Citrus Sinensis ID: 016637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| 147799468 | 385 | hypothetical protein VITISV_040196 [Viti | 1.0 | 1.0 | 0.729 | 1e-176 | |
| 224092232 | 385 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.758 | 1e-172 | |
| 224142831 | 385 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.753 | 1e-171 | |
| 356564083 | 381 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.994 | 0.715 | 1e-166 | |
| 356554062 | 380 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.994 | 0.713 | 1e-164 | |
| 255550858 | 371 | conserved hypothetical protein [Ricinus | 0.890 | 0.924 | 0.781 | 1e-163 | |
| 255549686 | 385 | conserved hypothetical protein [Ricinus | 0.981 | 0.981 | 0.719 | 1e-162 | |
| 224126229 | 383 | predicted protein [Populus trichocarpa] | 0.979 | 0.984 | 0.689 | 1e-158 | |
| 359476213 | 358 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 1.0 | 0.670 | 1e-157 | |
| 15239155 | 386 | Core-2/I-branching beta-1,6-N-acetylgluc | 1.0 | 0.997 | 0.668 | 1e-156 |
| >gi|147799468|emb|CAN70606.1| hypothetical protein VITISV_040196 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 281/385 (72%), Positives = 331/385 (85%)
Query: 1 MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSV 60
MQ+R + EEGKDPA ++TNQ R LPLRL Q+FGLFLALC+AFS+IS+Y ++RFGV +
Sbjct: 1 MQSRALSTEEGKDPANTSRTNQSRVLPLRLLQIFGLFLALCVAFSVISVYMIKRFGVSTT 60
Query: 61 VTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIAF 120
+T+ +SSF C E GLD WI PPS L+HTM+D EL WRASF P+VK+YPF+RVPK+AF
Sbjct: 61 LTSPQSSFQPCYEEVGGLDRWIKPPSTLLHTMNDTELLWRASFAPKVKKYPFQRVPKVAF 120
Query: 121 MFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKM 180
MFLTKGPLPLGPLWE+F KGHEGLYSIY+HS P+F+ FP+SSVFY RQIPS+++EWG+M
Sbjct: 121 MFLTKGPLPLGPLWERFLKGHEGLYSIYIHSTPSFQANFPASSVFYRRQIPSKVAEWGRM 180
Query: 181 SMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPYG 240
SMCDAERRLLANALLDISNE F+L+SESCIPLYNF+LIYHYI KSK+SFMG+FDDPGPYG
Sbjct: 181 SMCDAERRLLANALLDISNERFVLLSESCIPLYNFTLIYHYIMKSKYSFMGAFDDPGPYG 240
Query: 241 RGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFP 300
RGRYN NM P V+I+QWRKG+QWFE+NR+LAVNIVEDTT+Y KF EFC+P CYVDEHYFP
Sbjct: 241 RGRYNGNMKPEVSISQWRKGAQWFEVNRKLAVNIVEDTTFYKKFEEFCKPACYVDEHYFP 300
Query: 301 TMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVC 360
TML+IQ NL+ANRS TWVDWSRGGAHPATFG+ADITEEF +V C YNNQPS+ C
Sbjct: 301 TMLTIQSGNLIANRSITWVDWSRGGAHPATFGKADITEEFLHRVVSNHKCLYNNQPSSTC 360
Query: 361 FLFGRKFAPSALQPLMNISSKVLGF 385
FLF RKFAPS L+PL+ ++ K LGF
Sbjct: 361 FLFARKFAPSTLEPLLQLAHKHLGF 385
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092232|ref|XP_002309520.1| predicted protein [Populus trichocarpa] gi|222855496|gb|EEE93043.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224142831|ref|XP_002324745.1| predicted protein [Populus trichocarpa] gi|222866179|gb|EEF03310.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356564083|ref|XP_003550286.1| PREDICTED: uncharacterized protein LOC100785919 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356554062|ref|XP_003545368.1| PREDICTED: uncharacterized protein LOC100819890 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255550858|ref|XP_002516477.1| conserved hypothetical protein [Ricinus communis] gi|223544297|gb|EEF45818.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255549686|ref|XP_002515894.1| conserved hypothetical protein [Ricinus communis] gi|223544799|gb|EEF46314.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224126229|ref|XP_002329622.1| predicted protein [Populus trichocarpa] gi|222870361|gb|EEF07492.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359476213|ref|XP_002276627.2| PREDICTED: uncharacterized protein LOC100249300 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15239155|ref|NP_196734.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|7573387|emb|CAB87691.1| putative protein [Arabidopsis thaliana] gi|20260570|gb|AAM13183.1| putative protein [Arabidopsis thaliana] gi|31711872|gb|AAP68292.1| At5g11730 [Arabidopsis thaliana] gi|110742449|dbj|BAE99143.1| hypothetical protein [Arabidopsis thaliana] gi|332004332|gb|AED91715.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| TAIR|locus:2181945 | 386 | AT5G11730 [Arabidopsis thalian | 1.0 | 0.997 | 0.668 | 6e-151 | |
| TAIR|locus:2180552 | 387 | AT5G25970 [Arabidopsis thalian | 0.994 | 0.989 | 0.657 | 7e-141 | |
| TAIR|locus:2094781 | 383 | AT3G21310 [Arabidopsis thalian | 0.974 | 0.979 | 0.630 | 2.3e-133 | |
| TAIR|locus:2017592 | 406 | AT1G51770 [Arabidopsis thalian | 0.974 | 0.923 | 0.612 | 4.6e-128 | |
| TAIR|locus:2012748 | 412 | AT1G10280 [Arabidopsis thalian | 0.812 | 0.759 | 0.572 | 1.7e-100 | |
| TAIR|locus:2202324 | 408 | AT1G68390 [Arabidopsis thalian | 0.812 | 0.767 | 0.522 | 7e-93 | |
| TAIR|locus:2181442 | 411 | AT5G16170 [Arabidopsis thalian | 0.774 | 0.725 | 0.534 | 2.9e-87 | |
| TAIR|locus:2197354 | 651 | AT1G10880 [Arabidopsis thalian | 0.722 | 0.427 | 0.542 | 5.6e-84 | |
| TAIR|locus:2202329 | 392 | AT1G68380 [Arabidopsis thalian | 0.932 | 0.915 | 0.454 | 9.1e-84 | |
| TAIR|locus:2027769 | 418 | AT1G73810 [Arabidopsis thalian | 0.787 | 0.724 | 0.514 | 5e-83 |
| TAIR|locus:2181945 AT5G11730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 258/386 (66%), Positives = 316/386 (81%)
Query: 1 MQARVVPLEEGKDPAVVNKTNQFRALPLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSV 60
MQ R+V LEEGK+ + ++ ++ P +L L GLFL + +IS+ +++ G+QSV
Sbjct: 1 MQNRIVQLEEGKENGITVRSGHYKGFPSKLLLLLGLFLTFSVTVFIISVSTIKYTGIQSV 60
Query: 61 VTTVKSSFVACPE-LPNGLDYWINPPSNLMHTMSDKELFWRASFVPRVKEYPFKRVPKIA 119
VTTV SSFV C E PN L WI PP+ LMH MSD+EL WRASF PR KEYPFKRVPK+A
Sbjct: 61 VTTVTSSFVPCREGEPNSLSKWIQPPAVLMHNMSDEELLWRASFWPRRKEYPFKRVPKVA 120
Query: 120 FMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGK 179
FMFLTKGPLPL LWE+F KGH+GLYS+Y+H P+F KFP+SSVF+ RQIPSQ++EWG+
Sbjct: 121 FMFLTKGPLPLASLWERFLKGHKGLYSVYLHPHPSFTAKFPASSVFHRRQIPSQVAEWGR 180
Query: 180 MSMCDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSKHSFMGSFDDPGPY 239
MSMCDAE+RLLANALLD+SNEWF+LVSESCIPLYNF+ IY Y+ +SKHSFMG+FDDPGP+
Sbjct: 181 MSMCDAEKRLLANALLDVSNEWFVLVSESCIPLYNFTTIYSYLSRSKHSFMGAFDDPGPF 240
Query: 240 GRGRYNANMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYF 299
GRGRYN NM P V +T+WRKGSQWFE+NR LA IV+DT YYPKF EFCRP CYVDEHYF
Sbjct: 241 GRGRYNGNMEPEVPLTKWRKGSQWFEVNRDLAATIVKDTLYYPKFKEFCRPACYVDEHYF 300
Query: 300 PTMLSIQMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTV 359
PTML+I+ P +LANRS TWVDWSRGG HPATFGR+DITE FF K++ G++C YN + +++
Sbjct: 301 PTMLTIEKPTVLANRSLTWVDWSRGGPHPATFGRSDITENFFGKIFDGRNCSYNGRNTSM 360
Query: 360 CFLFGRKFAPSALQPLMNISSKVLGF 385
C+LF RKFAPSAL+PL++I+ K+LGF
Sbjct: 361 CYLFARKFAPSALEPLLHIAPKILGF 386
|
|
| TAIR|locus:2180552 AT5G25970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2094781 AT3G21310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2017592 AT1G51770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2012748 AT1G10280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2202324 AT1G68390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181442 AT5G16170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2197354 AT1G10880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2202329 AT1G68380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2027769 AT1G73810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 385 | |||
| pfam02485 | 242 | pfam02485, Branch, Core-2/I-Branching enzyme | 9e-96 |
| >gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 9e-96
Identities = 118/242 (48%), Positives = 146/242 (60%), Gaps = 16/242 (6%)
Query: 118 IAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENKFP----SSSVFYNRQIP- 171
IAFMFL KG LP PLW +FF + LY IYV + E K +S F R IP
Sbjct: 1 IAFMFLVYKGDLPFLPLWLRFFYHPQNLYCIYVDAKSPSEFKERLRALASCFFNVRVIPK 60
Query: 172 SQISEWGKMSMCDAERRLLANALL-DISNEWFILVSESCIPLYNFSLIYHYIKKS--KHS 228
S+ WG SM DAERRLLAN LL D S ++F+L+SES IPL F +Y Y+ +S
Sbjct: 61 SEPVTWGGHSMVDAERRLLANLLLLDPSWDYFVLLSESDIPLKTFDELYRYLSSLNGNNS 120
Query: 229 FMGSFDDPGPYGRGRYNANMAPVVNIT----QWRKGSQWFEINRRLAVNIVEDTTYYPKF 284
F+ SFDDPG GRGRYN M P + ++ +WRKGSQWF ++R A +V D YYP F
Sbjct: 121 FVESFDDPGWKGRGRYNPRMLPEIKLSDLPLKWRKGSQWFVLSRAFAEYVVSDNLYYPLF 180
Query: 285 AEFCRPPCYVDEHYFPTMLSI--QMPNLLANRSSTWVDWSRGGAHPATFGRADITEEFFK 342
+C CY DEHYFPT+L + PN NR+ T+VDWSRGG HP T+ DI E K
Sbjct: 181 KYYC-NTCYPDEHYFPTLLGMPGHFPNTCVNRTLTYVDWSRGGCHPKTYRPCDIGPEDLK 239
Query: 343 KV 344
++
Sbjct: 240 RI 241
|
This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. Length = 242 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 385 | |||
| PLN03183 | 421 | acetylglucosaminyltransferase family protein; Prov | 100.0 | |
| PF02485 | 244 | Branch: Core-2/I-Branching enzyme; InterPro: IPR00 | 100.0 | |
| KOG0799 | 439 | consensus Branching enzyme [Carbohydrate transport | 99.95 |
| >PLN03183 acetylglucosaminyltransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=383.16 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=190.3
Q ss_pred CCCCeEEEEEEe-cCC-CchHHHHHHHHhhcCCcEEEEEecCCccccc---------------CCCCCceeeeeecCccc
Q 016637 113 KRVPKIAFMFLT-KGP-LPLGPLWEKFFKGHEGLYSIYVHSLPTFENK---------------FPSSSVFYNRQIPSQIS 175 (385)
Q Consensus 113 ~~~~KIAfLiLa-~~p-~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~~---------------~~~~~VF~~r~Ips~~V 175 (385)
..+||+||||++ +|+ .+++||+++++++++. ||||+|++.... ...+||++.. ++..|
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~---y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~--k~~~V 149 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQ---YVVHLDLESPAEERLELASRVENDPMFSKVGNVYMIT--KANLV 149 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHHhcCCCce---EEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEe--cceee
Confidence 357999999999 565 7999999999987654 799999864211 1245777521 23469
Q ss_pred cCCcccHHHHHHHHHHHHHhC-CCCCEEEEecCCCcccCChHHH-HHHHHh-CCCCceeeccCCCCCCCCcccc------
Q 016637 176 EWGKMSMCDAERRLLANALLD-ISNEWFILVSESCIPLYNFSLI-YHYIKK-SKHSFMGSFDDPGPYGRGRYNA------ 246 (385)
Q Consensus 176 ~WG~~SlV~Ael~LL~~AL~d-~~~dyfvLLSgsd~PL~s~~~I-~~~L~~-~~~sFIe~~~~~~~~~r~Ry~~------ 246 (385)
.|||+|||+||+++|+.+|+. .+|||||||||+||||+++++| +.|+.. .+++||++..+.+.....|+..
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 999999999999999999984 5899999999999999999995 566654 6789999875432211112110
Q ss_pred ----c----c----CcCcC-ccccccccceeEecHHHHHHhHhcccchhH-HHhhcCCCCCCCchhHHHHhhcc--CCcc
Q 016637 247 ----N----M----APVVN-ITQWRKGSQWFEINRRLAVNIVEDTTYYPK-FAEFCRPPCYVDEHYFPTMLSIQ--MPNL 310 (385)
Q Consensus 247 ----~----m----~p~i~-~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~-F~~~~~~~c~pDE~yf~TlL~n~--~~~~ 310 (385)
. + ....| ..++++|||||+|||++|+||+...+..++ .+.|++.+++|||+||||+++|+ ++++
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t 309 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKT 309 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccc
Confidence 0 0 01122 256899999999999999999986544443 55566767889999999999997 7899
Q ss_pred cCCCcceEEeCCCCC-CCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhh
Q 016637 311 LANRSSTWVDWSRGG-AHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSK 381 (385)
Q Consensus 311 i~n~~lryidWs~g~-~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~ 381 (385)
+.|+++|||||++++ .||++|+.+|+ ++|.++ .++|||||+. ++++|+.+++
T Consensus 310 ~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S------------~~lFARKFd~--d~~vl~~Id~ 362 (421)
T PLN03183 310 AVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS------------GAAFARKFRR--DDPVLDKIDK 362 (421)
T ss_pred ccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC------------CCccccCCCC--ChHHHHHHHH
Confidence 999999999999775 49999999998 788876 4899999996 5788888865
|
|
| >PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 385 | |||
| 2gak_A | 391 | Beta-1,6-N-acetylglucosaminyltransferase; glycopro | 2e-25 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-04 |
| >2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 39/305 (12%), Positives = 81/305 (26%), Gaps = 44/305 (14%)
Query: 116 PKIAFMFLTKGPLPLGPLWEKFFKGHEGLYS----IYVH-----SLPTFENKFPSSSVFY 166
IA+ + + + ++ + +Y +H +S F
Sbjct: 84 FPIAYSIVVHHKIEM---LDRLLRA---IYMPQNFYCIHVDRKAEESFLAAVQGIASCFD 137
Query: 167 NRQIPSQIS--EWGKMSMCDAERRLLANALLDISN-EWFILVSESCIPLYNFSLIYHYIK 223
N + SQ+ + + A+ + + +N ++ I + P+ I +K
Sbjct: 138 NVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLK 197
Query: 224 KSK-HSFMGSFDDPGPYGRG-------------RYNANMAPVVNITQWRKGSQWFEINRR 269
S + + + P AP T GS +F + R
Sbjct: 198 CSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPLKTPLFSGSAYFVVTRE 257
Query: 270 LAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRSSTW----------- 318
++E+ K E+ + DE + T+ I S+ +
Sbjct: 258 YVGYVLENENI-QKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARF 316
Query: 319 VDWSRGGAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNI 378
V W + + + LF KF +
Sbjct: 317 VKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQC 376
Query: 379 SSKVL 383
+ L
Sbjct: 377 LDEHL 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 385 | |||
| 2gak_A | 391 | Beta-1,6-N-acetylglucosaminyltransferase; glycopro | 100.0 |
| >2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=428.60 Aligned_cols=267 Identities=16% Similarity=0.191 Sum_probs=210.6
Q ss_pred CCChHHHHHHhhcCCccc---CCC---CC---CCCeEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCcccc---
Q 016637 91 TMSDKELFWRASFVPRVK---EYP---FK---RVPKIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFEN--- 157 (385)
Q Consensus 91 ~~~d~el~~~as~~~~~~---~~p---~~---~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~--- 157 (385)
.++|++++.....|+.+. .|. .+ ..+||||||++ ++..++++|++.++++. +.||||+|++...
T Consensus 50 ~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~ly~p~---n~y~IHvD~ks~~~~~ 126 (391)
T 2gak_A 50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMPQ---NFYCIHVDRKAEESFL 126 (391)
T ss_dssp CCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHHCCTT---SEEEEEECTTSCHHHH
T ss_pred ccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHHhCCC---CeEEEEEeCCCCHHHH
Confidence 568888888766676532 332 22 25799999999 66778899998887653 2378999986321
Q ss_pred -cC-----CCCCceeeeee-cCccccCCcccHHHHHHHHHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHHh-CCCC
Q 016637 158 -KF-----PSSSVFYNRQI-PSQISEWGKMSMCDAERRLLANALLDI-SNEWFILVSESCIPLYNFSLIYHYIKK-SKHS 228 (385)
Q Consensus 158 -~~-----~~~~VF~~r~I-ps~~V~WG~~SlV~Ael~LL~~AL~d~-~~dyfvLLSgsd~PL~s~~~I~~~L~~-~~~s 228 (385)
.+ ..++|++ + ++..|.|||+|||+||++||++||++. +|+|||||||+|+||+|+++|++||+. +++|
T Consensus 127 ~~~~~~~~~f~NV~v---~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~n 203 (391)
T 2gak_A 127 AAVQGIASCFDNVFV---ASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGEN 203 (391)
T ss_dssp HHHHHHHHTCTTEEE---CSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCEEE---eccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCc
Confidence 11 1345554 2 367999999999999999999999965 899999999999999999999999986 6899
Q ss_pred ceeeccCCCC-CCCCcccc--------------ccCcCcCccccccccceeEecHHHHHHhHhcccchhHHHhhcCCCCC
Q 016637 229 FMGSFDDPGP-YGRGRYNA--------------NMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCY 293 (385)
Q Consensus 229 FIe~~~~~~~-~~r~Ry~~--------------~m~p~i~~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~~c~ 293 (385)
||++.++++. ..|.+|.+ ++.|. ..+|++|||||+|+|++|++|++|.. .++|.+||+++|+
T Consensus 204 FIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~ 280 (391)
T 2gak_A 204 NLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYS 280 (391)
T ss_dssp BCCBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSS
T ss_pred eeeccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcC
Confidence 9999987653 12222221 12232 35799999999999999999999865 6789999999999
Q ss_pred CCchhHHHHhhcc-CCccc----------CCCcceEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHh
Q 016637 294 VDEHYFPTMLSIQ-MPNLL----------ANRSSTWVDWS-------RGGAHPA----------TFGRADITEEFFKKVY 345 (385)
Q Consensus 294 pDE~yf~TlL~n~-~~~~i----------~n~~lryidWs-------~g~~hP~----------~~~~~D~~~~~l~~l~ 345 (385)
||||||||++.+. .++.+ +|+++|||+|+ +|++||. +|+.+|+ +.|+
T Consensus 281 pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~ 355 (391)
T 2gak_A 281 PDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWML 355 (391)
T ss_dssp GGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHT
T ss_pred CchhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHH
Confidence 9999999999986 45433 47899999997 3556887 7888887 7787
Q ss_pred cCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhh
Q 016637 346 GGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVL 383 (385)
Q Consensus 346 ~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~ 383 (385)
++ ++||||||++++++++++.+++.+
T Consensus 356 ~s------------~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 356 RQ------------HHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp TS------------CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred hC------------CCceEEccCCccCHHHHHHHHHHH
Confidence 64 699999999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00