Citrus Sinensis ID: 016610

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccHHHHHHHccccccccccccccccEcccccccHHHHHHHHcccccccEEEcc
Coil and Loop (DISEMBL)
mgnnedgksfksekpsspppsdqgnihmytDWAAMQayygprvaippyynspiasghapqpymwgpaqpmmppygapyaaiystggvyahpavplgshahnhgvptspaavtplnteaptkssgnadRGLAKKLKGLDGLAMSIGnasaesaeggaeqrpsqseadgstdgsdgntvragqsrkkrsregtpiagkpvgpvlspgmptklelrnapgmnvkasptsvpqpcavlppetwiQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAqlgnkqeivlnedkrvtpvsteNLLSRvnnsgtvdrnmeegghlfeknsnsgaklhqlldasprtdavaag
Flexible Loop (DISEMBL)
mgnnedgksfksekpsspppsdQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTeaptkssgnadrGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSqseadgstdgsdgntvragqsrkkrsregtpiagkpvgpvlspgMPTKLELRNAPGMNVKASptsvpqpcavlppetwiqnerelkrerrkqsnresarrsrlrkqaeaeelsrkvdslidENASLKSEINQLSENSEKLRQENAALLEKLKsaqlgnkqeivlnedkrvtpvstenllsrvnnsgtvDRNMEEGGHLFEKNSNSGAKLhqlldasprtdavaag
Low Complexity Region (SEG)
MGNNEDGksfksekpsspppsDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWgpaqpmmppygapyaaIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNadrglakklkgldglaMsignasaesaeggaeQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Disordered region (IsUnstruct)
*************************IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPL***************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
******************************DWAAMQAYYGPRVAIPPY*N******HAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHP***********************************************************************************************************************************************************************************EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL********************************************************************PR***V***
Disordered Region (DISEMBL)
**********************QGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE*********DRGLAKKLKGLDGLAMSIGNA*******************************************TPIAGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNER*******************************KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDAS*********
Disordered Region (DISPRO)
************************NIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPT****************************************************************************************************PTKLELR*APG**VK*******************************************RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA**********************************************************LDASPRTD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
Q99089	411	Common plant regulatory f	N/A	no	0.961	0.902	0.509	1e-107
P42776	382	G-box-binding factor 3 OS	yes	no	0.909	0.918	0.544	1e-99
P42775	360	G-box-binding factor 2 OS	no	no	0.873	0.936	0.466	2e-78
Q99142	265	Transcriptional activator	N/A	no	0.569	0.830	0.516	3e-59
P42774	315	G-box-binding factor 1 OS	no	no	0.699	0.857	0.360	9e-37
Q99091	296	Light-inducible protein C	N/A	no	0.670	0.875	0.310	2e-23
P23922	349	Transcription factor HBP-	N/A	no	0.795	0.879	0.319	3e-19
P25032	354	DNA-binding protein EMBP-	N/A	no	0.189	0.206	0.589	2e-16
P24068	151	Ocs element-binding facto	N/A	no	0.215	0.549	0.395	8e-07
Q54Y73	834	Probable basic-leucine zi	yes	no	0.163	0.075	0.421	4e-06

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/426 (50%), Positives = 280/426 (65%), Gaps = 55/426 (12%)

Query: 1   MGNNEDGKSFKSEK---PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN +D K+ K EK   P  P   DQ N H+Y DWAAMQAYYGPRVA+PPY+N  +ASG 
Sbjct: 1   MGNTDDVKAVKPEKLSSPPPPAAPDQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQ 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           +P PYMWGP QP+MPPYG PYAA+Y+ GGVYAHP VPL              A +P++ +
Sbjct: 61  SPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPL--------------AASPMSMD 106

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
              KSSG  + GL KKLKG D LAMSIGN  A+S+EG  E+  SQS E +GS+DGS+ N+
Sbjct: 107 THAKSSGTNEHGLIKKLKGHDDLAMSIGNGKADSSEGEMERTLSQSKETEGSSDGSNENS 166

Query: 177 VRAGQSRKKRSREGTP----------------------------------IAGKPVGPVL 202
            RA  + +KR R+  P                                  +AGK VG V+
Sbjct: 167 KRAAVNGRKRGRDEAPNMIGEVKIETQSSVIPSPRAKSEKLLGITVATPMVAGKVVGTVV 226

Query: 203 SPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRS 262
           SP M + LEL+++P  +   SP    QP  ++P ++W+ N+R+LKRERRKQSNRESARRS
Sbjct: 227 SPSMTSSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARRS 286

Query: 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 322
           RLRKQAEAEEL+ KVDSL  EN +LK+EIN+L+  +EKL  +N+ LLE +K+AQ     +
Sbjct: 287 RLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQAERAAD 346

Query: 323 IVL--NEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 380
           + L  N +K+ + +ST NLLSRV+N+G+ DR+  E   ++EK + SGAKLHQLLDA+PRT
Sbjct: 347 VGLGNNNEKKASTLSTANLLSRVDNAGSGDRDEGE-SDVYEKTTKSGAKLHQLLDANPRT 405

Query: 381 DAVAAG 386
           DAVAAG
Sbjct: 406 DAVAAG 411

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score =  363 bits (933), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/395 (54%), Positives = 262/395 (66%), Gaps = 44/395 (11%)

Query: 11  KSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWGPAQP 69
           KS+KPSSPP  DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW P Q 
Sbjct: 13  KSDKPSSPP-VDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNP-QH 70

Query: 70  MMPPYGAPYAAIY-STGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADR 128
           MM PYGAPYAA+Y   GGVYAHP +P+GS       P      T L+ + PTKS+GN D 
Sbjct: 71  MMSPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDN 130

Query: 129 GLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSR 188
           GL KKLK  DGLAMS+GN + E+     ++  + SE DGSTDGSDGNT  A + + KRSR
Sbjct: 131 GLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSR 190

Query: 189 EGTPIA-GKPV----------------GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPC 231
           EGTP   GK +                G  L  G    L    +PG++  ++P  + Q  
Sbjct: 191 EGTPTKDGKQLVQASSFHSVSPSSGDTGVKLIQGSGAIL----SPGVSANSNPF-MSQSL 245

Query: 232 AVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 291
           A++PPETW+QNERELKRERRKQSNRESARRSRLRKQAE EEL+RKV++L  EN +L+SE+
Sbjct: 246 AMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSEL 305

Query: 292 NQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDR 351
           NQL+E S+KLR  NA LL+KLK ++           +KRV      N+LSRV NSG  D+
Sbjct: 306 NQLNEKSDKLRGANATLLDKLKCSE----------PEKRV----PANMLSRVKNSGAGDK 351

Query: 352 NMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG 386
           N  +G    + +SNS +KLHQLLD  PR  AVAAG
Sbjct: 352 NKNQG----DNDSNSTSKLHQLLDTKPRAKAVAAG 382

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 190/407 (46%), Positives = 235/407 (57%), Gaps = 70/407 (17%)

Query: 1   MGNNEDGK-SFKSEKPSSPPPSDQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
           MG+NE+G  +  S+KPS     +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct: 1   MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query: 59  PQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
           P PYMW    PMM PYGAPY      GGVYAHP V +GS        ++    TPL  +A
Sbjct: 61  PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query: 119 PTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEA--DGSTDGSDGNT 176
           P  S+GN+D G  KKLK  DGLAMSI N    SAE  + +  S   +  DGS++GSDGNT
Sbjct: 121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query: 177 VRA-------------GQSRKKRSREGTPIAG---KPVGPVLSPGMPTKLELRNAPGMNV 220
                               +  S+   P+ G   KP   + +P MPT +  +N+ GMN 
Sbjct: 181 TGGEQSRRKRRQQRSPSTGERPSSQNSLPLRGENEKPDVTMGTPVMPTAMSFQNSAGMN- 239

Query: 221 KASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 280
                 VPQP        W  NE+E+KRE+RKQSNRESARRSRLRKQAE E+LS KVD+L
Sbjct: 240 -----GVPQP--------W--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDAL 284

Query: 281 IDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLL 340
           + EN SL+S++ QL+  SEKLR EN A+L++LK+   G                 TENL+
Sbjct: 285 VAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATG----------------KTENLI 328

Query: 341 SRVNNSGTVDRNMEEGGHLFEKNSNSGAKL--HQLLDASPRTDAVAA 385
           SR      VD+N          NS SG+K   HQLL+ASP TD VAA
Sbjct: 329 SR------VDKN----------NSVSGSKTVQHQLLNASPITDPVAA 359

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/269 (51%), Positives = 166/269 (61%), Gaps = 49/269 (18%)

Query: 85  GGVYAHPAVPLGSHAHNHGVPTSPAAV-----TPLNTEAPTKSSGNADRGLAKKLKGLDG 139
           GGVYAHP VP+GSH   HG+ TSPA         L+ +A  KSS N+DRGL         
Sbjct: 3   GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGL--------- 53

Query: 140 LAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNTVRAGQSRKKRSREGTP------ 192
           LAMS+GN SA++ EGGA+   SQS + + STDGSD N     +  KKRSRE TP      
Sbjct: 54  LAMSLGNGSADNIEGGADHGNSQSGDTEDSTDGSDTNGAGVSERSKKRSRETTPDNSGDS 113

Query: 193 ----------------------------IAGKPVGPVLSPGMPTKLELRNAPGMNVKASP 224
                                       +  K +G VLSP M T LE+RN    ++KASP
Sbjct: 114 KSHLRRCQPTGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKASP 173

Query: 225 TSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDEN 284
           T+V Q    LP E W+QNERELKRE+RKQSNRESARRSRLRKQAEAEEL+ +V SL  EN
Sbjct: 174 TNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAEN 233

Query: 285 ASLKSEINQLSENSEKLRQENAALLEKLK 313
            +LKSEIN+L ENSEKL+ ENAAL+E+LK
Sbjct: 234 MTLKSEINKLMENSEKLKLENAALMERLK 262

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 172/333 (51%), Gaps = 63/333 (18%)

Query: 1   MGNNEDGKSFKSEKPSSP----PPSDQGNIHMYTDWA-AMQAYYGPRVAIPPYYNSPIAS 55
           MG +ED   FK+ KP+S     PP+       Y DW  +MQAYYG      P++ SP+ S
Sbjct: 1   MGTSEDKMPFKTTKPTSSAQEVPPTP------YPDWQNSMQAYYGGGGTPNPFFPSPVGS 54

Query: 56  GHAPQPYMWGPAQPMMPPYG--APYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTP 113
             +P PYMWG    MMPPYG   PY A+Y  G VYAHP++P+            P    P
Sbjct: 55  -PSPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPM------------PPNSGP 101

Query: 114 LNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSD 173
            N E P K   +  +      K  +G   ++  +  + A    E     S   GS+D +D
Sbjct: 102 TNKE-PAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASHSDE-----SVTAGSSDEND 155

Query: 174 GNTVRAGQSRKKRSREGTPIAGK-------------PVGPVLSPGMPTKLELRNAPGMNV 220
            N  +  Q   ++   G  +A               P+ PV +PG  T L +    GM++
Sbjct: 156 ENANQQEQGSIRKPSFGQMLADASSQSTTGEIQGSVPMKPV-APG--TNLNI----GMDL 208

Query: 221 KASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 280
            +S   VP           +++ERELKR++RKQSNRESARRSRLRKQAE E+L ++V+SL
Sbjct: 209 WSSQAGVP-----------VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESL 257

Query: 281 IDENASLKSEINQLSENSEKLRQENAALLEKLK 313
            +EN SL+ E+ +LS   +KL+ EN ++ ++L+
Sbjct: 258 SNENQSLRDELQRLSSECDKLKSENNSIQDELQ 290

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 57/316 (18%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           M + E+G   K  KP+S           + D  +    Y    A   +Y S + S  +P 
Sbjct: 1   MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYYGGAAPAAFYASTVGSP-SPH 59

Query: 61  PYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
           PYMW      + PYG P  Y A++  GG++ HP VP           T P  + P + E 
Sbjct: 60  PYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPIVP-----------TDPN-LAPTSGEV 107

Query: 119 PTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVR 178
             K S    R  AKK  G+ G       +++ + + GAE + + S +D            
Sbjct: 108 GRKISDEKGRTSAKKSIGVSG-------STSFAVDKGAENQKAASSSDNDC--------- 151

Query: 179 AGQSRKKRSREGTPIAGKPVGPVLSP--GMPTKLELRNAPGMNVKASPTSVPQPCAVLPP 236
                                P LS   G+   LE+R+ P ++V A+P ++     +LP 
Sbjct: 152 ---------------------PSLSSENGVDGSLEVRSNP-LDV-AAPGAIVVHDGMLP- 187

Query: 237 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
           +  + +ERELKR+RRKQSNRESARRSRLRKQA+++EL  ++D+L  EN  L+  + ++SE
Sbjct: 188 DQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISE 247

Query: 297 NSEKLRQENAALLEKL 312
              ++  EN ++ E+L
Sbjct: 248 ACAEVTSENHSIKEEL 263

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 173/360 (48%), Gaps = 53/360 (14%)

Query: 1   MGNNEDGKSFKSEKP---SSPPPSDQGNIH-MYTDWAAMQAYYGPRVAIPP--YYNSPIA 54
           MG+N+     K+ KP     PP +  G    +Y +W   Q Y     A+PP  ++  P+A
Sbjct: 1   MGSNDPSTPSKASKPPEQEQPPATTSGTTAPVYPEWPGFQGY----PAMPPHGFFPPPVA 56

Query: 55  SGHAPQPYMWGPAQPMMPPYGAPYAAIYST--GGVYAHPAVPLGSHAHNHGVPTS----- 107
           +G A  PYMWGP Q M+PPYG P         G VYAHP  P G H  ++ + T+     
Sbjct: 57  AGQA-HPYMWGP-QHMVPPYGTPPPPYMMYPPGTVYAHPTAP-GVHPFHYPMQTNGNLEP 113

Query: 108 -------PAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRP 160
                  P A        P K+SG +  G+    +          +A++++         
Sbjct: 114 AGAQGAAPGAAETNGKNEPGKTSGPSANGVTSNSESGSDSESEGSDANSQNDS------- 166

Query: 161 SQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGKPV--GPVLSPGMP-TKLELRNAPG 217
              E D + +GS  N V    S    ++   P+   PV  G V+    P T L +    G
Sbjct: 167 HSKENDVNENGSAQNGVSHSSSHGTFNK---PMPLVPVQSGAVIGVAGPATNLNI----G 219

Query: 218 MNVKASPTSVPQPC--AVLPP-----ETWIQNERELKRERRKQSNRESARRSRLRKQAEA 270
           M+   +  S P P     +P      E W  +ERELK+++RK SNRESARRSRLRKQAE 
Sbjct: 220 MDYWGATGSSPVPAMRGKVPSGSARGEQW--DERELKKQKRKLSNRESARRSRLRKQAEC 277

Query: 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 330
           EEL ++ ++L  EN+SL+ E++++ +  E+L  +N +L  KL  +  G   + V + ++R
Sbjct: 278 EELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGGGGGSDAVPDMNER 337

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
           +ERELKRERRKQSNRESARRSRLRKQ E EEL++KV  L   N +L+SE++QL ++ + +
Sbjct: 247 DERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTM 306

Query: 302 RQENAALLEKLKS 314
             EN  L+ K+ S
Sbjct: 307 ETENKKLMGKILS 319

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306
           +RE+R+ SNRESARRSRLRKQ   +EL ++V  L  +NA + +    ++    ++ QEN 
Sbjct: 26  RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENT 85

Query: 307 ALLEKLKSAQLGNKQEIVLNEDKRVT 332
            L  + ++A+LG++   V NE  R+ 
Sbjct: 86  VL--RARAAELGDRLRSV-NEVLRLV 108

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 229 QPCAVLPPETWIQ-NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 287
           +P  V+ P T  Q +ER +K++RR   NRESA+ SR+RK+   E+L + +  L  +N+SL
Sbjct: 374 EPVQVVDPPTHNQEDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSL 433

Query: 288 KSEI 291
           K E+
Sbjct: 434 KEEV 437

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
255541782	401	Common plant regulatory factor CPRF-1, p	0.979	0.942	0.690	1e-149
357512481	425	G-box binding factor [Medicago truncatul	1.0	0.908	0.642	1e-144
388501482	425	unknown [Medicago truncatula]	1.0	0.908	0.64	1e-143
51870705	424	bZip transcription factor [Psophocarpus	0.997	0.908	0.623	1e-138
364521140	421	bZIP protein [Medicago sativa]	0.989	0.907	0.630	1e-138
356560615	424	PREDICTED: common plant regulatory facto	0.997	0.908	0.614	1e-136
359489695	430	PREDICTED: common plant regulatory facto	1.0	0.897	0.651	1e-135
169959	423	G-box binding factor, partial [Glycine m	0.994	0.907	0.613	1e-134
307136354	419	bzip transcription factor [Cucumis melo	0.974	0.897	0.597	1e-133
357512483	388	G-box binding factor [Medicago truncatul	0.911	0.907	0.649	1e-132

>gi|255541782|ref|XP_002511955.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis] gi|223549135|gb|EEF50624.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/407 (69%), Positives = 316/407 (77%), Gaps = 29/407 (7%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGNNE+GKS K +K SSP P DQ NIH+Y DWAAMQAYYGPR+A+PPYYNS +ASGHAP 
Sbjct: 3   MGNNEEGKSAKRDKSSSPAPPDQANIHVYPDWAAMQAYYGPRMALPPYYNSAMASGHAPH 62

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPT 120
           PYMWGP QPMMPPYG PYAA+YS GGVYAHPAVP+GS    HGVP SPAAVTPLN E PT
Sbjct: 63  PYMWGPPQPMMPPYGTPYAAVYSHGGVYAHPAVPIGSQPPGHGVPASPAAVTPLNVETPT 122

Query: 121 KSSGNADRGLAKKLKGLDGLAMSIGN--ASAESAEGGAEQRPSQSEADGSTDGSDGNTVR 178
           KS+GNADRGL KKLKG DGLAMSIGN  +  ESAEGG  +    SE +GST+GSDGNT  
Sbjct: 123 KSTGNADRGLIKKLKGFDGLAMSIGNGHSKVESAEGGERRLSQSSETEGSTNGSDGNTT- 181

Query: 179 AGQSRKKRSREGTPIAG-----------------KPVGPVLSPGMPTKLELRNAPGMNVK 221
           AG   KKRSREGTP  G                 K VG V+SP M T LELRN+P   V 
Sbjct: 182 AG---KKRSREGTPTIGGEIRTETRVNSLPTGEAKSVGSVISPSMSTALELRNSP---VS 235

Query: 222 ASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLI 281
           A+ T+V QPC VLPPETWIQNERELKRERRKQSNRESARRSRLRKQAE EELS KV+SL 
Sbjct: 236 AAKTNV-QPCPVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAETEELSHKVESLT 294

Query: 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN--EDKRVTPVSTENL 339
            EN +LKSEI+Q+SE SEKLR ENAALLEKLK+A+LG+ Q+I+LN  ++ R + VSTENL
Sbjct: 295 SENLALKSEIHQMSEKSEKLRLENAALLEKLKNAELGHSQDIMLNNSDEPRGSAVSTENL 354

Query: 340 LSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG 386
           LSRV+NS +V+R   E G ++E+ SNSGAKLHQLL  SPR DAVAAG
Sbjct: 355 LSRVDNSASVERKTAEDGDIYERTSNSGAKLHQLLSTSPRADAVAAG 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512481|ref|XP_003626529.1| G-box binding factor [Medicago truncatula] gi|355501544|gb|AES82747.1| G-box binding factor [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/425 (64%), Positives = 314/425 (73%), Gaps = 39/425 (9%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTP--------------------------------IAGKPVGPVLSP 204
             A Q+R+KRSREGTP                                + G+ VGPV S 
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAASDKMMAVAPAGVTGQLVGPVASS 240

Query: 205 GMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRL 264
            M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARRSRL
Sbjct: 241 AMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARRSRL 300

Query: 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 324
           RKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENSE+LR ENAAL EK K A+LG  +EI+
Sbjct: 301 RKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENAALKEKFKIAKLGQPKEII 360

Query: 325 LN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 381
           L   + +R TPVSTENLLSRV NNSG+ DR +E+     +   NSGAKLHQLLDASPR D
Sbjct: 361 LTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVEDENGYCDNKPNSGAKLHQLLDASPRAD 420

Query: 382 AVAAG 386
           AVAAG
Sbjct: 421 AVAAG 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501482|gb|AFK38807.1| unknown [Medicago truncatula]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/425 (64%), Positives = 313/425 (73%), Gaps = 39/425 (9%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLA SIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLATSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTP--------------------------------IAGKPVGPVLSP 204
             A Q+R+KRSREGTP                                + G+ VGPV S 
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAASDKMMAVAPAGVTGQLVGPVASS 240

Query: 205 GMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRL 264
            M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARRSRL
Sbjct: 241 AMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARRSRL 300

Query: 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 324
           RKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENSE+LR ENAAL EK K A+LG  +EI+
Sbjct: 301 RKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENAALKEKFKIAKLGQPKEII 360

Query: 325 LN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 381
           L   + +R TPVSTENLLSRV NNSG+ DR +E+     +   NSGAKLHQLLDASPR D
Sbjct: 361 LTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVEDENGYCDNKPNSGAKLHQLLDASPRAD 420

Query: 382 AVAAG 386
           AVAAG
Sbjct: 421 AVAAG 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51870705|dbj|BAD42432.1| bZip transcription factor [Psophocarpus tetragonolobus]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/425 (62%), Positives = 305/425 (71%), Gaps = 40/425 (9%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+E+GKS K+  PSSP  +DQ N   IH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   MGNSEEGKSIKTGSPSSPATTDQTNQPSIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWG  Q MMPPYG PYAA YS GGVY HPAV +G H H  GVP+ PAA TP + E
Sbjct: 60  APHPYMWGSPQAMMPPYGPPYAAFYSHGGVYTHPAVAIGPHPHGQGVPSPPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN D+GL KKLKG DGLAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAERGAENRLSQSADTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTP--------------------------------IAGKPVGPVLSP 204
             A + R+KRSREGTP                                +AG  VGP++S 
Sbjct: 180 AGANKMRRKRSREGTPTTDGEGKTETQEGSVSKETASSRKIMPATPASVAGNLVGPIVSS 239

Query: 205 GMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRL 264
           GM T LELRN   ++ KA+ TS PQPCAV+P E W+QNERELKRERRKQSNRESARRSRL
Sbjct: 240 GMTTALELRNPSTVHSKANNTSAPQPCAVVPSEAWLQNERELKRERRKQSNRESARRSRL 299

Query: 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 324
           RKQAE EEL+RKV+ L  EN SLKSEI QL+E+SE++R EN+AL EKL++ QLG  +EI+
Sbjct: 300 RKQAETEELARKVEMLSTENVSLKSEITQLTESSEQMRMENSALREKLRNTQLGQTEEIL 359

Query: 325 LN--EDKR-VTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 381
           L   + KR  TPVSTENLLSRVNNS + DR  E      E   NSGAKLHQLLDA+PR D
Sbjct: 360 LTSIDSKRGATPVSTENLLSRVNNSSSNDRTAENENDFCENKPNSGAKLHQLLDANPRAD 419

Query: 382 AVAAG 386
           AVAAG
Sbjct: 420 AVAAG 424

Source: Psophocarpus tetragonolobus

Species: Psophocarpus tetragonolobus

Genus: Psophocarpus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|364521140|gb|AEW66884.1| bZIP protein [Medicago sativa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/425 (63%), Positives = 309/425 (72%), Gaps = 43/425 (10%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP Q MMPPYG PYAA+Y  GGVY HPAVP+G H H+  + +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQHMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQEISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTP--------------------------------IAGKPVGPVLSP 204
             A Q+R+KRSRE TP                                + G+ VGP +S 
Sbjct: 181 SGANQTRRKRSRERTPTTDGEGKTHTQGSQVSKEISVSDKMMAVAPAGVTGQLVGPAVSS 240

Query: 205 GMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRL 264
            M T LELRN+  ++ K +PTS PQP A LPPE WIQNERELKRERRKQSNRESARRSRL
Sbjct: 241 AMTTALELRNSSSVHSKINPTSAPQPSAALPPEAWIQNERELKRERRKQSNRESARRSRL 300

Query: 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 324
           RKQAEAEEL+RKV+SL  E+ASL+SEIN+L+E SE+LR EN AL EK+K AQLG  +EI+
Sbjct: 301 RKQAEAEELARKVESLNAESASLRSEINRLAEKSERLRMENVALKEKIKIAQLGQPKEII 360

Query: 325 LN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 381
           L   + +R  PVSTENLLSRV NNSGTV+   +E G+   K  NSGAKLHQLLDASPR D
Sbjct: 361 LTNIDSQRTAPVSTENLLSRVNNNSGTVE---DENGYCDNK-PNSGAKLHQLLDASPRAD 416

Query: 382 AVAAG 386
           AVAAG
Sbjct: 417 AVAAG 421

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560615|ref|XP_003548586.1| PREDICTED: common plant regulatory factor 1 [Glycine max]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/425 (61%), Positives = 304/425 (71%), Gaps = 40/425 (9%)

Query: 1   MGNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASG 56
           MGN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASG
Sbjct: 1   MGNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASG 59

Query: 57  HAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNT 116
           HAP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + 
Sbjct: 60  HAPHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSV 119

Query: 117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGN 175
           E+PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGN
Sbjct: 120 ESPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGN 179

Query: 176 TVRAGQSRKKRSREGTPI--------------------------------AGKPVGPVLS 203
           T  A Q+++KRSREGTPI                                AG  VGPV+S
Sbjct: 180 TAGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSATPASVAGTLVGPVVS 239

Query: 204 PGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSR 263
            GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESARRSR
Sbjct: 240 SGMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESARRSR 299

Query: 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI 323
           LRKQAE EEL+RKV+ L  EN SLKSEI +L+E SE++R EN+AL EKL + QLG ++EI
Sbjct: 300 LRKQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMENSALREKLINTQLGPREEI 359

Query: 324 VLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 381
            L+  + KR  PVSTENLLSRVNNSG  DR  E    + E   NSGAKLHQLLD +PR +
Sbjct: 360 TLSSIDSKRAAPVSTENLLSRVNNSGANDRTAENENDICENKPNSGAKLHQLLDTNPRAN 419

Query: 382 AVAAG 386
           AVAAG
Sbjct: 420 AVAAG 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489695|ref|XP_002279966.2| PREDICTED: common plant regulatory factor 1-like [Vitis vinifera] gi|297745388|emb|CBI40468.3| unnamed protein product [Vitis vinifera]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 280/430 (65%), Positives = 319/430 (74%), Gaps = 44/430 (10%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGN E+GKS K EKP+SPPP DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP 
Sbjct: 1   MGNEEEGKSPKPEKPTSPPPPDQANIHVYPDWAAMQAYYGPRVTLPPYYNSAMASGHAPH 60

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA-----AVTPLN 115
           PY+WGP QPMMPPYG PYAAIYS GGVY HPAVPLGSH+H HGV +SP      A  PL+
Sbjct: 61  PYIWGPPQPMMPPYGPPYAAIYSPGGVYPHPAVPLGSHSHGHGVQSSPVVSEALAAPPLS 120

Query: 116 TEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDG 174
            E P KSSGN DRGL KKLKG DGLAMSIGN + ES EGG++   SQS E +GS+DGSDG
Sbjct: 121 IETPAKSSGNTDRGLMKKLKGFDGLAMSIGNGNGESTEGGSDHGLSQSGETEGSSDGSDG 180

Query: 175 NTVRAGQSRKKRSREGTP------------------------------------IAGKPV 198
           NT  A Q+R+KRSREGTP                                    + GK  
Sbjct: 181 NTAGADQTRRKRSREGTPPIGGDGKTETQATSAPSAEVNAGSDKVLGVAVPPTSVTGKLA 240

Query: 199 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 258
           G VLSP M T LELRN P +N K SP+S+PQP A++P +TWI NERE+KRERRKQSNRES
Sbjct: 241 GAVLSPRMSTALELRNPPSVNAKTSPSSIPQPGAMVPSDTWILNEREIKRERRKQSNRES 300

Query: 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318
           ARRSRLRKQAE EEL+ KV+SL  EN+ LKSEIN+L ENSEKL+ ENA L+EKLKSAQL 
Sbjct: 301 ARRSRLRKQAETEELALKVESLNTENSVLKSEINRLRENSEKLKLENATLMEKLKSAQLE 360

Query: 319 NKQEIVLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDA 376
             ++  LN  +DKRV PVSTENLLSRVNNSG+VDR+ EE G ++EKN+N+GAKLHQLLD 
Sbjct: 361 QAEDTHLNKVDDKRVLPVSTENLLSRVNNSGSVDRSTEEEGDMYEKNTNTGAKLHQLLDT 420

Query: 377 SPRTDAVAAG 386
           SPR DAVAAG
Sbjct: 421 SPRADAVAAG 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169959|gb|AAB00097.1| G-box binding factor, partial [Glycine max]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/424 (61%), Positives = 303/424 (71%), Gaps = 40/424 (9%)

Query: 2   GNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           GN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   GNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + E
Sbjct: 60  APHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTPI--------------------------------AGKPVGPVLSP 204
             A Q+++KRSREGTPI                                AG  VGPV+S 
Sbjct: 180 AGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSATPASVAGTLVGPVVSS 239

Query: 205 GMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRL 264
           GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESARRSRL
Sbjct: 240 GMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESARRSRL 299

Query: 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 324
           RKQAE EEL+RKV+ L  EN SLKSEI +L+E SE++R EN+AL EKL + QLG ++EI 
Sbjct: 300 RKQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMENSALREKLINTQLGPREEIT 359

Query: 325 LN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDA 382
           L+  + KR  PVSTENLLSRVNNSG  DR  E    + E   NSGAKLHQLLD +PR +A
Sbjct: 360 LSSIDSKRAAPVSTENLLSRVNNSGANDRPAENENDICETKPNSGAKLHQLLDTNPRANA 419

Query: 383 VAAG 386
           VAAG
Sbjct: 420 VAAG 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136354|gb|ADN34168.1| bzip transcription factor [Cucumis melo subsp. melo]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/427 (59%), Positives = 302/427 (70%), Gaps = 51/427 (11%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQ------GNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA 54
           MG +E+ KS K+EKPSSP P DQ       +IH++ DWAAMQAYYGPRVA+PPYYNS +A
Sbjct: 1   MGTSEEAKSVKTEKPSSPTPPDQNGVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVA 60

Query: 55  SGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPL 114
           SGHAP PYMWGP Q M+PPYG PYAAIYS GGVYAHPAV +G H+H  GVP+SPAA TPL
Sbjct: 61  SGHAPHPYMWGPPQ-MIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHAPGVPSSPAAATPL 119

Query: 115 NTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSD 173
           + E P+K SGN+ +GL KKLKG DGLAMSIGN S ESAEGGAE   S+S E +GS+DGSD
Sbjct: 120 SIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTESAEGGAEHGQSESMETEGSSDGSD 179

Query: 174 GNTVRAGQSRKKRSREGTPIAG----------KPV------------------------- 198
           G T  A  +++KRSREGTP  G           PV                         
Sbjct: 180 GTTAGASHNKRKRSREGTPTTGGKDAKIEPQASPVTAAEMNESSSKLLGTTKAVNATGKL 239

Query: 199 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 258
           G V+SPGM T LELRN   MN   SPT+VP PC+VLP E W+QNE+ELKRERRKQSNRES
Sbjct: 240 GSVISPGMSTALELRNPSSMNAMTSPTTVP-PCSVLPSEVWLQNEKELKRERRKQSNRES 298

Query: 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318
           ARRSRLRKQAE EEL+RKVDSL  EN +++SEI++LSENSEKL++EN+ L+EKLKSAQ G
Sbjct: 299 ARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSG 358

Query: 319 NKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 378
             + + +NE K   PVS E         G V++++ E   + +KNS+SGAKL QLLD SP
Sbjct: 359 RSEALDMNEKKMQQPVSAE-------MKGPVNKSISEESIICKKNSSSGAKLRQLLDTSP 411

Query: 379 RTDAVAA 385
           R DAVAA
Sbjct: 412 RADAVAA 418

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512483|ref|XP_003626530.1| G-box binding factor [Medicago truncatula] gi|355501545|gb|AES82748.1| G-box binding factor [Medicago truncatula]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/388 (64%), Positives = 287/388 (73%), Gaps = 36/388 (9%)

Query: 35  MQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVP 94
           MQAYYGPRVA+PPYYNSP+ASGH P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP
Sbjct: 1   MQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVP 60

Query: 95  LGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEG 154
           +G H H+ G+ +SPA  TPL+ E P KSSGN D+GL KKLKG DGLAMSIGN  AESAE 
Sbjct: 61  IGPHPHSQGISSSPATGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEP 120

Query: 155 GAEQRPSQS-EADGSTDGSDGNTVRAGQSRKKRSREGTP--------------------- 192
           GAE R SQS   +GS+DGSDGNT  A Q+R+KRSREGTP                     
Sbjct: 121 GAESRQSQSVNTEGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAA 180

Query: 193 -----------IAGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQ 241
                      + G+ VGPV S  M T LELRN+  ++ K +PTS PQP AVLPPE WIQ
Sbjct: 181 SDKMMAVAPAGVTGQLVGPVASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQ 240

Query: 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
           NERELKRERRKQSNRESARRSRLRKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENSE+L
Sbjct: 241 NERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERL 300

Query: 302 RQENAALLEKLKSAQLGNKQEIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGH 358
           R ENAAL EK K A+LG  +EI+L   + +R TPVSTENLLSRV NNSG+ DR +E+   
Sbjct: 301 RMENAALKEKFKIAKLGQPKEIILTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVEDENG 360

Query: 359 LFEKNSNSGAKLHQLLDASPRTDAVAAG 386
             +   NSGAKLHQLLDASPR DAVAAG
Sbjct: 361 YCDNKPNSGAKLHQLLDASPRADAVAAG 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2063020	382	GBF3 "G-box binding factor 3"	0.849	0.858	0.462	3.8e-69
TAIR|locus:2124938	360	GBF2 "G-box binding factor 2"	0.891	0.955	0.396	7.3e-59
TAIR|locus:2031705	389	bZIP68 "basic region/leucine z	0.398	0.395	0.409	1.6e-21
TAIR|locus:2062455	409	bZIP16 "basic region/leucine z	0.367	0.347	0.396	3.1e-20
TAIR|locus:2115250	315	GBF1 "G-box binding factor 1"	0.556	0.682	0.330	4.4e-20
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.259	0.537	0.396	1.2e-10
TAIR|locus:2012413	138	bZIP "AT1G68880" [Arabidopsis	0.209	0.586	0.494	5.7e-10
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.178	0.398	0.513	9.5e-10
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.183	0.430	0.445	9.5e-10
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.202	0.456	0.337	1.2e-09

TAIR|locus:2063020 GBF3 "G-box binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 166/359 (46%), Positives = 209/359 (58%)

Query:    22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWXXXXXXXXXXXXXXXX 80
             DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW                
Sbjct:    23 DQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAV 82

Query:    81 IYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNXXXXXXXXXXXXXXX 140
                 GGVYAHP +P+GS       P      T L+ + PTKS+GN               
Sbjct:    83 YPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDNGLMKKLKEFDGL 142

Query:   141 XMXXXXXXXXXXXXXXXQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIA-GKPVG 199
              M               +  + SE DGSTDGSDGNT  A + + KRSREGTP   GK + 
Sbjct:   143 AMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSREGTPTKDGKQLV 202

Query:   200 PV-----LSPGM-PTKLELRN------APGMNVKASPTSVPQPCAVLPPETWIQNERELK 247
                    +SP    T ++L        +PG++  ++P  + Q  A++PPETW+QNERELK
Sbjct:   203 QASSFHSVSPSSGDTGVKLIQGSGAILSPGVSANSNPF-MSQSLAMVPPETWLQNERELK 261

Query:   248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307
             RERRKQSNRESARRSRLRKQAE EEL+RKV++L  EN +L+SE+NQL+E S+KLR  NA 
Sbjct:   262 RERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANAT 321

Query:   308 LLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNS 366
             LL+KLK ++           +KRV P    N+LSRV NSG  D+N  +G +  + NS S
Sbjct:   322 LLDKLKCSE----------PEKRV-PA---NMLSRVKNSGAGDKNKNQGDN--DSNSTS 364

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2124938 GBF2 "G-box binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 142/358 (39%), Positives = 192/358 (53%)

Query:     1 MGNNEDGXXXXXXXXXXXXXX-DQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
             MG+NE+G               +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct:     1 MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query:    59 PQPYMWXXXXXXXXXXXXXXXXIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
             P PYMW                    GGVYAHP V +GS        ++    TPL  +A
Sbjct:    61 PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query:   119 PTKSSGNXXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXQ-RPSQS-EADGSTDGSDGNT 176
             P  S+GN                M               + R SQS E DGS++GSDGNT
Sbjct:   121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query:   177 VRAGQSRKKRSREGTPIAGKPVGPVLSPGMPTKLELRNAPG--MNVKASPTSVP-QPCAV 233
                 QSR+KR ++ +P  G+   P     +P + E    P   M     PT++  Q  A 
Sbjct:   181 TGGEQSRRKRRQQRSPSTGER--PSSQNSLPLRGE-NEKPDVTMGTPVMPTAMSFQNSAG 237

Query:   234 LP--PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 291
             +   P+ W  NE+E+KRE+RKQSNRESARRSRLRKQAE E+LS KVD+L+ EN SL+S++
Sbjct:   238 MNGVPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKL 295

Query:   292 NQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTV 349
              QL+  SEKLR EN A+L++LK+   G  + ++   DK  +   ++ +  ++ N+  +
Sbjct:   296 GQLNNESEKLRLENEAILDQLKAQATGKTENLISRVDKNNSVSGSKTVQHQLLNASPI 353

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 68/166 (40%), Positives = 95/166 (57%)

Query:   161 SQSEADGSTDGSDGNTV-RAGQSRKKRSREGT--PI----AGKPVGPVLSPGMPTKLELR 213
             SQ+++    +G DG T   +G S     R G+  P+    A  PV     PG PT L + 
Sbjct:   201 SQNDSGSRHNGKDGETASESGGSAHGPPRNGSNLPVNQTVAIMPVSATGVPGPPTNLNIG 260

Query:   214 ----NAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAE 269
                 +  G NV  +   V    +   P   + +ERE+KR+RRKQSNRESARRSRLRKQAE
Sbjct:   261 MDYWSGHG-NVSGAVPGVVVDGSQSQPWLQVSDEREIKRQRRKQSNRESARRSRLRKQAE 319

Query:   270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315
              +EL+++ + L  EN+SL++EIN+L    E+L  EN++L  K  SA
Sbjct:   320 CDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKNKFSSA 365

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 63/159 (39%), Positives = 90/159 (56%)

Query:   165 ADGSTDGSDGNTVR-AGQSRKKRSREGTPIAGKPVGPVLSP---GMPTKLELRNAPGMNV 220
             A+G  +GS G  +    Q+          + G P    +     G PT   +   PGM+ 
Sbjct:   220 ANGPQNGSAGTPILPVSQTVPIMPMTAAGVPGPPTNLNIGMDYWGAPTSAGI---PGMHG 276

Query:   221 KASPTSVPQPCAVLP-------PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEEL 273
             K S    P P  V P        + W+Q++RELKR+RRKQSNRESARRSRLRKQAE +EL
Sbjct:   277 KVS---TPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRKQSNRESARRSRLRKQAECDEL 333

Query:   274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312
             +++ + L +EN +L++EIN+L    E+L  EN +L ++L
Sbjct:   334 AQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQL 372

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 81/245 (33%), Positives = 122/245 (49%)

Query:    90 HPAV-PLGS-HAHNHGVPTSPAAVTPLNTE-APTKSSGNXXXXXXXXXXXXXXXXMXXXX 146
             +PA+ P G+ +AH   +P  P +  P N E A  ++SG                 +    
Sbjct:    78 YPAMYPPGAVYAHP-SMPMPPNS-GPTNKEPAKDQASGKKSKGNSKKKAEGGDKALSGSG 135

Query:   147 XXXXXXXXXXXQRPSQSEADGSTDGSDGNTVRA---GQSRKKRSREGTPIAGKPVGPV-L 202
                           S  E D + +  +  ++R    GQ     S + T   G+  G V +
Sbjct:   136 NDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQMLADASSQST--TGEIQGSVPM 193

Query:   203 SPGMP-TKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 261
              P  P T L +    GM++ +S   VP           +++ERELKR++RKQSNRESARR
Sbjct:   194 KPVAPGTNLNI----GMDLWSSQAGVP-----------VKDERELKRQKRKQSNRESARR 238

Query:   262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 321
             SRLRKQAE E+L ++V+SL +EN SL+ E+ +LS   +KL+ EN ++ ++L+   LG   
Sbjct:   239 SRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRV-LG--A 295

Query:   322 EIVLN 326
             E V N
Sbjct:   296 EAVAN 300

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IEP

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 42/106 (39%), Positives = 65/106 (61%)

Query:   237 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
             E ++ NER   ++RR  SNRESARRSR+RKQ   +EL  +V  L  EN  L  ++NQ+S+
Sbjct:    67 EIFVINER---KQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSD 123

Query:   297 NSEKLRQENAALLEK-LKSAQLGNKQEIVLN--EDKRVTPVSTENL 339
             N++ + QEN++L E+ L+  Q+    + +     DK  +P S + L
Sbjct:   124 NNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDEL 169

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2012413 bZIP "AT1G68880" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 42/85 (49%), Positives = 54/85 (63%)

Query:   243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
             + E KR RRK SNRESARRSR+RKQ   EEL   +  LI++N SL  E++Q  E  EK+ 
Sbjct:    44 DNERKR-RRKVSNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKVI 102

Query:   303 QENAALLEK-LKSAQLGNKQEIVLN 326
             +EN  L E+  KS ++    EI LN
Sbjct:   103 EENMKLREENSKSRKMIG--EIGLN 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query:   240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 299
             I NER   ++RR  SNRESARRSR+RKQ   +EL  +V  L  EN  L  ++N LSE+ +
Sbjct:    77 IINER---KQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHD 133

Query:   300 KLRQENAALLEK 311
             K+ QENA L E+
Sbjct:   134 KVLQENAQLKEE 145

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 33/74 (44%), Positives = 51/74 (68%)

Query:   241 QNEREL---KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 297
             +N +E+   ++++RK SNRESARRSR+RKQ + +EL  +V  L DEN  L  ++N + E+
Sbjct:    63 ENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVLES 122

Query:   298 SEKLRQENAALLEK 311
              EK+ +EN  L E+
Sbjct:   123 QEKVIEENVQLKEE 136

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 27/80 (33%), Positives = 51/80 (63%)

Query:   247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306
             ++ +R  SNRESARRSR+RKQ   ++L+ +++ L ++N  + + +   S+   K++ EN+
Sbjct:    31 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQAENS 90

Query:   307 ALLEKLK--SAQLGNKQEIV 324
              L  +++  S +L +  EIV
Sbjct:    91 VLTAQMEELSTRLQSLNEIV 110

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42776	GBF3_ARATH	No assigned EC number	0.5443	0.9093	0.9188	yes	no
Q99089	CPRF1_PETCR	No assigned EC number	0.5093	0.9611	0.9026	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	2e-60
smart00338	65	smart00338, BRLZ, basic region leucin zipper	5e-23
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-22
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	1e-10
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-08
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	2e-05
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	1e-04
pfam03962	188	pfam03962, Mnd1, Mnd1 family	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
pfam06005	72	pfam06005, DUF904, Protein of unknown function (DU	6e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	0.002
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.003
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	0.003

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score =  193 bits (491), Expect = 2e-60
 Identities = 95/187 (50%), Positives = 114/187 (60%), Gaps = 13/187 (6%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MG++E+GK  KS  P +    D     +Y DW+AMQAYYGPR   PPY+NS +AS   P 
Sbjct: 1   MGSSEEGKPSKS-SPKTSVQEDTPTPTVYPDWSAMQAYYGPRPP-PPYFNSSVASSPQPH 58

Query: 61  PYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAA--VTPLNT 116
           PYMWGP QPMMPPYG P  YAA+Y  GGVYAHP++P GSH  +     S      TPL+ 
Sbjct: 59  PYMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSM 118

Query: 117 EAPTKSSGNADRGLAKKLKGLD---GLAMSIGNASAESAEGG-AEQRPSQSE---ADGST 169
           E   KSS N D+G  KK KG D   GLAMS  N  +  A G  A    SQS    +DGS+
Sbjct: 119 ETDAKSSDNKDKGSIKKSKGSDGSLGLAMSGKNGESGKASGSSANGGSSQSSESGSDGSS 178

Query: 170 DGSDGNT 176
           +GSDGN+
Sbjct: 179 EGSDGNS 185

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 91.1 bits (227), Expect = 5e-23
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
           E + KR RR++ NRE+ARRSR RK+AE EEL RKV+ L  EN  LK EI +L    EKL+
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Query: 303 QENAA 307
            E   
Sbjct: 61  SELEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 89.3 bits (222), Expect = 2e-22
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
           E+ELKRERR+Q NRE+ARRSRLRK+A  EEL  KV  L  EN +L+SE+ +L +   KL+
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 303 QEN 305
            EN
Sbjct: 61  SEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
             R R++  NRE+ARRSR RK    ++L  KV+ L  EN+ L+ E+++L +
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKK 51

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294
           +  R+RR++ N E+ARRSR +K+   EEL  +V  L +ENA L+ ++ QL
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQL 51

Length = 54

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 35/127 (27%)

Query: 240 IQNEREL----------KRERRKQSNRESARRSRLR-KQAEAEELSRKVDSLIDENA--- 285
           ++  RE+          + E  ++      R   L  K+ E +E   K D  + EN    
Sbjct: 3   LEKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR 62

Query: 286 ---------------SLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 330
                            + EI +L    E+L+ E   L EKL+  Q     E  L     
Sbjct: 63  RRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQ---PYEEFLE---S 116

Query: 331 VTPVSTE 337
           V   S E
Sbjct: 117 VVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 24/66 (36%)

Query: 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 320
           + R R     E L   +  L  E   L++ I +L    E L +E A L  K +  +   K
Sbjct: 43  QQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLK 102

Query: 321 QEIVLN 326
                 
Sbjct: 103 TLEQKL 108

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 242 NERELKRER-RKQSNRESARRSRLRKQAEAEELSRKV----DSLIDENASLKSEINQLSE 296
           N+ + + E+ +K+      R + L+ Q E  +  R+       L++E   L+ E+ +L  
Sbjct: 65  NKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKA 124

Query: 297 NSEKLRQENAALLEKLK 313
             EK  + +   +EKLK
Sbjct: 125 ELEKYEKNDPERIEKLK 141

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 237 ETWIQNERELKRERRKQSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLS 295
           E W+ + R L       S+  SAR  RL + Q E  EL  ++  L ++ A L+ E  +L 
Sbjct: 50  EGWVLS-RYL-------SDTPSAR-ERLPELQQELAELQEELAELQEQLAELQQENQELK 100

Query: 296 ENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 330
           +    L  E   L ++L   +  +   I L+E+ R
Sbjct: 101 QELSTLEAELERLQKELARIKQLSANAIELDEENR 135

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 232 AVLPPETWIQNERELKR-----ERRKQSNRESARRSRLRKQA-----EAEELSRKVDSLI 281
           +VL PE   +  +++K      E  K++  E+ +   L+ +      +A E+  K+  L 
Sbjct: 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185

Query: 282 DENASLKSEINQLSENSEKLRQE 304
           +E      E+ +L E +++LR+E
Sbjct: 186 NEAQEYHEEMIKLFEEADELRKE 208

Length = 294

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENAS-------LKSEINQLSEN 297
           EL+    +    ES        + + E L  KV  L  + AS       L++ + +L + 
Sbjct: 359 ELEELEAELEELESRLEE---LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

Query: 298 SEKLRQENAALLEKLKSAQL 317
            E+L+QE   LL+KL+ A+L
Sbjct: 416 RERLQQEIEELLKKLEEAEL 435

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904)

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316
           EEL  K+   ++  A L+ EI +L E +E+L +EN  L E+ K  +
Sbjct: 7   EELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLK 52

This family consists of several bacterial and archaeal hypothetical proteins of unknown function. Length = 72

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---EN 297
           + E EL+  R      E         +   E+L  K++ L  E   L  E N+L+   E 
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361

Query: 298 SEKLRQENAALLEKLKSAQLGNKQEI 323
             K  +E    LEK     L   +++
Sbjct: 362 RLKELEERLEELEKELEKALERLKQL 387

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 241 QNERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 299
           +   +L+    +     E         Q   EEL  +++SL +  A LK EI +L E  +
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 300 KLRQENAALLEKLKSAQL 317
            L++E   L E+L+ A+ 
Sbjct: 790 ALQEELEELEEELEEAER 807

Length = 1163

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305
           L++  R    RES   +  + +AE E L   ++ L  +   L+ E+  L     +L ++ 
Sbjct: 42  LQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKL 101

Query: 306 AALLEKLKS 314
             L +KLK+
Sbjct: 102 KTLEQKLKN 110

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 244 RELKRERRKQSNRESARRSRLRKQ-----AEAEELSRKVDSLIDENASLKSEINQLSENS 298
           +E + E RK+++  + +R  L  +      +A+EL  + D + +E   LK + ++++   
Sbjct: 26  KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85

Query: 299 EKLRQENAALLEKLKSAQLG 318
           ++LR+E   L EK     LG
Sbjct: 86  QELRKEYRELKEKRNEFNLG 105

Length = 294

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 247 KRERRKQSNRESAR-RSRLRKQAEAEELSRKVDSLIDENASLKSEINQL--SENSEKLRQ 303
           K ERR +   E+A  R + +K+   ++L  + ++L +    L+    Q    +   K   
Sbjct: 152 KPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211

Query: 304 ENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVN 344
           E   L EKL+  +        L  ++    +  E L     
Sbjct: 212 EYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQE 252

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 244 RELKRERRKQSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
            E ++ R K +   +  +  L   +AE EE+ ++     DE    + ++ +L     +L+
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 303 QENAALLEKLK--SAQLGN-KQEIVLNEDK 329
           +E   L E+L+  S +L +    I   E K
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAK 435

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 37/255 (14%)

Query: 96  GSHAHNHG----VPTSPAAVTP--------LNTEAPTKSSGNADRGLAKKLKGLDGLAMS 143
               H+ G          +            N   P+ SS N  +            A S
Sbjct: 267 NHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAA--AGS 324

Query: 144 IGNASAESAE-GGAEQRPSQSEADGSTDGS-DGNTVRAGQSRKKRSREGTPIAGKPVGPV 201
           IG+ S++SA+     +  S  ++  S +GS   ++V   +S++KR+      +G      
Sbjct: 325 IGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRA--SKSSSGARDSKK 382

Query: 202 LSPGMPTKLELRNAPGMNVKASPTSV---PQPCAVLPPE--TWIQNERELKRERRKQSNR 256
            + GM     + N    N  ++P+++    Q    L  E     QNE EL+ +    ++ 
Sbjct: 383 DASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSL 442

Query: 257 ESARRSRL-RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315
           E + +S L + + E + L  K++S++      K  +  + E   K   ++    EK    
Sbjct: 443 ERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSM-EKRLKSEADSRVNAEKQ--- 498

Query: 316 QLGNKQEIVLNEDKR 330
                    L E+K+
Sbjct: 499 ---------LAEEKK 504

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL- 301
           E+E K ER++    ES    RL ++A +  L RK ++L  +  +L+S+   L++ S+ + 
Sbjct: 89  EQEFKSERQELKQIES----RLTERATS--LDRKDENLSSKEKTLESKEQSLTDKSKHID 142

Query: 302 -RQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSR 342
            R+E    LE+ K A+L     +   E + +    TEN L+ 
Sbjct: 143 EREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTH 184

Length = 535

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	100.0
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.48
smart00338	65	BRLZ basic region leucin zipper.	99.42
KOG3584	348	consensus cAMP response element binding protein an	99.28
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.22
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.15
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.14
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.11
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.58
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.38
KOG3119	269	consensus Basic region leucine zipper transcriptio	98.0
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.89
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.68
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.19
PRK10884	206	SH3 domain-containing protein; Provisional	96.74
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.57
PRK13169	110	DNA replication intiation control protein YabA; Re	96.26
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	96.21
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.19
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.42
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	95.39
PRK10884	206	SH3 domain-containing protein; Provisional	95.34
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.23
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.1
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.08
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	94.86
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.8
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.66
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.62
COG4467	114	Regulator of replication initiation timing [Replic	94.47
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	94.35
PRK00295	68	hypothetical protein; Provisional	94.13
PRK02793	72	phi X174 lysis protein; Provisional	94.12
PRK02119	73	hypothetical protein; Provisional	94.06
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	94.04
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	94.03
PRK04325	74	hypothetical protein; Provisional	94.02
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.97
PRK00736	68	hypothetical protein; Provisional	93.96
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	93.92
PRK04406	75	hypothetical protein; Provisional	93.75
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.75
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.58
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	93.25
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	93.22
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.04
PRK00846	77	hypothetical protein; Provisional	92.95
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.86
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.62
PRK11637	428	AmiB activator; Provisional	92.3
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.28
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.24
PRK13922	276	rod shape-determining protein MreC; Provisional	92.2
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.15
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.14
KOG3650	120	consensus Predicted coiled-coil protein [General f	92.1
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	92.09
PRK11637	428	AmiB activator; Provisional	91.95
KOG1962	216	consensus B-cell receptor-associated protein and r	91.9
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	91.82
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	91.51
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	91.5
smart00338	65	BRLZ basic region leucin zipper.	91.5
PRK13169	110	DNA replication intiation control protein YabA; Re	91.33
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	90.75
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.74
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	90.69
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.66
KOG3335	181	consensus Predicted coiled-coil protein [General f	90.59
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.52
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	90.49
PRK00888	105	ftsB cell division protein FtsB; Reviewed	90.44
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.32
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.15
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.52
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	89.37
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	89.23
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.0
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.83
KOG2236	483	consensus Uncharacterized conserved protein [Funct	88.82
PRK02119	73	hypothetical protein; Provisional	88.8
PRK10803	263	tol-pal system protein YbgF; Provisional	88.77
PHA02562	562	46 endonuclease subunit; Provisional	88.74
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	88.7
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.67
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	88.57
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.57
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	88.54
KOG1962	216	consensus B-cell receptor-associated protein and r	88.52
PRK04406	75	hypothetical protein; Provisional	88.44
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.43
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	88.37
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	88.28
COG2433	652	Uncharacterized conserved protein [Function unknow	88.21
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	88.12
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.07
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.04
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.93
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	87.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.75
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	87.64
PF15294	278	Leu_zip: Leucine zipper	87.57
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.55
KOG3119	269	consensus Basic region leucine zipper transcriptio	87.41
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.19
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.14
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	87.12
PRK00888	105	ftsB cell division protein FtsB; Reviewed	87.07
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	87.0
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	86.91
COG4467	114	Regulator of replication initiation timing [Replic	86.86
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	86.82
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	86.79
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	86.73
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	86.56
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	86.53
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	86.48
KOG4571	294	consensus Activating transcription factor 4 [Trans	86.26
PF10186	302	Atg14: UV radiation resistance protein and autopha	85.93
PRK02793	72	phi X174 lysis protein; Provisional	85.91
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.68
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.6
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.52
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	85.32
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	85.27
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	85.24
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	85.05
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.97
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	84.93
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	84.92
KOG4797	123	consensus Transcriptional regulator [Transcription	84.82
PRK00295	68	hypothetical protein; Provisional	84.82
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.57
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	84.54
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	84.27
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	84.16
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	84.05
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	83.93
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.78
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.76
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.58
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	83.53
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	83.52
KOG1103	561	consensus Predicted coiled-coil protein [Function	83.51
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	83.49
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	83.45
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	83.29
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	83.15
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	83.02
PRK09039	343	hypothetical protein; Validated	82.68
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	82.61
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	82.61
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	82.58
PRK00846	77	hypothetical protein; Provisional	81.94
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	81.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	81.93
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.86
PRK03918	880	chromosome segregation protein; Provisional	81.84
PRK04325	74	hypothetical protein; Provisional	81.83
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.65
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.63
COG2433	652	Uncharacterized conserved protein [Function unknow	81.55
KOG2010	405	consensus Double stranded RNA binding protein [Gen	81.48
PHA02562	562	46 endonuclease subunit; Provisional	81.33
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	81.31
PRK14127	109	cell division protein GpsB; Provisional	81.13
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.12
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.03
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.96
PRK14160	211	heat shock protein GrpE; Provisional	80.95
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	80.93
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	80.87
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	80.86
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	80.56
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.34
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	80.31
smart00340	44	HALZ homeobox associated leucin zipper.	80.3
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	80.2

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=100.00  E-value=8.8e-72  Score=511.45  Aligned_cols=179  Identities=61%  Similarity=1.051  Sum_probs=168.3

Q ss_pred             CCCCCCCCCcCCCCCCCCCCCCCCCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC--C
Q 016610            1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y   78 (386)
Q Consensus         1 MG~~e~~~~~k~~K~ss~~~~~~~~~~~ypDWs~mQAYygp~~~~pp~f~s~vas~~~phPYmWG~~qpmmppyGtP--Y   78 (386)
                      ||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||+++||++|+|||||||+|||||||||||  |
T Consensus         1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY   79 (189)
T PF07777_consen    1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY   79 (189)
T ss_pred             CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence            999999999999999887655899999999999999999999 8899999999999999999999999999999997  9


Q ss_pred             ccccCCCccccCCCCCCCCCCCCCCCCCCCC--CCCCCCcCC-CCCCCCCcccchhhhhcccC-CcccccCCCCCCCCCC
Q 016610           79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG  154 (386)
Q Consensus        79 ~a~Yp~GgvYaHP~~p~g~~p~~~~~~~sp~--~~tp~s~e~-~~k~~~~~~~~~~Kk~Kg~~-g~~m~~g~~~~~~~~~  154 (386)
                      +||||||||||||+||+|+|||++++++++.  ++||+++|+ ++|++++|||+++||||||| ||+|++|||+.+++++
T Consensus        80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~  159 (189)
T PF07777_consen   80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG  159 (189)
T ss_pred             ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence            9999999999999999999999999999854  478999999 69999999999999999999 6999999999999998


Q ss_pred             C-CCCCCCCc-C--CCCCCCCCCCCCcccc
Q 016610          155 G-AEQRPSQS-E--ADGSTDGSDGNTVRAG  180 (386)
Q Consensus       155 ~-~~~~~sqS-~--segssdgsd~n~~~~~  180 (386)
                      + +|++.||| |  +||||||||+|+++++
T Consensus       160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~  189 (189)
T PF07777_consen  160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS  189 (189)
T ss_pred             CCCCCccCccccccccccccCcCccccCCC
Confidence            5 58899997 3  7999999999999874

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.48  E-value=2.3e-13  Score=104.89  Aligned_cols=64  Identities=52%  Similarity=0.702  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  306 (386)
Q Consensus       243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~  306 (386)
                      |++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4677899999999999999999999999999999999999999999999999999999998873

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=99.42  E-value=9.7e-13  Score=101.51  Aligned_cols=61  Identities=56%  Similarity=0.732  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN  305 (386)
Q Consensus       245 ElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN  305 (386)
                      +.|+.||+++||+||++||.||++|+.+|+.+|..|+.+|..|+.++..|..++..|..+|
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999888777776665

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.28  E-value=6.6e-12  Score=122.89  Aligned_cols=67  Identities=33%  Similarity=0.334  Sum_probs=60.8

Q ss_pred             CCCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          234 LPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  300 (386)
Q Consensus       234 ~~~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~  300 (386)
                      +.+...+.||.-+||+-|+++|||+||.||+|||+|+.+||.||.+|+.+|..|-+||..|++.+..
T Consensus       278 ltsp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~  344 (348)
T KOG3584|consen  278 LTSPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH  344 (348)
T ss_pred             ccCCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            4345567799999999999999999999999999999999999999999999999999999886643

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.22  E-value=3e-11  Score=125.72  Aligned_cols=70  Identities=34%  Similarity=0.415  Sum_probs=67.0

Q ss_pred             cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       241 qdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      -|.+-+||+.||++|||||..||+|||+|++.||.++..|.+||..|+.|...|++++..|..||..|+-
T Consensus       275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            3788999999999999999999999999999999999999999999999999999999999999998864

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.15  E-value=2e-10  Score=110.18  Aligned_cols=71  Identities=35%  Similarity=0.420  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       245 ElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |+|-+|||++||.+|+-+|.|||+++++|+.++.+|+.||..|+.|...|++..+.|..+|..|..+|..+
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~  137 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL  137 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999998888854

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.14  E-value=6.2e-11  Score=121.77  Aligned_cols=81  Identities=30%  Similarity=0.399  Sum_probs=65.3

Q ss_pred             CCCCcccc--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          234 LPPETWIQ--NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  311 (386)
Q Consensus       234 ~~~e~~lq--dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq  311 (386)
                      +|....++  +|+.+||.|||++|++||+.||+|||+|++.||.||....+||++|++++.+|..++..|.++.+.|...
T Consensus       236 lPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~  315 (472)
T KOG0709|consen  236 LPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL  315 (472)
T ss_pred             CcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34444443  8999999999999999999999999999999999999999999999999988766555555554444444


Q ss_pred             HHH
Q 016610          312 LKS  314 (386)
Q Consensus       312 L~~  314 (386)
                      +.+
T Consensus       316 v~q  318 (472)
T KOG0709|consen  316 VIQ  318 (472)
T ss_pred             Hhh
Confidence            443

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.11  E-value=4.5e-10  Score=84.40  Aligned_cols=51  Identities=53%  Similarity=0.730  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      .++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..+|..|+.+
T Consensus         4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3566777 99999999999999999999999999999999999999988653

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.58  E-value=2.2e-07  Score=90.37  Aligned_cols=65  Identities=31%  Similarity=0.418  Sum_probs=57.6

Q ss_pred             CCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          236 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  300 (386)
Q Consensus       236 ~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~  300 (386)
                      ....++++..+|-+|.+++|||+|++||.||.+++.+||.+|..|..+|..|..++..|++.+.+
T Consensus       195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e  259 (279)
T KOG0837|consen  195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAE  259 (279)
T ss_pred             CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999999999999999999998888665433

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.38  E-value=4.4e-09  Score=86.86  Aligned_cols=68  Identities=31%  Similarity=0.489  Sum_probs=56.3

Q ss_pred             cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  308 (386)
Q Consensus       241 qdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L  308 (386)
                      .+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..+..++..+...+..|
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L   91 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL   91 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677899999999999999999999999999999999988888888887777776665555544444

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=98.00  E-value=2.3e-05  Score=76.31  Aligned_cols=52  Identities=31%  Similarity=0.593  Sum_probs=45.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      |+.+|-++|||||.+.+...+++..||..|++||..|+.+|.+|+.++..|+
T Consensus       198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~  249 (269)
T KOG3119|consen  198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR  249 (269)
T ss_pred             HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446999999999999999999999999999999999999998876544443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.89  E-value=7.3e-05  Score=73.98  Aligned_cols=53  Identities=32%  Similarity=0.494  Sum_probs=44.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      |.++.|..+|-|-|+||+++.+.|+.+++.|+.+|.+|+.++..|.++++.|+
T Consensus       230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK  282 (294)
T KOG4571|consen  230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK  282 (294)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677899999999999999999999999999999998888766555544

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.68  E-value=0.00034  Score=62.36  Aligned_cols=70  Identities=30%  Similarity=0.450  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610          242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG  318 (386)
Q Consensus       242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~  318 (386)
                      +--.+|..||-++||=-|+-||-|+-..-++||.       +|..|..+|..|++++..+..|...|+.+...|+-.
T Consensus        48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~-------~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~  117 (135)
T KOG4196|consen   48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEK-------EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS  117 (135)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456889999999999999999999876666554       555566666666666666777777888888777533

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.19  E-value=0.00068  Score=72.81  Aligned_cols=63  Identities=25%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL  309 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk  309 (386)
                      |-.||+=+||.||++||.||-.-|..||..|+.|+.|-..|.+|-..+...+..+..+...|-
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~  552 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY  552 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788899999999999999999999999999988888887776666555544444444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.74  E-value=0.02  Score=54.32  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          243 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       243 ErElKR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      |+++...+-++.| +..........++.+++++..+..|+++|..|++++..++.+++.|+.||..|+..+..
T Consensus        99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~  171 (206)
T PRK10884         99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM  171 (206)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555544444 22222333334555666777777778888888888877777777777777777776654

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.57  E-value=0.011  Score=50.91  Aligned_cols=50  Identities=28%  Similarity=0.487  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      ..+.+|++++..|-.+...|+..+..|.+++..|+.||..||++|..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999998754

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.26  E-value=0.021  Score=49.62  Aligned_cols=48  Identities=29%  Similarity=0.466  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ..+..|++++..|..+...|+..+..|.+++..|+.||..||++|..+
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457889999999999999999999999999999999999999999986

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=96.21  E-value=0.029  Score=46.35  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -++|..++..|+.....|..++...+++|.+|+.||..|..-|.+|
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999999999999999999999999999998

The exact function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.19  E-value=0.035  Score=44.89  Aligned_cols=49  Identities=27%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +.++.||.+|..+-..+..|+.++..|+++...|..+|..|+++...++
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3567777777777777777777777777776666666666666666554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.42  E-value=0.063  Score=49.63  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=47.0

Q ss_pred             ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELS---RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE---~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+++-++.+..|+..+|....-+=.-=-..|..|.   .....|..||..|+.++..|++++..|+.||..|..++..++
T Consensus        59 Y~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~  138 (161)
T TIGR02894        59 YEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE  138 (161)
T ss_pred             HHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666666655322111111112233333   346677788888888888888888888888888888777664

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=95.39  E-value=0.074  Score=56.29  Aligned_cols=49  Identities=29%  Similarity=0.358  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |...++||++++.|++|...|.++...+++++++|+.||+.|+++++.+
T Consensus        75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~  123 (475)
T PRK13729         75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL  123 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            3478999999999999999999999999999999999999999999653

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.34  E-value=0.26  Score=46.92  Aligned_cols=62  Identities=16%  Similarity=0.026  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016610          261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE  322 (386)
Q Consensus       261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~E  322 (386)
                      ..+..-+++..+|+++++.+..+...|..++.+|++++..+..|+..|++++..++.....+
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~  172 (206)
T PRK10884        111 NIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ  172 (206)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344456777888888888888888888888888888888888888888888776544333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.23  E-value=0.071  Score=43.57  Aligned_cols=48  Identities=27%  Similarity=0.358  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      -+.-|+-+|++|+.+|..|..++..++...+.|+.||.+|+++-..-|
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ   66 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ   66 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677889999999999999999999999999999999998766543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.10  E-value=0.11  Score=41.54  Aligned_cols=45  Identities=33%  Similarity=0.415  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +..|+.+|+.|-..-..|+.++..|+++...+..|+..|.++...
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~   46 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ   46 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555554

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.08  E-value=0.15  Score=40.70  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.++.|-..++.|+.||..|+.++..+..+-..|...|..=+.+|..+
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568889999999999999999999999999999999999999988875

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=94.86  E-value=0.14  Score=40.58  Aligned_cols=50  Identities=20%  Similarity=0.277  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+++++||.++..++.-...|...+....+++..|+.+...|.++|..++
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999999876

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.80  E-value=0.21  Score=40.37  Aligned_cols=45  Identities=36%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +.-|+.+++.|+.+|..|..+...|++++.+|+.|-.....+|..
T Consensus        20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.66  E-value=0.19  Score=49.20  Aligned_cols=55  Identities=27%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +-++--++.++++..+.+.|..+|..|..+++.+++++..|+-||+.|.+.+..+
T Consensus       135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l  189 (290)
T COG4026         135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL  189 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445667777788888888888888888888889999999999998888865

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.62  E-value=0.6  Score=43.22  Aligned_cols=68  Identities=24%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.+.....+..-+.-......++.++..-++.|..|...|.-++..+.+++.+|+.||..|-+++...
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555556667777888888888888888888888888889999999999998888764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.47  E-value=0.13  Score=45.01  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ..+.+|++++.+|-++...|++.+..|-++...|+.||.-||++|..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45678889999999999999999999999999999999999998887

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=94.35  E-value=0.85  Score=38.11  Aligned_cols=74  Identities=24%  Similarity=0.355  Sum_probs=67.4

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -|.-++|..+++.+=|++=..|.-+.....+|+.++..|..+...|-.++.....++.+|+.-|..+..+|..+
T Consensus         6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen    6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888999999898888888888888999999999999999999999999999999999999999999865

>PRK00295 hypothetical protein; Provisional

Probab=94.13  E-value=0.37  Score=38.40  Aligned_cols=49  Identities=18%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +++++||.++..++.-...|-..|.+..+++..|+.+.+.|..+|+.++
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4599999999999999999999999999999999999999999999875

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.12  E-value=0.34  Score=38.97  Aligned_cols=51  Identities=25%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      .+++.+||.++..++.-...|-+.|.+.++++..|..+.+.|..+|..++.
T Consensus         7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            357899999999999999999999999999999999999999999988753

>PRK02119 hypothetical protein; Provisional

Probab=94.06  E-value=0.34  Score=39.15  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+++.+||.++..++.-...|-..|.+.++++..|+.+.+.|.++|+.++
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999999999999999999999999999998865

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=94.04  E-value=0.53  Score=46.43  Aligned_cols=48  Identities=25%  Similarity=0.301  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .++.+|+++-+.|..||..|+.....|--+.++|.++...|++.|.++
T Consensus        97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            356799999999999999999999999999999999999999999987

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=94.03  E-value=0.0024  Score=65.31  Aligned_cols=62  Identities=31%  Similarity=0.429  Sum_probs=52.9

Q ss_pred             ccchHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 016610          240 IQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKL  301 (386)
Q Consensus       240 lqdErElKR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~Le-~EN~~Lr~el~~L~ee~~~L  301 (386)
                      +-.|.+.||.+|+++|+.+|.+   ||-|++....+|+.+|+.|+ .+|..|..+|..|+.+.+.|
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l  212 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL  212 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence            3467788899999999999999   99999999999999999999 88888777777765544443

>PRK04325 hypothetical protein; Provisional

Probab=94.02  E-value=0.37  Score=38.94  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +++++||.++..++.-...|-..|...++++..|+.+.+.|..+|++++
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4589999999999999999999999999999999999999999998875

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.97  E-value=0.3  Score=40.52  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+.=|+-+|++|+.+|..|..++..++.....|+.||..|+++...-+
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq   66 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ   66 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            445567788888888888888888877777788888888888777654

>PRK00736 hypothetical protein; Provisional

Probab=93.96  E-value=0.41  Score=38.15  Aligned_cols=50  Identities=20%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      +++++||.++..++.-...|-+.|.+-.+++..|..+.+.|.++|+..+.
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45999999999999999999999999999999999999999999988653

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=93.92  E-value=0.19  Score=37.36  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +|+.+-..|+.....|+.+++.|..||..|++++..+.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666666666666667777777777776653

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK04406 hypothetical protein; Provisional

Probab=93.75  E-value=0.44  Score=38.76  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +++.+||.++..++.-...|-..+...++++..|+.+.+.|.++|..++
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5788899999988888889999999988899999999999988888765

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.75  E-value=1.1  Score=39.56  Aligned_cols=70  Identities=24%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.+..|-...||..-....++...++.|+..++.|+.++..+..++..+..+...|..++..+...++..
T Consensus        44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~  113 (151)
T PF11559_consen   44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE  113 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556777777777787778887777777777777777777777666666666666555555543

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.58  E-value=0.83  Score=43.72  Aligned_cols=45  Identities=24%  Similarity=0.220  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+|..+++.|+.|...|...+..|...+..++.+...|.+++.++
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=93.25  E-value=0.38  Score=41.57  Aligned_cols=46  Identities=26%  Similarity=0.305  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      +|=.++..|++....|..++..|+.++..|..||..|+-+...|+.
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~   50 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE   50 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999999999999999999999999863

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=93.22  E-value=0.18  Score=49.63  Aligned_cols=40  Identities=38%  Similarity=0.443  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 016610          276 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSA  315 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~ee~~----~L~sEN~~LkeqL~~l  315 (386)
                      .+..|.+||.+|++|+..|++++.    .|+.||++||+.|.-.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            455677788888887766644433    4899999999987753

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.04  E-value=1.9  Score=39.08  Aligned_cols=66  Identities=26%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..+.|++.+-+--.-+++.++.|+.++..|..+...|..++..|+.+...|..+....+.+|..|.
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777888888888888888888888888888877777777777777777777764

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK00846 hypothetical protein; Provisional

Probab=92.95  E-value=0.71  Score=38.06  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      .+++++||.++...+.-...|-..+......+..|+.+...|.++|++++.
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~   62 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   62 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467899999999999999999999999999999999999999999998863

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.86  E-value=0.78  Score=48.44  Aligned_cols=51  Identities=27%  Similarity=0.358  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      |--+.+-|+.++.+|+.||..||..+..|+..+++|..+-+.+.++|..++
T Consensus       295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr  345 (502)
T KOG0982|consen  295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR  345 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            444567788899999999999999999999999999888877777766653

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.62  E-value=1.7  Score=41.25  Aligned_cols=50  Identities=26%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ...+.++++++.+++.|+.+...++.++..+++++.+++.++...+..|.
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555554444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11637 AmiB activator; Provisional

Probab=92.30  E-value=1.8  Score=44.45  Aligned_cols=51  Identities=14%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .-+.+++.|+.++..++.+...+..+|..+..++..|+.+...|+.+|...
T Consensus        72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666666666555565666666665555555555555555554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.28  E-value=0.83  Score=37.49  Aligned_cols=51  Identities=29%  Similarity=0.380  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ==|-++++|..+-..|..|.+.++.....|..+.++|..|...-.++|..|
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777777777777777777776655

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.24  E-value=0.78  Score=38.12  Aligned_cols=38  Identities=37%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA  307 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~  307 (386)
                      ++.||.+|...-..+.-|+-||..|+++...|..|+..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555444

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=92.20  E-value=0.96  Score=43.61  Aligned_cols=40  Identities=35%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 016610          276 KVDSLIDENASLKSEINQLSENSE---KLRQENAALLEKLKSA  315 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~ee~~---~L~sEN~~LkeqL~~l  315 (386)
                      ....|.+||..|++|+..|+.+..   .|+.||..|++.|...
T Consensus        70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~  112 (276)
T PRK13922         70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK  112 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            344555555556655555555444   6799999999987743

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.15  E-value=0.79  Score=41.36  Aligned_cols=52  Identities=40%  Similarity=0.420  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el--~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      -++++.+|+.++..|+.+...|...+  ..|...+..|+.|+..|.++|..|+.
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566667777777777777766665  56778889999999999999998875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.14  E-value=1.1  Score=49.59  Aligned_cols=41  Identities=24%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  311 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq  311 (386)
                      |-+.+|..+|+.|...|+.++....+++..|+.|.+.|+..
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33667778888888888888888888888777777766654

; GO: 0016021 integral to membrane

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=92.10  E-value=0.63  Score=40.51  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +|-+|..-...|.+++..++++..+|++||+.|-+.|++|
T Consensus        64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL  103 (120)
T KOG3650|consen   64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence            3445555555666777777788888899999999999887

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=92.09  E-value=0.23  Score=46.07  Aligned_cols=42  Identities=33%  Similarity=0.550  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |+++|.++.+--++|.-|..||    ++-+.|+.+++.||.++.+|
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDL   43 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDL   43 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888877    33444555555555555554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PRK11637 AmiB activator; Provisional

Probab=91.95  E-value=1.9  Score=44.38  Aligned_cols=57  Identities=9%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .......+.++.+++.+++.|..+...+..+|..+++++..+..+...|..+|..++
T Consensus        60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q  116 (428)
T PRK11637         60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE  116 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334445556666666666666666666666666666666666666666666664

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=91.90  E-value=0.75  Score=44.45  Aligned_cols=47  Identities=21%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +.++++.+.+.+.++.++..|+++.+.+..+++.|..|++.|+++|.
T Consensus       164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            34444445555555556666666666666666666667766666664

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=91.82  E-value=0.72  Score=45.06  Aligned_cols=44  Identities=30%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610          276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  319 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~  319 (386)
                      |+.+||+|+..+..++..|+.+++.|+..|-.|-+++.=+|-..
T Consensus        94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~  137 (248)
T PF08172_consen   94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN  137 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            35566666666677777777777778889999999999987555

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=91.51  E-value=0.87  Score=33.82  Aligned_cols=41  Identities=44%  Similarity=0.552  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ||...+.|++.-..|+.+...|.++.+.|++|...|+.++.
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56667777777777777777777777777778887777764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=91.50  E-value=0.67  Score=41.79  Aligned_cols=50  Identities=26%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          266 KQAEAEELSRKVDSLIDEN-------------ASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN-------------~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -++++-.|.++-..|+..-             .+|..+...|.+++++|..||+.++.++..+
T Consensus        45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~  107 (135)
T KOG4196|consen   45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAY  107 (135)
T ss_pred             CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555433             3455555555666666666666666555554

>smart00338 BRLZ basic region leucin zipper

Probab=91.50  E-value=1.9  Score=33.15  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566777777777888888887777777777777777653

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=91.33  E-value=0.91  Score=39.61  Aligned_cols=47  Identities=23%  Similarity=0.240  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      .+|=.++..|++....|..++..|++.+..|..||..|+-+-..|+.
T Consensus         4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~   50 (110)
T PRK13169          4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE   50 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999888863

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=90.75  E-value=1.2  Score=37.44  Aligned_cols=39  Identities=38%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 016610          278 DSLIDENASLKSEINQLSENS------EKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       278 e~Le~EN~~Lr~el~~L~ee~------~~L~sEN~~LkeqL~~lq  316 (386)
                      ..|..+|..|..||..|+.++      .+...||.+|++++..++
T Consensus        20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~   64 (86)
T PF12711_consen   20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ   64 (86)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888888887644      568899999999999886

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.74  E-value=4.2  Score=38.96  Aligned_cols=54  Identities=19%  Similarity=0.231  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       262 SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+......+
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777888888888888888888888888888877777776655554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=90.69  E-value=3  Score=32.03  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  311 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq  311 (386)
                      ..++.|+.+...|..++..|..++..|..++..|+.+
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555555555555555555555555555444

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.66  E-value=4.6  Score=35.69  Aligned_cols=44  Identities=25%  Similarity=0.268  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ++.|+.+++.++.++..+..+...|+.++..+...+..+++++.
T Consensus        75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~  118 (151)
T PF11559_consen   75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ  118 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=90.59  E-value=0.35  Score=45.51  Aligned_cols=42  Identities=31%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS  295 (386)
Q Consensus       248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~  295 (386)
                      |.+|+.+++      -+..++++.+|+.+|+.|+.+..++++.+..|-
T Consensus        92 R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~  133 (181)
T KOG3335|consen   92 RQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH  133 (181)
T ss_pred             Hhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666665      355667788888888888775555555555543

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.52  E-value=0.95  Score=48.15  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          284 NASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      ..+|.++.++|+++..+|......|..+|
T Consensus       111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752       111 TQELTKEIEQLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=90.49  E-value=2.5  Score=33.12  Aligned_cols=48  Identities=25%  Similarity=0.385  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.+++|...|..|..+...|..++..|+..+.....|-..-.++|.++
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~   50 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            457788888888888888888888888888777777777777777654

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=90.44  E-value=1.1  Score=38.37  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      .+.++++++++++++.|+++|..|+.++..|+.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            345556666677777777777777777666654

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.32  E-value=2.1  Score=34.43  Aligned_cols=48  Identities=31%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSE-------INQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~e-------l~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+++.|..++.....+|..|+.+       +.....++.+|..||..|+.+|...
T Consensus        12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555544       4555556666666666666666554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.15  E-value=1.5  Score=39.31  Aligned_cols=49  Identities=41%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +...++|+.++..|+.++..+..+|..|+.++..|+.+...|..+|..+
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~   61 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA   61 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666666666666666654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.52  E-value=2.4  Score=33.99  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQL  294 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L  294 (386)
                      |..+.+.|..+|.....++..|
T Consensus        10 Lr~rLd~~~rk~~~~~~~~k~L   31 (69)
T PF14197_consen   10 LRNRLDSLTRKNSVHEIENKRL   31 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=89.37  E-value=0.46  Score=37.47  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          282 DENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .|...|+.+|..|.+++.+|+.||..||+...-
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p   46 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP   46 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            455567777777777888888899999876554

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=89.23  E-value=0.2  Score=42.54  Aligned_cols=50  Identities=38%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..+|+.|...+..|..+|..|..++..|..++..+..+...|+..|...+
T Consensus        24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq   73 (131)
T PF05103_consen   24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence            36889999999999999999999999999999999999999988886553

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.00  E-value=1.5  Score=47.51  Aligned_cols=69  Identities=26%  Similarity=0.375  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhc
Q 016610          257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVL  325 (386)
Q Consensus       257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~  325 (386)
                      +.+.+.|..-++.+.++..++..|+++...++..+..|.++...|+.||..|+.+|..++.....|+.+
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll  198 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL  198 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            344455555566677777888888888888888888888888888888888888888876555555544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.83  E-value=3.9  Score=40.14  Aligned_cols=50  Identities=28%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ...++..|..++..++.+...|..++..|..+...|+.+...|+.++..+
T Consensus        87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579          87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666666666666666666666666666666666654

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.82  E-value=0.55  Score=49.76  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             CCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCC--CCccccCC
Q 016610           44 AIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST   84 (386)
Q Consensus        44 ~~p-p~f~s~vas~~~phPYmWG~~qpmmppyGt--PY~a~Yp~   84 (386)
                      ++| |+|+.+     ++||.+    +.+.+.||-  ||-+|||-
T Consensus       420 ppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~  454 (483)
T KOG2236|consen  420 PPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA  454 (483)
T ss_pred             CCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence            444 677544     667754    445566765  87777754

>PRK02119 hypothetical protein; Provisional

Probab=88.80  E-value=3.1  Score=33.64  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGN  319 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l--ql~~  319 (386)
                      ++..|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|  ++..
T Consensus         3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999988  4444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=88.77  E-value=3.4  Score=40.37  Aligned_cols=47  Identities=11%  Similarity=0.169  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -+.+|..+++.|+.|+..|+-+|+++.-+++++....+.|-.+|..+
T Consensus        55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888888888888888888888888888887777764

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.74  E-value=4.1  Score=42.44  Aligned_cols=28  Identities=18%  Similarity=0.324  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          277 VDSLIDENASLKSEINQLSENSEKLRQE  304 (386)
Q Consensus       277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sE  304 (386)
                      ++.|+.++..+..++..|.+++..+..+
T Consensus       367 i~~l~~~~~~~~~~l~~l~~~l~~~~~~  394 (562)
T PHA02562        367 IEELQAEFVDNAEELAKLQDELDKIVKT  394 (562)
T ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=88.70  E-value=0.097  Score=53.77  Aligned_cols=41  Identities=34%  Similarity=0.426  Sum_probs=38.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK  288 (386)
Q Consensus       248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr  288 (386)
                      |.|=..+||.+|-|||.|||.....|+.+.+.+..+|..|.
T Consensus       286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            36678899999999999999999999999999999999988

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.67  E-value=7.8  Score=36.61  Aligned_cols=61  Identities=23%  Similarity=0.344  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      .+++....++.+.+-+.-+.+-..-+..+..++.++..|+-++..|..++..|.++...|.
T Consensus        67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667777778877777776676777777777777777777777777777766665554

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=88.57  E-value=6.6  Score=37.03  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=13.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          252 KQSNRESARRSRLRKQAEAEELSRKVDSL  280 (386)
Q Consensus       252 k~sNRESARRSRlRKqa~leeLE~rVe~L  280 (386)
                      ++....+-+..+...+.+...|+.++..-
T Consensus        94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen   94 RLNKLLSLKDDQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33334444444444555555555444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.57  E-value=5.1  Score=42.26  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=56.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG  318 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~  318 (386)
                      +|++-.+++=+.-.++....+.+...|+.++..|+.++..|..++......+.+++..+..+...|..|+..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            444445555555556666677788899999999999999999999998888888888888888888887533

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=88.54  E-value=1.8  Score=47.55  Aligned_cols=53  Identities=25%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  319 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~  319 (386)
                      ..++.+||.+-.+|.+|..++..+++.|++.+.+...|..+|+-.|...|...
T Consensus        92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~  144 (907)
T KOG2264|consen   92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL  144 (907)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence            46788899999999999999999999999988888888888888888776444

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=88.52  E-value=3.6  Score=39.91  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      |+++.+.+.++-..|+.+++....+++.+..++..|+.+.+.++
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~  192 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ  192 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            55566666666666666666666666667777777777766653

>PRK04406 hypothetical protein; Provisional

Probab=88.44  E-value=3.5  Score=33.59  Aligned_cols=46  Identities=15%  Similarity=0.217  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ++.|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999988

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.43  E-value=5.6  Score=43.23  Aligned_cols=12  Identities=25%  Similarity=0.744  Sum_probs=5.3

Q ss_pred             CCCCCCCCCCcc
Q 016610           53 IASGHAPQPYMW   64 (386)
Q Consensus        53 vas~~~phPYmW   64 (386)
                      +.+...||++=|
T Consensus        28 lt~~~~ps~~DW   39 (546)
T PF07888_consen   28 LTPGFHPSSKDW   39 (546)
T ss_pred             cCCCCCCCCCCe
Confidence            333344445444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=88.37  E-value=3  Score=38.99  Aligned_cols=51  Identities=24%  Similarity=0.276  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+.++.+.+|+.+++.+......- .+-..+-+++..|+.++..|+.+|..+
T Consensus        79 ~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~  129 (188)
T PF03962_consen   79 EELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY  129 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555443322111 222233345555666666666666644

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=88.28  E-value=3.1  Score=41.71  Aligned_cols=93  Identities=23%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh-----ccccchhhcccccCC
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENS-----------EKLRQENAALLEKLKSAQ-----LGNKQEIVLNEDKRV  331 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~-----------~~L~sEN~~LkeqL~~lq-----l~~~~Ev~~~~~~~~  331 (386)
                      .+|++|+.+...|+.+|+.|+-|+.+++++.           ..|+.+|..+++.-..++     +.+..+. +.-.++.
T Consensus        52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd-LErakRa  130 (333)
T KOG1853|consen   52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD-LERAKRA  130 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHhhhh
Confidence            4566667777777777777777777766533           346666665555444442     2222222 1134677


Q ss_pred             CCcchHHHhhhccCCCCCcCcccccccccccC
Q 016610          332 TPVSTENLLSRVNNSGTVDRNMEEGGHLFEKN  363 (386)
Q Consensus       332 ~p~~~e~lls~vd~~~~~~~~~~~~~~~~~~~  363 (386)
                      .-++.++|-+++|..  ..|+.--|.+++|+.
T Consensus       131 ti~sleDfeqrLnqA--IErnAfLESELdEke  160 (333)
T KOG1853|consen  131 TIYSLEDFEQRLNQA--IERNAFLESELDEKE  160 (333)
T ss_pred             hhhhHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence            778899999998853  334444455555554

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.21  E-value=1.7  Score=47.63  Aligned_cols=45  Identities=29%  Similarity=0.462  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ++..|+.+|+.|+.||..|..++.+|+.++..|+++...++.++.
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666655555544

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=88.12  E-value=6.4  Score=37.45  Aligned_cols=55  Identities=24%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      --+.||..+++ ...++..|+.+=..|..++-.+...|..|+.|...|+.+...++
T Consensus       162 vN~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~  216 (221)
T PF05700_consen  162 VNRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK  216 (221)
T ss_pred             HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555444 66777788888888888888888888888888888888777653

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.07  E-value=4.8  Score=40.24  Aligned_cols=47  Identities=26%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .+++.|..++..+..++..++.++..|+.++..+..+...+.+++..
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~  255 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE  255 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555544444444444444444444443333333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.04  E-value=1.4  Score=44.67  Aligned_cols=46  Identities=35%  Similarity=0.468  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ++|..++..|+++|..|+.++..++.+|..|..||..||+....++
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~   68 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ   68 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777777777777777777777777777777766664

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.93  E-value=2.3  Score=36.38  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          274 SRKVDSLIDENASL--KSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       274 E~rVe~Le~EN~~L--r~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.|+..|+.+...|  +.++..|+-++.+++-+...|.++|+.+
T Consensus        48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v   91 (106)
T PF10805_consen   48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV   91 (106)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44444444444444  4444444444444455555555555443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.77  E-value=4.4  Score=45.93  Aligned_cols=17  Identities=35%  Similarity=0.358  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 016610          298 SEKLRQENAALLEKLKS  314 (386)
Q Consensus       298 ~~~L~sEN~~LkeqL~~  314 (386)
                      ...|..|...|..++..
T Consensus       439 ~~ql~~eletLn~k~qq  455 (1118)
T KOG1029|consen  439 KKQLQQELETLNFKLQQ  455 (1118)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.75  E-value=3.8  Score=36.18  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQL  294 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L  294 (386)
                      |..++..|+.+-..|..||-.|
T Consensus        35 l~~el~~l~~~r~~l~~Eiv~l   56 (120)
T PF12325_consen   35 LQEELARLEAERDELREEIVKL   56 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.64  E-value=4.2  Score=33.37  Aligned_cols=52  Identities=23%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG  318 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~  318 (386)
                      .+++.+||.++..-+.-..+|...+...+..+.++..+.+.|-+++++++..
T Consensus         7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~   58 (72)
T COG2900           7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS   58 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3578899999998888889999999999999999999999999999988643

>PF15294 Leu_zip: Leucine zipper

Probab=87.57  E-value=1.7  Score=43.40  Aligned_cols=45  Identities=29%  Similarity=0.429  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      |..++..|..||..|+.++..+..+|.....|...|..+|.++|.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999999999986

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.55  E-value=8.4  Score=33.76  Aligned_cols=30  Identities=30%  Similarity=0.519  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          285 ASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ..|..++..+..+|..|..+|..|-.+|..
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345666666666667777777777666654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=87.41  E-value=4  Score=40.18  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             ccchHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          240 IQNERELKRERR----KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  300 (386)
Q Consensus       240 lqdErElKR~RR----k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~  300 (386)
                      ..+++...|+||    ..+-|..+|.--..-+.++.+|+.+.+.|+.++.+|++++..|+..+..
T Consensus       190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~  254 (269)
T KOG3119|consen  190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ  254 (269)
T ss_pred             cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444    2334555555555556667777777888888888888877777765544

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.21  E-value=5.2  Score=41.40  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      =.|-+.+...||.-+..|++||..|.-++..+.++|.+.+.|++.|..+|.+.
T Consensus       122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999998888875

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.19  E-value=2.8  Score=41.29  Aligned_cols=44  Identities=25%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      .++|..+.+.+.+||..|.+++..|+.++..+..+...|+.+..
T Consensus       137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s  180 (290)
T COG4026         137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS  180 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444443333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.14  E-value=2.6  Score=42.30  Aligned_cols=43  Identities=35%  Similarity=0.502  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ++++.+++.|+.|...|.+++..|..+...|..|...|+.++.
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~   88 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE   88 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=87.12  E-value=3  Score=33.95  Aligned_cols=47  Identities=34%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEK--------LRQENAALLEKLKSAQ  316 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~--------L~sEN~~LkeqL~~lq  316 (386)
                      +.+++..++.|+.||-.|+-+|-.|.+.+..        +..||-.|+..+..++
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~   56 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK   56 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            3567788888888888888888888776653        4666666776666664

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=87.07  E-value=2.4  Score=36.29  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE  304 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE  304 (386)
                      .+.+|+++++.++++|..|+.++..|++++..|...
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~   63 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            466788888888888888888888888888877753

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=87.00  E-value=3.9  Score=31.65  Aligned_cols=29  Identities=38%  Similarity=0.579  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQL  294 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L  294 (386)
                      .++++.+|+.+++.|+.+|..|..++..|
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455566666666666666666555555

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=86.91  E-value=8.9  Score=37.65  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=47.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHh
Q 016610          249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE---------NSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e---------e~~~L~sEN~~LkeqL~~l  315 (386)
                      .++.+.-.+.+++.=.-++.++++|+.+|..++.+...++.++..++.         ++..|..|...++.++..|
T Consensus        33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l  108 (239)
T COG1579          33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL  108 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            344445577778888888889999999999999988888888777654         3344555555555555554

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=86.86  E-value=2.7  Score=36.97  Aligned_cols=45  Identities=27%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +|=.+|..|+.....|..++..|++++..|..||..|+-+...|+
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR   49 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR   49 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence            455688999999999999999999999999999999999999986

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=86.82  E-value=7.8  Score=36.56  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+...++.+|+.++.+|+.+...|..+......++.+|..+.+.|.+.+.+.+
T Consensus       127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e  179 (190)
T PF05266_consen  127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE  179 (190)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666655665566666666666666666666666654

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=86.79  E-value=4.1  Score=41.51  Aligned_cols=49  Identities=22%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  319 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~  319 (386)
                      ..|..-+...+.+|..|..++..|++++.++..++..||+++...+++.
T Consensus        68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~  116 (319)
T PF09789_consen   68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD  116 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence            5677778888889999999999999999999999999999998876555

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=86.73  E-value=5.1  Score=36.83  Aligned_cols=37  Identities=35%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ++.++..+..|++.|++++.+.+.|...|+.|.+.++
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~  188 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ  188 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777888999999999999999999999998875

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=86.56  E-value=2.9  Score=32.64  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      +++||.++..|+.....++++++.|++.++++.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~   34 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIE   34 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666655555555555555444443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=86.53  E-value=2.8  Score=41.06  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      ++..|||+++..+..++..|+.|+..|+..+.+|-...+-|..--
T Consensus        93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~  137 (248)
T PF08172_consen   93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN  137 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            345788888888888888888888888888888888777765544

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=86.48  E-value=3.8  Score=34.64  Aligned_cols=43  Identities=35%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  308 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L  308 (386)
                      |+-|-...+.+|+.|+.+|..|..++..|+.++...+.|-..|
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L   82 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL   82 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445555555555555555555555444444444433

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=86.26  E-value=4.6  Score=40.77  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          245 ELKRERRKQSN---RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       245 ElKR~RRk~sN---RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      ..||+.||..-   |+--|+-++-=.-+|++|+.|-+.|+..-.+|.+||..|++-+.+..
T Consensus       229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666632   33333333333345666667777777777777777777766655443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=85.93  E-value=13  Score=35.23  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      +.+++.+++.|..+++.++.++..++.++..+++.+
T Consensus        65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   65 IEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.91  E-value=5.5  Score=32.07  Aligned_cols=52  Identities=21%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccch
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQE  322 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l--ql~~~~E  322 (386)
                      .+|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|  ++...++
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            468999999999999999999999999999999999999999988  4544433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.68  E-value=16  Score=33.27  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             cchHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          241 QNERELKRERRKQSN----RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       241 qdErElKR~RRk~sN----RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +-+.++||.+|...|    =++..|--.--+...+.+....+.-++++..|..++..+...+..|..|...|+.+-.++
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L   85 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL   85 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666655443    123333333344444444444444444555555555555444444444444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.60  E-value=3.2  Score=39.65  Aligned_cols=36  Identities=36%  Similarity=0.479  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |..||..|...+..+.+...+|..|+..|+.++..+
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~   55 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL   55 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.52  E-value=3.5  Score=41.57  Aligned_cols=73  Identities=27%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          243 ERELKRERRKQSNRE-----SARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       243 ErElKR~RRk~sNRE-----SARRSRlRK-qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |-|.|-.+=|++|..     ++..-..-- +..|++|+..+..|..++.....++.+++..+..|+.|...|+++|...
T Consensus        88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r  166 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR  166 (302)
T ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777777732     111111111 4455666666666666666666667777888888888888888888764

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=85.32  E-value=6.3  Score=36.31  Aligned_cols=16  Identities=31%  Similarity=0.461  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 016610          279 SLIDENASLKSEINQL  294 (386)
Q Consensus       279 ~Le~EN~~Lr~el~~L  294 (386)
                      .++.+...|...+..|
T Consensus        86 ~~~~e~k~L~~~v~~L  101 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQL  101 (158)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444433333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=85.27  E-value=2.8  Score=32.35  Aligned_cols=48  Identities=23%  Similarity=0.189  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ++..++||+.++..=.   ..=...-...+.++.+|+.||..|+++|.-+|
T Consensus         2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566667766654322   11112234455666777778888888877654

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=85.24  E-value=6.5  Score=45.65  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          259 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       259 ARRSRlRKqa~leeLE~rV-e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .++++.+....+.+++.+. ..|..+..++..++..|+++++.|+.++..|++++.++
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555 55555556666677777777777777777777777765

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.05  E-value=6  Score=43.19  Aligned_cols=48  Identities=31%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +.|+..|+.+...+......|..|+....++|+.|..+|..|+.+|..
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466777777777777777777777777777777777777777777763

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.97  E-value=6.7  Score=31.71  Aligned_cols=51  Identities=20%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -|.+.+..|..+-+.|......+...|..|+.++..++.+...|+.++..+
T Consensus         9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~   59 (74)
T PF12329_consen    9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL   59 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778888888888888888888888888888888888888887777765

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=84.93  E-value=4.2  Score=37.87  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL  301 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L  301 (386)
                      .+.++.+|+.+++.|+.+|..|.+++..+.+.+..|
T Consensus       109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L  144 (161)
T TIGR02894       109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL  144 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555554444444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=84.92  E-value=7.2  Score=34.19  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  306 (386)
Q Consensus       249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~  306 (386)
                      .+-++.-.|..+-|+..=..+-++|+..+..|+.+|..+.+.+..|+.++..+.....
T Consensus        18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le   75 (107)
T PF09304_consen   18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE   75 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666665555555666666666666666666666666655555544433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=84.82  E-value=1.5  Score=38.67  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          283 ENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       283 EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      |...|+.+|..|.+++..|+.||..||.
T Consensus        68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   68 EVEVLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334455555555555556666666664

>PRK00295 hypothetical protein; Provisional

Probab=84.82  E-value=6  Score=31.53  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |+.++..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L   45 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999988888888888888888888888888888887

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.57  E-value=19  Score=32.69  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 016610          276 KVDSLIDENASLKSEINQLS  295 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~  295 (386)
                      +++.++.....+.+++..|.
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=84.54  E-value=3.1  Score=35.87  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  311 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq  311 (386)
                      |...+..|+.++..+..++.+|++.+.++..+...|+.+
T Consensus        78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E  116 (118)
T PF13815_consen   78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455555555555555555555555555555555444

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.27  E-value=8.8  Score=39.71  Aligned_cols=51  Identities=25%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .|-+++++.|.++-++|..-.++|+.++++|+++...|......|+.++++
T Consensus       228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344556666666667777777777777777777777777777777777776

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=84.16  E-value=14  Score=36.94  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +.+++.++.++...+++...++.++...+.++..|+.+-..|...|..+.
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~  255 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777777777777777777777777777777776666553

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=84.05  E-value=8  Score=34.44  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .||..|+..|+.|+..+..-...|...+.-|+-.+...+.++..+.
T Consensus        28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~   73 (134)
T PF08232_consen   28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK   73 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4666777777777777777777777777778888888887777654

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=83.93  E-value=1.9  Score=44.46  Aligned_cols=25  Identities=44%  Similarity=0.351  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          277 VDSLIDENASLKSEINQLSENSEKL  301 (386)
Q Consensus       277 Ve~Le~EN~~Lr~el~~L~ee~~~L  301 (386)
                      ...|+.||..|++|++.|+.++++|
T Consensus        34 ~~aLr~EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   34 NFALRMENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.78  E-value=6.8  Score=37.48  Aligned_cols=40  Identities=33%  Similarity=0.488  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      |..++..|..+|..|..+...|+.+...|..++..|+.+|
T Consensus       100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            4444444444444444444444444444444444444444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.76  E-value=23  Score=31.15  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      ..--+.-.++|..+-+.|+.-+..|..+...+.+.+..|..+...++..|
T Consensus        25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.58  E-value=3.9  Score=36.87  Aligned_cols=48  Identities=33%  Similarity=0.468  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~--~~L~sEN~~LkeqL~~lq  316 (386)
                      ++.+|+.++..|+.++..|+.++..|....  .+|..+...|++++..++
T Consensus        80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~  129 (169)
T PF07106_consen   80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE  129 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            367788888888888888888777777654  667777777777777763

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=83.53  E-value=18  Score=30.30  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ++...++..+..=..|...+..|++++..|..|...-..++-.+....+.|..|+..|+..+..-
T Consensus         7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks   71 (96)
T PF08647_consen    7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS   71 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            55667777888888999999999999999999999999999999999999999999999888764

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=83.52  E-value=12  Score=29.71  Aligned_cols=44  Identities=14%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      |..++...+..|-.+.+++.....++..|..|...|+.++..++
T Consensus        16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444456677777777777777777777777777777777665

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=83.51  E-value=4.7  Score=42.13  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +.|..-|.|-.+--...|..++++..|...|+.+++++...-.-|..|+..||+-++.++
T Consensus       227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE  286 (561)
T KOG1103|consen  227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE  286 (561)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            455556666666667777888888999999999999999999999999999999988874

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=83.49  E-value=4.1  Score=31.81  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +++|+.+...|...+..++.+++.|..+...|.+-+++
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555444444444444444444433

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=83.45  E-value=19  Score=28.56  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ  303 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s  303 (386)
                      +.-...++.++...+..|..|..+|..|+++++.+++
T Consensus        24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344566777778888888888888888877777664

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=83.29  E-value=20  Score=32.00  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          270 AEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       270 leeLE~rVe~Le~EN-~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +..|+.....|..+. ..++.++..|--.+..+...+..+|.+|+.|
T Consensus        64 ~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L  110 (136)
T PF04871_consen   64 VKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL  110 (136)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence            333444444444333 3444555555555566677777777777765

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=83.15  E-value=4.8  Score=36.15  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +....+-+..|+.||..|+..+..+++.++.=+.....|+++|+..|
T Consensus        80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q  126 (126)
T PF13118_consen   80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ  126 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            44455667899999999999999999999999999999999998654

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.02  E-value=17  Score=33.76  Aligned_cols=47  Identities=21%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +..|+.++..|+.+...+..-+..|+.++..|..++..|.+++..++
T Consensus       125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen  125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444445555555555555555555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK09039 hypothetical protein; Validated

Probab=82.68  E-value=9.5  Score=38.74  Aligned_cols=16  Identities=25%  Similarity=0.401  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 016610          280 LIDENASLKSEINQLS  295 (386)
Q Consensus       280 Le~EN~~Lr~el~~L~  295 (386)
                      |+++...|+.++..|+
T Consensus       142 L~~qI~aLr~Qla~le  157 (343)
T PRK09039        142 LNQQIAALRRQLAALE  157 (343)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=82.61  E-value=10  Score=36.35  Aligned_cols=75  Identities=24%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 016610          242 NERELKRERRKQSNRESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSEK-----------------  300 (386)
Q Consensus       242 dErElKR~RRk~sNRESARRSRlRKqa~----leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~-----------------  300 (386)
                      -|.-.+|.||-...+.++-.-+-+=-++    +...-.++..|+..|..|..+...|+..|.-                 
T Consensus        18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQr   97 (195)
T PF10226_consen   18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQR   97 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHH
Confidence            4566788888888888775444433332    2333355677888888888888888776643                 


Q ss_pred             --------HHHHHHHHHHHHHHhh
Q 016610          301 --------LRQENAALLEKLKSAQ  316 (386)
Q Consensus       301 --------L~sEN~~LkeqL~~lq  316 (386)
                              ++.|.....++|++|+
T Consensus        98 FGryta~vmr~eV~~Y~~KL~eLE  121 (195)
T PF10226_consen   98 FGRYTASVMRQEVAQYQQKLKELE  121 (195)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Confidence                    4556677777777773

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=82.61  E-value=20  Score=33.83  Aligned_cols=46  Identities=33%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .+..+..++..++.+...|+-+...|.++|.+|+.|-..|..+...
T Consensus        87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~  132 (201)
T PF13851_consen   87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES  132 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555555555555555555544444

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=82.58  E-value=3.9  Score=44.34  Aligned_cols=75  Identities=17%  Similarity=0.323  Sum_probs=44.0

Q ss_pred             ccchHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          240 IQNERELKRERR---KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       240 lqdErElKR~RR---k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ++..++.++.++   ..+++..+|...+-+++.+++++++++.|+..+=.=-.++.+..+++++|..|-+..++++..
T Consensus       160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~  237 (555)
T TIGR03545       160 LKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS  237 (555)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555454444444   445677777788878889999999999999862222223334444444444444444444443

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PRK00846 hypothetical protein; Provisional

Probab=81.94  E-value=9.4  Score=31.54  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -++|+.|+..|+........-|..|.+.+.+...+...|+.+|..+
T Consensus         8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L   53 (77)
T PRK00846          8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL   53 (77)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999998876

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=81.94  E-value=21  Score=35.49  Aligned_cols=81  Identities=21%  Similarity=0.250  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          244 RELKRERRKQSNRESARRSRLRKQAEAEE---------LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       244 rElKR~RRk~sNRESARRSRlRKqa~lee---------LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .++.+.++++...-+.+  +..|++.+..         +...+..+..+|..+.+++..-++.+..|+.+...|+++++.
T Consensus       141 del~e~~~~el~~l~~~--~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~  218 (258)
T PF15397_consen  141 DELNEMRQMELASLSRK--IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ  218 (258)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555565554443333  2333333322         445566777899999999999999999999999999999999


Q ss_pred             hh--ccccchhhcc
Q 016610          315 AQ--LGNKQEIVLN  326 (386)
Q Consensus       315 lq--l~~~~Ev~~~  326 (386)
                      |+  ....+|++|.
T Consensus       219 L~~~~~~~Re~iF~  232 (258)
T PF15397_consen  219 LQAQAQDPREVIFA  232 (258)
T ss_pred             HHHhhcchHHHhhH
Confidence            96  4444777774

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=81.93  E-value=20  Score=29.87  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSL-----IDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       268 a~leeLE~rVe~L-----e~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      .++..||.+++.-     ...+..|..++..|+.+...|..+|..|+.++.
T Consensus        49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556666665532     225556788888888888889999999998875

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.86  E-value=6.3  Score=39.29  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 016610          253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR----QENAALLEKLKSAQ  316 (386)
Q Consensus       253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~----sEN~~LkeqL~~lq  316 (386)
                      +++..-++.--.+....++++..+++.++.++..+..++..|+.++..|+    .++..|+.++..++
T Consensus        44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445556666666666666777777777766666666665543    34445555555443

>PRK03918 chromosome segregation protein; Provisional

Probab=81.84  E-value=16  Score=40.36  Aligned_cols=14  Identities=21%  Similarity=0.548  Sum_probs=7.8

Q ss_pred             CcccccCCCCCCCC
Q 016610          139 GLAMSIGNASAESA  152 (386)
Q Consensus       139 g~~m~~g~~~~~~~  152 (386)
                      |+++++|.+.+||+
T Consensus        24 g~~~i~G~nG~GKS   37 (880)
T PRK03918         24 GINLIIGQNGSGKS   37 (880)
T ss_pred             CcEEEEcCCCCCHH
Confidence            55666665555554

>PRK04325 hypothetical protein; Provisional

Probab=81.83  E-value=7.6  Score=31.43  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ....|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus         3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L   49 (74)
T PRK04325          3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL   49 (74)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999888

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.65  E-value=5.7  Score=30.75  Aligned_cols=31  Identities=32%  Similarity=0.442  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKL  301 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L  301 (386)
                      ..+..++..|+.++..|+.++..|++++..|
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444444444444

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.63  E-value=13  Score=34.78  Aligned_cols=43  Identities=21%  Similarity=0.450  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      ..+|+.++..|+.++..|..++..|+.+++.++..+..+++..
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~  164 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE  164 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688888888888888888888888888877777666655443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.55  E-value=9.5  Score=42.12  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          253 QSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       253 ~sNRESARRSRlRK-qa~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      ..+|..+.+.+..+ +.+..+|+.++++|+.++..|+.++..++.
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444333 344555666666666666666666655544

>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]

Probab=81.48  E-value=5.4  Score=41.16  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      |..|++++.++..-..+|..+.+|+.+++.-|..|...-..||+.|..
T Consensus       153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q  200 (405)
T KOG2010|consen  153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ  200 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888899889999999999999999999999999999998886

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.33  E-value=15  Score=38.31  Aligned_cols=6  Identities=33%  Similarity=0.274  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 016610          269 EAEELS  274 (386)
Q Consensus       269 ~leeLE  274 (386)
                      ++.+|+
T Consensus       338 ~i~el~  343 (562)
T PHA02562        338 KLLELK  343 (562)
T ss_pred             HHHHHH
Confidence            333333

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.31  E-value=10  Score=39.31  Aligned_cols=71  Identities=24%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +..+++.++.+-+|..|-.+-+|+..  |+|..=..+|+.+..+|..++..|+..++-|....+.-.++++++
T Consensus       216 ~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~  286 (365)
T KOG2391|consen  216 REKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL  286 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Confidence            34444455555556666555555544  444445555555555555555555555555555444434444443

>PRK14127 cell division protein GpsB; Provisional

Probab=81.13  E-value=3.8  Score=35.77  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKL  301 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L  301 (386)
                      +.|+++...++.|..||..|+.++..|++++..+
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~   63 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL   63 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544433333

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.12  E-value=13  Score=34.79  Aligned_cols=17  Identities=29%  Similarity=0.384  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASL  287 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~L  287 (386)
                      .+|+.+.+.|+.+...|
T Consensus       130 ~~L~~e~~~L~~~~~~l  146 (189)
T PF10211_consen  130 EELEEEKEELEKQVQEL  146 (189)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.03  E-value=20  Score=39.16  Aligned_cols=6  Identities=33%  Similarity=0.545  Sum_probs=2.8

Q ss_pred             ccCCCc
Q 016610           81 IYSTGG   86 (386)
Q Consensus        81 ~Yp~Gg   86 (386)
                      .|+||+
T Consensus        15 ~Y~P~~   20 (546)
T PF07888_consen   15 SYIPGT   20 (546)
T ss_pred             ccCCCC
Confidence            444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.96  E-value=11  Score=29.96  Aligned_cols=45  Identities=16%  Similarity=0.204  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .|+.++..|+.....+...|..|.+.+.+...+...|+.+|..|.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~   45 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR   45 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378888889998888888888888888888888888888888873

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK14160 heat shock protein GrpE; Provisional

Probab=80.95  E-value=8.6  Score=37.07  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ...+..|+.++..|+.++..|..++..|+.++.++.++...+|.+...
T Consensus        53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k  100 (211)
T PRK14160         53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK  100 (211)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567777778888888888888888888888888887777777665

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=80.93  E-value=10  Score=41.26  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      +++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...+|.
T Consensus       132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33344444443332333444444444444444444444444444444444444444443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=80.87  E-value=5.7  Score=42.47  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Q 016610          271 EELSRKVDSLIDENASLKSEIN---------------QLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~---------------~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ++|..+-+.|.+||..|+++..               +|.++.++|..|...|+..|..|
T Consensus        76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555554322               33334445555555555555555

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=80.86  E-value=5.2  Score=42.82  Aligned_cols=47  Identities=23%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +++|+.|+++++.|.+.+..|.++|+.|+.++..|+.+...+++++.
T Consensus        82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~  128 (475)
T PRK13729         82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV  128 (475)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            34455666666666666666677777777777777666655555543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.56  E-value=14  Score=42.13  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ....++-..=+--+++-+..++.|.+.+..|+-||.+|..++.....+..+|+.++..||.+|...
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~  718 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII  718 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334444555666778888899999999999999999999999999999999999999999999843

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.34  E-value=19  Score=41.72  Aligned_cols=46  Identities=26%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSE---------------NSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~e---------------e~~~L~sEN~~LkeqL~~lq  316 (386)
                      +.|+.+|+.|+..+.+|.-.++.|+.               ++.+|+.+|..||+-|-.|+
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR  388 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR  388 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555554               33457777777777666664

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=80.31  E-value=17  Score=31.62  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+...|+.+...-...|.++.++++.|.-.|.+|-.++..||
T Consensus        26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ   67 (102)
T PF10205_consen   26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ   67 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555666666666666666777766666665

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>smart00340 HALZ homeobox associated leucin zipper

Probab=80.30  E-value=3.6  Score=30.77  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          292 NQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       292 ~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +-|++.|+.|..||+.|+.+|++|+
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLr   32 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELR   32 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777775

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=80.20  E-value=20  Score=34.17  Aligned_cols=48  Identities=25%  Similarity=0.319  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      ...|-.-+..+..||..|+.++..|.+++..|+..+..|..+-..|+.
T Consensus       151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~  198 (206)
T PF14988_consen  151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ  198 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555667788899999999999999999999999999888887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-15
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-15
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	7e-15
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-14
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	1e-14
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-14
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-12
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-11
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-10
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	3e-10
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	5e-09
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	2e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	4e-04

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 16/58 (27%), Positives = 34/58 (58%)

Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303
           +K+ ++ + N+ +A R R +K+AE E L+ +   L  +N +LK   + L++  + L+ 
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
           KRE R   NRE+AR SR +K+   + L  +V  L ++N +L  E+  L +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 67.8 bits (166), Expect = 7e-15
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
           KR +  + NR +A RSR +++   + L +K + L   N  L+SE+  L     +L+Q 
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303
           KR  R++ N+ +A + R R++   + L  + D L DE ++L++EI  L +  EKL  
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 68.2 bits (166), Expect = 1e-14
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
             +LK+ RR   NR  A   R+++  + EEL ++   L  E   L SE   +    + LR
Sbjct: 33  IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92

Query: 303 QENAALLEKLKSAQ 316
            +  AL    ++  
Sbjct: 93  SKYEALQNFARTVA 106

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
           K ER++  NR +A +SR RK      L  KV +L  +N+ L S  N L E   +L+Q+
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302
              LK++RR   NR  A+  R ++  +   L  +   LI +   LK E+++L+   +  +
Sbjct: 23  VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82

Query: 303 QENAALL 309
            ++  L 
Sbjct: 83  VKSEKLA 89

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
           N  +    +RK  NR + R  R RK+   + L  +V +L + ++S   E +QL +   +L
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62

Query: 302 RQENAAL 308
            +E   L
Sbjct: 63  EEELRIL 69

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
           ++   + + R++ N  + R+SR + +    E   KV  L  EN  L+ ++ QLS     L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 302 RQ 303
           R 
Sbjct: 70  RN 71

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
            +   LKR R    N E+ARRSR RK    ++L  KV+ L+ +N  L++E+ +L +
Sbjct: 7   SDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303
            R++ N  + R+SR + +    E   KV  L  EN  L+ ++ QLS     LR 
Sbjct: 18  IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Length = 152

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 203 SPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRS 262
           +  M   L  R     + +A    + Q  +       + ++  L            ++  
Sbjct: 23  TDSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQ 82

Query: 263 RLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311
            +R+ +      ++  + L     S   E N L +    L++E++ L+ +
Sbjct: 83  EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 19/83 (22%)

Query: 240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI-------- 291
           +  E E  R+ R++      +R RL++   A +          E A  K ++        
Sbjct: 80  LTQEPESIRKWREE------QRKRLQELDAASK--VMEQEWR-EKA--KKDLEEWNQRQS 128

Query: 292 NQLSENSEKLRQENAALLEKLKS 314
            Q+ +N    R  + A  ++  +
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDA 151

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL----SENS 298
           +RELK+ + +  + E  ++  +  + +  +L RK+D    E  SL  ++N L    S  +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 299 EKLRQENAALLEKLKSAQLGNKQEIVLNED 328
           EKLR +   L    + A+    + + L E+
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 243 ERELKRERRKQSN--RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300
            R LK     Q    R  A+R   + + EA      V+     +  L+++I QL    ++
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARS----VERYKKLHIGLENKIMQLQRKIDE 939

Query: 301 LRQENAALLEKLKSAQLGNKQEI 323
             +E  +LLEK+ + ++    E 
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTET 962

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 240  IQNERELKRERRKQSNRESARRSRLRKQAEA-----EELSRKVDSLIDENASLKSEINQL 294
            +Q E EL  E  +   R +A++  L +         EE   +   L  E   ++ ++  L
Sbjct: 901  LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960

Query: 295  SENSE-------KLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSG 347
             E  E       KL+ E      K+K  +     +I++ ED+         LL    +  
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKME----DDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 348  TVDRNMEEGGHLFEKNSNSGAKLHQLLD 375
            T +   EE     +  +    K   ++ 
Sbjct: 1017 TTNLAEEE--EKAKNLTKLKNKHESMIS 1042

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 4/110 (3%)

Query: 15  PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPY 74
             +  P  Q    M     A       ++ +PP    P             PAQ  +   
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT----PAQEQLHQQ 72

Query: 75  GAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSG 124
                   +   ++  P V   ++            +          + G
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300
           Q   +L+R +R           RL +   A E +  ++S +DE  SL   + +L + +  
Sbjct: 116 QANDDLERAKRATIMSLEDFEQRLNQ---AIERNAFLESELDEKESLLVSVQRLKDEARD 172

Query: 301 LRQENAALLEKLKSAQ 316
           LRQE A    + +  +
Sbjct: 173 LRQELAVRERQQEVTR 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.52
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.41
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.38
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.33
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.32
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.16
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.11
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.89
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.87
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.78
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.49
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.58
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	97.06
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.62
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.76
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	95.76
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.61
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.0
3m48_A	33	General control protein GCN4; leucine zipper, synt	94.94
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.93
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.87
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	94.86
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	94.67
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	94.46
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.2
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	94.2
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.06
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	93.8
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	93.72
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.72
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	93.68
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	93.21
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	93.19
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	93.17
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	93.11
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	93.03
2bni_A	34	General control protein GCN4; four helix bundle, a	93.02
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.96
1uo4_A	34	General control protein GCN4; four helix bundle, c	92.88
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	92.71
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	92.69
2hy6_A	34	General control protein GCN4; protein design, para	92.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.44
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	92.33
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	92.3
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	92.15
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	91.88
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	91.85
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	91.33
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	91.18
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	91.13
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.84
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.77
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	90.72
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.69
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	90.65
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	90.06
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	89.57
2wt7_B	90	Transcription factor MAFB; transcription, transcri	89.13
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	88.78
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	88.52
1fmh_A	33	General control protein GCN4; coiled coil, leucine	88.34
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	88.34
3htk_A	60	Structural maintenance of chromosomes protein 5; S	87.96
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	87.93
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	87.9
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	87.89
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	87.8
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	87.73
2wvr_A	209	Geminin; DNA replication license, DNA replication	87.32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.29
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	87.11
3u06_A	412	Protein claret segregational; motor domain, stalk	86.9
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	86.59
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	86.55
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	86.17
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.08
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.95
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	85.78
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	85.7
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	85.63
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.54
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.46
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	85.1
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	85.03
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	84.66
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	84.52
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.41
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.23
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	84.2
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	83.86
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	83.85
2j5u_A	255	MREC protein; bacterial cell shape determining pro	83.69
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.66
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	83.65
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	83.57
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.51
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	83.27
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.2
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	83.12
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	83.05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.99
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.7
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	82.67
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.5
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	82.37
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	82.34
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	81.96
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	81.92
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	81.55
3htk_A	60	Structural maintenance of chromosomes protein 5; S	81.39
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	81.23
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	81.19
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	81.05
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.71
2wuj_A	57	Septum site-determining protein diviva; bacterial	80.39
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	80.18
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	80.09

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.52  E-value=1.4e-14  Score=109.13  Aligned_cols=52  Identities=37%  Similarity=0.470  Sum_probs=49.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      ||++|+++||+||++||.||++|+++||.+|..|+.||..|..++..|+++|
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999987765

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.41  E-value=9.8e-13  Score=101.03  Aligned_cols=56  Identities=34%  Similarity=0.528  Sum_probs=51.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk   57 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999988877665554

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.38  E-value=1.5e-12  Score=99.05  Aligned_cols=56  Identities=30%  Similarity=0.463  Sum_probs=50.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999988866554443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.33  E-value=2.6e-12  Score=98.18  Aligned_cols=55  Identities=38%  Similarity=0.485  Sum_probs=49.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL  301 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L  301 (386)
                      |++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|++++..|
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999999999999999999999999998876654443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.32  E-value=2.3e-12  Score=99.47  Aligned_cols=51  Identities=33%  Similarity=0.492  Sum_probs=44.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE  299 (386)
Q Consensus       249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~  299 (386)
                      ++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus        11 ~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445999999999999999999999999999999999999999887653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.16  E-value=6.6e-11  Score=91.08  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +|+.+++++||.||+|||.||++++++|+.+++.|+.+|..|..+|..|+.       |+..|+.-|.
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~-------E~~~Lk~ll~   61 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK-------EIQYLKDLIE   61 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence            368889999999999999999999999999999999999999998888755       5555555543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.11  E-value=1.9e-10  Score=90.72  Aligned_cols=61  Identities=30%  Similarity=0.353  Sum_probs=56.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL  309 (386)
Q Consensus       249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk  309 (386)
                      .||+..||+|+|.+|.||++|+.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999999999999999999999999999999999988775

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.89  E-value=5.9e-09  Score=85.34  Aligned_cols=62  Identities=29%  Similarity=0.344  Sum_probs=51.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +...|+.+|.+||+|||.++++...+++.+|+.|+.||..|+.+|..|+.       |+..|+..|..+
T Consensus        15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-------E~~~Lr~ll~~~   76 (87)
T 1hjb_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------ELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence            35566778999999999999999999999999999999999999988766       455555555543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.87  E-value=7.2e-09  Score=83.24  Aligned_cols=55  Identities=31%  Similarity=0.385  Sum_probs=47.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  302 (386)
Q Consensus       248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~  302 (386)
                      ...|+.+|.+||+|||.++++...+++.+|..|+.||..|+.+|..|+.++..|+
T Consensus        16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555778999999999999999999999999999999999999998766555443

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.78  E-value=1.5e-10  Score=97.93  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=46.6

Q ss_pred             ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      .++..++|.+||+++||.+|++||.||.+++++||.++..|..+...|..|+..|+.++
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~   88 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLEL   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999777666665555555544444433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.49  E-value=7e-07  Score=73.57  Aligned_cols=69  Identities=26%  Similarity=0.348  Sum_probs=53.4

Q ss_pred             ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -++-..+|..||.++||.+|+-||.||.++..+||.++..|..+...|+.++..+..       |...+++++..|
T Consensus        20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L   88 (90)
T 2wt7_B           20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence            345678999999999999999999999999999988888777776666666666554       555556655544

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.58  E-value=0.00013  Score=52.48  Aligned_cols=40  Identities=33%  Similarity=0.446  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      |+|+.+||.++..|+..|.+|..++..|       ..||..||+.|+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl~   41 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHILK   41 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHhc
Confidence            5899999999999999999999888886       568999998876

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=97.06  E-value=0.0026  Score=47.56  Aligned_cols=47  Identities=32%  Similarity=0.435  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+.|-++|+.|+.||..|++|++.=..++.+|+.|-.-+|+-++.+|
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999876

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.62  E-value=0.0009  Score=55.21  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016610          244 RELKRERRKQSNRESARRSRLRKQAEAEELSR  275 (386)
Q Consensus       244 rElKR~RRk~sNRESARRSRlRKqa~leeLE~  275 (386)
                      ..+|..||+.+||.+|++||.||.+.+++|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            45667899999999999999999999988764

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.76  E-value=0.036  Score=42.68  Aligned_cols=41  Identities=32%  Similarity=0.416  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      +..-|.+|.+|.+-|..|.+|+..|+.++..|.+||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            34557789999999999999999999999999999999984

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=95.76  E-value=0.037  Score=46.44  Aligned_cols=53  Identities=26%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~-------el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .-=-+++-+||.+++.|+.||..|+.       +|..|..++++|+.||..|+.+-+.-+
T Consensus        33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33345667899999999999988887       788888999999999999988877643

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.61  E-value=0.052  Score=43.95  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+.-|+.+++.|+.+|..|..++..++.....|..||..|+++....+
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq   68 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344566677777777777777777777777778888888888877654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.39  E-value=0.068  Score=46.60  Aligned_cols=53  Identities=21%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..|+
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.00  E-value=0.25  Score=49.80  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ++.+.|++|...|+++++..+++..+|..|+..++++|+.+
T Consensus       537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444443

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=94.94  E-value=0.025  Score=38.76  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      +..||.+|+.|-.+|..|..|+.+|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999999999999876

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.93  E-value=0.091  Score=37.98  Aligned_cols=44  Identities=30%  Similarity=0.319  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +..|+.+|..|+.||..|+++.---+.-+.-|+.|...||.+|.
T Consensus         5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie   48 (49)
T 3he5_A            5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE   48 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence            56799999999999999999888778888889999999988874

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.87  E-value=0.069  Score=44.73  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 016610          295 SENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       295 ~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      ++.+.+|+.|+..||.+|..++.
T Consensus        74 ~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           74 REDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35666677777788877776654

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=94.86  E-value=0.13  Score=39.17  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK  288 (386)
Q Consensus       251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr  288 (386)
                      .+-+||.++|+||.|=+..++....-...-.+||..|+
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr   42 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR   42 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            34459999999999988776665544444444444433

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=94.67  E-value=0.044  Score=37.72  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      ++..||.+|+.|-.+|..|..++.+|+.-
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l   30 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            57889999999999999999999998763

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=94.46  E-value=0.071  Score=37.12  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSE  299 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~  299 (386)
                      ++..||.+|+.|-.+|..|..++.+|++-+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999877543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.20  E-value=0.61  Score=41.65  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          244 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       244 rElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+.+..++..+.+.+-++.-....+++.+-..-++.|..|...|.-++..+.+++.+|+.||..|-+++..-
T Consensus        65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r  136 (152)
T 3a7p_A           65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK  136 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555556667777788889999999999999999999999999999999888753

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=94.20  E-value=0.061  Score=37.44  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSE  299 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~  299 (386)
                      ++..||.+|+.|..+|..|..++.+|++.+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~   32 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENA   32 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999877543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.06  E-value=0.32  Score=42.33  Aligned_cols=50  Identities=10%  Similarity=0.152  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+.+++++.++..|+.++..++.++..+.+++.+|+.++..|..++..|+
T Consensus        81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666654

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=93.80  E-value=0.24  Score=36.59  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ++++..|+.-|..|..++..|+..|.+++.|+..|+.-|++
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999988875

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=93.72  E-value=0.091  Score=36.14  Aligned_cols=29  Identities=7%  Similarity=0.243  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      ++..||.+|+.|-.+|..|..|+.+|+.-
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l   30 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            57889999999999999999999998763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.72  E-value=0.32  Score=39.36  Aligned_cols=39  Identities=36%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA  307 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~  307 (386)
                      -++.|+.||..+-..+.-|+-++..|+++...|..||..
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666655555555555555555555555555555

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=93.68  E-value=0.17  Score=40.34  Aligned_cols=50  Identities=16%  Similarity=0.114  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      +++++||.++..++.-...|...|.+...++..|+.+...|.++|++++.
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46889999999999999999999999999999999999999999988763

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=93.21  E-value=0.51  Score=35.28  Aligned_cols=38  Identities=34%  Similarity=0.253  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      ..+..|+.+...|..++..|..++..|+.|+..|+..|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34666677777777777777777777777777776655

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=93.19  E-value=0.21  Score=37.88  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      ++++..|++-|-.|..+++.|+.+|.+.+.|+..|..-|++
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq   50 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ   50 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999999988875

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=93.17  E-value=0.15  Score=40.96  Aligned_cols=47  Identities=28%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +++++..+++.|+.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus         7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l   53 (79)
T 3cvf_A            7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA   53 (79)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888888888888888888888888877776

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=93.11  E-value=0.13  Score=35.16  Aligned_cols=28  Identities=4%  Similarity=0.200  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      +..||.+|+.|-.+|..|..|+.+|+.-
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l   29 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5789999999999999999999998763

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=93.03  E-value=0.066  Score=51.18  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..+.+|+.+++.|...|..|..++..+++       |...|+++|+.|+
T Consensus        54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~-------El~~LkeElerL~   95 (251)
T 3m9b_A           54 RDIHQLEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRLG   95 (251)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Confidence            34555666666666666666665555555       5555555555553

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=93.02  E-value=0.11  Score=35.84  Aligned_cols=29  Identities=7%  Similarity=0.368  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      +++..||.+|+.|-.+|..|..|+.+|++
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            35678999999999999999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.96  E-value=0.55  Score=47.27  Aligned_cols=52  Identities=21%  Similarity=0.234  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+-.+.+..++++.+.++.++..++++++.++++++.++.|...|+.++++.
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~  556 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK  556 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence            4445556677777888888888888888888888887777877777777664

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=92.88  E-value=0.12  Score=35.68  Aligned_cols=28  Identities=7%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      ++..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999999876

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=92.71  E-value=0.52  Score=40.57  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +.+|+.|+.|+..|..+|..+..++++|+.+|..|..+|..
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~  110 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence            33466666677777777777777777777777777766654

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=92.69  E-value=0.33  Score=36.90  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      +++|+.+...|+.+...|..|+..|++
T Consensus        32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A           32 CKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=92.58  E-value=0.16  Score=34.99  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      ++..||.+|+.|-.+|..|..++.+|++-
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46789999999999999999999998763

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.44  E-value=0.73  Score=51.55  Aligned_cols=16  Identities=19%  Similarity=0.327  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHh
Q 016610          300 KLRQENAALLEKLKSA  315 (386)
Q Consensus       300 ~L~sEN~~LkeqL~~l  315 (386)
                      .|+.||..|++++.++
T Consensus      1027 ~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1027 ELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445555555555544

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=92.33  E-value=0.52  Score=34.97  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA  307 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~  307 (386)
                      +.+|..++..|.+.|..|...+...++++..|..|...
T Consensus        11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~   48 (51)
T 3m91_A           11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666655555544444433

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=92.30  E-value=0.2  Score=34.31  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      +..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            578999999999999999999998876

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=92.15  E-value=0.55  Score=34.87  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +.++..|+.++..|..++.+|.+-+...+.|...|+++|..+
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667778888888888888888888888888888888888765

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=91.88  E-value=0.61  Score=36.90  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .++..+++.++.+|..|..+|..|++.++.-+.+-..++.+|+.+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~   47 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL   47 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777888888888888888888888877777777777777765

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=91.85  E-value=1.5  Score=33.06  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      +..|+.+...|..+...|..++..|..|...|+..|
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555544

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=91.33  E-value=0.016  Score=47.73  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Q 016610          244 RELKRERRKQSNRESARRSRLRKQA  268 (386)
Q Consensus       244 rElKR~RRk~sNRESARRSRlRKqa  268 (386)
                      ..++..||+.+||.+|++||.||.+
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3467789999999999999999854

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=91.18  E-value=0.36  Score=44.44  Aligned_cols=83  Identities=16%  Similarity=0.238  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhhcccccCCCCcchHHHhhhccCCC
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLNEDKRVTPVSTENLLSRVNNSG  347 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq--l~~~~Ev~~~~~~~~~p~~~e~lls~vd~~~  347 (386)
                      ++.-..-|..|..||..|..++....+++..|+.+.+.|++++...+  +....|-+.         -+++|++.+...-
T Consensus        15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~---------i~~DL~e~LTGl~   85 (190)
T 4emc_A           15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE---------VIKDLYEYLCNVR   85 (190)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh---------HHHHHHHHccCcE
Confidence            33334446666777777777777766666666666666666665442  222223222         2777877775554


Q ss_pred             CCcCcccccccccc
Q 016610          348 TVDRNMEEGGHLFE  361 (386)
Q Consensus       348 ~~~~~~~~~~~~~~  361 (386)
                      -.+.-..+++.+|.
T Consensus        86 V~~~~ed~~~~~FD   99 (190)
T 4emc_A           86 VHKSYEDDSGLWFD   99 (190)
T ss_dssp             CCCCCCCSSCEEEE
T ss_pred             EEEEEEcCCCeEEE
Confidence            44433334444443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=91.13  E-value=0.63  Score=34.97  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  311 (386)
Q Consensus       276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq  311 (386)
                      .+..|+.+...|..+...|..++..|+.|+..|+..
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~   58 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK   58 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444443

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.84  E-value=0.58  Score=37.68  Aligned_cols=39  Identities=33%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..--.||..|..+|..+.+++..|+.||..|++-+...+
T Consensus        30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344468899999999999999999999999988777654

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.77  E-value=0.44  Score=35.43  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ..|+.|+.||..|+.++..|       ..++..|+.+|.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L-------~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAI-------VEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence            34555555555555555554       445555555554

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=90.72  E-value=0.36  Score=33.67  Aligned_cols=30  Identities=37%  Similarity=0.550  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          281 IDENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       281 e~EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      -.||..|..+|..-.+++..|+.||..|++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            368999999999999999999999998864

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.69  E-value=0.36  Score=35.87  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 016610          272 ELSRKVDSLIDENASLKSEINQL  294 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L  294 (386)
                      .|..+++.|+.++..|..++..|
T Consensus        23 aLk~E~~eLk~k~~~L~~~~~el   45 (53)
T 2yy0_A           23 LLRLELAEMKEKYEAIVEENKKL   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=90.65  E-value=0.92  Score=36.86  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..--.||..|..+|..|.+++..|+.+|..|++-....|
T Consensus        42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q   80 (83)
T 1uii_A           42 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344457888888888888888888888888887766544

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=90.06  E-value=1.2  Score=37.55  Aligned_cols=47  Identities=11%  Similarity=0.165  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +++-|..+++.++.....|+.++....++++.+...+..|+.++..+
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l   77 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV   77 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555554

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=89.57  E-value=1.2  Score=34.84  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          284 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ...|..++..|..++..|+.+|..|+++|..|+
T Consensus        49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345666677777777778888888888887653

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=89.13  E-value=0.92  Score=37.25  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          285 ASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ..|..++..|..+.+.|..||..+..++..+
T Consensus        51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~   81 (90)
T 2wt7_B           51 HHLENEKTQLIQQVEQLKQEVSRLARERDAY   81 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555666777777776655

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=88.78  E-value=2.3  Score=31.60  Aligned_cols=47  Identities=11%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +.+++|..+|..|..+...|..++..|+..+.....|-..-.++|.+
T Consensus         4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN   50 (52)
T 1jcd_A            4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN   50 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34677777777777777777777777777766666666666555543

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=88.52  E-value=0.71  Score=37.03  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 016610          273 LSRKVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~-------~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      +-.+|+.|-.||.+|.+.-.       .|..++++|..|+..|+.+|..+
T Consensus         7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~   56 (77)
T 2w83_C            7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV   56 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44455555555555554333       23345555555555555555554

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=88.34  E-value=0.57  Score=31.44  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      +..|+.+|.+.+.||-.|.+++.+|..+|
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            55678888888888888888887776554

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=88.34  E-value=1.4  Score=35.74  Aligned_cols=38  Identities=32%  Similarity=0.394  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ..--.||..|..+|..+.+++..|+.||..|++-....
T Consensus        34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~   71 (83)
T 1wlq_A           34 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445788888888888888888888888887765543

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=87.96  E-value=3.4  Score=30.25  Aligned_cols=48  Identities=25%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      .+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555566555555555555555555554

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=87.93  E-value=0.77  Score=31.63  Aligned_cols=28  Identities=7%  Similarity=0.239  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      ++..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678999999999999999999888865

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=87.90  E-value=2  Score=34.17  Aligned_cols=49  Identities=18%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  317 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql  317 (386)
                      ++.+-+.++..|+....--.+..++|..++-.|--||..|.++|..++.
T Consensus        26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            3444445555555555555556778888888899999999999988753

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=87.89  E-value=2.3  Score=33.28  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      +|+.....|..||..|+.+|..|..++
T Consensus        40 ~le~~~~~l~~en~~Lr~~i~~L~~El   66 (70)
T 1gd2_E           40 TLKELHSSTTLENDQLRQKVRQLEEEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=87.80  E-value=6.8  Score=33.40  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ...-+.++.+|+.+|..|+.+...-+..       ...+..||..|+.++..++
T Consensus        35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~   81 (120)
T 3i00_A           35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELR   81 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666665555544       4445566666777666653

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=87.73  E-value=2.2  Score=34.19  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          284 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ...|..+...|..+...|+.+|..|+.+|..|+
T Consensus        54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~   86 (88)
T 1nkp_A           54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455777777777777888889999999998875

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=87.32  E-value=1.6  Score=40.77  Aligned_cols=38  Identities=32%  Similarity=0.434  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .--.||..|..+|..|.+++..|+.||..|++-+..+|
T Consensus       112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q  149 (209)
T 2wvr_A          112 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ  149 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777777777777777777777777666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.29  E-value=5.8  Score=39.15  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          280 LIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ++++....+.+++.|+++.++++.++..|..+|.
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (487)
T 3oja_A          433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALA  466 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence            3333333333444444433333333333333333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=87.11  E-value=6.7  Score=31.72  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610          255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  319 (386)
Q Consensus       255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~  319 (386)
                      |=.||-.+-.|-|+   -+..++...+..|..+.+++.....++..|..|...|+.++.+|+...
T Consensus        14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~   75 (81)
T 1wt6_A           14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEG   75 (81)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            44555555544443   344455777788999999999999999999999999999999987443

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=86.90  E-value=1.8  Score=43.51  Aligned_cols=50  Identities=16%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+++++|.+++++|++++..+..++..+.+++.+.+.+.+.|-.+|.+++
T Consensus         9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~   58 (412)
T 3u06_A            9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR   58 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45778888888888888888888888888888888888888888888873

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=86.59  E-value=2  Score=42.86  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+++++.|+++++.|+.++..|..++..|.+++.+.+.+-+.|-.+|.++
T Consensus         8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el   57 (403)
T 4etp_A            8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL   57 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45677788888888888888888888888888877777777787777776

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=86.55  E-value=0.68  Score=44.28  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  300 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~  300 (386)
                      .+.+++.|+.+.+.|..+...|++||..|++++++
T Consensus        59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler   93 (251)
T 3m9b_A           59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR   93 (251)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777777777776654443

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=86.17  E-value=5.9  Score=32.21  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -||+|+.-+-=++.+.+.|..--+.|       ..+|..-++++..|+.+...++.+|.+|
T Consensus        24 KrEaA~Ee~YfrqkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l   77 (84)
T 1gmj_A           24 KREQAEEERYFRARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36666665533333333333322222       3334444444444455555555555554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.08  E-value=9.2  Score=34.55  Aligned_cols=70  Identities=21%  Similarity=0.272  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      =|+.+.-...+++ -|+=---|+||++  .||...+..++..+..|...+..|......|+.|+..|..+|..
T Consensus        11 LekQL~E~n~kLk-~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q   80 (168)
T 3o0z_A           11 LQKQLEEANDLLR-TESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA   80 (168)
T ss_dssp             THHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445544 3444455566665  55666666666666666666666666666666666555555544

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.95  E-value=8.9  Score=32.57  Aligned_cols=62  Identities=21%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 016610          255 NRESARRSRLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENS-------EKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       255 NRESARRSRlRKqa~leeLE~rVe~Le~---EN~~Lr~el~~L~ee~-------~~L~sEN~~LkeqL~~lq  316 (386)
                      |=.+|-+.=..|+..|++|.+++..++.   .+..|+.++...+..+       +++..|...|.++|..|+
T Consensus        32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq  103 (110)
T 2v4h_A           32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence            3456666666788888888877777776   5555666666555443       456667777777777665

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=85.78  E-value=0.93  Score=35.52  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSEN  297 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee  297 (386)
                      .|+..|+.++..|+.+...|+.++..|+.+
T Consensus        47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B           47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444433

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=85.70  E-value=1.3  Score=35.05  Aligned_cols=20  Identities=20%  Similarity=0.131  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLK  288 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr  288 (386)
                      .+++|+.++.+++.++..|+
T Consensus        41 ~I~eLEk~L~ekd~eI~~Lq   60 (72)
T 3nmd_A           41 LIDELELELDQKDELIQMLQ   60 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444443333333333

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=85.63  E-value=4.9  Score=32.60  Aligned_cols=61  Identities=25%  Similarity=0.388  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          243 ERELKRERRKQSNRESARRSRLR---KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ  303 (386)
Q Consensus       243 ErElKR~RRk~sNRESARRSRlR---Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s  303 (386)
                      +--.||.|=-++=|.|-...|.|   -+.++++|+.+-..|+.++..|..|+..|+.-+..+-.
T Consensus        15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~   78 (87)
T 1hjb_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE   78 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence            33444555555554444444433   45668888899999999999999999988876665443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.54  E-value=4.4  Score=31.74  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ..++.++.++...+..+..+..+|..|+.++..|+.+...+.++|...
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a   67 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.46  E-value=3.3  Score=36.94  Aligned_cols=46  Identities=17%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ..|+.++..|+.+...-.+-+..|+.++..|..|+..|.+++..++
T Consensus        78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq  123 (152)
T 3a7p_A           78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK  123 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444433333334444455555555555555555555543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=85.10  E-value=4.8  Score=33.78  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      -..+.+|+.+|+.|+.||..|+.+....++
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            456777888888888888887777666544

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=85.03  E-value=0.51  Score=37.77  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610          283 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  319 (386)
Q Consensus       283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~  319 (386)
                      |...|+.+|..|.+++.+|+.||..||.-..--++.+
T Consensus        16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q   52 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK   52 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4456777777777788888889999987665444444

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=84.66  E-value=4.3  Score=32.16  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  300 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~  300 (386)
                      |-+++...+.+++.|+.+..++..+|..|+.+|.+
T Consensus        31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555444444444444444444433

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=84.52  E-value=3.5  Score=32.44  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=40.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          250 RRKQSNRESARRSRLRKQAEAEELSRKVDSL---IDENASLKS---EINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       250 RRk~sNRESARRSRlRKqa~leeLE~rVe~L---e~EN~~Lr~---el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .|+.....+-|+-|.+=...+.+|..-|-..   ...-.-|..   =|..|+.++..|..|+..|+.++++.+
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445555666666666677777777655432   011112222   244677777888888888888888654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.41  E-value=15  Score=29.91  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENS  298 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~  298 (386)
                      .+++.+...++.+...|..++..|..++
T Consensus        33 k~~e~~~~~~E~Ei~sL~kk~~~lE~el   60 (101)
T 3u1c_A           33 KAAEERSKQLEDDIVQLEKQLRVTEDSR   60 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.23  E-value=16  Score=29.87  Aligned_cols=50  Identities=18%  Similarity=0.245  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -..+.+.++.++..++.++..+..+|..|+.++..|+.+...+..+|...
T Consensus        21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A           21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555543

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=84.20  E-value=4.1  Score=34.27  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      +..++++++.+.+|.+++.....++..++..+..|..+...|+.+|..
T Consensus        36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999986

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=83.86  E-value=1.9  Score=34.09  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          287 LKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       287 Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      |..+...|.++.+.|+.||..|+.+|.
T Consensus        52 L~~~~~~l~~e~~~L~~e~~~L~~~L~   78 (80)
T 1nlw_A           52 LEDSDRKAVHQIDQLQREQRHLKRQLE   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444445555555655554

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=83.85  E-value=1.8  Score=29.83  Aligned_cols=26  Identities=15%  Similarity=0.372  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          289 SEINQLSENSEKLRQENAALLEKLKS  314 (386)
Q Consensus       289 ~el~~L~ee~~~L~sEN~~LkeqL~~  314 (386)
                      .++...++.++.|+.+|..|.+++..
T Consensus         7 rKn~a~qqDIddlkrQN~~Le~Qir~   32 (34)
T 1a93_B            7 RKNDTHQQDIDDLKRQNALLEQQVRA   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            33344444444445555555555543

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=83.69  E-value=0.5  Score=44.44  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 016610          280 LIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       280 Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL~~l  315 (386)
                      |.+||.+|++|+..|++   ++..|+.||..||+.|...
T Consensus        24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~   62 (255)
T 2j5u_A           24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT   62 (255)
T ss_dssp             --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33444444444444432   3456788999999887743

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.66  E-value=4.9  Score=32.66  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016610          275 RKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       275 ~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      .+|..|+++|..|..++..++.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4555666666666555555543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.65  E-value=1.7  Score=43.84  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      .+|..++..|+.+...|..+.+.|+.+...|..|...|+++++.+|
T Consensus        45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~   90 (428)
T 4b4t_K           45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ   90 (428)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555566666666666666666666666666667777777777765

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=83.57  E-value=5.1  Score=33.95  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENA  306 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~  306 (386)
                      |+.++..|+..|..|...|..|.+.++.|+...+
T Consensus        40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R   73 (111)
T 2v66_B           40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR   73 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            3333444444444444444444333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.51  E-value=14  Score=28.81  Aligned_cols=61  Identities=20%  Similarity=0.260  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .-+.|...-..-...+.+.+.+...++.+...|..++..|..++..+.........+|...
T Consensus        14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A           14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666566667777888888888888888888888888888888888877777777764

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=83.27  E-value=15  Score=33.10  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=23.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN  292 (386)
Q Consensus       252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~  292 (386)
                      ++.-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+.
T Consensus        74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445666666666666666666666655555544333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.20  E-value=4.8  Score=33.48  Aligned_cols=18  Identities=22%  Similarity=0.259  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 016610          297 NSEKLRQENAALLEKLKS  314 (386)
Q Consensus       297 e~~~L~sEN~~LkeqL~~  314 (386)
                      +...++..|..|+++|.+
T Consensus        77 e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           77 EKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            444455555555555554

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=83.12  E-value=5  Score=29.21  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      +||++|+.|+.-...|..++++|-.++..   -...|+++|..++
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE   43 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            57888888888877777777777555443   3456788877764

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=83.05  E-value=2.4  Score=30.45  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          267 QAEAEELSRKVDSLIDENASLKSEI  291 (386)
Q Consensus       267 qa~leeLE~rVe~Le~EN~~Lr~el  291 (386)
                      +....+||++|..|+.||..||+-+
T Consensus        16 e~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           16 ENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            3456788888888888888888654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.99  E-value=11  Score=34.97  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  310 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke  310 (386)
                      +++.|+.+++.++.++..|..++..+.++++.+..+...+.+
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~  132 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK  132 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555544444444444443333333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.70  E-value=18  Score=29.42  Aligned_cols=22  Identities=9%  Similarity=0.211  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 016610          291 INQLSENSEKLRQENAALLEKL  312 (386)
Q Consensus       291 l~~L~ee~~~L~sEN~~LkeqL  312 (386)
                      .+.+..+...+..|..+|..++
T Consensus        62 yn~~~~ql~e~~dE~~Sl~~q~   83 (96)
T 3q8t_A           62 YSEFKRQQLELDDELKSVENQM   83 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=82.67  E-value=3.8  Score=32.55  Aligned_cols=50  Identities=24%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 016610          266 KQAEAEELSRKVDSLIDENASLKSEINQL------SENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L------~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      -|.+++.|+.+++.|+.+...|..++..-      -.++..|..+...|.++|..+
T Consensus        20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~   75 (89)
T 2lw1_A           20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA   75 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999888888887531      234555555666666665554

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.50  E-value=6  Score=32.30  Aligned_cols=32  Identities=13%  Similarity=0.357  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQ  303 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s  303 (386)
                      .|..++..|+.+...|..+|..++.+...|..
T Consensus        22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~   53 (96)
T 3q8t_A           22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQ   53 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            33344444444444444444444444444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=82.37  E-value=12  Score=31.58  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      |+.++..|..........+..|.....+|..++..|+.+|..+
T Consensus        81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333344444444444444444444443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=82.34  E-value=4.5  Score=32.04  Aligned_cols=45  Identities=20%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      ++|+.|+..|+...+.+...|..|.+.+.+...+...|+.+|..|
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L   54 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL   54 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999887

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=81.96  E-value=6.5  Score=31.51  Aligned_cols=43  Identities=33%  Similarity=0.466  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      ++|-.||++|..|+..|+.|+..+++-..+++..+..|.++|+
T Consensus        33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk   75 (77)
T 2w83_C           33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777777777777777777777766666666666654

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=81.92  E-value=15  Score=27.99  Aligned_cols=55  Identities=20%  Similarity=0.133  Sum_probs=34.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL  309 (386)
Q Consensus       252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk  309 (386)
                      ..+||+-|-.-=.   ..+++|...+..-..+....+.+|..|+..+..|+.|...||
T Consensus        22 a~knr~EaE~~y~---~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           22 AAKNLQEAEEWYK---SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445554433222   235667777776666666777777777777777777777665

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=81.55  E-value=2.9  Score=28.03  Aligned_cols=23  Identities=43%  Similarity=0.437  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 016610          287 LKSEINQLSENSEKLRQENAALL  309 (386)
Q Consensus       287 Lr~el~~L~ee~~~L~sEN~~Lk  309 (386)
                      |++|+..|+.++..|.-|...|+
T Consensus         7 lkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            7 LKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444443

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=81.39  E-value=9.4  Score=27.79  Aligned_cols=47  Identities=11%  Similarity=0.189  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610          269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  315 (386)
Q Consensus       269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l  315 (386)
                      .+..|+..++.++.+...++.++..++.++..+..+....+..|..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~   52 (60)
T 3htk_A            6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK   52 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666777766666677777777777777777777777766665

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=81.23  E-value=7.6  Score=31.56  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQE  304 (386)
Q Consensus       272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE  304 (386)
                      .|+.++..++.++..+..++..|+.++..|+.+
T Consensus        27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e   59 (101)
T 3u59_A           27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE   59 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=81.19  E-value=15  Score=29.36  Aligned_cols=44  Identities=11%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +-+|..+++.|+.|+..|+-.++.+.-++..|......+-..|.
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD   65 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777777777666666666554

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=81.05  E-value=7.1  Score=31.57  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE  304 (386)
Q Consensus       255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE  304 (386)
                      .+++-++-=-+=+...-.++.++.+.+..|..|..++..|++++..|+.+
T Consensus        25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~   74 (81)
T 1wt6_A           25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444443344455566677788888888888888888888877776544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.71  E-value=3.5  Score=43.21  Aligned_cols=18  Identities=11%  Similarity=0.076  Sum_probs=11.2

Q ss_pred             ccchHHHHHHHHHHHhHH
Q 016610          240 IQNERELKRERRKQSNRE  257 (386)
Q Consensus       240 lqdErElKR~RRk~sNRE  257 (386)
                      ++.|++++....+++|..
T Consensus        56 dkqErDltkrINELKnqL   73 (562)
T 3ghg_A           56 DEVNQDFTNRINKLKNSL   73 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCcHHHHHHHHHHHH
Confidence            345777777666666643

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=80.39  E-value=1.6  Score=32.51  Aligned_cols=29  Identities=14%  Similarity=0.375  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSE  296 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e  296 (386)
                      +.|+++...++.|..||..|+.++..|++
T Consensus        27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           27 EFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555556666666666666655555544

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=80.18  E-value=9  Score=32.31  Aligned_cols=46  Identities=15%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  313 (386)
Q Consensus       268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~  313 (386)
                      +.+-..|.+++.|+.++.+|+.++......+..|-.+|..|..++.
T Consensus        11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~   56 (125)
T 1joc_A           11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT   56 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            4445556667777777777777777766666666667777665444

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=80.09  E-value=14  Score=29.57  Aligned_cols=46  Identities=15%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  306 (386)
Q Consensus       261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~  306 (386)
                      ++=..=+..+++|+.+|..|+-.+..+..++..|+++-..+..+..
T Consensus        20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD   65 (83)
T 2xdj_A           20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556666666666666666666666666666666555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	94.5
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.69
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	81.59

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.50  E-value=0.008  Score=46.00  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016610          245 ELKRERRKQSNRESARRSRLRKQAEAEEL  273 (386)
Q Consensus       245 ElKR~RRk~sNRESARRSRlRKqa~leeL  273 (386)
                      -.+-.||+=+||.+|++||+||-...++|
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            34567899999999999999998876653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.69  E-value=1.2  Score=33.33  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610          284 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ  316 (386)
Q Consensus       284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq  316 (386)
                      ...|..++..|..+...|..+|..|+.+|..|+
T Consensus        54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344666666677777777778888888877664

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.59  E-value=4  Score=30.23  Aligned_cols=28  Identities=29%  Similarity=0.336  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610          279 SLIDENASLKSEINQLSENSEKLRQENA  306 (386)
Q Consensus       279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~  306 (386)
                      .|+.++..|..++..|+.+...|..+..
T Consensus        56 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~   83 (88)
T d1nkpa_          56 SVQAEEQKLISEEDLLRKRREQLKHKLE   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333