Citrus Sinensis ID: 016637


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEEEEccccccHHHHHHHHccccccEEEEEEcccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccEEcccEEEEEHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHccccccccccEEEEEcccccccccccccccccHHHHHHHHccccccccccccccccEEEcccccccHHHHHHcHHHcccc
cccEEEEcccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccHHHHccccccccccccHHHHHHHHHHcHHccccccccccEEEEEEEcccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHcccccHHHHcccccccccccccccccccccHHHHccccEEEEEEHHHHHHHHHcccHHHHHHHHccccccccHccccEEEEEcccccccccEEEEEEcccccccccccccccccHHHHHHHHccccccEcccccccHEHHHHHccHHHHHHHHHHHHHHccc
mqarvvpleegkdpavvnktnqfraLPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSfvacpelpngldywinppsnlmhtmsdkelfwrasfvprvkeypfkrvpkIAFMFltkgplplgplwekffkghEGLYSIYVhslptfenkfpsssvfynrqipsqisewgkmsMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKkskhsfmgsfddpgpygrgrynanmapvvnitqwrkgsQWFEINRRLAVNIVedttyypkfaefcrppcyvdehyfptmlsiqmpnllanrsstwvdwsrggahpatfgradITEEFFKKvyggqhckynnqpstvcflfgrkfapsalqplmnisskvlgf
mqarvvpleegkdpavvnkTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPsalqplmnisskvlgf
MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
***************VVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQ************
**************************PLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTV*********************SNLMHTMSDKELFWRAS**************KIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
*****VP****KDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYGRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
147799468385 hypothetical protein VITISV_040196 [Viti 1.0 1.0 0.729 1e-176
224092232385 predicted protein [Populus trichocarpa] 1.0 1.0 0.758 1e-172
224142831385 predicted protein [Populus trichocarpa] 1.0 1.0 0.753 1e-171
356564083381 PREDICTED: uncharacterized protein LOC10 0.984 0.994 0.715 1e-166
356554062380 PREDICTED: uncharacterized protein LOC10 0.981 0.994 0.713 1e-164
255550858371 conserved hypothetical protein [Ricinus 0.890 0.924 0.781 1e-163
255549686385 conserved hypothetical protein [Ricinus 0.981 0.981 0.719 1e-162
224126229383 predicted protein [Populus trichocarpa] 0.979 0.984 0.689 1e-158
359476213358 PREDICTED: uncharacterized protein LOC10 0.929 1.0 0.670 1e-157
15239155386 Core-2/I-branching beta-1,6-N-acetylgluc 1.0 0.997 0.668 1e-156
>gi|147799468|emb|CAN70606.1| hypothetical protein VITISV_040196 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 281/385 (72%), Positives = 331/385 (85%)

Query: 1   MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSV 60
           MQ+R +  EEGKDPA  ++TNQ R LPLRL Q+FGLFLALC+AFS+IS+Y ++RFGV + 
Sbjct: 1   MQSRALSTEEGKDPANTSRTNQSRVLPLRLLQIFGLFLALCVAFSVISVYMIKRFGVSTT 60

Query: 61  VTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAF 120
           +T+ +SSF  C E   GLD WI PPS L+HTM+D EL WRASF P+VK+YPF+RVPK+AF
Sbjct: 61  LTSPQSSFQPCYEEVGGLDRWIKPPSTLLHTMNDTELLWRASFAPKVKKYPFQRVPKVAF 120

Query: 121 MFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKM 180
           MFLTKGPLPLGPLWE+F KGHEGLYSIY+HS P+F+  FP+SSVFY RQIPS+++EWG+M
Sbjct: 121 MFLTKGPLPLGPLWERFLKGHEGLYSIYIHSTPSFQANFPASSVFYRRQIPSKVAEWGRM 180

Query: 181 SMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYG 240
           SMCDAERRLLANALLDISNE F+L+SESCIPLYNF+LIYHYI KSK+SFMG+FDDPGPYG
Sbjct: 181 SMCDAERRLLANALLDISNERFVLLSESCIPLYNFTLIYHYIMKSKYSFMGAFDDPGPYG 240

Query: 241 RGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFP 300
           RGRYN NM P V+I+QWRKG+QWFE+NR+LAVNIVEDTT+Y KF EFC+P CYVDEHYFP
Sbjct: 241 RGRYNGNMKPEVSISQWRKGAQWFEVNRKLAVNIVEDTTFYKKFEEFCKPACYVDEHYFP 300

Query: 301 TMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVC 360
           TML+IQ  NL+ANRS TWVDWSRGGAHPATFG+ADITEEF  +V     C YNNQPS+ C
Sbjct: 301 TMLTIQSGNLIANRSITWVDWSRGGAHPATFGKADITEEFLHRVVSNHKCLYNNQPSSTC 360

Query: 361 FLFGRKFAPSALQPLMNISSKVLGF 385
           FLF RKFAPS L+PL+ ++ K LGF
Sbjct: 361 FLFARKFAPSTLEPLLQLAHKHLGF 385




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092232|ref|XP_002309520.1| predicted protein [Populus trichocarpa] gi|222855496|gb|EEE93043.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142831|ref|XP_002324745.1| predicted protein [Populus trichocarpa] gi|222866179|gb|EEF03310.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564083|ref|XP_003550286.1| PREDICTED: uncharacterized protein LOC100785919 [Glycine max] Back     alignment and taxonomy information
>gi|356554062|ref|XP_003545368.1| PREDICTED: uncharacterized protein LOC100819890 [Glycine max] Back     alignment and taxonomy information
>gi|255550858|ref|XP_002516477.1| conserved hypothetical protein [Ricinus communis] gi|223544297|gb|EEF45818.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255549686|ref|XP_002515894.1| conserved hypothetical protein [Ricinus communis] gi|223544799|gb|EEF46314.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224126229|ref|XP_002329622.1| predicted protein [Populus trichocarpa] gi|222870361|gb|EEF07492.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476213|ref|XP_002276627.2| PREDICTED: uncharacterized protein LOC100249300 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15239155|ref|NP_196734.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|7573387|emb|CAB87691.1| putative protein [Arabidopsis thaliana] gi|20260570|gb|AAM13183.1| putative protein [Arabidopsis thaliana] gi|31711872|gb|AAP68292.1| At5g11730 [Arabidopsis thaliana] gi|110742449|dbj|BAE99143.1| hypothetical protein [Arabidopsis thaliana] gi|332004332|gb|AED91715.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2181945386 AT5G11730 [Arabidopsis thalian 1.0 0.997 0.668 6e-151
TAIR|locus:2180552387 AT5G25970 [Arabidopsis thalian 0.994 0.989 0.657 7e-141
TAIR|locus:2094781383 AT3G21310 [Arabidopsis thalian 0.974 0.979 0.630 2.3e-133
TAIR|locus:2017592406 AT1G51770 [Arabidopsis thalian 0.974 0.923 0.612 4.6e-128
TAIR|locus:2012748412 AT1G10280 [Arabidopsis thalian 0.812 0.759 0.572 1.7e-100
TAIR|locus:2202324408 AT1G68390 [Arabidopsis thalian 0.812 0.767 0.522 7e-93
TAIR|locus:2181442411 AT5G16170 [Arabidopsis thalian 0.774 0.725 0.534 2.9e-87
TAIR|locus:2197354 651 AT1G10880 [Arabidopsis thalian 0.722 0.427 0.542 5.6e-84
TAIR|locus:2202329392 AT1G68380 [Arabidopsis thalian 0.932 0.915 0.454 9.1e-84
TAIR|locus:2027769418 AT1G73810 [Arabidopsis thalian 0.787 0.724 0.514 5e-83
TAIR|locus:2181945 AT5G11730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 258/386 (66%), Positives = 316/386 (81%)

Query:     1 MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSV 60
             MQ R+V LEEGK+  +  ++  ++  P +L  L GLFL   +   +IS+ +++  G+QSV
Sbjct:     1 MQNRIVQLEEGKENGITVRSGHYKGFPSKLLLLLGLFLTFSVTVFIISVSTIKYTGIQSV 60

Query:    61 VTTVKSSFVACPE-LPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIA 119
             VTTV SSFV C E  PN L  WI PP+ LMH MSD+EL WRASF PR KEYPFKRVPK+A
Sbjct:    61 VTTVTSSFVPCREGEPNSLSKWIQPPAVLMHNMSDEELLWRASFWPRRKEYPFKRVPKVA 120

Query:   120 FMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGK 179
             FMFLTKGPLPL  LWE+F KGH+GLYS+Y+H  P+F  KFP+SSVF+ RQIPSQ++EWG+
Sbjct:   121 FMFLTKGPLPLASLWERFLKGHKGLYSVYLHPHPSFTAKFPASSVFHRRQIPSQVAEWGR 180

Query:   180 MSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPY 239
             MSMCDAE+RLLANALLD+SNEWF+LVSESCIPLYNF+ IY Y+ +SKHSFMG+FDDPGP+
Sbjct:   181 MSMCDAEKRLLANALLDVSNEWFVLVSESCIPLYNFTTIYSYLSRSKHSFMGAFDDPGPF 240

Query:   240 GRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYF 299
             GRGRYN NM P V +T+WRKGSQWFE+NR LA  IV+DT YYPKF EFCRP CYVDEHYF
Sbjct:   241 GRGRYNGNMEPEVPLTKWRKGSQWFEVNRDLAATIVKDTLYYPKFKEFCRPACYVDEHYF 300

Query:   300 PTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTV 359
             PTML+I+ P +LANRS TWVDWSRGG HPATFGR+DITE FF K++ G++C YN + +++
Sbjct:   301 PTMLTIEKPTVLANRSLTWVDWSRGGPHPATFGRSDITENFFGKIFDGRNCSYNGRNTSM 360

Query:   360 CFLFGRKFAPSALQPLMNISSKVLGF 385
             C+LF RKFAPSAL+PL++I+ K+LGF
Sbjct:   361 CYLFARKFAPSALEPLLHIAPKILGF 386




GO:0005739 "mitochondrion" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2180552 AT5G25970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094781 AT3G21310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017592 AT1G51770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012748 AT1G10280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202324 AT1G68390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181442 AT5G16170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197354 AT1G10880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202329 AT1G68380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027769 AT1G73810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam02485242 pfam02485, Branch, Core-2/I-Branching enzyme 9e-96
>gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme Back     alignment and domain information
 Score =  285 bits (732), Expect = 9e-96
 Identities = 118/242 (48%), Positives = 146/242 (60%), Gaps = 16/242 (6%)

Query: 118 IAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFP----SSSVFYNRQIP- 171
           IAFMFL  KG LP  PLW +FF   + LY IYV +    E K      +S  F  R IP 
Sbjct: 1   IAFMFLVYKGDLPFLPLWLRFFYHPQNLYCIYVDAKSPSEFKERLRALASCFFNVRVIPK 60

Query: 172 SQISEWGKMSMCDAERRLLANALL-DISNEWFILVSESCIPLYNFSLIYHYIKKS--KHS 228
           S+   WG  SM DAERRLLAN LL D S ++F+L+SES IPL  F  +Y Y+      +S
Sbjct: 61  SEPVTWGGHSMVDAERRLLANLLLLDPSWDYFVLLSESDIPLKTFDELYRYLSSLNGNNS 120

Query: 229 FMGSFDDPGPYGRGRYNANMAPVVNIT----QWRKGSQWFEINRRLAVNIVEDTTYYPKF 284
           F+ SFDDPG  GRGRYN  M P + ++    +WRKGSQWF ++R  A  +V D  YYP F
Sbjct: 121 FVESFDDPGWKGRGRYNPRMLPEIKLSDLPLKWRKGSQWFVLSRAFAEYVVSDNLYYPLF 180

Query: 285 AEFCRPPCYVDEHYFPTMLSI--QMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFK 342
             +C   CY DEHYFPT+L +    PN   NR+ T+VDWSRGG HP T+   DI  E  K
Sbjct: 181 KYYC-NTCYPDEHYFPTLLGMPGHFPNTCVNRTLTYVDWSRGGCHPKTYRPCDIGPEDLK 239

Query: 343 KV 344
           ++
Sbjct: 240 RI 241


This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. Length = 242

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
PLN03183421 acetylglucosaminyltransferase family protein; Prov 100.0
PF02485244 Branch: Core-2/I-Branching enzyme; InterPro: IPR00 100.0
KOG0799439 consensus Branching enzyme [Carbohydrate transport 99.95
>PLN03183 acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information
Probab=100.00  E-value=7.1e-47  Score=383.16  Aligned_cols=245  Identities=18%  Similarity=0.252  Sum_probs=190.3

Q ss_pred             CCCCeEEEEEEe-cCC-CchHHHHHHHHhhcCCcEEEEEecCCccccc---------------CCCCCceeeeeecCccc
Q 016637          113 KRVPKIAFMFLT-KGP-LPLGPLWEKFFKGHEGLYSIYVHSLPTFENK---------------FPSSSVFYNRQIPSQIS  175 (385)
Q Consensus       113 ~~~~KIAfLiLa-~~p-~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~~---------------~~~~~VF~~r~Ips~~V  175 (385)
                      ..+||+||||++ +|+ .+++||+++++++++.   ||||+|++....               ...+||++..  ++..|
T Consensus        75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~---y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~--k~~~V  149 (421)
T PLN03183         75 DKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQ---YVVHLDLESPAEERLELASRVENDPMFSKVGNVYMIT--KANLV  149 (421)
T ss_pred             CCCCeEEEEEEecCCcHHHHHHHHHHhcCCCce---EEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEe--cceee
Confidence            357999999999 565 7999999999987654   799999864211               1245777521  23469


Q ss_pred             cCCcccHHHHHHHHHHHHHhC-CCCCEEEEecCCCcccCChHHH-HHHHHh-CCCCceeeccCCCCCCCCcccc------
Q 016637          176 EWGKMSMCDAERRLLANALLD-ISNEWFILVSESCIPLYNFSLI-YHYIKK-SKHSFMGSFDDPGPYGRGRYNA------  246 (385)
Q Consensus       176 ~WG~~SlV~Ael~LL~~AL~d-~~~dyfvLLSgsd~PL~s~~~I-~~~L~~-~~~sFIe~~~~~~~~~r~Ry~~------  246 (385)
                      .|||+|||+||+++|+.+|+. .+|||||||||+||||+++++| +.|+.. .+++||++..+.+.....|+..      
T Consensus       150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg  229 (421)
T PLN03183        150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG  229 (421)
T ss_pred             ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence            999999999999999999984 5899999999999999999995 566654 6789999875432211112110      


Q ss_pred             ----c----c----CcCcC-ccccccccceeEecHHHHHHhHhcccchhH-HHhhcCCCCCCCchhHHHHhhcc--CCcc
Q 016637          247 ----N----M----APVVN-ITQWRKGSQWFEINRRLAVNIVEDTTYYPK-FAEFCRPPCYVDEHYFPTMLSIQ--MPNL  310 (385)
Q Consensus       247 ----~----m----~p~i~-~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~-F~~~~~~~c~pDE~yf~TlL~n~--~~~~  310 (385)
                          .    +    ....| ..++++|||||+|||++|+||+...+..++ .+.|++.+++|||+||||+++|+  ++++
T Consensus       230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t  309 (421)
T PLN03183        230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKT  309 (421)
T ss_pred             eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccc
Confidence                0    0    01122 256899999999999999999986544443 55566767889999999999997  7899


Q ss_pred             cCCCcceEEeCCCCC-CCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhh
Q 016637          311 LANRSSTWVDWSRGG-AHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSK  381 (385)
Q Consensus       311 i~n~~lryidWs~g~-~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~  381 (385)
                      +.|+++|||||++++ .||++|+.+|+     ++|.++            .++|||||+.  ++++|+.+++
T Consensus       310 ~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S------------~~lFARKFd~--d~~vl~~Id~  362 (421)
T PLN03183        310 AVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS------------GAAFARKFRR--DDPVLDKIDK  362 (421)
T ss_pred             ccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC------------CCccccCCCC--ChHHHHHHHH
Confidence            999999999999775 49999999998     788876            4899999996  5788888865



>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 Back     alignment and structure
 Score =  104 bits (261), Expect = 2e-25
 Identities = 39/305 (12%), Positives = 81/305 (26%), Gaps = 44/305 (14%)

Query: 116 PKIAFMFLTKGPLPLGPLWEKFFKGHEGLYS----IYVH-----SLPTFENKFPSSSVFY 166
             IA+  +    + +    ++  +    +Y       +H                +S F 
Sbjct: 84  FPIAYSIVVHHKIEM---LDRLLRA---IYMPQNFYCIHVDRKAEESFLAAVQGIASCFD 137

Query: 167 NRQIPSQIS--EWGKMSMCDAERRLLANALLDISN-EWFILVSESCIPLYNFSLIYHYIK 223
           N  + SQ+    +   +   A+   + +     +N ++ I +     P+     I   +K
Sbjct: 138 NVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLK 197

Query: 224 KSK-HSFMGSFDDPGPYGRG-------------RYNANMAPVVNITQWRKGSQWFEINRR 269
            S   + + +   P                         AP    T    GS +F + R 
Sbjct: 198 CSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPLKTPLFSGSAYFVVTRE 257

Query: 270 LAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTW----------- 318
               ++E+     K  E+ +     DE  + T+  I         S+ +           
Sbjct: 258 YVGYVLENENI-QKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARF 316

Query: 319 VDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNI 378
           V W       +             +          +       LF  KF        +  
Sbjct: 317 VKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQC 376

Query: 379 SSKVL 383
             + L
Sbjct: 377 LDEHL 381


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 100.0
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-53  Score=428.60  Aligned_cols=267  Identities=16%  Similarity=0.191  Sum_probs=210.6

Q ss_pred             CCChHHHHHHhhcCCccc---CCC---CC---CCCeEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCcccc---
Q 016637           91 TMSDKELFWRASFVPRVK---EYP---FK---RVPKIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFEN---  157 (385)
Q Consensus        91 ~~~d~el~~~as~~~~~~---~~p---~~---~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~---  157 (385)
                      .++|++++.....|+.+.   .|.   .+   ..+||||||++ ++..++++|++.++++.   +.||||+|++...   
T Consensus        50 ~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~ly~p~---n~y~IHvD~ks~~~~~  126 (391)
T 2gak_A           50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMPQ---NFYCIHVDRKAEESFL  126 (391)
T ss_dssp             CCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHHCCTT---SEEEEEECTTSCHHHH
T ss_pred             ccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHHhCCC---CeEEEEEeCCCCHHHH
Confidence            568888888766676532   332   22   25799999999 66778899998887653   2378999986321   


Q ss_pred             -cC-----CCCCceeeeee-cCccccCCcccHHHHHHHHHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHHh-CCCC
Q 016637          158 -KF-----PSSSVFYNRQI-PSQISEWGKMSMCDAERRLLANALLDI-SNEWFILVSESCIPLYNFSLIYHYIKK-SKHS  228 (385)
Q Consensus       158 -~~-----~~~~VF~~r~I-ps~~V~WG~~SlV~Ael~LL~~AL~d~-~~dyfvLLSgsd~PL~s~~~I~~~L~~-~~~s  228 (385)
                       .+     ..++|++   + ++..|.|||+|||+||++||++||++. +|+|||||||+|+||+|+++|++||+. +++|
T Consensus       127 ~~~~~~~~~f~NV~v---~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~n  203 (391)
T 2gak_A          127 AAVQGIASCFDNVFV---ASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGEN  203 (391)
T ss_dssp             HHHHHHHHTCTTEEE---CSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhcCCCEEE---eccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCc
Confidence             11     1345554   2 367999999999999999999999965 899999999999999999999999986 6899


Q ss_pred             ceeeccCCCC-CCCCcccc--------------ccCcCcCccccccccceeEecHHHHHHhHhcccchhHHHhhcCCCCC
Q 016637          229 FMGSFDDPGP-YGRGRYNA--------------NMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCY  293 (385)
Q Consensus       229 FIe~~~~~~~-~~r~Ry~~--------------~m~p~i~~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~~c~  293 (385)
                      ||++.++++. ..|.+|.+              ++.|.  ..+|++|||||+|+|++|++|++|.. .++|.+||+++|+
T Consensus       204 FIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~  280 (391)
T 2gak_A          204 NLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYS  280 (391)
T ss_dssp             BCCBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSS
T ss_pred             eeeccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcC
Confidence            9999987653 12222221              12232  35799999999999999999999865 6789999999999


Q ss_pred             CCchhHHHHhhcc-CCccc----------CCCcceEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHh
Q 016637          294 VDEHYFPTMLSIQ-MPNLL----------ANRSSTWVDWS-------RGGAHPA----------TFGRADITEEFFKKVY  345 (385)
Q Consensus       294 pDE~yf~TlL~n~-~~~~i----------~n~~lryidWs-------~g~~hP~----------~~~~~D~~~~~l~~l~  345 (385)
                      ||||||||++.+. .++.+          +|+++|||+|+       +|++||.          +|+.+|+     +.|+
T Consensus       281 pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~  355 (391)
T 2gak_A          281 PDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWML  355 (391)
T ss_dssp             GGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHT
T ss_pred             CchhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHH
Confidence            9999999999986 45433          47899999997       3556887          7888887     7787


Q ss_pred             cCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhh
Q 016637          346 GGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVL  383 (385)
Q Consensus       346 ~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~  383 (385)
                      ++            ++||||||++++++++++.+++.+
T Consensus       356 ~s------------~~lFARKF~~~~d~~~l~~l~~~l  381 (391)
T 2gak_A          356 RQ------------HHLFANKFDMDVDPFAIQCLDEHL  381 (391)
T ss_dssp             TS------------CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred             hC------------CCceEEccCCccCHHHHHHHHHHH
Confidence            64            699999999999999999998764




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00