCLPC
Sbjct:   168 VWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFD-VFFAIFCVVLACLIGIALCCCLPC 226

Query:   292 IVSILGLREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIG-DGGVVAAGTEK 350
             I+++L     +A   GA+   +  LP Y+F                I  D      G E 
Sbjct:   227 IIALLYA---VAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNE- 282

Query:   351 ERVISGEDA-VCFC 363
              RV+  EDA  C C
Sbjct:   283 -RVLLPEDADCCIC 295

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.25.1 hypothetical protein (406 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.24
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.72
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.46
PHA02929	238	N1R/p28-like protein; Provisional	96.32
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.18
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	94.86
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	94.24
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	92.77
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	92.47
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	91.07
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	90.77
PF14634	44	zf-RING_5: zinc-RING finger domain	89.16
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	87.45
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	86.95
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	84.35
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	84.27
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	83.88
PHA02926	242	zinc finger-like protein; Provisional	82.19
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	81.4
KOG4445	368	consensus Uncharacterized conserved protein, conta	80.75

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=4.9e-12  Score=126.79  Aligned_cols=54  Identities=13%  Similarity=0.227  Sum_probs=45.7

Q ss_pred             hhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCcc
Q 016582          304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLSI  381 (387)
Q Consensus       304 ~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~F  381 (387)
                      +.+++.|..+.+||.++|+..+.+++                            ..+|+|||++|  ||+||.|||+|.|
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~----------------------------~~~CaIClEdY~~GdklRiLPC~H~F  254 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDA----------------------------TDTCAICLEDYEKGDKLRILPCSHKF  254 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCC----------------------------CceEEEeecccccCCeeeEecCCCch
Confidence            55789999999999999998654311                            13699999999  9999999999999


Q ss_pred             cccc
Q 016582          382 FVYH  385 (387)
Q Consensus       382 Hv~h  385 (387)
                      |+-+
T Consensus       255 H~~C  258 (348)
T KOG4628|consen  255 HVNC  258 (348)
T ss_pred             hhcc
Confidence            9865

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=6.1e-06  Score=81.90  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             ceecccccch--hhhhhhcCCCCcccccc
Q 016582          359 AVCFCWTAGF--NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       359 aeCcICLs~Y--GeELR~LPC~H~FHv~h  385 (387)
                      .||+||++.|  ||++|.|||+|.||+.+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~C  352 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGC  352 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhH
Confidence            5899999999  99999999999999865

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.46  E-value=2.6e-05  Score=55.66  Aligned_cols=25  Identities=12%  Similarity=0.028  Sum_probs=23.2

Q ss_pred             eecccccch--hhhhhhcCCCCccccc
Q 016582          360 VCFCWTAGF--NHEFRYLVIDLSIFVY  384 (387)
Q Consensus       360 eCcICLs~Y--GeELR~LPC~H~FHv~  384 (387)
                      +|.||+.+|  ++.+..|||+|.||..
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~   28 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRS   28 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHH
Confidence            699999999  8999999999999964

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=96.32  E-value=0.0013  Score=63.81  Aligned_cols=56  Identities=11%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             hhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch-hhhh-----hhc-C
Q 016582          304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF-NHEF-----RYL-V  376 (387)
Q Consensus       304 ~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y-GeEL-----R~L-P  376 (387)
                      ..+|-+++-|+.||+.-.+-.+..+                          ..++.+|+||++.+ .++.     ..| |
T Consensus       146 ~k~~~~~~~i~~lp~vl~~~e~~~~--------------------------~~~~~eC~ICle~~~~~~~~~~~~~vl~~  199 (238)
T PHA02929        146 KKGKNYKKFLKTIPSVLSEYEKLYN--------------------------RSKDKECAICMEKVYDKEIKNMYFGILSN  199 (238)
T ss_pred             HhcchhHHHHHhcchhhhhhhhhhc--------------------------CCCCCCCccCCcccccCccccccceecCC
Confidence            4567899999999988655322110                          02456899999998 5443     345 5


Q ss_pred             CCCcccccc
Q 016582          377 IDLSIFVYH  385 (387)
Q Consensus       377 C~H~FHv~h  385 (387)
                      |+|.||..+
T Consensus       200 C~H~FC~~C  208 (238)
T PHA02929        200 CNHVFCIEC  208 (238)
T ss_pred             CCCcccHHH
Confidence            999999754

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=0.0051  Score=56.85  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             ccccCCCCceecccccch--hhhhhhcCCCCcccc
Q 016582          351 ERVISGEDAVCFCWTAGF--NHEFRYLVIDLSIFV  383 (387)
Q Consensus       351 Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~FHv  383 (387)
                      |-+|+.+.-||.|||++.  |+.+-.|||-..||+
T Consensus       170 dDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  170 DDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            446666777999999999  999999999998875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.86  E-value=0.0096  Score=47.42  Aligned_cols=27  Identities=7%  Similarity=0.016  Sum_probs=19.2

Q ss_pred             Cceecccccch----------hh--hhhhcCCCCccccc
Q 016582          358 DAVCFCWTAGF----------NH--EFRYLVIDLSIFVY  384 (387)
Q Consensus       358 DaeCcICLs~Y----------Ge--ELR~LPC~H~FHv~  384 (387)
                      +..|+||+.+|          ++  .+...+|+|.||.-
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~   57 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFH   57 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHH
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHH
Confidence            34599999999          22  33445899999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=94.24  E-value=0.014  Score=39.62  Aligned_cols=25  Identities=12%  Similarity=0.022  Sum_probs=21.0

Q ss_pred             eecccccchhhhhhhcCCCCccccc
Q 016582          360 VCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       360 eCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      +|.||+..+.+.+..+||+|.||..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~   25 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRS   25 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHH
Confidence            4999999997777777899999864

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.77  E-value=0.03  Score=59.80  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=29.1

Q ss_pred             cccccCCCCceecccccch--hhh--hhhcCCCCcccccc
Q 016582          350 KERVISGEDAVCFCWTAGF--NHE--FRYLVIDLSIFVYH  385 (387)
Q Consensus       350 ~Er~ls~EDaeCcICLs~Y--GeE--LR~LPC~H~FHv~h  385 (387)
                      +|+.+-..|..|.||++..  +++  .+.|||+|.||.-+
T Consensus       283 ~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~C  322 (543)
T KOG0802|consen  283 EERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSC  322 (543)
T ss_pred             HHhhhhhcCCeeeeechhhccccccccceeecccchHHHH
Confidence            4455566789999999999  554  99999999999753

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.47  E-value=0.032  Score=38.75  Aligned_cols=24  Identities=17%  Similarity=0.073  Sum_probs=20.2

Q ss_pred             ecccccchhhhhhhcCCCCccccc
Q 016582          361 CFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       361 CcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      |.||++.|.+..+.+||+|.|...
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~   24 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRD   24 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHH
T ss_pred             CCcCCccccCCCEEecCCCcchHH
Confidence            889999995556999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=91.07  E-value=0.062  Score=35.05  Aligned_cols=23  Identities=9%  Similarity=-0.084  Sum_probs=18.5

Q ss_pred             ecccccchhhhhhhcCCCCccccc
Q 016582          361 CFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       361 CcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      |.||+.. ......+||+|.||..
T Consensus         1 C~iC~~~-~~~~~~~~C~H~~c~~   23 (39)
T smart00184        1 CPICLEE-LKDPVVLPCGHTFCRS   23 (39)
T ss_pred             CCcCccC-CCCcEEecCCChHHHH
Confidence            6788877 5678889999999853

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=90.77  E-value=0.091  Score=54.19  Aligned_cols=35  Identities=11%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             cccccCCCCceecccccch---h-h--------hhhhcCCCCccccc
Q 016582          350 KERVISGEDAVCFCWTAGF---N-H--------EFRYLVIDLSIFVY  384 (387)
Q Consensus       350 ~Er~ls~EDaeCcICLs~Y---G-e--------ELR~LPC~H~FHv~  384 (387)
                      .|..+...|-.|.||.++.   | +        +=+.|||+|.||--
T Consensus       279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~  325 (491)
T COG5243         279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLH  325 (491)
T ss_pred             hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHH
Confidence            3556677899999999994   3 2        33899999999953

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=89.16  E-value=0.11  Score=37.23  Aligned_cols=25  Identities=8%  Similarity=-0.023  Sum_probs=21.1

Q ss_pred             eecccccch--hhhhhhcCCCCccccc
Q 016582          360 VCFCWTAGF--NHEFRYLVIDLSIFVY  384 (387)
Q Consensus       360 eCcICLs~Y--GeELR~LPC~H~FHv~  384 (387)
                      +|.||..+|  ....+.|+|+|.|...
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~   27 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEK   27 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHH
Confidence            499999999  5688999999998643

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=87.45  E-value=0.15  Score=35.36  Aligned_cols=23  Identities=9%  Similarity=-0.039  Sum_probs=18.7

Q ss_pred             ecccccchhhhhhhcCCCCcccc
Q 016582          361 CFCWTAGFNHEFRYLVIDLSIFV  383 (387)
Q Consensus       361 CcICLs~YGeELR~LPC~H~FHv  383 (387)
                      |.||++.+.+-+..+||+|.|..
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~   23 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCK   23 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEH
T ss_pred             CCCCCCcccCcCEECCCCCchhH
Confidence            88999999667789999999864

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.95  E-value=0.17  Score=50.31  Aligned_cols=30  Identities=13%  Similarity=0.135  Sum_probs=25.2

Q ss_pred             CCCceecccccch--h-------hhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGF--N-------HEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~Y--G-------eELR~LPC~H~FHv~h  385 (387)
                      -+|..|+||..++  .       |++..|-|+|.||-++
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfC  260 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFC  260 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHh
Confidence            3678999999999  2       2789999999999775

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=84.35  E-value=0.24  Score=36.12  Aligned_cols=25  Identities=16%  Similarity=0.037  Sum_probs=18.0

Q ss_pred             CCceecccccchhhhhhhcCCCCc-cc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLS-IF  382 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~-FH  382 (387)
                      ||..|.||++...+ .-.+||+|. |-
T Consensus         1 ~~~~C~iC~~~~~~-~~~~pCgH~~~C   26 (50)
T PF13920_consen    1 EDEECPICFENPRD-VVLLPCGHLCFC   26 (50)
T ss_dssp             -HSB-TTTSSSBSS-EEEETTCEEEEE
T ss_pred             CcCCCccCCccCCc-eEEeCCCChHHH
Confidence            45689999999832 677899998 53

...

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=84.27  E-value=0.3  Score=35.53  Aligned_cols=20  Identities=15%  Similarity=0.112  Sum_probs=9.6

Q ss_pred             ecccccch-h--hhhhhcCCCCcc
Q 016582          361 CFCWTAGF-N--HEFRYLVIDLSI  381 (387)
Q Consensus       361 CcICLs~Y-G--eELR~LPC~H~F  381 (387)
                      |.||.+ | .  ..=+.|||+|.|
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~   23 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF   23 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH
Confidence            899999 9 3  234679999976

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=83.88  E-value=0.36  Score=39.48  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=25.3

Q ss_pred             CCCceecccccch-hhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGF-NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~Y-GeELR~LPC~H~FHv~h  385 (387)
                      .++..|.+|-... +..+-..||+|.||..+
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C  106 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSC  106 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEeccc
Confidence            4556799999999 77889999999988765

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA02926 zinc finger-like protein; Provisional

Probab=82.19  E-value=0.45  Score=46.26  Aligned_cols=29  Identities=10%  Similarity=0.049  Sum_probs=19.9

Q ss_pred             CCceecccccch-hh------hhhhcC-CCCcccccc
Q 016582          357 EDAVCFCWTAGF-NH------EFRYLV-IDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y-Ge------ELR~LP-C~H~FHv~h  385 (387)
                      +|.+|+||++.- .-      ..-.|| |+|.|...+
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~C  205 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITC  205 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHH
Confidence            567899999875 21      123564 999997543

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=81.40  E-value=0.52  Score=33.76  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=14.3

Q ss_pred             ecccccchhhhhhhcCCCCcc
Q 016582          361 CFCWTAGFNHEFRYLVIDLSI  381 (387)
Q Consensus       361 CcICLs~YGeELR~LPC~H~F  381 (387)
                      |.||+.-|.+-+. |+|+|.|
T Consensus         1 CpiC~~~~~~Pv~-l~CGH~F   20 (42)
T PF15227_consen    1 CPICLDLFKDPVS-LPCGHSF   20 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEE
T ss_pred             CCccchhhCCccc-cCCcCHH
Confidence            8899998855444 8999987

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=80.75  E-value=0.29  Score=49.39  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             eecccccch--hhhhhhcCCCCcccccc
Q 016582          360 VCFCWTAGF--NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       360 eCcICLs~Y--GeELR~LPC~H~FHv~h  385 (387)
                      .|.|||-.|  ++++-.-+|.|+||-|+
T Consensus       117 qCvICLygfa~~~~ft~T~C~Hy~H~~C  144 (368)
T KOG4445|consen  117 QCVICLYGFASSPAFTVTACDHYMHFAC  144 (368)
T ss_pred             ceEEEEEeecCCCceeeehhHHHHHHHH
Confidence            599999999  99999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 168 EPDSVQSRNSSARLNAP-AAPFSISVPRTSE 197
           E  +++   +S +L A  +AP ++++  T E
Sbjct: 18  EKQALKKLQASLKLYADDSAP-ALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.78
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.67
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.62
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.57
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.27
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.17
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.14
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.94
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.72
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	96.7
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	96.63
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	96.55
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	96.39
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.29
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	96.26
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.99
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	95.63
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	95.6
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	95.58
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	95.42
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	95.42
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	95.23
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	95.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	95.11
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.09
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	95.01
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	95.0
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	94.67
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	94.63
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	94.53
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	94.3
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	94.1
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	94.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	93.43
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	93.21
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	93.04
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	92.84
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	91.37
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	91.14
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	91.1
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	90.81
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	90.79
2ea5_A	68	Cell growth regulator with ring finger domain prot	90.04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	89.54
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	89.54
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	89.45
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	89.37
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	88.56
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	88.46
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	88.35
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	87.39
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	86.07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	84.84
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	81.43

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=87.74  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=45.6

Q ss_pred             hhhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCc
Q 016582          303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLS  380 (387)
Q Consensus       303 ~~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~  380 (387)
                      ...+|+|++.|++||.++|+.....                           ..++.+|.||+.+|  |+.++.|||+|.
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~---------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~   64 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGA---------------------------VGQEMCCPICCSEYVKGDVATELPCHHY   64 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSS---------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred             cCCCCCCHHHHHhCCCeeecccccc---------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence            3578999999999999999764321                           12566899999999  889999999999


Q ss_pred             ccccc
Q 016582          381 IFVYH  385 (387)
Q Consensus       381 FHv~h  385 (387)
                      ||..+
T Consensus        65 Fh~~C   69 (91)
T 2l0b_A           65 FHKPC   69 (91)
T ss_dssp             EEHHH
T ss_pred             HHHHH
Confidence            99653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=3.3e-09  Score=81.70  Aligned_cols=49  Identities=20%  Similarity=0.426  Sum_probs=39.7

Q ss_pred             cHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCcccccc
Q 016582          309 TAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       309 S~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~FHv~h  385 (387)
                      |.+.|++||+++|+..+..                            .++.+|.||+.+|  ++.++.|||+|.||...
T Consensus         2 s~~~i~~lp~~~~~~~~~~----------------------------~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~C   52 (75)
T 1x4j_A            2 SSGSSGQLPSYRFNPNNHQ----------------------------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKC   52 (75)
T ss_dssp             CCCCCSSCCCEEBCSSSCS----------------------------SSCCEETTTTEECCBTCEEEEETTTEEEETTH
T ss_pred             cHhhHhhCCcEEecCcccc----------------------------CCCCCCeECCcccCCCCeEEEECCCCHhHHHH
Confidence            5678999999999864321                            2456899999999  78899999999999753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.62  E-value=1.1e-05  Score=57.91  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             CCceecccccch--hhhhhhcC-CCCccccc
Q 016582          357 EDAVCFCWTAGF--NHEFRYLV-IDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~Y--GeELR~LP-C~H~FHv~  384 (387)
                      ++.+|.||+++|  |++++.|| |+|.||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~   34 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAE   34 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTT
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHH
Confidence            566899999999  88899999 99999964

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.60  E-value=1.5e-05  Score=61.21  Aligned_cols=30  Identities=13%  Similarity=0.157  Sum_probs=25.9

Q ss_pred             CCCceecccccch--hhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..|  ++.++.|||+|.||...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~C   44 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSC   44 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTT
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHH
Confidence            4677899999999  67889999999999754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.57  E-value=1.7e-05  Score=59.50  Aligned_cols=29  Identities=10%  Similarity=0.053  Sum_probs=25.3

Q ss_pred             CCCceecccccch--hhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|  ++.++.|||+|.||..
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~   42 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQV   42 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHH
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHH
Confidence            3567899999999  7889999999999964

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=2e-05  Score=59.94  Aligned_cols=29  Identities=10%  Similarity=0.123  Sum_probs=25.4

Q ss_pred             CCCceecccccch--hhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|  ++.++.|||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~   43 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRK   43 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHH
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHH
Confidence            3567899999999  7889999999999964

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.27  E-value=5e-05  Score=54.19  Aligned_cols=28  Identities=7%  Similarity=-0.087  Sum_probs=23.5

Q ss_pred             CCceecccccch---hhhhhhcCCCCccccc
Q 016582          357 EDAVCFCWTAGF---NHEFRYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~Y---GeELR~LPC~H~FHv~  384 (387)
                      ++.+|.||++.|   ++..+.|||+|.||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~   34 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRT   34 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETT
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHH
Confidence            456899999999   3568899999999864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=8.7e-05  Score=58.89  Aligned_cols=29  Identities=3%  Similarity=-0.047  Sum_probs=24.0

Q ss_pred             CCCceecccccch--hhhhhhcCCC-----Ccccccc
Q 016582          356 GEDAVCFCWTAGF--NHEFRYLVID-----LSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~Y--GeELR~LPC~-----H~FHv~h  385 (387)
                      .++.+|.|||++|  ++.| .+||+     |.||...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~C   48 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQAC   48 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTH
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHH
Confidence            4667899999999  6777 69997     9999754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.14  E-value=9.5e-05  Score=60.62  Aligned_cols=29  Identities=7%  Similarity=0.049  Sum_probs=22.2

Q ss_pred             CCceecccccch--hh---------------hhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF--NH---------------EFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y--Ge---------------ELR~LPC~H~FHv~h  385 (387)
                      +|.+|+|||+.|  ++               .++.|||+|.||..+
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~C   69 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC   69 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHH
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHH
Confidence            456899999999  32               344789999999653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.07  E-value=0.00011  Score=61.26  Aligned_cols=29  Identities=7%  Similarity=-0.003  Sum_probs=22.5

Q ss_pred             CCceecccccch-hh----------------hhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF-NH----------------EFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y-Ge----------------ELR~LPC~H~FHv~h  385 (387)
                      ++.+|+||+..| +.                .++.|||+|.||..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~C   81 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC   81 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHH
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHH
Confidence            566899999998 22                267799999999753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.94  E-value=0.00015  Score=54.04  Aligned_cols=30  Identities=7%  Similarity=-0.208  Sum_probs=24.4

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..|.+..+.|||+|.||...
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~C   32 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVC   32 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTH
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHH
Confidence            356689999999966668899999998653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.00052  Score=50.70  Aligned_cols=29  Identities=7%  Similarity=-0.015  Sum_probs=22.8

Q ss_pred             CCCceecccccch-hh-----hhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGF-NH-----EFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~Y-Ge-----ELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..| ..     .+..|||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~   47 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ   47 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHH
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHH
Confidence            4677899999999 32     23778999999864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=96.70  E-value=0.00046  Score=51.48  Aligned_cols=29  Identities=7%  Similarity=0.015  Sum_probs=23.1

Q ss_pred             CCCceecccccchhh------hhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNH------EFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGe------ELR~LPC~H~FHv~  384 (387)
                      .++.+|.||++.|.+      .+..+||+|.||..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~   42 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ   42 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHH
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHH
Confidence            466789999999932      34789999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=96.63  E-value=0.00053  Score=49.89  Aligned_cols=28  Identities=7%  Similarity=-0.013  Sum_probs=22.2

Q ss_pred             CCceecccccch-h-----hhhhhcCCCCccccc
Q 016582          357 EDAVCFCWTAGF-N-----HEFRYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~Y-G-----eELR~LPC~H~FHv~  384 (387)
                      ++.+|.||++.| .     +.+..+||+|.||..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~   35 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ   35 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHH
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHH
Confidence            567899999999 2     234788999999864

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.55  E-value=0.00031  Score=54.97  Aligned_cols=25  Identities=12%  Similarity=-0.000  Sum_probs=17.8

Q ss_pred             eecccccch--hhhhhhcC-CCCccccc
Q 016582          360 VCFCWTAGF--NHEFRYLV-IDLSIFVY  384 (387)
Q Consensus       360 eCcICLs~Y--GeELR~LP-C~H~FHv~  384 (387)
                      .|.||+++|  ++.++.|| |+|.||..
T Consensus        28 ~C~iC~~~~~~~~~~~~~~~C~H~FH~~   55 (81)
T 2ecl_A           28 ACLRCQAENKQEDCVVVWGECNHSFHNC   55 (81)
T ss_dssp             CCTTHHHHTCTTTCCEEEETTSCEEEHH
T ss_pred             cCcccccccCCCceEEEeCCCCCccChH
Confidence            355555555  45588887 99999974

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.39  E-value=0.00097  Score=51.63  Aligned_cols=30  Identities=17%  Similarity=0.110  Sum_probs=23.8

Q ss_pred             CCCceecccccch-hhh--hhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGF-NHE--FRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~Y-GeE--LR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..| .++  .+.|||+|.||..+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~C   45 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQC   45 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHH
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHH
Confidence            4567899999999 333  78899999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.29  E-value=0.0011  Score=49.52  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=22.9

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..|.+  ..|||+|.||...
T Consensus        13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~C   40 (70)
T 2ecn_A           13 TDEEECCICMDGRAD--LILPCAHSFCQKC   40 (70)
T ss_dssp             CCCCCCSSSCCSCCS--EEETTTEEECHHH
T ss_pred             CCCCCCeeCCcCccC--cccCCCCcccHHH
Confidence            356789999999944  7899999998643

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.26  E-value=0.0016  Score=46.54  Aligned_cols=28  Identities=7%  Similarity=-0.012  Sum_probs=21.8

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+. ..|||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~   40 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP-VIIECGHNFCKA   40 (58)
T ss_dssp             CCCCBCSSSCCBCSSC-CCCSSCCCCCHH
T ss_pred             ccCCCCccCCcccCcc-EeCCCCCccCHH
Confidence            4667899999999332 448999999864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.99  E-value=0.0012  Score=56.03  Aligned_cols=29  Identities=7%  Similarity=0.023  Sum_probs=1.1

Q ss_pred             CCceecccccch-h--------------h--hhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF-N--------------H--EFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y-G--------------e--ELR~LPC~H~FHv~h  385 (387)
                      ++..|+||+.+| .              +  .+..+||+|.||..+
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~C   92 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC   92 (117)
T ss_dssp             CC--------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHH
Confidence            566899999999 3              1  233468999999754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=95.63  E-value=0.0042  Score=47.13  Aligned_cols=28  Identities=14%  Similarity=0.024  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+- ..|||+|.|+..
T Consensus        10 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~   37 (79)
T 2egp_A           10 QEEVTCPICLELLTEP-LSLDCGHSLCRA   37 (79)
T ss_dssp             CCCCEETTTTEECSSC-CCCSSSCCCCHH
T ss_pred             ccCCCCcCCCcccCCe-eECCCCCHHHHH
Confidence            3677899999999332 348999999854

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.60  E-value=0.0031  Score=47.47  Aligned_cols=28  Identities=11%  Similarity=-0.094  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+. ..|||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~   40 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP-VSLPCKHVFCYL   40 (71)
T ss_dssp             SSCCBCSSSSSBCSSE-EEETTTEEEEHH
T ss_pred             CCCCCCccCCcccCCC-EEccCCCHHHHH
Confidence            3567899999999332 557999999864

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.58  E-value=0.0053  Score=46.75  Aligned_cols=29  Identities=14%  Similarity=0.001  Sum_probs=22.2

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..|.+. ..|||+|.||..+
T Consensus        17 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~C   45 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP-LSLDCGHSFCQAC   45 (85)
T ss_dssp             CCCCCCTTTCSCCSSC-BCCSSSCCBCTTH
T ss_pred             cCCCCCCCCCcccCCc-eeCCCCCHHHHHH
Confidence            4677899999999432 4579999998643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.0044  Score=47.73  Aligned_cols=28  Identities=11%  Similarity=0.045  Sum_probs=21.5

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+-+ .+||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~   40 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPV-VTKCRHYFCES   40 (81)
T ss_dssp             CCCSBCSSSCSBCCSEE-ECTTSCEEEHH
T ss_pred             CCCCCCcCCCchhcCee-EccCCCHhHHH
Confidence            35678999999993333 48999999864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=95.42  E-value=0.0051  Score=48.26  Aligned_cols=29  Identities=7%  Similarity=0.195  Sum_probs=23.7

Q ss_pred             CCCceecccccch-hhhhhhcC--CCCccccc
Q 016582          356 GEDAVCFCWTAGF-NHEFRYLV--IDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~Y-GeELR~LP--C~H~FHv~  384 (387)
                      .++.+|.||++.+ -++.+.+|  |+|.|...
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~   40 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRF   40 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHH
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHH
Confidence            4678899999999 66677777  99999754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.23  E-value=0.0044  Score=46.74  Aligned_cols=30  Identities=3%  Similarity=-0.187  Sum_probs=23.4

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .++.+|.||+..|.+.+..+||+|.||...
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~C   42 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHTFCKSC   42 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCEECHHH
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCHHHHHH
Confidence            456789999999955555569999998643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.17  E-value=0.0049  Score=46.95  Aligned_cols=28  Identities=11%  Similarity=-0.005  Sum_probs=21.9

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+.+ .|||+|.||..
T Consensus        17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~   44 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV-SADCNHSFCRA   44 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE-ECTTSCCBCHH
T ss_pred             ccCCCCcCCChhhCcce-eCCCCCHHHHH
Confidence            46778999999994333 58999999854

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.11  E-value=0.0041  Score=45.90  Aligned_cols=28  Identities=14%  Similarity=0.150  Sum_probs=21.0

Q ss_pred             CCceeccccc-ch-hhhh--hhcCCCCccccc
Q 016582          357 EDAVCFCWTA-GF-NHEF--RYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs-~Y-GeEL--R~LPC~H~FHv~  384 (387)
                      |+.+|.||+. .| +...  ..+||+|.|+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~   33 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCES   33 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHH
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHH
Confidence            5668999999 66 4432  468999999864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.09  E-value=0.0057  Score=46.56  Aligned_cols=29  Identities=7%  Similarity=0.031  Sum_probs=22.4

Q ss_pred             CCCceecccccchhhhhhhcC-CCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLV-IDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LP-C~H~FHv~h  385 (387)
                      .++..|.||+..|.+.+. || |+|.||...
T Consensus        13 ~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~C   42 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVV-IPCCGNSYCDEC   42 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEE-CSSSCCEECTTH
T ss_pred             CCCCCCcCCChHHhCCeE-cCCCCCHHHHHH
Confidence            467789999999944333 99 999998653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.01  E-value=0.0077  Score=43.70  Aligned_cols=28  Identities=11%  Similarity=-0.121  Sum_probs=22.2

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+ -+.|||+|.|+...
T Consensus         5 ~~~~C~IC~~~~~~-p~~l~CgH~fC~~C   32 (56)
T 1bor_A            5 QFLRCQQCQAEAKC-PKLLPCLHTLCSGC   32 (56)
T ss_dssp             CCSSCSSSCSSCBC-CSCSTTSCCSBTTT
T ss_pred             cCCCceEeCCccCC-eEEcCCCCcccHHH
Confidence            56689999999933 26799999998654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.00  E-value=0.0065  Score=44.96  Aligned_cols=28  Identities=4%  Similarity=-0.172  Sum_probs=21.8

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+-+. +||+|.||..
T Consensus        13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~   40 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQ-TECGHRFCES   40 (66)
T ss_dssp             CCCEECTTTCCEESSCCC-CSSSCCCCHH
T ss_pred             CcCCCCCCCChHhcCeeE-CCCCCHHHHH
Confidence            467899999999943333 8999999864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.67  E-value=0.012  Score=43.00  Aligned_cols=28  Identities=7%  Similarity=0.058  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+- ..|||+|.||..
T Consensus        18 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~   45 (63)
T 2ysj_A           18 QEEVICPICLDILQKP-VTIDCGHNFCLK   45 (63)
T ss_dssp             CCCCBCTTTCSBCSSC-EECTTSSEECHH
T ss_pred             ccCCCCCcCCchhCCe-EEeCCCCcchHH
Confidence            4678899999999432 346999999864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.63  E-value=0.0078  Score=47.86  Aligned_cols=27  Identities=4%  Similarity=0.053  Sum_probs=21.3

Q ss_pred             CCceecccccch-hhhhhhc-CCCCcccc
Q 016582          357 EDAVCFCWTAGF-NHEFRYL-VIDLSIFV  383 (387)
Q Consensus       357 EDaeCcICLs~Y-GeELR~L-PC~H~FHv  383 (387)
                      ++.+|.||+..| +.+...| ||+|.|-.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~   32 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCT   32 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccH
Confidence            456899999999 6666554 79999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.53  E-value=0.013  Score=43.81  Aligned_cols=28  Identities=7%  Similarity=0.058  Sum_probs=21.6

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+. ..|||+|.||..
T Consensus        18 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~   45 (73)
T 2ysl_A           18 QEEVICPICLDILQKP-VTIDCGHNFCLK   45 (73)
T ss_dssp             CCCCBCTTTCSBCSSE-EECTTCCEEEHH
T ss_pred             ccCCEeccCCcccCCe-EEcCCCChhhHH
Confidence            4677899999999432 346999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=94.30  E-value=0.0099  Score=48.77  Aligned_cols=29  Identities=7%  Similarity=0.015  Sum_probs=22.4

Q ss_pred             CCCceecccccchhh------hhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNH------EFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGe------ELR~LPC~H~FHv~  384 (387)
                      .++.+|.||+..|.+      ....+||+|.||..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~  104 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ  104 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHH
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHH
Confidence            456789999999922      23678999999975

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=94.10  E-value=0.0061  Score=49.20  Aligned_cols=29  Identities=10%  Similarity=-0.069  Sum_probs=23.3

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+-+..+||+|.||..+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~C   49 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLCCFSC   49 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHH
T ss_pred             CCCCCccCCccccCccccCCCCChhhHHH
Confidence            56789999999965565599999998643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=94.04  E-value=0.0063  Score=48.56  Aligned_cols=29  Identities=10%  Similarity=-0.096  Sum_probs=22.4

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++.+|.||+..|.+.+..+||+|.||..+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C   49 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLC   49 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHH
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHH
Confidence            45689999999955554469999998643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=93.43  E-value=0.013  Score=47.61  Aligned_cols=29  Identities=10%  Similarity=-0.024  Sum_probs=22.9

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+.+..+||+|.||..+
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C   42 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHSFCKTC   42 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCEEEHHH
T ss_pred             CcCCCccCChHHhCcCEeCCCCChhhHHH
Confidence            56789999999955566569999998643

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=93.21  E-value=0.0086  Score=52.18  Aligned_cols=29  Identities=3%  Similarity=-0.087  Sum_probs=23.2

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+.+..+||+|.||..+
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C   81 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADC   81 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHH
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHH
Confidence            45689999999965666679999998654

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.04  E-value=0.014  Score=47.16  Aligned_cols=28  Identities=7%  Similarity=-0.077  Sum_probs=20.7

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++.+|.||+..|.+-+ .+||+|.|+..+
T Consensus        20 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~C   47 (112)
T 1jm7_A           20 KILECPICLELIKEPV-STKCDHIFCKFC   47 (112)
T ss_dssp             HHTSCSSSCCCCSSCC-BCTTSCCCCSHH
T ss_pred             CCCCCcccChhhcCeE-ECCCCCHHHHHH
Confidence            3457999999993333 389999998643

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=92.84  E-value=0.014  Score=49.53  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=21.1

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|+||+..|-+ -..|||+|.||..+
T Consensus        52 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~C   79 (138)
T 4ayc_A           52 NELQCIICSEYFIE-AVTLNCAHSFCSYC   79 (138)
T ss_dssp             HHSBCTTTCSBCSS-EEEETTSCEEEHHH
T ss_pred             ccCCCcccCcccCC-ceECCCCCCccHHH
Confidence            34579999999932 24689999998643

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=91.37  E-value=0.02  Score=42.77  Aligned_cols=26  Identities=8%  Similarity=-0.184  Sum_probs=19.6

Q ss_pred             CCceecccccch-hhhhhhcCCCCccc
Q 016582          357 EDAVCFCWTAGF-NHEFRYLVIDLSIF  382 (387)
Q Consensus       357 EDaeCcICLs~Y-GeELR~LPC~H~FH  382 (387)
                      ++.+|.||++.. ..-+..|||+|.++
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~   33 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMA   33 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhh
Confidence            456899999999 54444569999854

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=91.14  E-value=0.067  Score=39.93  Aligned_cols=27  Identities=11%  Similarity=0.221  Sum_probs=19.9

Q ss_pred             CCceecccccchhhhhhhcCCC--C---ccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVID--L---SIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~--H---~FHv~  384 (387)
                      +..+|.||+++.+++| .+||+  |   .||..
T Consensus         5 ~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~   36 (60)
T 1vyx_A            5 DVPVCWICNEELGNER-FRACGCTGELENVHRS   36 (60)
T ss_dssp             SCCEETTTTEECSCCC-CCSCCCSSGGGSCCHH
T ss_pred             CCCEeEEeecCCCCce-ecCcCCCCchhhhHHH
Confidence            4568999999986677 69955  5   66643

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=91.10  E-value=0.069  Score=41.66  Aligned_cols=28  Identities=7%  Similarity=0.033  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcC-CCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLV-IDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LP-C~H~FHv~  384 (387)
                      .++..|.||+..|.+- ..|| |+|.|+..
T Consensus        11 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~   39 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA-VVIPCCGNSYCDE   39 (92)
T ss_dssp             CTTTEETTTTEECSSC-EECTTTCCEECHH
T ss_pred             CcCCCCCCCChhhcCc-eECCCCCCHHHHH
Confidence            4678999999998433 3689 99999754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=90.81  E-value=0.073  Score=53.34  Aligned_cols=122  Identities=10%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             chhhhHHHHHHHHHHHhhheeeeccCCCCCCchhhhHH------Hhhhhhhhhhcee-EEEeeeeccCCCCccccccccc
Q 016582          106 LWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIV------GYAAGCVATLPLL-YWRYRQSNQVSEPDSVQSRNSS  178 (387)
Q Consensus       106 ~wI~lelv~nlaqIvaaivVL~lSr~E~P~~PLr~WIv------GYa~gCv~~lpll-~~ryr~rn~~~~~~~~~~~q~~  178 (387)
                      -|..-|++-+|+|+.-.-...-+.+++.++.-+..=|.      +|-++|=-++-.+ +.+|..++..           +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~~~~~h-----------~  147 (381)
T 3k1l_B           79 DWLLEDFLDHLPKILPAQKAPTVPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQH-----------Y  147 (381)
T ss_dssp             TCCHHHHHHHHHHHCC------------CCCCHHHHHHHHHSCSSCEEEECGGGCEEEEEEETTEEEE-----------E
T ss_pred             chhHHHHHHhHHHhCCcccccccchhhcchhhHHHHHHHhcCccceEEEecCCccEEEeccccCccce-----------E
Confidence            39999999999999999888888888888665544333      3444443333322 1222111100           0


Q ss_pred             ccCCCCCCCCccccc--CCCccccCccccccCCCCCCCCccCcchhHHHHHHHhhHhHHHHHhheecc----eeeeccc
Q 016582          179 ARLNAPAAPFSISVP--RTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGN----VWIFGGH  251 (387)
Q Consensus       179 ~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~Lt~Ff~vWfVvG~----vWv~~~~  251 (387)
                      -.-+-+    .+.+.  +-++-........         ....++..++..|..+|+-+=-+|=++..    .||....
T Consensus       148 Lel~~~----~~~v~~h~LP~~~~~~e~l~---------k~~ssL~~v~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~  213 (381)
T 3k1l_B          148 LELKIP----SLLLLDHSLPDCVSLGEMLT---------KSAGNLEEALNLFRKLLEDLRPFYDNFMDIDELCHVLQPS  213 (381)
T ss_dssp             EEEETT----TCCEEEESSCTTSCHHHHHH---------HHCCSHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCBSS
T ss_pred             EEEecC----ceEEecccCCcchhHHHHhc---------CccccHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence            000000    01100  0010000000000         02245788999999999999999998865    5999554

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=90.79  E-value=0.044  Score=41.51  Aligned_cols=28  Identities=7%  Similarity=-0.165  Sum_probs=21.4

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++..|.||+..|.+-+ .+||+|.|+..
T Consensus         6 ~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~   33 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPV-IVSTGQTYERS   33 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE-EETTTEEEEHH
T ss_pred             cccCCCCCccccccCCE-EcCCCCeecHH
Confidence            46678999999994433 37999998754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.04  E-value=0.11  Score=39.28  Aligned_cols=29  Identities=10%  Similarity=0.123  Sum_probs=21.3

Q ss_pred             cCCCCceecccccchhhhhhhcCCCCc-ccc
Q 016582          354 ISGEDAVCFCWTAGFNHEFRYLVIDLS-IFV  383 (387)
Q Consensus       354 ls~EDaeCcICLs~YGeELR~LPC~H~-FHv  383 (387)
                      +..++.+|.||+...-+ ...|||+|. |-.
T Consensus        11 ~~~~~~~C~IC~~~~~~-~v~~pCgH~~~C~   40 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVN-WVLLPCRHTCLCD   40 (68)
T ss_dssp             SCCCSSCCSSSSSSCCC-CEETTTTBCCSCT
T ss_pred             cCCCCCCCCCcCcCCCC-EEEECCCChhhhH
Confidence            33467789999998732 566899998 543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=89.54  E-value=0.048  Score=47.41  Aligned_cols=28  Identities=7%  Similarity=0.064  Sum_probs=20.7

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+-+. |||+|.|+..+
T Consensus        77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~C  104 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVT-TECFHNVCKDC  104 (150)
T ss_dssp             HHTBCTTTSSBCSSEEE-CTTSCEEEHHH
T ss_pred             cCCEeecCChhhcCCEE-cCCCCchhHHH
Confidence            34679999999933333 89999998643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=89.54  E-value=0.046  Score=44.63  Aligned_cols=29  Identities=7%  Similarity=-0.098  Sum_probs=21.9

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .++..|.||+..|.+- ..|||+|.|+..+
T Consensus        13 ~~~~~C~iC~~~~~~p-~~~~CgH~fC~~C   41 (115)
T 3l11_A           13 LSECQCGICMEILVEP-VTLPCNHTLCKPC   41 (115)
T ss_dssp             HHHHBCTTTCSBCSSC-EECTTSCEECHHH
T ss_pred             CCCCCCccCCcccCce-eEcCCCCHHhHHH
Confidence            4577899999999432 3469999998653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.45  E-value=0.099  Score=40.92  Aligned_cols=27  Identities=4%  Similarity=0.092  Sum_probs=21.6

Q ss_pred             CCceecccccch--hhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF--NHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y--GeELR~LPC~H~FHv~h  385 (387)
                      .-.+|.||.+.+  |++-.  -|+|.||.+.
T Consensus        14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~C   42 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE--TCGIRMHLPC   42 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS--SSCCEECHHH
T ss_pred             CCCcCcchhhHcccCCccC--CCCchhhHHH
Confidence            346899999999  66544  8999999864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=89.37  E-value=0.05  Score=44.50  Aligned_cols=27  Identities=4%  Similarity=-0.071  Sum_probs=20.8

Q ss_pred             CCceecccccchhhhhhhcCCCCccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      ++..|.||+..|.+-+. +||+|.|+..
T Consensus        22 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~   48 (116)
T 1rmd_A           22 KSISCQICEHILADPVE-TSCKHLFCRI   48 (116)
T ss_dssp             HHTBCTTTCSBCSSEEE-CTTSCEEEHH
T ss_pred             CCCCCCCCCcHhcCcEE-cCCCCcccHH
Confidence            45689999999944333 8999999864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=88.56  E-value=0.099  Score=42.98  Aligned_cols=29  Identities=7%  Similarity=-0.181  Sum_probs=21.9

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+-+...||+|.|+..+
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~C   49 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNC   49 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTT
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHH
Confidence            56789999999955444339999998644

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=88.46  E-value=0.059  Score=44.63  Aligned_cols=28  Identities=14%  Similarity=0.105  Sum_probs=20.9

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ++..|.||+..|.+- ..|||+|.|+..+
T Consensus        51 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~C   78 (124)
T 3fl2_A           51 ETFQCICCQELVFRP-ITTVCQHNVCKDC   78 (124)
T ss_dssp             HHTBCTTTSSBCSSE-EECTTSCEEEHHH
T ss_pred             cCCCCCcCChHHcCc-EEeeCCCcccHHH
Confidence            456899999999433 3469999998643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=88.35  E-value=0.094  Score=43.19  Aligned_cols=27  Identities=4%  Similarity=-0.123  Sum_probs=20.8

Q ss_pred             CCceecccccchhhhhhhcCCCCccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      ++..|.||+..|.+- ..+||+|.|+..
T Consensus        17 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~   43 (118)
T 3hct_A           17 SKYECPICLMALREA-VQTPCGHRFCKA   43 (118)
T ss_dssp             GGGBCTTTCSBCSSE-EECTTSCEEEHH
T ss_pred             CCCCCCcCChhhcCe-EECCcCChhhHH
Confidence            567899999999333 347999999864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.39  E-value=0.093  Score=39.94  Aligned_cols=26  Identities=8%  Similarity=0.018  Sum_probs=19.8

Q ss_pred             CCceecccccchhhhhhhcCCCCc-ccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLS-IFV  383 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~-FHv  383 (387)
                      ++.+|.||+..+-+ ...|||+|. |..
T Consensus        24 ~~~~C~IC~~~~~~-~~~~pCgH~~~C~   50 (75)
T 2ecg_A           24 EEKLCKICMDRNIA-IVFVPCGHLVTCK   50 (75)
T ss_dssp             HHHSCSSSCSSCCC-BCCSSSCCCCBCH
T ss_pred             CCCCCCcCCCCCCC-EEEecCCCHHHHH
Confidence            56789999999832 345899998 754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=86.07  E-value=0.11  Score=39.51  Aligned_cols=26  Identities=8%  Similarity=0.018  Sum_probs=19.7

Q ss_pred             CCceecccccchhhhhhhcCCCCc-ccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLS-IFV  383 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~-FHv  383 (387)
                      ++..|.||+..+-+ ...|||+|. |..
T Consensus        23 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~   49 (74)
T 4ic3_A           23 EEKLCKICMDRNIA-IVFVPCGHLVTCK   49 (74)
T ss_dssp             HHTBCTTTSSSBCC-EEEETTCCBCCCH
T ss_pred             cCCCCCCCCCCCCC-EEEcCCCChhHHH
Confidence            56689999998833 335799998 764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=84.84  E-value=0.18  Score=50.92  Aligned_cols=27  Identities=4%  Similarity=-0.097  Sum_probs=21.2

Q ss_pred             CceecccccchhhhhhhcCCCCcccccc
Q 016582          358 DAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       358 DaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      +.+|+||++.+.+ ...+||+|.||..+
T Consensus       332 ~~~C~ICle~~~~-pv~lpCGH~FC~~C  358 (389)
T 2y1n_A          332 FQLCKICAENDKD-VKIEPCGHLMCTSC  358 (389)
T ss_dssp             SSBCTTTSSSBCC-EEEETTCCEECHHH
T ss_pred             CCCCCccCcCCCC-eEEeCCCChhhHHH
Confidence            4689999999822 46699999998654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=81.43  E-value=0.31  Score=41.86  Aligned_cols=28  Identities=7%  Similarity=0.138  Sum_probs=21.5

Q ss_pred             CCCceecccccchhhhhhhcCCCCccccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .++..|.||+..+-+-+. +||+|.|+..
T Consensus        29 ~~~~~C~IC~~~~~~pv~-~~CgH~FC~~   56 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQ-AQCGHRYCSF   56 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEE-CTTSCEEEHH
T ss_pred             CcCcCCCCCChhhcCcEE-CCCCCccCHH
Confidence            456789999999943333 7999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.04
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.19
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	96.83
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	96.59
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.52
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	95.24
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	95.07
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	94.39
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	91.32
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	91.28
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	91.09
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	83.67
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	82.62

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.04  E-value=3.7e-07  Score=66.08  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=25.2

Q ss_pred             CCceecccccch--hhhhhhcC-CCCcccccc
Q 016582          357 EDAVCFCWTAGF--NHEFRYLV-IDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y--GeELR~LP-C~H~FHv~h  385 (387)
                      |+.+|+|||++|  |++++.|| |+|.||...
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~C   35 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAEC   35 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTH
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHH
Confidence            567899999999  89999986 999999753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=4.2e-05  Score=54.11  Aligned_cols=25  Identities=12%  Similarity=0.152  Sum_probs=20.6

Q ss_pred             eecccccch--hh-hhhhcCCCCccccc
Q 016582          360 VCFCWTAGF--NH-EFRYLVIDLSIFVY  384 (387)
Q Consensus       360 eCcICLs~Y--Ge-ELR~LPC~H~FHv~  384 (387)
                      ||.|||++|  ++ .++.+||+|.||..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~   29 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRF   29 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHH
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchH
Confidence            799999999  33 45677999999964

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=96.83  E-value=9.9e-05  Score=54.58  Aligned_cols=26  Identities=8%  Similarity=-0.182  Sum_probs=22.1

Q ss_pred             ceecccccchhhhhhhcCCCCccccc
Q 016582          359 AVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       359 aeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      .+|+||++.+.+..+.+||+|.||..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~   31 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYV   31 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTT
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHH
Confidence            36999999995567889999999974

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00017  Score=52.90  Aligned_cols=29  Identities=14%  Similarity=0.045  Sum_probs=22.4

Q ss_pred             CCceecccccch--hh--hhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF--NH--EFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y--Ge--ELR~LPC~H~FHv~h  385 (387)
                      ||.+|.||++.+  +.  .+..+||+|.||...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~C   34 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESC   34 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHH
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHH
Confidence            567899999987  43  346679999999653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00023  Score=56.91  Aligned_cols=29  Identities=7%  Similarity=0.007  Sum_probs=21.8

Q ss_pred             CCceecccccch-h----------------hhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGF-N----------------HEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~Y-G----------------eELR~LPC~H~FHv~h  385 (387)
                      .|.+|.||++++ .                ..++.+||+|.||..+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~C   69 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC   69 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHH
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHH
Confidence            456799999987 2                1256789999999754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0022  Score=45.86  Aligned_cols=27  Identities=11%  Similarity=-0.146  Sum_probs=21.3

Q ss_pred             CceecccccchhhhhhhcCCCCcccccc
Q 016582          358 DAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       358 DaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      ..+|.||++.|.+ -+.|||+|.||...
T Consensus         6 ~l~C~IC~~~~~~-p~~lpCgH~fC~~C   32 (56)
T d1bora_           6 FLRCQQCQAEAKC-PKLLPCLHTLCSGC   32 (56)
T ss_dssp             CSSCSSSCSSCBC-CSCSTTSCCSBTTT
T ss_pred             CCCCcccCcccCC-CEEecCCCHHhHHH
Confidence            3589999999932 46799999998654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.002  Score=49.55  Aligned_cols=28  Identities=7%  Similarity=0.019  Sum_probs=20.0

Q ss_pred             Cceecccccch-hh----------------hhhhcCCCCcccccc
Q 016582          358 DAVCFCWTAGF-NH----------------EFRYLVIDLSIFVYH  385 (387)
Q Consensus       358 DaeCcICLs~Y-Ge----------------ELR~LPC~H~FHv~h  385 (387)
                      +.+|+||+.++ ..                .+..+||+|.||..+
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~C   65 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC   65 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHH
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHH
Confidence            34588988877 11                256789999999753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0031  Score=47.67  Aligned_cols=27  Identities=4%  Similarity=-0.083  Sum_probs=21.6

Q ss_pred             CCceecccccchhhhhhhcCCCCccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~  384 (387)
                      ++..|.||++.+.+ .+.|||+|.||..
T Consensus        22 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~   48 (79)
T d1fbva4          22 TFQLCKICAENDKD-VKIEPCGHLMCTS   48 (79)
T ss_dssp             CTTBCTTTSSSBCC-EECSSSCCEECHH
T ss_pred             CCCCCccCCCcCCC-eEEeCCCCeeeHH
Confidence            44679999998833 6789999999864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.004  Score=47.74  Aligned_cols=26  Identities=4%  Similarity=0.023  Sum_probs=20.6

Q ss_pred             ceecccccch-hhhh-hhcCCCCccccc
Q 016582          359 AVCFCWTAGF-NHEF-RYLVIDLSIFVY  384 (387)
Q Consensus       359 aeCcICLs~Y-GeEL-R~LPC~H~FHv~  384 (387)
                      .+|.||+++| +++. +.++|+|.|+..
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~   33 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTL   33 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHH
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCc
Confidence            4799999999 7665 445799998754

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.022  Score=44.35  Aligned_cols=26  Identities=8%  Similarity=-0.050  Sum_probs=20.1

Q ss_pred             ceecccccchhhhhhhcCCCCcccccc
Q 016582          359 AVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       359 aeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      .+|.||+..|.+-+ .+||+|.|+..+
T Consensus        22 l~CpIC~~~~~~pv-~~~CgH~fC~~C   47 (103)
T d1jm7a_          22 LECPICLELIKEPV-STKCDHIFCKFC   47 (103)
T ss_dssp             TSCSSSCCCCSSCC-BCTTSCCCCSHH
T ss_pred             cCCCccCchhCCeE-EcCCCCchhhHH
Confidence            46999999884444 489999998653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=91.28  E-value=0.026  Score=39.89  Aligned_cols=26  Identities=15%  Similarity=0.255  Sum_probs=18.5

Q ss_pred             CCceecccccch-hhhhhhcCC-----CCccccc
Q 016582          357 EDAVCFCWTAGF-NHEFRYLVI-----DLSIFVY  384 (387)
Q Consensus       357 EDaeCcICLs~Y-GeELR~LPC-----~H~FHv~  384 (387)
                      |+..|.||+++| ++.+  .||     .|.||..
T Consensus         5 d~~~C~IC~~~~~~~~~--~~c~c~~c~h~~H~~   36 (60)
T d1vyxa_           5 DVPVCWICNEELGNERF--RACGCTGELENVHRS   36 (60)
T ss_dssp             SCCEETTTTEECSCCCC--CSCCCSSGGGSCCHH
T ss_pred             CCCCCccCCccCCCcee--EecccCCCCCEEcHH
Confidence            567899999999 5433  454     3888854

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.022  Score=43.91  Aligned_cols=29  Identities=7%  Similarity=-0.181  Sum_probs=22.9

Q ss_pred             CCceecccccchhhhhhhcCCCCcccccc
Q 016582          357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH  385 (387)
Q Consensus       357 EDaeCcICLs~YGeELR~LPC~H~FHv~h  385 (387)
                      +..+|.||+..|.+-+...||+|.|+..+
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~C   49 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNC   49 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTT
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHH
Confidence            34579999999966666678999998754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.67  E-value=0.1  Score=38.39  Aligned_cols=27  Identities=7%  Similarity=-0.148  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFV  383 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv  383 (387)
                      +++..|.||+.-+.|-+ .|||+|.|-.
T Consensus         6 P~~l~CpIc~~~m~dPV-~~~cgh~fc~   32 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPV-IVSTGQTYER   32 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE-EETTTEEEEH
T ss_pred             CccCCCcCcCchhhCce-EccCCCcchH
Confidence            47788999999996656 5899998753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.62  E-value=0.15  Score=37.62  Aligned_cols=27  Identities=0%  Similarity=-0.325  Sum_probs=21.7

Q ss_pred             CCCceecccccchhhhhhhcCCCCcccc
Q 016582          356 GEDAVCFCWTAGFNHEFRYLVIDLSIFV  383 (387)
Q Consensus       356 ~EDaeCcICLs~YGeELR~LPC~H~FHv  383 (387)
                      +|+..|.||+.-+.|-+ .+||+|.|-.
T Consensus         5 P~~l~CpIc~~l~~dPv-~~~cGhtfc~   31 (80)
T d2c2la2           5 PDYLCGKISFELMREPC-ITPSGITYDR   31 (80)
T ss_dssp             CSTTBCTTTCSBCSSEE-ECSSCCEEET
T ss_pred             CccccCcCcCchhhhhc-ccCCcCeecH
Confidence            47788999998886666 5899998753