Citrus Sinensis ID: 016630

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MATSATGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEEEccccEEEEEccEEEEEccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccEEEEEEEEEEEEEccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
matsatgmVYIRVIEDVISKIWEMKMIQAGViidrtsapkqpapggpitpvhdlnvpyegteeyetptaeilfpptplqtpiqtplpgstplpgstplpgstplpgtadnstyniptgssdyptpasdsggnteaksgngrpssymppppspwmnprpplsvdvnvayvegrdeadrgtshqpltqdfftmsagkrkredfpaqyhnggynipqqdgagdAMSEIFELEvsefpgrqdsvtTANREIFANLASssvkipqldgpipdpyddvlstpniynyqgvvnedynivntpapndiqastpavvtqndaaeddddeplnendddelddvdqgeelnTQHLVLAQFDKVTRTKSRWKCALKDGimhinnkdilfnkatgefdf
Flexible Loop (DISEMBL)
matsatgmvyiRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGgnteaksgngrpSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDeadrgtshqpltqdffTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDaaeddddeplneNDDDELDDVDQGEELNTQHLvlaqfdkvtrtkSRWKCAlkdgimhinnkdilfnkatgefdf
Low Complexity Region (SEG)
MATSATGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVpyegteeyetptaeilfpptplqtpiqtplpgstplpgstplpgstplpgtADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRpssymppppspwmnprpplsVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQndaaeddddeplnendddelddvdqgeelNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Disordered region (IsUnstruct)
******GMVYIRVIEDVISKIWEMKMIQAGVIIDR******************************************************************************************************************************************************************************************************************EIFANLA***VKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNT**********************************************TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK*******
Disordered Region (DISOPRED)
****ATGMVYIRVIEDVISKIWEMKMIQAGVIIDR*************TPVHDLNVPYE***************************************************************************************************************************************************************************************************************************************************************************************LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Disordered Region (DISEMBL)
MATSATGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY**************************PPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Disordered Region (DISPRO)
*****TGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAP*****GGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGR**********PLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYN**********************************************EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATSATGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
P52655	376	Transcription initiation	no	no	0.186	0.191	0.421	1e-10
Q5RCU0	376	Transcription initiation	yes	no	0.186	0.191	0.421	1e-10
O08949	377	Transcription initiation	yes	no	0.186	0.190	0.421	1e-10
Q99PM3	378	Transcription initiation	no	no	0.186	0.190	0.421	2e-10
Q54G80	310	Transcription initiation	yes	no	0.111	0.138	0.604	5e-10
Q9USU9	369	Transcription initiation	yes	no	0.334	0.349	0.315	6e-10
P52654	366	Transcription initiation	no	no	0.165	0.174	0.409	2e-09
P32773	286	Transcription initiation	yes	no	0.165	0.223	0.477	4e-09
Q8R4I4	468	TFIIA-alpha and beta-like	no	no	0.173	0.143	0.376	3e-08
Q9UNN4	478	TFIIA-alpha and beta-like	no	no	0.173	0.140	0.347	6e-07

>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)

Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
            AED   ++EPLN  DD  + D +  E  +T+++V+ Q+DK+ R+K++WK  LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360

Query: 371 NNKDILFNKATGEFDF 386
           N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity.
Homo sapiens (taxid: 9606)

>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii GN=GTF2A1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)

Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
            AED   ++EPLN  DD  + D +  E  +T+++V+ Q+DK+ R+K++WK  LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360

Query: 371 NNKDILFNKATGEFDF 386
           N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity.

Pongo abelii (taxid: 9601)

>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus GN=Gtf2a1 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)

Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
            AED   ++EPLN  DD  + D +  E  +T+++V+ Q+DK+ R+K++WK  LKDGIM++
Sbjct: 304 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 361

Query: 371 NNKDILFNKATGEFDF 386
           N +D +F+KA G+ ++
Sbjct: 362 NGRDYIFSKAIGDAEW 377

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity.

Rattus norvegicus (taxid: 10116)

>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus GN=Gtf2a1 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)

Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
            AED   ++EPLN  DD  + D +  E  +T+++V+ Q+DK+ R+K++WK  LKDGIM++
Sbjct: 305 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 362

Query: 371 NNKDILFNKATGEFDF 386
           N +D +F+KA G+ ++
Sbjct: 363 NGRDYIFSKAIGDAEW 378

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity.

Mus musculus (taxid: 10090)

>sp|Q54G80|TF2AA_DICDI Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum GN=gtf2a1 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
           +H VL Q++KV+R K++ KC  KDGIMH+N KD LFNKA GE 
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEM 307

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with tbp mediates transcriptional activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 252 ASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVV--------------NEDYNIVNTPAP 297
           A+S   +PQ DG I D  DD  S  N  + +  +              N    I  T   
Sbjct: 226 ANSRNDVPQTDGAIHD-LDDAGSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIED 284

Query: 298 NDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKS 357
           N+ +   P     ++A   D D+P    D DE  + ++G ++  Q +VL  +DKV   K+
Sbjct: 285 NEDEKKPPVDTPSDEAINSDLDDP----DSDEAPETEEGSDIG-QAIVLCLYDKVNHHKN 339

Query: 358 RWKCALKDGIMHINNKDILFNKATGEFDF 386
           +WKC  +DG++ +N KD LF KA GEF++
Sbjct: 340 KWKCVFRDGVVGVNGKDYLFFKANGEFEW 368

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with tbp mediates transcriptional activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster GN=TfIIA-L PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
           PLN  DD  + D D  E  +T ++++ Q+DK+TR++++WK  LKDGIM++  KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360

Query: 381 TGEFDF 386
            G+ ++
Sbjct: 361 NGDAEW 366

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity.

Drosophila melanogaster (taxid: 7227)

>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOA1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
            L+++DDD L  + +GEE    ++L+L  +DKVTRTK+RWKC+LKDG++ IN  D  F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278

Query: 380 ATGEFDF 386
           A  E ++
Sbjct: 279 AQVEAEW 285

TFIIA is a component of the transcription machinery of RNA polymerase II and implicated in the regulation of basal transcription. Interacts with TBP (the TATA-binding protein).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
           +++PLN  DD  + + D  +  +T+++++ Q+DK+ R+K+RWK  LKDG+M    +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459

Query: 378 NKATGEFDF 386
            KA GE ++
Sbjct: 460 AKAIGEAEW 468

May function as a testis specific transcription factor. Binds DNA in conjunction with GTF2A2 and TBP (the TATA-binding protein) and together with GTF2A2, allows mRNA transcription.

Mus musculus (taxid: 10090)

>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2 SV=2

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
           +++PLN  DD  + + D  +  +T ++++ Q+DK+ R+K++WK  LKDG+M    +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469

Query: 378 NKATGEFDF 386
            KA G+ ++
Sbjct: 470 AKAIGDAEW 478

May function as a testis specific transcription factor. Binds DNA in conjunction with GTF2A2 and TBP (the TATA-binding protein) and together with GTF2A2, allows mRNA transcription.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
225434853	393	PREDICTED: uncharacterized protein LOC10	0.935	0.918	0.677	1e-136
224054626	409	predicted protein [Populus trichocarpa]	0.955	0.902	0.657	1e-131
255558990	383	protein with unknown function [Ricinus c	0.896	0.903	0.656	1e-127
449450764	402	PREDICTED: transcription initiation fact	0.935	0.898	0.611	1e-122
356550303	391	PREDICTED: transcription initiation fact	0.927	0.915	0.618	1e-122
356557404	390	PREDICTED: transcription initiation fact	0.932	0.923	0.612	1e-121
356550305	384	PREDICTED: transcription initiation fact	0.919	0.924	0.609	1e-120
224104389	401	predicted protein [Populus trichocarpa]	0.945	0.910	0.630	1e-120
356538972	392	PREDICTED: uncharacterized protein LOC10	0.927	0.913	0.623	1e-118
356542286	382	PREDICTED: transcription initiation fact	0.911	0.921	0.612	1e-114

>gi|225434853|ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241598 [Vitis vinifera] gi|297746029|emb|CBI16085.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/413 (67%), Positives = 305/413 (73%), Gaps = 52/413 (12%)

Query: 3   TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
           +S T  VY+ VIEDVI+K                     IWEMKM+QAGV+   I+R++A
Sbjct: 4   SSMTSTVYVSVIEDVINKVRDEFVNNGGPGESVLSELQGIWEMKMVQAGVVTGPIERSTA 63

Query: 39  PKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
           PKQ +    P  PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG         
Sbjct: 64  PKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------- 114

Query: 98  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
                      DNS YNIPTG ++YP  A D GG T+ KSG        P   SPWM  R
Sbjct: 115 ---------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWMQQR 161

Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
           PPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH  GY IPQQDG
Sbjct: 162 PPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQQDG 220

Query: 218 AGDAMSEIFELEVSEFPGR---QDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLS 274
           AGD   E+FE+EVS+        D +T ANREIF  +A S V+IPQLDGPIPDPY+DVLS
Sbjct: 221 AGDPAPEVFEVEVSQGSNSIKGHDILTKANREIFPQVAGSYVRIPQLDGPIPDPYEDVLS 280

Query: 275 TPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNENDDDELDDV 333
           TPNIYNYQGVVNEDYNIVNTPAPNDIQA TPAV  QND  +DDDDE PLNENDDD+LDDV
Sbjct: 281 TPNIYNYQGVVNEDYNIVNTPAPNDIQAGTPAVGIQNDVGDDDDDEPPLNENDDDDLDDV 340

Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           +QGEELNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKA GEFDF
Sbjct: 341 EQGEELNTQHLVLAQFDKVTRTKSKWKCTLKDGIMHINNKDILFNKANGEFDF 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054626|ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|222845598|gb|EEE83145.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/426 (65%), Positives = 321/426 (75%), Gaps = 57/426 (13%)

Query: 1   MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
           MA+SAT  VY  VIEDVI K+                     WE K++QAGV+   I R+
Sbjct: 1   MASSATSTVYTEVIEDVIDKVRDEFINNGGPGETVLSELQGLWEKKLMQAGVLSGPIVRS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGS--TPLPG 94
           SA KQ  PGG +TPVHDLNVPYEGTEEYETPTAEILFPPTPL    QTPLPG+  TPLPG
Sbjct: 61  SANKQLVPGG-LTPVHDLNVPYEGTEEYETPTAEILFPPTPLPGSAQTPLPGNVQTPLPG 119

Query: 95  STPLPGSTPLPGTADNST-YNIPTGSS-DYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 152
           + P    TPLPG+ DNS+ YNI TGSS DYPTP SD+GG+T+ K+G  RPS +M  P SP
Sbjct: 120 NVP----TPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKAG--RPSHFMQSP-SP 172

Query: 153 WMNPRPPLSVDVN----------VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFP 202
            M+ RPPL V+V           VAYVEGRDE DRG SHQ LTQDFF MS+GKRKR DF 
Sbjct: 173 LMHQRPPLDVNVGKVLTNKCCAFVAYVEGRDEVDRGGSHQTLTQDFF-MSSGKRKRGDFA 231

Query: 203 AQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLD 262
            +Y+NGG+ IPQQDGA D+ SE+ ++E        D++TT NREI A ++ S VKIPQ+D
Sbjct: 232 PKYNNGGF-IPQQDGAVDSASEVSQVEC-------DTITTKNREILARVSRSYVKIPQVD 283

Query: 263 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPL 322
           GPIPDPYDD+LSTPNIYNYQGV NEDYNI NTPAPND+QASTPAVV+QND  +DDDDEPL
Sbjct: 284 GPIPDPYDDMLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAVVSQNDDVDDDDDEPL 343

Query: 323 NENDDDELDD--VDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
           NE+DDD+ D   VDQGEELNTQHL+LAQFDKVTRTKSRWKC LKDG+MHINN+DILFNKA
Sbjct: 344 NEDDDDDEDLDGVDQGEELNTQHLILAQFDKVTRTKSRWKCTLKDGVMHINNRDILFNKA 403

Query: 381 TGEFDF 386
           TGEF+F
Sbjct: 404 TGEFEF 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558990|ref|XP_002520518.1| protein with unknown function [Ricinus communis] gi|223540360|gb|EEF41931.1| protein with unknown function [Ricinus communis]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/405 (65%), Positives = 309/405 (76%), Gaps = 59/405 (14%)

Query: 9   VYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPG 45
           VYI VIEDV++K                    IWE+KM+QAGVI   I+R+S  K   PG
Sbjct: 11  VYIHVIEDVVNKVRDEFINNGPGETVLNELQAIWELKMMQAGVICGPIERSSGAKT-VPG 69

Query: 46  GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLP 105
           G ITPVHDLNVPYEGTEEYETPTAEILFPPTPL              PG+      TPLP
Sbjct: 70  GVITPVHDLNVPYEGTEEYETPTAEILFPPTPL--------------PGT----AQTPLP 111

Query: 106 GTADNST-YNIPTG-SSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVD 163
           G+ DNS+ YNIPTG +S+YPTP SDSGG+TEAK+G  RPS YM PP SPW+N RPPL  D
Sbjct: 112 GSVDNSSMYNIPTGPTSEYPTPVSDSGGSTEAKAG--RPSPYMQPP-SPWINQRPPL--D 166

Query: 164 VNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMS 223
           VN+AYVEGR+EADRGTS+QPLTQDFFT ++GKRKREDF AQY+NGG+ IPQQDGAGD   
Sbjct: 167 VNIAYVEGREEADRGTSNQPLTQDFFTGASGKRKREDFAAQYNNGGF-IPQQDGAGDTPF 225

Query: 224 EIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQG 283
           E+ ++E       +D+V +A+ EI +++    +KIPQLDGPIPDPYDDVLSTPNIYNYQG
Sbjct: 226 EVLQVE-------RDTVISADIEILSSVTRRGLKIPQLDGPIPDPYDDVLSTPNIYNYQG 278

Query: 284 VVNEDYNIVNTPAPNDIQASTPAVVTQN--DAAEDDDDEPLNENDDDELDDVDQGEELNT 341
           V NEDYNI NTPAPND+QASTPA++ QN     +DD+    +++DDD+LDDVDQGE++NT
Sbjct: 279 VANEDYNIANTPAPNDLQASTPAIIPQNDVVDDDDDEPLNEDDDDDDDLDDVDQGEDMNT 338

Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 339 QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450764|ref|XP_004143132.1| PREDICTED: transcription initiation factor IIA large subunit-like [Cucumis sativus] gi|449496658|ref|XP_004160191.1| PREDICTED: transcription initiation factor IIA large subunit-like [Cucumis sativus]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/427 (61%), Positives = 305/427 (71%), Gaps = 66/427 (15%)

Query: 1   MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
           MATS T  +YI VIEDVI+K+                    WE KM+QAG +   I+R S
Sbjct: 1   MATS-TSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIER-S 58

Query: 38  APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
           AP +P PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG         
Sbjct: 59  APSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPG--------- 109

Query: 98  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSG---------GNTEAKSGNGRPSSYMPP 148
                    TADN+ YN+PTG SD+    +D+          GN   +  +GRP+ YM P
Sbjct: 110 ---------TADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQP 160

Query: 149 PPSPWMNPRPPLSVDVNVAYVEGRDEA-DRGTS--HQPLTQDFFTMSAGKRKREDFPAQY 205
           P   WM  R P  VDVN+AYVEGR+EA DRG +  H  LTQDFF M++GKRKR+DF +QY
Sbjct: 161 PS--WMGQRTP--VDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQY 216

Query: 206 HNGGYNIPQQDGAGDAMSEIFELEVS---EFPGRQDSVTTANREIFANLASSSVKIPQLD 262
              G+ IPQQDGAGDA + +FE+E+S      GR  ++T+A     +++  S +KIPQLD
Sbjct: 217 QANGF-IPQQDGAGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLD 275

Query: 263 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDD-EP 321
           GP+PDPYDDVLSTPNIYNYQGV NEDYNI NTPAPND  A TPAVVTQ+D  E+++D EP
Sbjct: 276 GPMPDPYDDVLSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEP 335

Query: 322 -LNE-NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
            LNE +DDD+LDDVDQGEEL+TQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNK
Sbjct: 336 SLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 395

Query: 380 ATGEFDF 386
           ATGEFDF
Sbjct: 396 ATGEFDF 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550303|ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like isoform 1 [Glycine max]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/419 (61%), Positives = 298/419 (71%), Gaps = 61/419 (14%)

Query: 1   MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
           MA S T  VYI VIEDV+ K+                     WE KM+QAG +   I+R+
Sbjct: 1   MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
           +A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG        
Sbjct: 61  TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111

Query: 97  PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
                     T DNSTYNIPTG SDYP+  +D+GGN + K    RP+ YM  P SPWMN 
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158

Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
           RPPL  DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D  +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215

Query: 217 GAGDAMSEIFELEVSEFPGRQDSV----TTANREIFANLASSSVKIPQLDGPIPDPYDDV 272
           GAGDA    FE+EVS   GR  S+    T +  ++ A+L  S+ +IPQLDGPIP   DDV
Sbjct: 216 GAGDATHGDFEIEVS---GRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDV 272

Query: 273 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDD 327
           LSTPNIYNY  V +EDYNI NTPAP ++ ASTPA++ QN+   D D     + PLNE DD
Sbjct: 273 LSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDD 332

Query: 328 DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           D+LDD++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 333 DDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557404|ref|XP_003547006.1| PREDICTED: transcription initiation factor IIA large subunit-like [Glycine max]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/416 (61%), Positives = 298/416 (71%), Gaps = 56/416 (13%)

Query: 1   MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
           MA S T  VYI VIEDV+ K+                     WE KM+QAG +   I+R+
Sbjct: 1   MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
           SA K   PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG        
Sbjct: 61  SAAKA-TPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPG-------- 111

Query: 97  PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
                     T DNSTYNIPTG++DYP+  +D+GGN + K    RP+ YM P  SPWMN 
Sbjct: 112 ----------TGDNSTYNIPTGANDYPSSGNDTGGNADGKGA--RPAPYMQPS-SPWMNQ 158

Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
           RPPL  DVNVAYVEGRDEAD+GTS+QPLTQDFFT ++GKRKR D  +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADKGTSNQPLTQDFFTRTSGKRKRNDLTSQYNVGGY-IPQQD 215

Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANRE-IFANLASSSVKIPQLDGPIPDPYDDVLST 275
           GAGDA   +FE+EVS      +S  T ++E + A+L  S+ +IPQLDGPIP   DDVLST
Sbjct: 216 GAGDAAHGVFEIEVSGGGISINSHHTISKEKMSADLERSTSRIPQLDGPIPYD-DDVLST 274

Query: 276 PNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDEL 330
           PNIYNY  V +EDYNI NTPAP ++ ASTPA++ QN+   D D     + PLNE DDD+L
Sbjct: 275 PNIYNYGEVFSEDYNISNTPAPPEVPASTPALLAQNEVGNDFDDDDDDEPPLNEEDDDDL 334

Query: 331 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           DD++QG++ NT HLVLAQFDKV RTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 335 DDMEQGDDQNTHHLVLAQFDKVARTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550305|ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like isoform 2 [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/415 (60%), Positives = 292/415 (70%), Gaps = 60/415 (14%)

Query: 1   MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
           MA S T  VYI VIEDV+ K+                     WE KM+QAG +   I+R+
Sbjct: 1   MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
           +A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG        
Sbjct: 61  TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111

Query: 97  PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
                     T DNSTYNIPTG SDYP+  +D+GGN + K    RP+ YM  P SPWMN 
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158

Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
           RPPL  DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D  +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215

Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
           GAGDA    FE+E  +          +  ++ A+L  S+ +IPQLDGPIP   DDVLSTP
Sbjct: 216 GAGDATHGDFEIEFLKI------AYISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTP 269

Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDELD 331
           NIYNY  V +EDYNI NTPAP ++ ASTPA++ QN+   D D     + PLNE DDD+LD
Sbjct: 270 NIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLD 329

Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           D++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 330 DMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104389|ref|XP_002313420.1| predicted protein [Populus trichocarpa] gi|222849828|gb|EEE87375.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/422 (63%), Positives = 304/422 (72%), Gaps = 57/422 (13%)

Query: 1   MATS-ATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDR 35
           MA+S AT  VYI VIEDVI+K+                     WE KM+QAG I   IDR
Sbjct: 1   MASSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWETKMMQAGAICGTIDR 60

Query: 36  TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTP--LQTPIQTPLPGSTPLP 93
           +SA K P PGGPITPVHDLNVPYEGTEEYETPTAEILFPP         QTPLPG+    
Sbjct: 61  SSANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEILFPPCANTFTWNAQTPLPGN---- 116

Query: 94  GSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 152
                   TPLPG+ DNS+ YNIPTGSSDYPTP SD+GG+T+ K+G  RPS +M    S 
Sbjct: 117 ------AQTPLPGSVDNSSMYNIPTGSSDYPTPVSDAGGSTDGKAG--RPSPFMV---ST 165

Query: 153 WMNPRPPL----SVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNG 208
            +  +P L         VAYVEGRDE DRGTSHQ LTQDFF M +GKRKREDF  +Y+NG
Sbjct: 166 DLIFQPSLVLTNKCCAFVAYVEGRDEVDRGTSHQALTQDFF-MPSGKRKREDFAPKYNNG 224

Query: 209 GYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDP 268
           G+ IPQQDGAGD+ SE+ ++E++         TT N+EI A ++ S +KIPQ+DGPIPDP
Sbjct: 225 GF-IPQQDGAGDSASEVSQVELN----VNSYFTTKNKEILARVSRSYLKIPQVDGPIPDP 279

Query: 269 YDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQ---NDAAEDDDDEPLNEN 325
           YDDVLSTPNIYNYQGV NEDYNI NTPAPND  ASTPAVV+Q    D  +DD+    +++
Sbjct: 280 YDDVLSTPNIYNYQGVANEDYNIANTPAPNDPLASTPAVVSQNDVADDDDDDEPLNEDDD 339

Query: 326 DDDELDDVDQGEELNT-QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
           DD++LDDVDQGEELNT QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF
Sbjct: 340 DDEDLDDVDQGEELNTPQHLVLAQFDKVTRTKSRWKCILKDGIMHINNKDILFNKATGEF 399

Query: 385 DF 386
           DF
Sbjct: 400 DF 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538972|ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/420 (62%), Positives = 301/420 (71%), Gaps = 62/420 (14%)

Query: 1   MATSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRT 36
           MA S T  VYI+VI+DV++K                     IWE KM+QAG I   I+R+
Sbjct: 1   MAASTTSQVYIQVIDDVMNKVRDEFVNNGGPGDEVLKELQSIWESKMMQAGAIVGPIERS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
            APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG        
Sbjct: 61  GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111

Query: 97  PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
                     T DNS YNIPTG SDYP+  ++ G N E K G  RP  YM PPPSPW N 
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGANNEIKGG--RPGPYMQPPPSPWTNQ 159

Query: 157 ------RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGY 210
                 R PL  DVNVAYVEGRDEA+RG S+QPLTQDFF MS+GKRKR++  +QY+ GGY
Sbjct: 160 NQNQNQRAPL--DVNVAYVEGRDEAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY 216

Query: 211 NIPQQDGAGDAMSEIFELEVSEFPGRQDS-VTTANREIFANLASSSVKIPQLDGPIPDPY 269
            IPQQDGAGDA S+I E+EV       D+  +T+  ++ A     + +IPQLDGPIP  Y
Sbjct: 217 -IPQQDGAGDAASQILEIEVYGGGMSIDAGHSTSKGKMPAQSDRPASQIPQLDGPIP--Y 273

Query: 270 DD-VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNEND 326
           DD VLSTPNIYNY GV NEDYNI NTPAP+++ ASTPA + QN+  E+DDD+  PLNEND
Sbjct: 274 DDDVLSTPNIYNY-GVFNEDYNIANTPAPSEVPASTPAPIAQNEVDEEDDDDEPPLNEND 332

Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           DD+LDD+DQGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 333 DDDLDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542286|ref|XP_003539600.1| PREDICTED: transcription initiation factor IIA large subunit-like isoform 1 [Glycine max]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/416 (61%), Positives = 294/416 (70%), Gaps = 64/416 (15%)

Query: 1   MATSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRT 36
           MA S+T  VYI+VI+DV+ K                     IWE KM+QAG I   I+R+
Sbjct: 1   MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60

Query: 37  SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
            APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG        
Sbjct: 61  GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111

Query: 97  PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 154
                     T DNS YNIPTG SDYP+  ++ G N E K G  RP  YM PPP  S   
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGENNEIKGG--RPGPYMQPPPWTSQNQ 159

Query: 155 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 214
           N R PL  DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++  +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215

Query: 215 QDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD-VL 273
           QDGAGDA S+IFE+EV  F       +T+N ++ A+    + +IPQ DGPIP  YDD V+
Sbjct: 216 QDGAGDADSQIFEIEVWHF------FSTSNGKMPAHSDRPASQIPQFDGPIP--YDDDVV 267

Query: 274 STPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNENDDDELD 331
           STPN+YNY GV NEDYNI NTPA +D+ ASTPA V QN+  E+DDD+  PLNENDDD+  
Sbjct: 268 STPNMYNY-GVFNEDYNIANTPASSDVPASTPAPVAQNEVDEEDDDDDEPLNENDDDDDL 326

Query: 332 DVD-QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           D   QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 327 DDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2024977	375	AT1G07480 "AT1G07480" [Arabido	0.681	0.701	0.532	1.1e-76
TAIR|locus:2025027	375	AT1G07470 "AT1G07470" [Arabido	0.678	0.698	0.530	2.9e-76
TAIR|locus:2168464	186	AT5G59230 [Arabidopsis thalian	0.121	0.252	0.553	1.5e-20
POMBASE|SPBC28F2.09	369	toa1 "transcription factor TFI	0.116	0.121	0.488	2e-08
DICTYBASE|DDB_G0290327	310	gtf2a1 "transcription initiati	0.108	0.135	0.619	2e-08
ZFIN|ZDB-GENE-030131-2694	369	gtf2a1 "general transcription	0.121	0.127	0.446	2.7e-08
RGD|69246	377	Gtf2a1 "general transcription	0.121	0.124	0.446	1.5e-07
MGI|MGI:1933277	378	Gtf2a1 "general transcription	0.121	0.124	0.446	1.6e-07
UNIPROTKB|G4MXK1	407	MGG_01235 "Uncharacterized pro	0.116	0.110	0.488	1.6e-07
UNIPROTKB|F1NTD4	379	GTF2A1 "Uncharacterized protei	0.121	0.124	0.446	3.4e-07

TAIR|locus:2024977 AT1G07480 "AT1G07480" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
 Identities = 149/280 (53%), Positives = 179/280 (63%)

Query:   108 ADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRXXXXXXXXXXXXXXXXXXXXVDVNV 166
             ADNS+ YNIPTGSSDYPTP +++G N + K+                        +DVNV
Sbjct:   112 ADNSSMYNIPTGSSDYPTPGTENGVNIDVKA--------RPSPYMPPPSPWTNPRLDVNV 163

Query:   167 AYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIF 226
             AYV+GRDE +RG S+Q  TQD F  S+GKRKR+D    Y NGG +IPQQDGAGDA+ E  
Sbjct:   164 AYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDGAGDAIPEA- 221

Query:   227 ELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVN 286
               E   F  R  S+   +R++  +  SSS KIPQ+DGP+PDPYD++LSTPNIY+YQG  +
Sbjct:   222 NFECDAF--RITSI--GDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP-S 276

Query:   287 EDYNIVNTPAPNDIQASTPAVVTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVL 346
             E++N   TPAPN+IQ STP  V Q                             NTQHLVL
Sbjct:   277 EEFNEARTPAPNEIQTSTPVAV-QNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVL 335

Query:   347 AQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             AQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct:   336 AQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005672 "transcription factor TFIIA complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

TAIR|locus:2025027 AT1G07470 "AT1G07470" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 149/281 (53%), Positives = 176/281 (62%)

Query:   108 ADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRXXXXXXXXXXXXXXXXXXXXVDVNV 166
             ADNS+ YNIPTGSSDYPTP +++G N + K+                        +DVNV
Sbjct:   112 ADNSSMYNIPTGSSDYPTPGTENGVNIDVKA--------RPSPYMPPPSPWTNPRLDVNV 163

Query:   167 AYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEI- 225
             AYV+GRDE +RG S+Q  TQD F  S+GKRKR+D  A Y NGG +IPQQDGA DA+ E  
Sbjct:   164 AYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGG-SIPQQDGASDAIPEAN 222

Query:   226 FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVV 285
             FE                +R+I  +L  SS KIPQ+DGP+PDPYD++LSTPNIY+YQG  
Sbjct:   223 FECAALRI------TYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP- 275

Query:   286 NEDYNIVNTPAPNDIQASTPAVVTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLV 345
             NE++N   TPAPN+IQ STP  V                               NTQHLV
Sbjct:   276 NEEFNEARTPAPNEIQTSTPVAVPNDIIEDDEELLNEDDDDDELDDLESGEDM-NTQHLV 334

Query:   346 LAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             LAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKATGEFDF
Sbjct:   335 LAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005672 "transcription factor TFIIA complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

TAIR|locus:2168464 AT5G59230 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query:   340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             N QHLV+ QFDKV R+K++W+C    G+M IN K++LF++ATG+F+F
Sbjct:   140 NIQHLVMCQFDKVKRSKNKWECKFNAGVMQINGKNVLFSQATGDFNF 186

GO:0005634 "nucleus" evidence=ISM

GO:0005672 "transcription factor TFIIA complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

POMBASE|SPBC28F2.09 toa1 "transcription factor TFIIA complex large subunit Toa1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 131 (51.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query:   342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             Q +VL  +DKV   K++WKC  +DG++ +N KD LF KA GEF++
Sbjct:   324 QAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEFEW 368

GO:0000991 "core RNA polymerase II binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005672 "transcription factor TFIIA complex" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

DICTYBASE|DDB_G0290327 gtf2a1 "transcription initiation factor IIA alpha chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query:   342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGE 383
             +H VL Q++KV+R K++ KC  KDGIMH+N KD LFNKA GE
Sbjct:   265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGE 306

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISS

GO:0005672 "transcription factor TFIIA complex" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-2694 gtf2a1 "general transcription factor IIA, 1" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
 Identities = 21/47 (44%), Positives = 39/47 (82%)

Query:   340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct:   323 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVFSKAIGDAEW 369

GO:0005672 "transcription factor TFIIA complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

RGD|69246 Gtf2a1 "general transcription factor IIA, 1" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
 Identities = 21/47 (44%), Positives = 39/47 (82%)

Query:   340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct:   331 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 377

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005672 "transcription factor TFIIA complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

MGI|MGI:1933277 Gtf2a1 "general transcription factor II A, 1" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
 Identities = 21/47 (44%), Positives = 39/47 (82%)

Query:   340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct:   332 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0003677 "DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005672 "transcription factor TFIIA complex" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|G4MXK1 MGG_01235 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 138 (53.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 22/45 (48%), Positives = 35/45 (77%)

Query:   342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             Q  +L  +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct:   363 QQQMLCLYDKVQRVKNKWKCTLKDGVLCVNGKEYVFHKATGEYEW 407

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|F1NTD4 GTF2A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
 Identities = 21/47 (44%), Positives = 39/47 (82%)

Query:   340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
             +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct:   333 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKAIGDAEW 379

GO:0005672 "transcription factor TFIIA complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-40
cd07976	102	cd07976, TFIIA_alpha_beta_like, Precursor of TFIIA	2e-27
COG5149	293	COG5149, TOA1, Transcription initiation factor IIA	2e-12

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score =  144 bits (366), Expect = 3e-40
 Identities = 101/420 (24%), Positives = 142/420 (33%), Gaps = 131/420 (31%)

Query: 9   VYIRVIEDVIS--------------------KIWEMKMIQAGVIIDRTSAPKQPAPGGPI 48
           VY  VIEDVI+                    K+WE K+ Q+GV                 
Sbjct: 2   VYESVIEDVINDVREDFEDEGVDEQVLQDLKKLWEKKLSQSGV----------------- 44

Query: 49  TPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTA 108
                                   FP  P             PLP   P      LP   
Sbjct: 45  --AE--------------------FPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAG- 81

Query: 109 DNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAY 168
           D   +N PTGS     PA      T A        +     P      + P+ V  N A 
Sbjct: 82  DQQQHNTPTGSPAANPPA------TFALPAGPAGPTIQ-TEPGQLYPVQVPVMVTQNPAN 134

Query: 169 VEGRDEADRGTSHQPLTQDFFTMSAGKR--------KREDFPAQY-HNGGYNIPQQDGAG 219
               D+  +  + Q L Q +   ++G+         K ++   Q   NG     Q DGAG
Sbjct: 135 S-PLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAG 193

Query: 220 DAMSE----------IFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPY 269
           D  SE            E  +    G          +     A SS +         D  
Sbjct: 194 DDESEALVRLREADGTLEQRIKGAEGGGAMK---VLKQPKKQAKSSKRRTIAQIDGIDSD 250

Query: 270 DDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDE 329
           D+                                       + + +DDD++ +  + DD 
Sbjct: 251 DE--------------------------------------GDGSDDDDDEDAIESDLDDS 272

Query: 330 LDDV--DQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
            DDV  + GE+L +T +++L Q+DKV R+K++WKC LKDGIM IN KD +F KATGE ++
Sbjct: 273 DDDVSDEDGEDLFDTDNVMLCQYDKVQRSKNKWKCTLKDGIMTINGKDYVFQKATGEAEW 332

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|199899 cd07976, TFIIA_alpha_beta_like, Precursor of TFIIA alpha and beta subunits and similar proteins

 Score =  103 bits (260), Expect = 2e-27
 Identities = 29/46 (63%), Positives = 39/46 (84%)

Query: 341 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           T+++VL Q+DKVTR K++WKC LKDGIM +N KD +F KATGEF++
Sbjct: 57  TENIVLCQYDKVTRVKNKWKCTLKDGIMTLNGKDYVFQKATGEFEW 102

Transcription factor II A (TFIIA) is one of the general transcription factors for RNA polymerase II. TFIIA increases the affinity of TATA-binding protein (TBP) for DNA in order to assemble the initiation complex. TFIIA also functions as an activator during development and differentiation, and is involved in transcription from TATA-less promoters. TFIIA is composed of more than one subunit in various organisms. Mammalian TFIIA large subunits (TFIIA alpha and beta) and the smaller subunit (TFIIA gamma) form a heterotrimer. TFIIA alpha and beta are encoded by a single gene (TFIIA_alpha_beta), its protein product is post-translationally processed and cleaved. TOA1 and TOA2 are the two subunits of Yeast TFIIA which correspond to Mammalian TFIIA_alpha_beta and TFIIA gamma, respectively. TOA1 and TOA2 form a heterodimeric protein complex. TFIIA_alpha_beta alone is sufficient for transcription in early embryogenesis, but the cleaved forms, TFIIA alpha and TFIIA beta, represent the vast majority of TFIIA in most differentiated cells. The exact functional differences between cleaved and uncleaved forms are not yet clear. This model also contains paralogs of the canonical TFIIA_alpha_beta, such as the human ALF, which may be involved in gametogenesis and early embryogenesis (and is also subject to proteolytic cleavage). Length = 102

>gnl|CDD|227478 COG5149, TOA1, Transcription initiation factor IIA, large chain [Transcription]

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 305 PAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALK 364
               T  D     D   L+++D D  D   +G + +  + +L  +DKV  +K +WKC  K
Sbjct: 215 GKPTTAKDEGMFSD---LDDSDVDSGDSEIEGTKGS-TNCMLCLYDKVNMSKGKWKCTFK 270

Query: 365 DGIMHINNKDILFNKATGEFDF 386
           DG++ INN D +FNKA GE ++
Sbjct: 271 DGVVSINNIDYVFNKAQGELEW 292

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
KOG2652	348	consensus RNA polymerase II transcription initiati	100.0
PF03153	375	TFIIA: Transcription factor IIA, alpha/beta subuni	100.0
COG5149	293	TOA1 Transcription initiation factor IIA, large ch	99.88
COG5149	293	TOA1 Transcription initiation factor IIA, large ch	89.23

>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]

Probab=100.00  E-value=1.7e-65  Score=494.77  Aligned_cols=312  Identities=35%  Similarity=0.550  Sum_probs=263.5

Q ss_pred             CCcc-ccceEEeehHHHHHHH--------------------HHHHhhhhccee---eecCCCCCCCCCCCCCCcccccCC
Q 016630            1 MATS-ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNV   56 (386)
Q Consensus         1 ma~s-~~s~vyi~viedvi~k--------------------~we~km~q~g~i---i~r~~a~~~~~p~gp~tpvhDLNv   56 (386)
                      ||+. +++.||.|||||||++                    |||.||||+||.   ++|.+++.+ .+|+.   .|  ||
T Consensus         1 ~~~~~~v~kvY~~VIeDVI~~vRe~F~~~GiDeqvL~eLk~lWe~Kl~qs~~~~~~~d~~s~~~p-~~~~q---~~--~~   74 (348)
T KOG2652|consen    1 MASTNTVSKVYESVIEDVINNVREDFLENGIDEQVLSELKNLWETKLIQSGVATFPWDRESNQRP-PPGVQ---LH--HV   74 (348)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhcccccCcccccccCC-CCccc---cc--Cc
Confidence            4444 8999999999999999                    999999999999   999999987 55663   45  89


Q ss_pred             CCCC-cccccCCCceeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCC--CCCCCCCCC
Q 016630           57 PYEG-TEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPG-TADNSTYNIPTGSSDYP--TPASDSGGN  132 (386)
Q Consensus        57 Pyeg-tEEyetPtaemLFpPtPlqtp~qTPlp~~~~~~~~~~~~~~~~~~g-~~~~~myniptg~s~yp--~~~~d~g~~  132 (386)
                      ||++ |.+|+||+   +||.+++|++..++||                  | .+..+|||||.+.+.|+  .|......|
T Consensus        75 ~~~~~~~~~~~Pa---~~~~~~q~~~~~~~l~------------------~~~~~~s~~~i~~~~t~~~~~~P~~q~~~N  133 (348)
T KOG2652|consen   75 PLQSATANLATPA---VFPGAPQQTPAGVPLP------------------GLSGHLSKANIPLPSTATNGQHPSQQVNVN  133 (348)
T ss_pred             ccccccccccCCc---cccccccccCcCccCc------------------cccccccccCccccccccCCcCcccccccc
Confidence            9999 79999999   8999999999999999                  7 67899999999999998  677776666


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeecCc-----cccccCCCCCCCccceecccccccccccCCcCCCC
Q 016630          133 TEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGR-----DEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHN  207 (386)
Q Consensus       133 ~d~k~~~grps~ym~~~pspw~~~~~~l~vdVnvAYvegr-----de~drg~s~q~lTqdfftmSSGKRKRdD~~~qy~~  207 (386)
                      .      -++.|+|+| .|.|.++|+.    ++  ||.+|     ..+.+|..+++.||+-|.-++|  |+.+.-.+|.+
T Consensus       134 ~------~q~~p~~~p-~s~~~~~q~s----~~--~v~~~~~ip~~~p~~~~~~~~~tqq~~~~~~g--~~pq~~~~~~~  198 (348)
T KOG2652|consen  134 S------TQPVPALSP-WSLQLNTQKS----QQ--TVLQQSAIPPSGPVDGNHNQPVTQQILVPPGG--KSPQSSFHYIN  198 (348)
T ss_pred             c------cCCCcCcCc-cccccccccc----cc--cccccccccccCcccccccCccccccccCCCC--CCcccccceec
Confidence            6      488899999 9999985554    33  99999     8999999999999999988888  88888888888


Q ss_pred             CCcccccCCCCCCCcccceeeeecCCCCccccccccchhhhhhhhccccccCCCCCCCCCCCCCcCCCCcccccCCcccc
Q 016630          208 GGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNE  287 (386)
Q Consensus       208 gg~~iPQQDGa~D~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IPQlDGp~pdpydd~~~tpniy~yqGv~~E  287 (386)
                      ++  |||++|+++...+...       ..+.++....|...+.+.....+|.|+||++..     ++.+++|-+++  .|
T Consensus       199 ~~--~~q~~~s~nd~~~~~~-------~~~a~~~~~~~~~~~~~~s~~~~i~qv~~~~~~-----~~Q~Dg~~~~~--eE  262 (348)
T KOG2652|consen  199 LN--IPQVDGSENDVEQIDG-------TDLAIHILKDRMVPRDSVSEKDKIAQVDLSLRK-----ILQVDGTGDTS--EE  262 (348)
T ss_pred             cC--Cccccccccccccccc-------ccccccccccccccccccchhhhhhhhcccccc-----eeecccccccc--cc
Confidence            88  8999999999888765       236678888888888888899999999999984     78899999988  56


Q ss_pred             cccccCCCCCCCcccCCCcccccCCcCCCCCCCCCCCCCCC--CCcccccccCC-CCCCEEEEEEeeeeecCCceeEEee
Q 016630          288 DYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDD--ELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALK  364 (386)
Q Consensus       288 dyn~~~~~ap~e~~ast~~~~~~~~~~de~dEdpLNsdDDd--d~dD~Dd~Ed~-~t~NvVLCqYDKV~R~KNKWKc~LK  364 (386)
                      |=||-.               ..+ ...+++|+.+|+||||  ++++++.++|. +|+||||||||||+|+||||||+||
T Consensus       263 ~e~Eee---------------~~~-~~~~~dee~~n~Dd~D~~EeeplnsedDvsdt~nvVvCqyDKV~RsKnKWKc~LK  326 (348)
T KOG2652|consen  263 DENEEE---------------DDD-PDPDEDEELGNSDDDDGVEEEPLNSEDDVSDTQNVVVCQYDKVNRSKNKWKCYLK  326 (348)
T ss_pred             cccccc---------------ccC-cccchhhhcccccccCccccccccCcccccccceeEEEeeeeeccccceeeEEee
Confidence            444411               111 1133567777877755  56666665566 4899999999999999999999999


Q ss_pred             cceeEECCeeeeeecccccccC
Q 016630          365 DGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       365 DGIm~INGKDyvF~KatGEfEw  386 (386)
                      |||||||||||||+||+|||||
T Consensus       327 DGIM~ingkDY~F~KA~GeaEW  348 (348)
T KOG2652|consen  327 DGVMHINGKDYVFQKAQGEAEW  348 (348)
T ss_pred             cceEEeCCceeEeeecccccCC
Confidence            9999999999999999999999

>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site

Probab=100.00  E-value=7.6e-57  Score=425.01  Aligned_cols=309  Identities=34%  Similarity=0.509  Sum_probs=71.3

Q ss_pred             eEEeehHHHHHHH--------------------HHHHhhhhccee---eecCCCCCCCCCCCCCCcccccCCCCCCcccc
Q 016630            8 MVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEY   64 (386)
Q Consensus         8 ~vyi~viedvi~k--------------------~we~km~q~g~i---i~r~~a~~~~~p~gp~tpvhDLNvPyegtEEy   64 (386)
                      .||.+||||||++                    |||.||+|+||+   .++..++.++.+..|..+              
T Consensus         1 kvY~~VI~dVI~~vr~dF~~~Gvde~vL~eLk~~We~KL~qs~v~~~~~d~~~~~~~~~~~~p~~~--------------   66 (375)
T PF03153_consen    1 KVYESVIDDVINNVREDFEEEGVDEQVLQELKQLWESKLSQSGVADFPWDPPPAPPPPPPQQPQPP--------------   66 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHH-SS--TTGGGG---------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCcccccCCCCc--------------
Confidence            4899999999999                    999999999999   555555444233333222              


Q ss_pred             cCCCceeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 016630           65 ETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPG-TADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPS  143 (386)
Q Consensus        65 etPtaemLFpPtPlqtp~qTPlp~~~~~~~~~~~~~~~~~~g-~~~~~myniptg~s~yp~~~~d~g~~~d~k~~~grps  143 (386)
                            +.||+++++++ +++++                  . ...+.++++|++.+.+..+......+.  +.  +++.
T Consensus        67 ------~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~  117 (375)
T PF03153_consen   67 ------QSTPPSPSQQP-QAPQA------------------IPQGQSQQQNQPSSMSNSNPPATFSTPPG--QV--PAPP  117 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------ccCCCCCCCCc-ccccc------------------cCCCCccccccccccCcCCCcccccCCCc--cc--CCCC
Confidence                  78888888888 77776                  3 455677888888777633322221111  33  5788


Q ss_pred             CCCCCCCCCCCCCCCCcccceeeeeecCccccccCCCCCCCccceecccccccc-----------cccCCcCCCCCCc-c
Q 016630          144 SYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK-----------REDFPAQYHNGGY-N  211 (386)
Q Consensus       144 ~ym~~~pspw~~~~~~l~vdVnvAYvegrde~drg~s~q~lTqdfftmSSGKRK-----------RdD~~~qy~~gg~-~  211 (386)
                      ++|++ |..|++.+.|..+..+.++..++..+.+....+++++.|+.+++.+++           +.....++..|+. .
T Consensus       118 ~iq~~-pG~~~~~~~P~~~~~~~~~~~~~~~~aqq~~~qq~~q~~g~~aa~q~~~~~qq~q~~~~~~~~~~~~~~~~~~~  196 (375)
T PF03153_consen  118 TIQQP-PGQQYQVQVPSMNNQPPGNQQIAQQPAQQRAAQQLQQPYGQPAAQQISQQQQQQQPQQQQQQQQQQQQPGQQVQ  196 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCC-CccccCcccCCccCCcccccccccccccccccccccccccccccccCCccccccccccccccccccccCCCccC
Confidence            88888 999999999998999999999999999999999999999999999999           5666666766665 3


Q ss_pred             cccCCCCCCCcc----cceeeeec-CC--------------------CCccccccccchhhhh--hhhccccccCCCCCC
Q 016630          212 IPQQDGAGDAMS----EIFELEVS-EF--------------------PGRQDSVTTANREIFA--NLASSSVKIPQLDGP  264 (386)
Q Consensus       212 iPQQDGa~D~~~----e~~~~e~~-~~--------------------~~~~~~~~~~~~~~~~--~~~~~~~~IPQlDGp  264 (386)
                      ++|.||+++...    +..+.... ..                    ...+............  ...+...+|+|+||+
T Consensus       197 ~~Qtdga~d~~~~~~~~~~~~~~~~~~~~~d~~L~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Q~DG~  276 (375)
T PF03153_consen  197 QQQTDGAGDSESNSQPRRLEAAVPLQRNEIDQVLRSQIENRAMQLEGGGLMSPLSQASKASKQNKSSNSESSRIPQLDGA  276 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccCCCCcccchhccccccccccccccccccccccccccccccchhhccchhhcccccccccccccccccccccccCC
Confidence            588999999852    11111111 00                    0000000000000000  011112469999999


Q ss_pred             CCCCCCCcCCCCcccccCCcccccccccCCCCCCCcccCCCcccccCCcCCCCCCCCCCCCCCCCCc---ccccccCCCC
Q 016630          265 IPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELD---DVDQGEELNT  341 (386)
Q Consensus       265 ~pdpydd~~~tpniy~yqGv~~Edyn~~~~~ap~e~~ast~~~~~~~~~~de~dEdpLNsdDDdd~d---D~Dd~Ed~~t  341 (386)
                      .++..++.+.      +....+||+.+                    .+.++++++.+|||+|+++|   |+|.++++++
T Consensus       277 ~d~~~~e~~~------~~~~~d~d~~~--------------------~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~  330 (375)
T PF03153_consen  277 GDDSDDEEDD------DDDDDDEDDED--------------------KDKDEDDEDAINSDLDDSDDDVSDEDDEDDFDT  330 (375)
T ss_dssp             ---------------------------------------------------------------------B-------STT
T ss_pred             CCCccccccc------ccccccccccc--------------------ccccccccccccCCcCCccccccccccccccCc
Confidence            9886654433      34456666610                    01112334445555433333   3344456799


Q ss_pred             CCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       342 ~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      +||||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus       331 ~~~~~c~~~kv~r~k~~wk~~lk~g~~~~~~~d~~f~~~~ge~~w  375 (375)
T PF03153_consen  331 DNVVLCQYDKVTRVKNKWKCTLKDGIMHINGKDYVFQKATGEFEW  375 (375)
T ss_dssp             S-EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEE-
T ss_pred             CCEEEEEeeccccccceeEEEeeeeEEEECCeEEEEeeeeeeecC
Confidence            999999999999999999999999999999999999999999999

After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.

>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]

Probab=99.88  E-value=3.8e-23  Score=195.32  Aligned_cols=66  Identities=38%  Similarity=0.685  Sum_probs=52.9

Q ss_pred             CCCCCCCCCCccccccc---CCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          321 PLNENDDDELDDVDQGE---ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       321 pLNsdDDdd~dD~Dd~E---d~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      ..+||.||+++|.-+.+   .....|+|||+||||+|+|+||||+|||||+.|||+||+|+||+|||||
T Consensus       224 ~~~sdlddsD~d~~~se~egt~~~~n~mlCLYdKVn~~K~kWKCtfkdGvV~In~~Dy~F~kAqgE~EW  292 (293)
T COG5149         224 GMFSDLDDSDVDSGDSEIEGTKGSTNCMLCLYDKVNMSKGKWKCTFKDGVVSINNIDYVFNKAQGELEW  292 (293)
T ss_pred             ccccccCCccccccccccccCCCCceEEEEEeeecccccceeeEEeecceEEecCceeEEeeccceEee
Confidence            45555444333332222   2345699999999999999999999999999999999999999999999

>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]

Probab=89.23  E-value=0.15  Score=50.13  Aligned_cols=32  Identities=41%  Similarity=0.725  Sum_probs=27.8

Q ss_pred             CCccccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630            1 MATSATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI   32 (386)
Q Consensus         1 ma~s~~s~vyi~viedvi~k--------------------~we~km~q~g~i   32 (386)
                      |.-|.++.||-|||+|||+.                    ||..|+..--|-
T Consensus         1 msns~~~~vy~~vi~~vi~~~r~dfe~~gvdd~tlrelqnlwq~kl~~t~va   52 (293)
T COG5149           1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVA   52 (293)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhhHHHhcCccHHHHHHHHHHHHHhhhhheee
Confidence            66678999999999999998                    999999876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	386
1rm1_C	286	Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex L		3e-09
1ytf_C	79	Yeast TfiiaTBPDNA COMPLEX Length = 79		1e-07
1nvp_C	76	Human TfiiaTBPDNA COMPLEX Length = 76		2e-07

>pdb|1RM1|C Chain C, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex Length = 286

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           ++L+L  +DKVTRTK+RWKC+LKDG++ IN  D  F KA  E ++
Sbjct: 241 ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285

>pdb|1YTF|C Chain C, Yeast TfiiaTBPDNA COMPLEX Length = 79

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           ++L+L  +DKVTRTK+RWKC+LKDG++ IN  D  F KA  E ++
Sbjct: 34  ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78

>pdb|1NVP|C Chain C, Human TfiiaTBPDNA COMPLEX Length = 76

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 39/47 (82%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct: 30  DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
1nh2_C	79	Transcription initiation factor IIA large chain; t	1e-26
1nvp_C	76	Transcription initiation factor IIA beta chain; tr	4e-25
1rm1_C	286	Transcription initiation factor IIA large chain; y	3e-18
1rm1_C	286	Transcription initiation factor IIA large chain; y	9e-04

>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C* Length = 79

 Score =  100 bits (250), Expect = 1e-26
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 312 DAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
               D+    L+++DDD L   +  E+   ++L+L  +DKVTRTK+RWKC+LKDG++ IN
Sbjct: 5   LLDTDEVGSELDDSDDDYLIS-EGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTIN 63

Query: 372 NKDILFNKATGEFDF 386
             D  F KA  E ++
Sbjct: 64  RNDYTFQKAQVEAEW 78

>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1 Length = 76

 Score = 96.6 bits (240), Expect = 4e-25
 Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
              ++EPLN  DD   ++    E  +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D
Sbjct: 7   GQVEEEPLNSEDDVSDEEGQ--ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRD 64

Query: 375 ILFNKATGEFDF 386
            +F+KA G+ ++
Sbjct: 65  YIFSKAIGDAEW 76

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 83.4 bits (204), Expect = 3e-18
 Identities = 42/243 (17%), Positives = 79/243 (32%), Gaps = 9/243 (3%)

Query: 144 SYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPA 203
           +               +  D+N         +      +  T +   +        + P 
Sbjct: 52  TTFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEENTGNEGLILPNINSNNNIP- 110

Query: 204 QYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDG 263
             H+G  NI          S       +      D  +    E+   +  +         
Sbjct: 111 --HSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTV 168

Query: 264 PIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLN 323
              D   +               ++   +        +    A++  ++   + DD    
Sbjct: 169 ENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDD---- 224

Query: 324 ENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGE 383
              DD+    +  E+   ++L+L  +DKVTRTK+RWKC+LKDG++ IN  D  F KA  E
Sbjct: 225 --SDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVE 282

Query: 384 FDF 386
            ++
Sbjct: 283 AEW 285

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 18/209 (8%), Positives = 47/209 (22%), Gaps = 22/209 (10%)

Query: 1   MATSATGMVYIRVIEDVIS--------------------KIWEMKMIQAGVI--IDRTSA 38
           M+ +    VY  ++E V++                     IW+ K+ +  V         
Sbjct: 1   MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVTTFSWDNQF 60

Query: 39  PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
            +    G       +L  P   + E+             L           +        
Sbjct: 61  NEGNINGVQNDLNFNLATPGVNSSEFNIKEENTGNEGLILPNINSNNNIPHSGETNINTN 120

Query: 99  PGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRP 158
                    A  +T      ++D  +            + N    + +            
Sbjct: 121 TVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVENIDDESEKKDD 180

Query: 159 PLSVDVNVAYVEGRDEADRGTSHQPLTQD 187
               +      + +++ ++        + 
Sbjct: 181 EEKEEDVEKTRKEKEQIEQVKLQAKKEKR 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
1rm1_C	286	Transcription initiation factor IIA large chain; y	100.0
1nvp_C	76	Transcription initiation factor IIA beta chain; tr	100.0
1nh2_C	79	Transcription initiation factor IIA large chain; t	100.0
1nvp_B	57	Transcription initiation factor IIA alpha chain; t	98.25
1nh2_B	53	Transcription initiation factor IIA large chain; t	98.0

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-39  Score=303.70  Aligned_cols=71  Identities=42%  Similarity=0.670  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          316 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       316 e~dEdpLNsdDDdd~dD~---Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      ..++|++|||+||+++|.   +++++..+.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus       212 ~~d~d~insdlDd~dd~~~~~~~~~~~~~~n~vlc~ydKV~R~knkWKc~lKdGi~~ingkdy~F~ka~GE~ew  285 (286)
T 1rm1_C          212 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW  285 (286)
T ss_dssp             ----------------CCBCCC---CSTTSCEEEEEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred             ccccccccCccCCcccccccccccccccccceEEEEEeeeeecccceeEEeeeeeEEECCceeeeeeccEEEee
Confidence            357889999986666543   33446689999999999999999999999999999999999999999999999

>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1

Probab=100.00  E-value=5.8e-36  Score=238.30  Aligned_cols=70  Identities=40%  Similarity=0.773  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCCCCCCcccccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          315 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       315 de~dEdpLNsdDDdd~dD~Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      ++++||+|||+||+++++.  .++++++|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus         7 ~~~~ed~lnsd~Dd~dd~~--~~~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkdy~F~ka~GE~eW   76 (76)
T 1nvp_C            7 GQVEEEPLNSEDDVSDEEG--QELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW   76 (76)
T ss_dssp             -------------------------CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred             ccccccccCCcCCCccccc--ccccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEEEEEeccceeecC
Confidence            4578999999998765544  346789999999999999999999999999999999999999999999999

>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*

Probab=100.00  E-value=2.5e-34  Score=230.28  Aligned_cols=71  Identities=42%  Similarity=0.670  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          316 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       316 e~dEdpLNsdDDdd~dD~---Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      +.++|+||||+|++++|.   +++++.++.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus         5 ~~d~d~insdlDd~dd~~~~~~~~~d~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkDy~F~ka~GE~eW   78 (79)
T 1nh2_C            5 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW   78 (79)
T ss_dssp             ----------------CCBC---------CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred             ccccccccCccCCccccccccccccccccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEEEEEecccEEEEE
Confidence            357889999987665554   33345589999999999999999999999999999999999999999999999

>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1

Probab=98.25  E-value=1.1e-07  Score=72.04  Aligned_cols=28  Identities=39%  Similarity=0.738  Sum_probs=22.1

Q ss_pred             ccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630            5 ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI   32 (386)
Q Consensus         5 ~~s~vyi~viedvi~k--------------------~we~km~q~g~i   32 (386)
                      +++.||.+||||||++                    +||.||+|.||+
T Consensus         8 ~v~~vY~~VIedVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~a~   55 (57)
T 1nvp_B            8 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV   55 (57)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC-----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            6799999999999998                    999999999986

>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*

Probab=98.00  E-value=6.8e-07  Score=66.77  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=22.7

Q ss_pred             ccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630            5 ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI   32 (386)
Q Consensus         5 ~~s~vyi~viedvi~k--------------------~we~km~q~g~i   32 (386)
                      .++.||.+||+|||++                    +||.||+|+||+
T Consensus         4 ~v~~vY~~VI~dVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~va   51 (53)
T 1nh2_B            4 EASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVT   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            4788999999999998                    999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1nvpc_	47	b.56.1.1 (C:) Large chain TOA1, C-terminal domain	3e-27
d1nh2c_	59	b.56.1.1 (C:) Large chain TOA1, C-terminal domain	9e-27

>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All beta proteins
fold: Transcription factor IIA (TFIIA), beta-barrel domain
superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
family: Transcription factor IIA (TFIIA), beta-barrel domain
domain: Large chain TOA1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 3e-27
 Identities = 21/47 (44%), Positives = 39/47 (82%)

Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           +T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct: 1   DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 47

>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 59

class: All beta proteins
fold: Transcription factor IIA (TFIIA), beta-barrel domain
superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
family: Transcription factor IIA (TFIIA), beta-barrel domain
domain: Large chain TOA1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.0 bits (247), Expect = 9e-27
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
           +  E+   ++L+L  +DKVTRTK+RWKC+LKDG++ IN  D  F KA  E ++
Sbjct: 6   EGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1nvpc_	47	Large chain TOA1, C-terminal domain {Human (Homo s	99.96
d1nh2c_	59	Large chain TOA1, C-terminal domain {Baker's yeast	99.96
d1nh2b_	46	Large chain TOA1, N-terminal domain {Baker's yeast	97.91
d1nvpb_	43	Large chain TOA1, N-terminal domain {Human (Homo s	97.6

>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Transcription factor IIA (TFIIA), beta-barrel domain
superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
family: Transcription factor IIA (TFIIA), beta-barrel domain
domain: Large chain TOA1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.6e-31  Score=191.76  Aligned_cols=47  Identities=45%  Similarity=0.943  Sum_probs=46.1

Q ss_pred             CCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       340 ~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      +++|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus         1 ~t~n~vlc~ydKV~R~KnKWKc~lKdGim~ingkdyvF~ka~gE~eW   47 (47)
T d1nvpc_           1 DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW   47 (47)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred             CcceEEEEEEEEEEeecceEEEEEEeeEEEECCcEEEEEeeeeeecC
Confidence            48999999999999999999999999999999999999999999999

>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Transcription factor IIA (TFIIA), beta-barrel domain
superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
family: Transcription factor IIA (TFIIA), beta-barrel domain
domain: Large chain TOA1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-30  Score=197.39  Aligned_cols=50  Identities=50%  Similarity=0.864  Sum_probs=44.8

Q ss_pred             cCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630          337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF  386 (386)
Q Consensus       337 Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw  386 (386)
                      ||..++|+||||||||+|+||||||+||||||+||||||||+||+|||||
T Consensus         9 ed~~~~n~vlc~yDKV~R~KnKWK~~LKdGim~ingkdy~F~ka~GE~eW   58 (59)
T d1nh2c_           9 EDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW   58 (59)
T ss_dssp             -----CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred             cCCCCCcEEEEEEEEEeeccceEEEEEeeeEEEECCeEEEEeeceEEEEe
Confidence            35568999999999999999999999999999999999999999999999

>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Transcription factor IIA (TFIIA), alpha-helical domain
superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
family: Transcription factor IIA (TFIIA), alpha-helical domain
domain: Large chain TOA1, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=5.3e-07  Score=64.53  Aligned_cols=25  Identities=28%  Similarity=0.680  Sum_probs=23.2

Q ss_pred             cccceEEeehHHHHHHH--------------------HHHHhhhh
Q 016630            4 SATGMVYIRVIEDVISK--------------------IWEMKMIQ   28 (386)
Q Consensus         4 s~~s~vyi~viedvi~k--------------------~we~km~q   28 (386)
                      +.+|.||.+||+|||++                    +||.||||
T Consensus         2 ~~v~~vY~~VI~dVI~~vR~dF~~~Gvde~vL~eLk~~We~Kl~Q   46 (46)
T d1nh2b_           2 AEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTE   46 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC
Confidence            45899999999999999                    99999998

>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Transcription factor IIA (TFIIA), alpha-helical domain
superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
family: Transcription factor IIA (TFIIA), alpha-helical domain
domain: Large chain TOA1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.7e-06  Score=59.45  Aligned_cols=23  Identities=43%  Similarity=0.811  Sum_probs=21.4

Q ss_pred             ccceEEeehHHHHHHH--------------------HHHHhhh
Q 016630            5 ATGMVYIRVIEDVISK--------------------IWEMKMI   27 (386)
Q Consensus         5 ~~s~vyi~viedvi~k--------------------~we~km~   27 (386)
                      +++.||.+||+|||++                    +||.|||
T Consensus         1 tV~kvY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~We~KL~   43 (43)
T d1nvpb_           1 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLM   43 (43)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence            4789999999999998                    9999997