Citrus Sinensis ID: 016639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV
Secondary Structure (PSIPRED)
cccccHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccccEcHHccccEEcccccccccccccccccEEHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrtvpksyykhfsnseqidfqkqsslitlpqprahpfvpkdhpffvrtdltahemgppktvrTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLqgvdlsgivkcvpgesslkdnplIQSLERLkqldlnskdkfsdeDLNEMMGLFDKLIELcggnegsvNAAVATKNGGVELVCSICYkmrcgskrvLDSCLKTMALLVHDvqstetfrtgggpKLLVNILidgnedpeilNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLltpdddqvvASQVYGYARRFAKIGIARALVHSLhaglsspslISASIALKAVAVNDEICKSVAENGGIDALLRCIddsglqgnKTVARICCSLLSKV
Flexible Loop (DISEMBL)
MRTVPKSYYKHfsnseqidfqKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPgesslkdnplIQSLErlkqldlnskdkfsdEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVqstetfrtgggpKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDdsglqgnkTVARICCSLLSKV
Low Complexity Region (SEG)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMelkidelileilSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHaglsspslisasialkavaVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV
Disordered region (IsUnstruct)
*************************************V*KDHPFFVRTDLT**************************************DAIQTLSLQGVDLSGIVKCVP*********************************NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL***
Disordered Region (DISOPRED)
******S*YKHFSNSE*************************************************QEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC************IQSLERLKQLD*************EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI*********TVARICCSLLSKV
Disordered Region (DISEMBL)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV
Disordered Region (DISPRO)
***VPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVPKSYYKHFSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q6NXE6	501	Armadillo repeat-containi	yes	no	0.755	0.580	0.230	8e-13
Q5RD03	501	Armadillo repeat-containi	yes	no	0.740	0.568	0.231	1e-12
Q8BNU0	468	Armadillo repeat-containi	yes	no	0.753	0.619	0.238	2e-09
Q7K486	464	Armadillo repeat-containi	yes	no	0.753	0.625	0.212	8e-08

>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 140/313 (44%), Gaps = 22/313 (7%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPL 120
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+     P 
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPEEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              L+ L  L    ++  +     E+     +  + C  ++      +A + G   ++ +
Sbjct: 89  HDILQMLSDL----QESVASSRPQEVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPIIFT 142

Query: 181 ICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGF 240
                  G + +L   L  +++L              G +LLV  L    ++ ++  SG 
Sbjct: 143 AWKLATAGDQGLLLQSLNALSVL---TDGQPDLLDAQGLQLLVATLTQNADEADLTCSGI 199

Query: 241 AVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVVA 298
             V  +   +E  ++  ++  +  L+   ++      D ++    A+RV+   DD +V  
Sbjct: 200 RCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHTDVVREACWALRVMTFDDDIRV-- 257

Query: 299 SQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVAE 352
              +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E C+ V +
Sbjct: 258 --PFGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEFCQEVVD 315

Query: 353 NGGIDALLRCIDD 365
            GG+  L+  + D
Sbjct: 316 LGGLSILVSLLAD 328

Homo sapiens (taxid: 9606)

>sp|Q5RD03|ARMC6_PONAB Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 150/319 (47%), Gaps = 34/319 (10%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS----LKD 117
           + I+QE FD  V+EN+E+  M P EA+++A++    QGVDLS IVK  P  S+       
Sbjct: 29  KRIAQETFDAAVRENIEEFAMGPDEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88

Query: 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL 177
           + ++Q+L  L++   +S+ +       E+     +  + C  ++      +A + G   +
Sbjct: 89  HDILQTLSDLQESVASSRPQ-------EVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPI 139

Query: 178 VCSICYKMRCGSKRVLDSCLKTMALLVH---DVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           + +       G + +L   L  +++L     D+  T+      G +LLV  L    ++ +
Sbjct: 140 IFTAWKLATAGDQGLLLQSLNALSVLTDGQPDLLDTQ------GLQLLVATLTRNADEAD 193

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD 292
           +  SG   V  +   +E  ++  ++  +  L+   ++   +  D ++    A+RV+   D
Sbjct: 194 LTCSGIRCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHADVVREACCALRVMTFDD 253

Query: 293 DDQVVASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEI 346
           D +V     +G+A   AK+ +      + L+ +  A L +P ++S     L  +A+ +E 
Sbjct: 254 DIRV----PFGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEF 309

Query: 347 CKSVAENGGIDALLRCIDD 365
           C+ V + GG+  L+  + D
Sbjct: 310 CQEVVDLGGLSILVSLLAD 328

Pongo abelii (taxid: 9601)

>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 142/314 (45%), Gaps = 24/314 (7%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
           + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct: 4   KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query: 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
               L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct: 63  THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query: 180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
           +  +++   S + L         ++ D Q         G  LLV  L     + E+   G
Sbjct: 117 A-AWQLAATSNQGLLLQALNALAVLTDGQP--DLLDAQGLHLLVATLAQNAANTELTCCG 173

Query: 240 FAVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
              V      +E  ++  ++  +  L+   +++  Q  D ++    A+RV+   DD +V 
Sbjct: 174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRV- 232

Query: 298 ASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVA 351
               +G+A   AK+ +      + L+ +  A   +P ++S   + L  +AV +E C+ V 
Sbjct: 233 ---PFGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVI 289

Query: 352 ENGGIDALLRCIDD 365
           + GG+  L+  + D
Sbjct: 290 DLGGLGILVTLLAD 303

Mus musculus (taxid: 10090)

>sp|Q7K486|ARMC6_DROME Armadillo repeat-containing protein 6 homolog OS=Drosophila melanogaster GN=CG5721 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 62  RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
           + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +          + 
Sbjct: 3   KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVIN 62

Query: 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKNGGVELVCS 180
           ++++++K+           + L E   L ++L  L    + S+ +  +A KNG  + + +
Sbjct: 63  ETVDKIKE--------HIGQKLEETTELLEQLATLDAECKKSLAHRVLAGKNGAHDALIT 114

Query: 181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct: 115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                +  +   +E+ +++ M     +L+  +L + ++  ++ L    R L+  DD +V 
Sbjct: 172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
               + +AR+ A   +   LV  L A      L    + +  +AV  E+C ++ E GG+ 
Sbjct: 232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query: 358 ALLRCI 363
           ++   +
Sbjct: 291 SVFEIM 296

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
224105507	453	predicted protein [Populus trichocarpa]	0.844	0.717	0.707	1e-128
224123442	461	predicted protein [Populus trichocarpa]	0.844	0.704	0.701	1e-128
255561675	719	Armadillo repeat-containing protein, put	0.883	0.472	0.680	1e-125
225428709	460	PREDICTED: armadillo repeat-containing p	0.838	0.702	0.688	1e-122
147858319	449	hypothetical protein VITISV_035941 [Viti	0.841	0.721	0.681	1e-121
449517545	465	PREDICTED: armadillo repeat-containing p	0.859	0.711	0.688	1e-121
449438432	465	PREDICTED: armadillo repeat-containing p	0.859	0.711	0.688	1e-121
217074674	459	unknown [Medicago truncatula] gi|3885189	0.828	0.694	0.633	1e-114
356521205	463	PREDICTED: armadillo repeat-containing p	0.831	0.691	0.604	1e-105
18418335	464	armadillo/beta-catenin-like repeat-conta	0.841	0.698	0.631	1e-104

>gi|224105507|ref|XP_002313836.1| predicted protein [Populus trichocarpa] gi|222850244|gb|EEE87791.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/332 (70%), Positives = 280/332 (84%), Gaps = 7/332 (2%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K  RTISQEAFDE+VKEN+EDLGM+PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNARTISQEAFDELVKENIEDLGMDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERL++L       F +   NEM GLFD+L  L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLEELG------FDNNGSNEMAGLFDQLAGLFSGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           GVELVCSIC  +  GS++VL S L+T+ALL+HDVQSTETFR+  GPK++V+IL DG+E  
Sbjct: 115 GVELVCSICSNIPIGSEKVLVSALETLALLIHDVQSTETFRSSDGPKMVVDILKDGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           +ILNSGFAVVAA+AT NEVVKE +MELKIDELILE L+RQ   +I+ LYD+IRVLLTPDD
Sbjct: 175 DILNSGFAVVAAAATSNEVVKELFMELKIDELILEALNRQSKGNIRGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL AGL+SPSL+SASIALKAVAVNDEICKS+ E+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRAGLTSPSLVSASIALKAVAVNDEICKSITES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           GGIDA+L+ IDDSG QGNK VA+ CCSLLSK+
Sbjct: 295 GGIDAILKFIDDSGEQGNKIVAKTCCSLLSKL 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123442|ref|XP_002330316.1| predicted protein [Populus trichocarpa] gi|222871351|gb|EEF08482.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/332 (70%), Positives = 280/332 (84%), Gaps = 7/332 (2%)

Query: 55  MGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MGPP K VRTISQEAFDE+VKEN+EDLG++PTEAL+DAIQTL+LQGVDLSGIV CVPGE 
Sbjct: 1   MGPPSKNVRTISQEAFDELVKENIEDLGLDPTEALEDAIQTLTLQGVDLSGIVTCVPGEG 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           ++++NP+I+ LERLK+L       F D+DL+EM+GL D+L+ L  G EGS N A+  +NG
Sbjct: 61  NVRENPVIKCLERLKEL------GFDDDDLDEMVGLLDELVGLFTGVEGSGNVAIGVRNG 114

Query: 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233
           G+ELVCSIC  +   S++VL S LKT+ALL+HDVQSTE FR+  GPK++V IL  G+E  
Sbjct: 115 GLELVCSICSNIPIVSEKVLVSALKTLALLIHDVQSTEMFRSSDGPKMVVGILKGGSESL 174

Query: 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293
           E+LN+GFAVVAA+ATGNEVVKE  +ELKIDELILE+L+RQ    IQ LYD+IRVLLTPDD
Sbjct: 175 EVLNTGFAVVAAAATGNEVVKELLIELKIDELILEVLNRQSKGIIQGLYDSIRVLLTPDD 234

Query: 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN 353
           ++VVASQVYGYARRFAKIGIARALV SL +GL+SPSL+SASIALKAVAVNDEICKS+AE+
Sbjct: 235 NRVVASQVYGYARRFAKIGIARALVESLRSGLTSPSLVSASIALKAVAVNDEICKSIAES 294

Query: 354 GGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           GGID + +CIDDSG  GNK VAR CCSLLSK+
Sbjct: 295 GGIDVIFKCIDDSGEHGNKIVARACCSLLSKL 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561675|ref|XP_002521847.1| Armadillo repeat-containing protein, putative [Ricinus communis] gi|223538885|gb|EEF40483.1| Armadillo repeat-containing protein, putative [Ricinus communis]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/344 (68%), Positives = 279/344 (81%), Gaps = 4/344 (1%)

Query: 44  FFVRTDLTAHEMGPP-KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDL 102
            + R  L   EMGPP K  RTISQEAFDE+VKENME+LGM+PTEAL+DA+QTL+LQGVDL
Sbjct: 229 IYRRRRLAQREMGPPNKNARTISQEAFDELVKENMEELGMDPTEALEDAMQTLNLQGVDL 288

Query: 103 SGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDED-LNEMMGLFDKLIELCGGNE 161
           SGIV CVPGES+  DNP++Q L RLK++D  S D  S  D ++E+  LFDKLI L    E
Sbjct: 289 SGIVTCVPGESNASDNPVMQCLGRLKEIDSISIDPISSYDYISEIGELFDKLIGL--STE 346

Query: 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221
            S N A+  KNGG++LVCSIC K+    K VL   LK +AL ++DVQSTETFR+ GG  +
Sbjct: 347 ASANVAIGVKNGGIQLVCSICSKIPNQFKAVLVVGLKALALFLYDVQSTETFRSSGGATI 406

Query: 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281
           L  IL +GNE+ +IL+SGF+VVAA+ATGNE++KES+MELK+DELIL+ L+ Q   SIQ+L
Sbjct: 407 LAGILKNGNENIDILDSGFSVVAAAATGNEILKESFMELKVDELILQALNGQHKGSIQNL 466

Query: 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341
           YDAIRVLLTPDDD++VASQVYGYARRFAKIGIA ALV SLH GL+SPSL+SA IALKAVA
Sbjct: 467 YDAIRVLLTPDDDRIVASQVYGYARRFAKIGIAGALVESLHGGLTSPSLVSACIALKAVA 526

Query: 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           VNDEICKS+AE GGIDA+L+CIDDSG QGNKTVAR CCSLLSK+
Sbjct: 527 VNDEICKSIAERGGIDAILQCIDDSGEQGNKTVARTCCSLLSKL 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428709|ref|XP_002281840.1| PREDICTED: armadillo repeat-containing protein 6 [Vitis vinifera] gi|297741329|emb|CBI32460.3| unnamed protein product [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/334 (68%), Positives = 274/334 (82%), Gaps = 11/334 (3%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGMEP EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMEPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDE-DLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173
           + DNP+IQSL+RLKQLD       SD     EM+ +FDKL ELC   EGS NAA+AT+NG
Sbjct: 61  VGDNPVIQSLDRLKQLD-------SDWVGFGEMVEVFDKLTELCS-IEGSDNAAIATRNG 112

Query: 174 GVELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE 231
           GVE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D ++
Sbjct: 113 GVEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQ 172

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291
           + +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTP
Sbjct: 173 NVDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTP 232

Query: 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA 351
           DD++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+A
Sbjct: 233 DDNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIA 292

Query: 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           E+GGIDA+LRCIDDSG QGNKTVAR CCSLLSK+
Sbjct: 293 ESGGIDAVLRCIDDSGEQGNKTVARACCSLLSKL 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858319|emb|CAN81421.1| hypothetical protein VITISV_035941 [Vitis vinifera]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/333 (68%), Positives = 274/333 (82%), Gaps = 9/333 (2%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MG  K VRTISQ AFDE+V+ENMEDLGM+P EAL+DA+QTL+LQGVDLSGIV CVPG+ S
Sbjct: 1   MGQKKGVRTISQAAFDELVRENMEDLGMDPAEALEDALQTLTLQGVDLSGIVACVPGDGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
           + DNP+IQSL+RL QLD + +  F      EM+ +FDKL ELC   EGS NAA+AT+NGG
Sbjct: 61  VGDNPVIQSLDRLNQLD-SDRGGF-----GEMVEVFDKLTELCS-IEGSGNAAIATRNGG 113

Query: 175 VELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED 232
           VE+VCS+C K+R  C    VL S L TMA L+HDVQSTETF+  GGPK++V +L D +++
Sbjct: 114 VEVVCSVCSKIRVGCEGDSVLVSGLTTMASLLHDVQSTETFQKIGGPKIVVGVLNDASQN 173

Query: 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292
            +ILNSGF+VVAA+ATGNE++KES+M+L+IDELI++I+       + S+YDAI VLLTPD
Sbjct: 174 VDILNSGFSVVAAAATGNEILKESFMDLQIDELIIQIMKSHGRGRVHSIYDAICVLLTPD 233

Query: 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352
           D++VVASQVYGYARRFAK GIA ALV SL  GL SPSL+SASIALKAVAVNDEICKS+AE
Sbjct: 234 DNRVVASQVYGYARRFAKAGIAGALVESLGEGLRSPSLVSASIALKAVAVNDEICKSIAE 293

Query: 353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           +GGIDA+LRCIDDSG QGNKTVAR CCSLLSK+
Sbjct: 294 SGGIDAVLRCIDDSGEQGNKTVARACCSLLSKL 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517545|ref|XP_004165806.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/331 (68%), Positives = 278/331 (83%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSAGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           GIDA+LRCIDDSG QGNK VA++CCSLLSK+
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKL 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438432|ref|XP_004136992.1| PREDICTED: armadillo repeat-containing protein 6-like [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/331 (68%), Positives = 278/331 (83%)

Query: 55  MGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS 114
           MGPPKT+RTISQEAFDEVV+EN+EDLGM+PTEALQDAI+TL+LQGVDLSGIV+CVPGE S
Sbjct: 1   MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCVPGEGS 60

Query: 115 LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG 174
            +DNPLIQSLERLKQLD +SKDK SD+ ++E++ LFD++ +LCG  + S NA++A +NGG
Sbjct: 61  ARDNPLIQSLERLKQLDGDSKDKISDQFVDEIVVLFDRISDLCGSTQESGNASIALRNGG 120

Query: 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE 234
           +EL+CS+CYK+    +  + S LKTM LL+ D+ STE FR   GP+++++IL  G ++  
Sbjct: 121 LELLCSLCYKIPSDCEPAVVSSLKTMVLLLQDLHSTEIFRNSNGPRIVMDILNSGKQNVN 180

Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294
           IL  GFAVVAA+AT NEVVKE +ME+ IDELIL+ LS  R D I SLYDAIRVLLT DD 
Sbjct: 181 ILYGGFAVVAAAATANEVVKEVFMEMNIDELILQTLSTYRGDCINSLYDAIRVLLTADDH 240

Query: 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354
           +VVASQVYGYARRFAKIGIA ALV SLH GL+S  L+SA IAL+AV+VNDEICKS+AENG
Sbjct: 241 RVVASQVYGYARRFAKIGIANALVDSLHEGLNSSGLVSACIALRAVSVNDEICKSIAENG 300

Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           GIDA+LRCIDDSG QGNK VA++CCSLLSK+
Sbjct: 301 GIDAVLRCIDDSGDQGNKMVAKVCCSLLSKL 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074674|gb|ACJ85697.1| unknown [Medicago truncatula] gi|388518985|gb|AFK47554.1| unknown [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/336 (63%), Positives = 269/336 (80%), Gaps = 17/336 (5%)

Query: 55  MGPPKTV-RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113
           MG PKT  R +SQEAF+++V EN+ DL M+PTEALQDAIQTL+LQGVDLSGIV  +PGES
Sbjct: 1   MGVPKTTARAVSQEAFNDLVFENINDLEMDPTEALQDAIQTLTLQGVDLSGIVTSLPGES 60

Query: 114 SLKDNPLIQSLERLKQLDLNSKDKFSDED--LNEMMGLFDKLIELCGGNEGSVNAAVATK 171
               NP+I+ LE+LKQ        F +ED  L+E++ +FDKL+ELCGG +G+ NAA+ATK
Sbjct: 61  ----NPVIECLEKLKQ--------FENEDITLDEIVEVFDKLVELCGGEDGNGNAAIATK 108

Query: 172 NGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG 229
           NGGVELVC +  K+R   GS+ VL S L  +ALL+HDVQST TF+   GP++++ I+ D 
Sbjct: 109 NGGVELVCGVFEKIRSSDGSRVVLVSGLNALALLLHDVQSTGTFQNSNGPRIIIGIINDN 168

Query: 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289
            ++ ++LNS F VVA++ATG+E+VK+S+MELK+DELI+EI+S  +N  IQSLYDAIRVLL
Sbjct: 169 KQNIDVLNSSFRVVASAATGDEIVKDSFMELKVDELIVEIMSVHKNPGIQSLYDAIRVLL 228

Query: 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS 349
           TPDD++V+ASQVYGYAR+FAKIGI  ALV SLH GLSSP L+SA I LKA AVNDEICKS
Sbjct: 229 TPDDNRVLASQVYGYARKFAKIGITDALVDSLHTGLSSPDLVSACITLKATAVNDEICKS 288

Query: 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           +AE GGID +L+CIDDSG QGN  VA++CCSLLSK+
Sbjct: 289 IAEKGGIDVVLKCIDDSGEQGNTDVAKVCCSLLSKL 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521205|ref|XP_003529247.1| PREDICTED: armadillo repeat-containing protein 6 [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/339 (60%), Positives = 259/339 (76%), Gaps = 19/339 (5%)

Query: 55  MGPP---KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPG 111
           MGP     T+R+ISQEAF+E+V EN++DLGM+PTEALQDAIQTL+LQGVDLSGIV CVPG
Sbjct: 1   MGPAAKTTTMRSISQEAFEELVNENIDDLGMDPTEALQDAIQTLTLQGVDLSGIVTCVPG 60

Query: 112 ESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGG--NEGSVNAAVA 169
           E+    NP+I+ L+RL+ L+       ++ D N +   F+ L ELC    ++ + N A+A
Sbjct: 61  ET----NPVIECLDRLRHLE-------TEPDQNLIAQAFNTLHELCANPNSDSNSNVAIA 109

Query: 170 TKNGGVELVCSICYK--MRCGSKRV-LDSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL 226
           TKNG VEL CS+C K  +  GS  V L S L  ++ L+HDVQST  F    GP++++  L
Sbjct: 110 TKNGAVELACSLCSKISLAAGSHVVPLVSALNALSSLLHDVQSTGAFHRCDGPRIVMAFL 169

Query: 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIR 286
           +D   + E+L+SGF VVA++ATG+E+VKE++MELK+DELILEI+S  R+  IQSLYDA+ 
Sbjct: 170 VDNKGNVELLSSGFRVVASAATGDEIVKEAFMELKVDELILEIMSLHRHKGIQSLYDAVC 229

Query: 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346
            LL PDDD+VVASQVYGYAR+FAKIGIA ALV SL AG+SS  LISA I L+AVAVNDEI
Sbjct: 230 ALLMPDDDRVVASQVYGYARKFAKIGIAEALVDSLSAGVSSHDLISACITLRAVAVNDEI 289

Query: 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385
           CKS+AE GGIDALLRCIDDSG QG+K VA++CCSLLSK+
Sbjct: 290 CKSIAEKGGIDALLRCIDDSGEQGDKAVAKVCCSLLSKL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418335|ref|NP_567944.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|20466738|gb|AAM20686.1| putative protein [Arabidopsis thaliana] gi|111074180|gb|ABH04463.1| At4g33945 [Arabidopsis thaliana] gi|332660898|gb|AEE86298.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/328 (63%), Positives = 262/328 (79%), Gaps = 4/328 (1%)

Query: 61  VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
           VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct: 3   VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query: 121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
           I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct: 63  IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query: 180 SICYKMRCGSK--RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
           SIC K++  ++  RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct: 122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
           +GFAVVAA+ATGNEVVK+ +MELKIDELIL++L+R+   +I++LYDAI  LLTPDD +VV
Sbjct: 182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
           ASQVYGYAR FAK+GIA AL  +L AG+ S SL+SAS ALKA+AVNDEICKS+AE+GGID
Sbjct: 242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query: 358 ALLRCIDDSGLQGNKTVARICCSLLSKV 385
            LLRCIDDSG QGNKT A+ CCSLLSK+
Sbjct: 302 TLLRCIDDSGEQGNKTAAKTCCSLLSKL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:505006553	464	AT4G33945 [Arabidopsis thalian	0.841	0.698	0.564	5.7e-91
MGI|MGI:1924063	468	Armc6 "armadillo repeat contai	0.763	0.628	0.219	8.4e-09
FB|FBgn0034315	464	CG5721 [Drosophila melanogaste	0.761	0.631	0.203	6.5e-08

TAIR|locus:505006553 AT4G33945 [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 185/328 (56%), Positives = 233/328 (71%)

Query:    61 VRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPL 120
             VRTISQEAFD++V+EN+EDLGM+P+EAL+DA+ TL LQGVDL GI+ CVPGESS+KDNP+
Sbjct:     3 VRTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPV 62

Query:   121 IQSLERLKQLDLNSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
             I  L+RLK+ D  S D    DE  +E+  LF  L ELC   E S NAA+ATK+G V+L C
Sbjct:    63 IACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQE-SGNAAIATKHGAVDLTC 121

Query:   180 SICYKMRCG--SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             SIC K++    S RVL  C K +A+L+ D+QSTE FR   GP ++V++L D + D ++L+
Sbjct:   122 SICSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLD 181

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
             +GFAVVAA+ATGNEVVK+ +M            +R+   +I++LYDAI  LLTPDD +VV
Sbjct:   182 AGFAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVV 241

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
             ASQVYGYAR FAK+GIA AL  +L                    VNDEICKS+AE+GGID
Sbjct:   242 ASQVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGID 301

Query:   358 ALLRCIDDSGLQGNKTVARICCSLLSKV 385
              LLRCIDDSG QGNKT A+ CCSLLSK+
Sbjct:   302 TLLRCIDDSGEQGNKTAAKTCCSLLSKL 329

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1924063 Armc6 "armadillo repeat containing 6" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 68/310 (21%), Positives = 125/310 (40%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
             + I+QE FD  V+EN+E+  M   EA+++A++    QGVDLS IVK +P  S   L++ P
Sbjct:     4 KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62

Query:   120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
                 L+ L  L    ++  +   L E+     +  + C   + S    +A + G   ++ 
Sbjct:    63 THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116

Query:   180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
             +        ++ +L   L  +A+L  D Q         G  LLV  L     + E+   G
Sbjct:   117 AAWQLAATSNQGLLLQALNALAVLT-DGQPD--LLDAQGLHLLVATLAQNAANTELTCCG 173

Query:   240 FAVVAASATGNEVVKESYMXXXXXXXXXXXXSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
                V      +E  ++  +            ++  Q  D ++    A+RV+   DD +V 
Sbjct:   174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRVP 233

Query:   298 ASQVYGYARRFAKIGIA-RALVHSLHXXXXXXXXXXXX-XXXXXXXVNDEICKSVAENGG 355
                 + +A+   +     + L+ +                      V +E C+ V + GG
Sbjct:   234 FGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVIDLGG 293

Query:   356 IDALLRCIDD 365
             +  L+  + D
Sbjct:   294 LGILVTLLAD 303

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034315 CG5721 [Drosophila melanogaster (taxid:7227)]

 Score = 152 (58.6 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 63/309 (20%), Positives = 135/309 (43%)

Query:    62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
             + ISQ+ FD+VVKEN+ +  M P+EA ++ I+    QG++L+ I+K +   +     P+I
Sbjct:     3 KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDL-SVNPQTGQPVI 61

Query:   122 -QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
              ++++++K+  +  K + + E L E +   D   E C   +   +  +A KNG  + + +
Sbjct:    62 NETVDKIKE-HIGQKLEETTE-LLEQLATLDA--E-C--KKSLAHRVLAGKNGAHDALIT 114

Query:   181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
             +  +       ++ VL   L+ +  L H  +  + F       +++ +L    E  E+  
Sbjct:   115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171

Query:   238 SGFAVVAASATGNEVVKESYMXXXXXXXXXXXXSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
                  +  +   +E+ +++ M             + ++  ++ L    R L+  DD +V 
Sbjct:   172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231

Query:   298 ASQVYGYARRFAKIGIARALVHSLHXXXXXXXXXXXXXXXXXXXVNDEICKSVAENGGID 357
                 + +AR+ A   +   LV  L                    V  E+C ++ E GG+ 
Sbjct:   232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290

Query:   358 ALLRCIDDS 366
             ++   +  +
Sbjct:   291 SVFEIMSSN 299


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      385       354   0.00079  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.01u 0.12s 30.13t   Elapsed:  00:00:02
  Total cpu time:  30.01u 0.12s 30.13t   Elapsed:  00:00:02
  Start:  Mon May 20 18:27:14 2013   End:  Mon May 20 18:27:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
KOG4199	461	consensus Uncharacterized conserved protein [Funct	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.88
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.86
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.86
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.8
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.79
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.54
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.42
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.34
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.28
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.24
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.22
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.19
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.19
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.16
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.16
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.89
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.83
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.77
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.73
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.68
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.66
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.63
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.56
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.5
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.46
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.35
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.35
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.26
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.22
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.94
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.85
PRK09687	280	putative lyase; Provisional	97.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.67
PRK09687	280	putative lyase; Provisional	97.64
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.53
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.47
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.4
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.34
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.26
PF05536	543	Neurochondrin: Neurochondrin	97.22
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.15
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.05
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.97
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.94
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.88
PF05536	543	Neurochondrin: Neurochondrin	96.82
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.8
KOG4646	173	consensus Uncharacterized conserved protein, conta	96.77
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.67
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.63
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.36
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.33
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.3
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.23
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.11
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.08
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.06
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.93
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.79
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	95.72
KOG3678	832	consensus SARM protein (with sterile alpha and arm	95.66
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.65
COG5369	743	Uncharacterized conserved protein [Function unknow	95.64
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.49
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.32
PTZ00429	746	beta-adaptin; Provisional	95.25
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.21
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.02
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	94.99
TIGR02270	410	conserved hypothetical protein. Members are found	94.9
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.82
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.51
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.22
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.2
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	93.66
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.87
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	92.68
COG5369	743	Uncharacterized conserved protein [Function unknow	92.67
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	92.6
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.46
TIGR02270	410	conserved hypothetical protein. Members are found	92.45
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	92.41
PTZ00429	746	beta-adaptin; Provisional	91.78
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.75
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.35
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	91.33
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	89.99
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	89.84
KOG3036	293	consensus Protein involved in cell differentiation	89.36
KOG2973	353	consensus Uncharacterized conserved protein [Funct	89.06
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	88.88
PF05004	309	IFRD: Interferon-related developmental regulator (	88.59
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.26
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	87.75
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	87.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.01
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	86.67
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	86.47
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	86.32
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	84.35
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.99
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	83.13
KOG4413	524	consensus 26S proteasome regulatory complex, subun	82.8
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	82.8
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	82.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	81.24
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	80.15

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.3e-59  Score=440.32  Aligned_cols=313  Identities=36%  Similarity=0.554  Sum_probs=290.0

Q ss_pred             hhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 016639           60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFS  139 (385)
Q Consensus        60 ~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~  139 (385)
                      ++|+|+|+|||.+|+|||++|.|.|+||.+++|+||++||+||+||+|+.|.....+...+...++++++.+.+      
T Consensus         1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~qp~i~~~~~~i~e~i~~------   74 (461)
T KOG4199|consen    1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVINETVDKIKEHIGQ------   74 (461)
T ss_pred             CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCCCCCCCccHHHhHHHHHHHHHh------
Confidence            46899999999999999999999999999999999999999999999998854333322344788888888774      


Q ss_pred             cccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCc
Q 016639          140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP  219 (385)
Q Consensus       140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi  219 (385)
                        -++++.+.+..|...|++  +.++|..++++|+++.++-++...+.++..++-++|.+|..++.++   +++.++.|+
T Consensus        75 --~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g~  147 (461)
T KOG4199|consen   75 --KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEAM  147 (461)
T ss_pred             --hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhccccH
Confidence              689999999999999998  9999999999999999999887655567888989999999988876   899999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHhcCCCccchhh
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVA  298 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~Dd~rv~~  298 (385)
                      ..++.+|....++.++...+++|+.++|.+||.|||.||+.++++++.+.|.+++ .++++++||++|.|++|||+||+|
T Consensus       148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f  227 (461)
T KOG4199|consen  148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF  227 (461)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence            9999999999999999999999999999999999999999999999998887654 479999999999999999999999


Q ss_pred             hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHH
Q 016639          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (385)
Q Consensus       299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a  378 (385)
                      |++|+|+|+|++.|++..|+++|+.+.+++++.++|.+|+.||+|+|+|++|+|.|||+.|+++|.++.+++++.++|+|
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~  307 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC  307 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 016639          379 CSLLSKV  385 (385)
Q Consensus       379 ~~~Lr~l  385 (385)
                      |++||+|
T Consensus       308 lslLral  314 (461)
T KOG4199|consen  308 LSLLRAL  314 (461)
T ss_pred             HHHHHHH
Confidence            9999986

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-40  Score=331.31  Aligned_cols=342  Identities=16%  Similarity=0.221  Sum_probs=290.1

Q ss_pred             hcccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHh
Q 016639            9 YKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKE   75 (385)
Q Consensus         9 ~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~e   75 (385)
                      -+-||++.+.|+.++++    ||++++||     +.|+||.+|.||.|.+++.+||+++    ++++..|++| -.||..
T Consensus        73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~a  151 (514)
T KOG0166|consen   73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDA  151 (514)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccC
Confidence            35689999999999999    99999999     7799999999999999999999998    8999888888 999999


Q ss_pred             h-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCC-----------------------------------
Q 016639           76 N-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSL-----------------------------------  115 (385)
Q Consensus        76 n-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~-----------------------------------  115 (385)
                      |     |..+.-...+..++||       |.|+||++++|..++.                                   
T Consensus       152 gavp~fi~Ll~s~~~~v~eQav-------WALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAV-------WALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHH-------HHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            9     4445666666668999       9999999888775332                                   


Q ss_pred             C--Cch----HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCc
Q 016639          116 K--DNP----LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGS  189 (385)
Q Consensus       116 ~--~~~----v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d  189 (385)
                      +  -+|    +..+|..|...+-..       |.+.+..++|+|+++.++  .++.-....+.|.+|.||.+|.+.   +
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll~~~-------D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~---~  292 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLLHST-------DEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHS---S  292 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCC---C
Confidence            0  011    112333333333333       788999999999999998  888888899999999999999984   6


Q ss_pred             HhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639          190 KRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (385)
Q Consensus       190 ~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~  268 (385)
                      ..++.+||++++|+++|++. ++.+++.|+++.|..+|..+ ....+.++|||+|+|+++|+.+++++|+++|.+|.|+.
T Consensus       293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~  371 (514)
T KOG0166|consen  293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN  371 (514)
T ss_pred             cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence            77899999999999999887 69999999999999999853 34568999999999999999999999999999999999


Q ss_pred             HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-------
Q 016639          269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-------  341 (385)
Q Consensus       269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-------  341 (385)
                      +|+++..+.+|+|||+|.|++.        |+++++.+++++.|+|+|+|++|.. .|..++..++.+|.++-       
T Consensus       372 ~l~~~ef~~rKEAawaIsN~ts--------~g~~~qi~yLv~~giI~plcdlL~~-~D~~ii~v~Ld~l~nil~~~e~~~  442 (514)
T KOG0166|consen  372 LLQTAEFDIRKEAAWAISNLTS--------SGTPEQIKYLVEQGIIKPLCDLLTC-PDVKIILVALDGLENILKVGEAEK  442 (514)
T ss_pred             HHhccchHHHHHHHHHHHhhcc--------cCCHHHHHHHHHcCCchhhhhcccC-CChHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999994        7778999999999999999999955 47666677777777762       


Q ss_pred             cC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          342 VN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       342 ~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ..  ++.+..|+++||++++ +.|+.   |+|.++++.|+++|.+
T Consensus       443 ~~~~n~~~~~IEe~ggldki-E~LQ~---hen~~Iy~~A~~II~~  483 (514)
T KOG0166|consen  443 NRGTNPLAIMIEEAGGLDKI-ENLQS---HENEEIYKKAYKIIDT  483 (514)
T ss_pred             cccccHHHHHHHHccChhHH-HHhhc---cccHHHHHHHHHHHHH
Confidence            11  7899999999999999 55666   5667999999999864

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7e-38  Score=297.95  Aligned_cols=347  Identities=16%  Similarity=0.173  Sum_probs=285.1

Q ss_pred             cchhhcccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHH
Q 016639            5 PKSYYKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDE   71 (385)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~   71 (385)
                      |+---.-||++.|.|+|++-+    ||+|-+||     ..|.||+||+|+.......+||+++    +++++.||+| .-
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kv  152 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KV  152 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EE
Confidence            444445799999999999988    99999999     8899999999999999999999988    8999999999 77


Q ss_pred             HHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCC-----CCchHHH-------------------
Q 016639           72 VVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSL-----KDNPLIQ-------------------  122 (385)
Q Consensus        72 ~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~-----~~~~v~~-------------------  122 (385)
                      ||..+     |..+.-+-.+..+++|       |.|+||..|++++++.     .-.|++.                   
T Consensus       153 Vvd~~AVPlfiqlL~s~~~~V~eQav-------WALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL  225 (526)
T COG5064         153 VVDAGAVPLFIQLLSSTEDDVREQAV-------WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL  225 (526)
T ss_pred             EEeCCchHHHHHHHcCchHHHHHHHH-------HHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence            77766     7777777778889999       9999999998887554     1122221                   


Q ss_pred             ------------------HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhc
Q 016639          123 ------------------SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYK  184 (385)
Q Consensus       123 ------------------al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~  184 (385)
                                        ++.-|..++-.       -+++.+..|+|++++++.+  ..+....+.+.|..+.||++|.+
T Consensus       226 SNlcRGknP~P~w~~isqalpiL~KLiys-------~D~evlvDA~WAiSYlsDg--~~E~i~avld~g~~~RLvElLs~  296 (526)
T COG5064         226 SNLCRGKNPPPDWSNISQALPILAKLIYS-------RDPEVLVDACWAISYLSDG--PNEKIQAVLDVGIPGRLVELLSH  296 (526)
T ss_pred             HHhhCCCCCCCchHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHHHHHhcC
Confidence                              11112222211       2678999999999999998  67777788999999999999998


Q ss_pred             ccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 016639          185 MRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKID  263 (385)
Q Consensus       185 ~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i  263 (385)
                         .+..++.+|++.++|+.+|++. ++.++++|.++.+-.+|.+.  ...+.+++||.|+|+++||-++.+.+++++.+
T Consensus       297 ---~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqavid~nli  371 (526)
T COG5064         297 ---ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAVIDANLI  371 (526)
T ss_pred             ---ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHHHhcccc
Confidence               4788999999999999999887 69999999999999999864  34899999999999999999999999999999


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh--
Q 016639          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA--  341 (385)
Q Consensus       264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La--  341 (385)
                      |+|+++|........|+|||++.|++..--.|      ++..|++++.|+|+||+++|....++ +.+-++-++.+.-  
T Consensus       372 PpLi~lls~ae~k~kKEACWAisNatsgg~~~------PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~  444 (526)
T COG5064         372 PPLIHLLSSAEYKIKKEACWAISNATSGGLNR------PDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKV  444 (526)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccccCC------chHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhh
Confidence            99999999998899999999999998654443      37899999999999999999886454 3333444444431  


Q ss_pred             ---------cC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          342 ---------VN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       342 ---------~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                               .+ |.+...++++||++.+..+..+    .|..++..|.++|.+
T Consensus       445 Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s----~n~~iy~KAYsIIe~  493 (526)
T COG5064         445 GEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDS----VNRTIYDKAYSIIEK  493 (526)
T ss_pred             hhHHHHhccCCccHHHHHHHhcccHHHHHHhhhc----cccHHHHHHHHHHHH
Confidence                     12 4677888889999999887654    445899999998864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=1.7e-24  Score=246.28  Aligned_cols=231  Identities=16%  Similarity=0.186  Sum_probs=191.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~  220 (385)
                      +.+.+.+++|.|+++|++  +.++|..+.+.|++|.|+++|++   ++..++..|+++|++|+.+++. +..++++||||
T Consensus       417 ~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP  491 (2102)
T PLN03200        417 TADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIP  491 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            578999999999999997  89999999999999999999998   4788999999999999987764 68899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh--
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV--  297 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~--  297 (385)
                      .|+++|++  ++.+++..|+|+|.|+|.. +.+++.++ ++|++++|+++|++++.+++++|+|+|.+|+.+.|.+..  
T Consensus       492 ~LV~LL~s--~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~  568 (2102)
T PLN03200        492 PLVQLLET--GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ  568 (2102)
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence            99999985  4789999999999999874 55555555 889999999999999889999999999999754443210  


Q ss_pred             ---------------hhhc----------hhHHHHHH-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHH
Q 016639          298 ---------------ASQV----------YGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSV  350 (385)
Q Consensus       298 ---------------~g~a----------~~~a~~I~-e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I  350 (385)
                                     .-.+          .+-....+ ..|||+.|+++|+++ ++.+++.++++|.+++.. .++|+.+
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~av  647 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESL  647 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                           0000          01111122 468999999999986 777999999999999875 4899999


Q ss_pred             HHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       351 ~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +..||+++++.+++++  .  .++.++++.+|-+|
T Consensus       648 v~agaIpPLV~LLss~--~--~~v~keAA~AL~nL  678 (2102)
T PLN03200        648 ATDEIINPCIKLLTNN--T--EAVATQSARALAAL  678 (2102)
T ss_pred             HHcCCHHHHHHHHhcC--C--hHHHHHHHHHHHHH
Confidence            9999999999999873  2  37888888887654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=5.7e-22  Score=226.00  Aligned_cols=272  Identities=16%  Similarity=0.116  Sum_probs=214.8

Q ss_pred             HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHH
Q 016639           77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLI  154 (385)
Q Consensus        77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~  154 (385)
                      +..+.|.-.|..++++       ++|++++.+....    .+.+.  ..+..|..++...       +.+.+..+++.|+
T Consensus       410 V~LL~~~~~evQ~~Av-------~aL~~L~~~~~e~----~~aIi~~ggIp~LV~LL~s~-------s~~iQ~~A~~~L~  471 (2102)
T PLN03200        410 VGLITMATADVQEELI-------RALSSLCCGKGGL----WEALGGREGVQLLISLLGLS-------SEQQQEYAVALLA  471 (2102)
T ss_pred             hhhhccCCHHHHHHHH-------HHHHHHhCCCHHH----HHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence            3445577788888888       7777776553221    11222  3678888888764       6788999999999


Q ss_pred             HHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcHHHHHHHhcC----
Q 016639          155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDG----  229 (385)
Q Consensus       155 ~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~----  229 (385)
                      .++++  +++++..++++|+||+|+.+|++   ++.+++..|+|+|+||+.+.+..+.++ +.|+++.|+++|+++    
T Consensus       472 nLa~~--ndenr~aIieaGaIP~LV~LL~s---~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~  546 (2102)
T PLN03200        472 ILTDE--VDESKWAITAAGGIPPLVQLLET---GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG  546 (2102)
T ss_pred             HHHcC--CHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence            99997  88999999999999999999987   478899999999999987554333333 445555555555432    


Q ss_pred             -------------------------------------------------------------------------CCCHHHH
Q 016639          230 -------------------------------------------------------------------------NEDPEIL  236 (385)
Q Consensus       230 -------------------------------------------------------------------------~~~~~v~  236 (385)
                                                                                               +++.+++
T Consensus       547 q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ik  626 (2102)
T PLN03200        547 QEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ  626 (2102)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHH
Confidence                                                                                     1234566


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHH
Q 016639          237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA  316 (385)
Q Consensus       237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~  316 (385)
                      +.|+|+|.++|.++.++++.++..|++++|+.+|++++.+++++++|+|.+|+.        ++.+++..++++.|+|+|
T Consensus       627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~--------~~~~~q~~~~v~~GaV~p  698 (2102)
T PLN03200        627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR--------SIKENRKVSYAAEDAIKP  698 (2102)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh--------CCCHHHHHHHHHcCCHHH
Confidence            778888888888899999999999999999999999999999999999999984        223355667889999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          317 LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       317 Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      |+++|+.. +..+...++.+|.+++...+.+.+|.+.||++.|+++|+++++    +.-+.|+++|.+
T Consensus       699 L~~LL~~~-d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~----~~k~~Aa~AL~~  761 (2102)
T PLN03200        699 LIKLAKSS-SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL----EGKRNAARALAQ  761 (2102)
T ss_pred             HHHHHhCC-ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh----HHHHHHHHHHHH
Confidence            99999885 7778999999999999999999999999999999999998643    455666666644

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.2e-21  Score=196.77  Aligned_cols=236  Identities=14%  Similarity=0.149  Sum_probs=197.4

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      +++.|...+....      ....++.+.|.|+.+|++ ++|. ..+-.-..++|.|..++.+   .|+.++..|+|+|++
T Consensus       195 ~l~pLl~~l~~~~------~~~~lRn~tW~LsNlcrg-k~P~-P~~~~v~~iLp~L~~ll~~---~D~~Vl~Da~WAlsy  263 (514)
T KOG0166|consen  195 ALDPLLRLLNKSD------KLSMLRNATWTLSNLCRG-KNPS-PPFDVVAPILPALLRLLHS---TDEEVLTDACWALSY  263 (514)
T ss_pred             chHHHHHHhcccc------chHHHHHHHHHHHHHHcC-CCCC-CcHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Confidence            5566666655431      246889999999999998 3333 3444445789999999998   599999999999999


Q ss_pred             HhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc-CChHHHHH
Q 016639          203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS  280 (385)
Q Consensus       203 L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~  280 (385)
                      |++|... .+.+++.|.++.|+.+|.+  .+..++..|++++.|+++|++.+.+.+++.|+++.|..+|.. +...+.++
T Consensus       264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~--~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE  341 (514)
T KOG0166|consen  264 LTDGSNEKIQMVIDAGVVPRLVDLLGH--SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE  341 (514)
T ss_pred             HhcCChHHHHHHHHccchHHHHHHHcC--CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence            9988665 4899999999999999986  456788899999999999999999999999999999999995 45568889


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDA  358 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~  358 (385)
                      |||+|+|+|.         |..+|+.++..+|.+|.|+.+|.+. +-.++++++|+++|++..  ++.-.-+++.|.|+.
T Consensus       342 AcW~iSNItA---------G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~p  411 (514)
T KOG0166|consen  342 ACWTISNITA---------GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKP  411 (514)
T ss_pred             HHHHHHHhhc---------CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchh
Confidence            9999999984         4557888999999999999999996 667899999999999864  577789999999999


Q ss_pred             HHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          359 LLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       359 Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.++| ...|.   .+...++..|.+|
T Consensus       412 lcdlL-~~~D~---~ii~v~Ld~l~ni  434 (514)
T KOG0166|consen  412 LCDLL-TCPDV---KIILVALDGLENI  434 (514)
T ss_pred             hhhcc-cCCCh---HHHHHHHHHHHHH
Confidence            99999 54443   4688888777664

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.86  E-value=4.1e-21  Score=183.68  Aligned_cols=305  Identities=13%  Similarity=0.146  Sum_probs=237.8

Q ss_pred             CCCCCccccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCC
Q 016639           34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES  113 (385)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~  113 (385)
                      +++-|-||-..|.+.+++++|-.-.  +-.  =--|-+..+|+            +.-.-|||+ -|.|.||..+.    
T Consensus        88 q~qav~kFR~~LS~E~~PPIq~VId--aGv--VpRfvefm~~~------------q~~mlqfEA-aWalTNiaSGt----  146 (526)
T COG5064          88 QLQAVYKFRKLLSKETSPPIQPVID--AGV--VPRFVEFMDEI------------QRDMLQFEA-AWALTNIASGT----  146 (526)
T ss_pred             HHHHHHHHHHHhccccCCCchhHHh--ccc--cHHHHHHHHhc------------chhHHHHHH-HHHHhhhccCc----
Confidence            5566667777788888888772211  000  01233333322            111223433 27899995432    


Q ss_pred             CCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHh
Q 016639          114 SLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKR  191 (385)
Q Consensus       114 ~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~  191 (385)
                      ..++|.++  .++..+...+.+.       +.+...+++|+|-++...  ++.+|..+.+.|++.+|+.++.+.. .+.+
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s~-------~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~-~~is  216 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSST-------EDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSA-IHIS  216 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcCc-------hHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhcc-chHH
Confidence            22445555  4677788888765       678888999999999885  9999999999999999999998642 3568


Q ss_pred             HHHHHHHHHHHHhcCCccchhHh-hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH
Q 016639          192 VLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL  270 (385)
Q Consensus       192 vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL  270 (385)
                      ++.++.|+|+||+.|....++-- =..++|.|.+++-.  .+++++..|||+|+.+..+..+..+.|.+.|..+.|+++|
T Consensus       217 mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys--~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL  294 (526)
T COG5064         217 MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS--RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL  294 (526)
T ss_pred             HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence            99999999999999965544432 24678999999874  6899999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHH
Q 016639          271 SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKS  349 (385)
Q Consensus       271 ~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~  349 (385)
                      .+.+..++..|.+.+.|+.+++|.+..         .|..+|.++++-.+|.+. ...+.+++||+++|+... .+..+.
T Consensus       295 s~~sa~iqtPalR~vGNIVTG~D~QTq---------viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqa  364 (526)
T COG5064         295 SHESAKIQTPALRSVGNIVTGSDDQTQ---------VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQA  364 (526)
T ss_pred             cCccccccCHHHHhhcCeeecCcccee---------hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHH
Confidence            998878888999999999999988775         477999999999999875 346899999999999654 589999


Q ss_pred             HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       350 I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.+..-+++|+.+|...  .-  .+-|+||.++.|.
T Consensus       365 vid~nliPpLi~lls~a--e~--k~kKEACWAisNa  396 (526)
T COG5064         365 VIDANLIPPLIHLLSSA--EY--KIKKEACWAISNA  396 (526)
T ss_pred             HHhcccchHHHHHHHHH--HH--HHHHHHHHHHHhh
Confidence            99999999999999873  23  6889999999873

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=2.7e-19  Score=171.02  Aligned_cols=297  Identities=16%  Similarity=0.188  Sum_probs=230.1

Q ss_pred             HHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCC---------
Q 016639           67 EAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKD---------  136 (385)
Q Consensus        67 etfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~---------  136 (385)
                      +-|+|+ -+..+.|-   ++--++--.-| ..|.+++.-+++...-..+....+....|..|.....+..+         
T Consensus        74 ~~~~E~-s~ll~~l~---d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~v  149 (461)
T KOG4199|consen   74 QKLEET-TELLEQLA---DECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAV  149 (461)
T ss_pred             hhhHHH-HHHHHHHH---HHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHH
Confidence            444443 34455554   34444444455 44777887776653321111123444555555444332110         


Q ss_pred             -----CCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccch
Q 016639          137 -----KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTE  211 (385)
Q Consensus       137 -----~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~  211 (385)
                           .....+.+.....+..++..|-+  ++-||..+++.++.|.+.+.|...  +...+...+++++..|+.++|.|-
T Consensus       150 vv~lL~~~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~Li~~~l~~~--gk~~~VRel~~a~r~l~~dDDiRV  225 (461)
T KOG4199|consen  150 VLKLLALKVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILELILQVLNRE--GKTRTVRELYDAIRALLTDDDIRV  225 (461)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHHHHHHHHccc--CccHHHHHHHHHHHHhcCCCceee
Confidence                 01112556778889999999998  999999999999999999877664  344688889999999999887642


Q ss_pred             ----------hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HH
Q 016639          212 ----------TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DS  277 (385)
Q Consensus       212 ----------~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v  277 (385)
                                .|...|++..|++.|..+-+ +.++...+.+|..++..+| ..+.|+++||+..|+.+|...+.    ..
T Consensus       226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l  303 (461)
T KOG4199|consen  226 VFGQAHGHARTIAKEGILTALTEALQAGID-PDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTL  303 (461)
T ss_pred             ecchhhHHHHHHHHhhhHHHHHHHHHccCC-ccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence                      45678899999999998765 8888999999999987665 56889999999999999987433    47


Q ss_pred             HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HHHHHHHHcCc
Q 016639          278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EICKSVAENGG  355 (385)
Q Consensus       278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~c~~I~e~GG  355 (385)
                      .|.+|..||.|+.+|++|..          |++.||++.++.++..|. ++.+..++|.++.-|+.|. +....++|.||
T Consensus       304 ~k~~lslLralAG~DsvKs~----------IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~  373 (461)
T KOG4199|consen  304 AKTCLSLLRALAGSDSVKST----------IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA  373 (461)
T ss_pred             HHHHHHHHHHHhCCCchHHH----------HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch
Confidence            78899999999999999864          999999999999999988 7889999999999999984 89999999999


Q ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          356 IDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      -+..+++|+.||-+.  .|+|++|.+|||+
T Consensus       374 a~~avqAmkahP~~a--~vQrnac~~IRNi  401 (461)
T KOG4199|consen  374 ADLAVQAMKAHPVAA--QVQRNACNMIRNI  401 (461)
T ss_pred             HHHHHHHHHhCcHHH--HHHHHHHHHHHHH
Confidence            999999999998776  9999999999985

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3e-18  Score=165.30  Aligned_cols=221  Identities=19%  Similarity=0.237  Sum_probs=185.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCC--Cc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--GP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~g--gi  219 (385)
                      +...++.++..|.....   +.+||...+.+|++|.||+++++   +|..++..|+.+++++..+.-.+..+.+.+  -+
T Consensus       180 dirvqrnatgaLlnmTh---s~EnRr~LV~aG~lpvLVsll~s---~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv  253 (550)
T KOG4224|consen  180 DIRVQRNATGALLNMTH---SRENRRVLVHAGGLPVLVSLLKS---GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLV  253 (550)
T ss_pred             hhhHHHHHHHHHHHhhh---hhhhhhhhhccCCchhhhhhhcc---CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchH
Confidence            55678889999988877   69999999999999999999998   599999999999999987655566777776  89


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhh
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g  299 (385)
                      +.|+++++++  ++++++.|.-+|+++++. ++.+..|+++|++|.++++|++...+.+-+..++|||++...-+-+   
T Consensus       254 ~~Lv~Lmd~~--s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~---  327 (550)
T KOG4224|consen  254 PALVDLMDDG--SDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV---  327 (550)
T ss_pred             HHHHHHHhCC--ChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc---
Confidence            9999999974  678999999999999865 5577889999999999999998877777788888999986555544   


Q ss_pred             hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHH
Q 016639          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC  378 (385)
Q Consensus       300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a  378 (385)
                             .|+++|-+.|||++|+.+.+.+++..+..+|++||. ...+...|.+.|+|+++.+++.+++- ..++-.-.|
T Consensus       328 -------lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv-svqseisac  399 (550)
T KOG4224|consen  328 -------LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV-SVQSEISAC  399 (550)
T ss_pred             -------ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh-hHHHHHHHH
Confidence                   489999999999999998777899999999999998 56799999999999999999998643 223334444


Q ss_pred             HHHH
Q 016639          379 CSLL  382 (385)
Q Consensus       379 ~~~L  382 (385)
                      ++.|
T Consensus       400 ~a~L  403 (550)
T KOG4224|consen  400 IAQL  403 (550)
T ss_pred             HHHH
Confidence            4443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.9e-18  Score=166.70  Aligned_cols=309  Identities=14%  Similarity=0.178  Sum_probs=236.3

Q ss_pred             cccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCCCCCccCCCCCCCCCCc
Q 016639           40 KDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLSGIVKCVPGESSLKDN  118 (385)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdLsni~~~~~~~~~~~~~  118 (385)
                      +-.+-|+-.||.-.|-.++-+---||......|-+|.++-.    --++++--.+. -.-|..|+|..-......--   
T Consensus        50 raltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epv----l~llqs~d~~Iq~aa~~alGnlAVn~enk~li---  122 (550)
T KOG4224|consen   50 RALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPV----LALLQSCDKCIQCAAGEALGNLAVNMENKGLI---  122 (550)
T ss_pred             chheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHhCcchhhhhhhhhhhccceeccCCceEE---
Confidence            34567888999999977765545566666666666654311    11112222222 22466777774332111000   


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639          119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK  198 (385)
Q Consensus       119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~  198 (385)
                      .-+.-|+-|..-....       .-+.++.++.++..+..-   .+||.-++..|++.+|..|-++   .|..++.+++.
T Consensus       123 v~l~Gl~~Li~qmmtd-------~vevqcnaVgCitnLaT~---d~nk~kiA~sGaL~pltrLaks---kdirvqrnatg  189 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTD-------GVEVQCNAVGCITNLATF---DSNKVKIARSGALEPLTRLAKS---KDIRVQRNATG  189 (550)
T ss_pred             EeccChHHHHHHhcCC-------CcEEEeeehhhhhhhhcc---ccchhhhhhccchhhhHhhccc---chhhHHHHHHH
Confidence            0112244444444333       557888999999999885   7789999999999999997666   48889999999


Q ss_pred             HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHccCChH
Q 016639          199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK--IDELILEILSRQRND  276 (385)
Q Consensus       199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G--~i~~Lv~lL~~~~~~  276 (385)
                      +|.+|++..++++.++.+||+|+|+.+|+.  .+.+++..++.+|++++. ++.+|..+++++  +++.||.+|+.+++.
T Consensus       190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s--~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~k  266 (550)
T KOG4224|consen  190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKS--GDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDK  266 (550)
T ss_pred             HHHHhhhhhhhhhhhhccCCchhhhhhhcc--CChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChH
Confidence            999999998889999999999999999996  588999999999999985 678999999998  999999999999998


Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcH
Q 016639          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI  356 (385)
Q Consensus       277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl  356 (385)
                      ++-.|.-+|++|+.+...          ++.|++.|++|.++++|++..-+.++..+ ..++++++.+-+-.-|++.|-+
T Consensus       267 vkcqA~lALrnlasdt~Y----------q~eiv~ag~lP~lv~Llqs~~~plilasV-aCIrnisihplNe~lI~dagfl  335 (550)
T KOG4224|consen  267 VKCQAGLALRNLASDTEY----------QREIVEAGSLPLLVELLQSPMGPLILASV-ACIRNISIHPLNEVLIADAGFL  335 (550)
T ss_pred             HHHHHHHHHhhhcccchh----------hhHHHhcCCchHHHHHHhCcchhHHHHHH-HHHhhcccccCcccceecccch
Confidence            888999999999987654          45599999999999999885445454443 3589999999999999999999


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          357 DALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .+|+++|+. .+.  +++.-.+.+.||+|
T Consensus       336 ~pLVrlL~~-~dn--EeiqchAvstLrnL  361 (550)
T KOG4224|consen  336 RPLVRLLRA-GDN--EEIQCHAVSTLRNL  361 (550)
T ss_pred             hHHHHHHhc-CCc--hhhhhhHHHHHHHH
Confidence            999999986 333  48999999999986

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.54  E-value=9.2e-13  Score=140.39  Aligned_cols=200  Identities=14%  Similarity=0.167  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH
Q 016639          146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI  225 (385)
Q Consensus       146 ~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l  225 (385)
                      ++-++..|-+++.   ++....-..+.|.++.|+.+|.+   ++.+++..++..|..|+...+++..+.+.|.++.|.++
T Consensus       266 lrv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr---~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  266 LRVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDR---ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence            3344445566654   67778888999999999999987   47889999999999999888778899999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHH
Q 016639          226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA  305 (385)
Q Consensus       226 L~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a  305 (385)
                      |.+  ++.+++..++++|.|++. +.++|..+++.|++|.|+.+|...+  ...-+...|.+|+.+|+.|.         
T Consensus       340 l~s--~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~---------  405 (708)
T PF05804_consen  340 LPS--ENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS---------  405 (708)
T ss_pred             hcC--CCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH---------
Confidence            986  467899999999999875 6779999999999999999998765  34558899999999998775         


Q ss_pred             HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       306 ~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                       ++...++++.|+++|-.++++.+..++.+++.||+.+..+++.|.+.||++.|++..-+.
T Consensus       406 -~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~  465 (708)
T PF05804_consen  406 -MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT  465 (708)
T ss_pred             -HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc
Confidence             477789999999998887666666788999999999999999999999999998766553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.42  E-value=2.9e-11  Score=128.98  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=183.9

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      ..+..|...++..       +.+.+..++..|..++-   ..+|+..+++.|++|.|+.++.+   ++..++..+++.|-
T Consensus       290 ~iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi---~~ENK~~m~~~giV~kL~kLl~s---~~~~l~~~aLrlL~  356 (708)
T PF05804_consen  290 GIVSLLVKCLDRE-------NEELLILAVTFLKKLSI---FKENKDEMAESGIVEKLLKLLPS---ENEDLVNVALRLLF  356 (708)
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence            3566777777654       77888899999999987   58899999999999999999987   46789999999999


Q ss_pred             HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHH
Q 016639          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS  280 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~  280 (385)
                      ||+.+.+.+..+++.|.+|.|+.+|.+.    .....++.+|.+++ .++++|..|...+.+|.|+.+|-.++. .+..+
T Consensus       357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS-~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e  431 (708)
T PF05804_consen  357 NLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLS-MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE  431 (708)
T ss_pred             HhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhc-cCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence            9999988899999999999999999752    34445788899987 478899999999999999998766544 67778


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDAL  359 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~L  359 (385)
                      +.+.+.||+.+.          .++..+.+.||++.|++..-...++-    ++..++|++.++ .....+.  +-+..|
T Consensus       432 liaL~iNLa~~~----------rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L  495 (708)
T PF05804_consen  432 LIALLINLALNK----------RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDL  495 (708)
T ss_pred             HHHHHHHHhcCH----------HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHH
Confidence            999999999754          45667888899999999887754542    456889999887 4444444  466677


Q ss_pred             HHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          360 LRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       360 v~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.++... +  +.+..-+|++.|.||
T Consensus       496 ~~~v~~~-~--~ee~~vE~LGiLaNL  518 (708)
T PF05804_consen  496 AKIVSSG-D--SEEFVVECLGILANL  518 (708)
T ss_pred             HHHhhcC-C--cHHHHHHHHHHHHhc
Confidence            7776552 3  448999999999986

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.34  E-value=1.5e-10  Score=121.80  Aligned_cols=223  Identities=17%  Similarity=0.140  Sum_probs=176.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc---chhHhhCCC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFRTGGG  218 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~---~~~i~~~gg  218 (385)
                      ++..+..+..-+..+|.+  +..-+..+-+.|+|+.||.+|.+   ...+++..|+++|-||..|...   +-.|.+.+|
T Consensus       246 ~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~---~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~G  320 (717)
T KOG1048|consen  246 DPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDH---RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNG  320 (717)
T ss_pred             ChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcC---CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCC
Confidence            667888999999999998  88889999999999999999998   4789999999999999987554   357789999


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------------------------------------------
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASAT--------------------------------------------------  248 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~--------------------------------------------------  248 (385)
                      ++.++++|+.- .|.++......+++|+.+                                                  
T Consensus       321 v~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLR  399 (717)
T KOG1048|consen  321 VPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLR  399 (717)
T ss_pred             hHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhc
Confidence            99999999852 233433333333333221                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q 016639          249 --------------------------------------------------------------------------------  248 (385)
Q Consensus       249 --------------------------------------------------------------------------------  248 (385)
                                                                                                      
T Consensus       400 NlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~  479 (717)
T KOG1048|consen  400 NLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA  479 (717)
T ss_pred             cccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------------CC----hhhHH
Q 016639          249 ---------------------------------------------------------------------GN----EVVKE  255 (385)
Q Consensus       249 ---------------------------------------------------------------------~~----e~nr~  255 (385)
                                                                                           +.    +..++
T Consensus       480 ~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~  559 (717)
T KOG1048|consen  480 ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG  559 (717)
T ss_pred             cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh
Confidence                                                                                 00    11133


Q ss_pred             HH-HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCC-----HHH
Q 016639          256 SY-MELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-----SPS  329 (385)
Q Consensus       256 ~i-v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~-----~~v  329 (385)
                      .| .+..++++|+++|+.++..|++.+|.+|+||+.|-.+|..          |. .++|+-|++.|..+..     .++
T Consensus       560 ~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~l----------ig-k~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  560 AVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKEL----------IG-KYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             hhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhh----------hh-cchHHHHHHhCcCCCCCcCchHHH
Confidence            44 5677899999999999889999999999999998887753          33 6789999999988654     478


Q ss_pred             HHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          330 LISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       330 ~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +..+|.+|.++...+ ++...+.+.+|+++|+.+.++ ..+.  .+.|.++.+|-.
T Consensus       629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s-~~S~--k~~kaAs~vL~~  681 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS-QHSP--KEFKAASSVLDV  681 (717)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc-cCCH--HHHHHHHHHHHH
Confidence            899999999998665 899999999999999888777 4444  789999888753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.28  E-value=9.5e-11  Score=96.71  Aligned_cols=116  Identities=19%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             HHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639          169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA  247 (385)
Q Consensus       169 ~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (385)
                      +.+.|+++.|+++|++.   +..+...++++|++++.+.+. ...+++.|+++.++++|.+  ++..++..++++|++++
T Consensus         3 ~~~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~   77 (120)
T cd00020           3 VIQAGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLA   77 (120)
T ss_pred             HHHcCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHc
Confidence            56889999999999874   688999999999999988544 5788889999999999986  57899999999999999


Q ss_pred             cCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          248 TGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       248 ~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ...+..+..+.+.|+++.|+++|...+..+.+.++|+|++|+
T Consensus        78 ~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          78 AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             cCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            888788888889999999999999988899999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.24  E-value=2.8e-10  Score=93.84  Aligned_cols=118  Identities=18%  Similarity=0.184  Sum_probs=103.4

Q ss_pred             hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639          212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP  291 (385)
Q Consensus       212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~  291 (385)
                      .+++.|+++.++++|.+.  +..+...++++|.+++...+.++..+++.|+++.++.+|...+..+++.++|+|++|+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            467889999999999864  578999999999999998899999999999999999999998889999999999999975


Q ss_pred             CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       292 Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      ..         .....+.+.|+++.|+++|... +..+.+.++++|.+|+
T Consensus        80 ~~---------~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~  119 (120)
T cd00020          80 PE---------DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA  119 (120)
T ss_pred             cH---------HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence            53         2234566889999999999885 6778999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.22  E-value=7.4e-10  Score=105.49  Aligned_cols=192  Identities=12%  Similarity=0.137  Sum_probs=154.2

Q ss_pred             HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639          170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (385)
Q Consensus       170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (385)
                      .+.+-++.|+.+|+..  .|+.++..++.++++.+.-+.++..+.+.||++.+..+|.+  +++.+...|++++.+++. 
T Consensus         9 l~~~~l~~Ll~lL~~t--~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~-   83 (254)
T PF04826_consen    9 LEAQELQKLLCLLEST--EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSV-   83 (254)
T ss_pred             cCHHHHHHHHHHHhcC--CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCC-
Confidence            4556789999999975  58999999999999976655445667789999999999986  578999999999999864 


Q ss_pred             ChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH
Q 016639          250 NEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS  327 (385)
Q Consensus       250 ~e~nr~~iv~~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~  327 (385)
                      +.+|+..| +. .++.+.+.+.++  +.+++..+..+|++|+..++.+.          .++  +.++.++.+|..+ +.
T Consensus        84 ~~en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~----------~l~--~~i~~ll~LL~~G-~~  148 (254)
T PF04826_consen   84 NDENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH----------MLA--NYIPDLLSLLSSG-SE  148 (254)
T ss_pred             ChhhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh----------hHH--hhHHHHHHHHHcC-Ch
Confidence            56676665 33 567777665554  33899999999999998887643          243  4799999999997 66


Q ss_pred             HHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       328 ~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      .++..++.+|.+|+.++.+...+..++++..++.++...   .++++...++.++.|
T Consensus       149 ~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~---~~~~~l~~~l~~~~n  202 (254)
T PF04826_consen  149 KTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS---ESKENLLRVLTFFEN  202 (254)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC---CccHHHHHHHHHHHH
Confidence            688899999999999999999999999999999998873   334677777766654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.19  E-value=1.4e-10  Score=122.10  Aligned_cols=157  Identities=15%  Similarity=0.154  Sum_probs=126.5

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhh
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~  298 (385)
                      ++-.+..|.+  .++.++..|...+.++|.+++..|..+-+.|+|+.||.+|.+...+|+++|||+||||..+++.+   
T Consensus       235 lpe~i~mL~~--q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~---  309 (717)
T KOG1048|consen  235 LPEVISMLMS--QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD---  309 (717)
T ss_pred             cHHHHHHHhc--cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc---
Confidence            5667777774  57889999999999999999999999999999999999999999999999999999998544321   


Q ss_pred             hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH-HHhcC---------C
Q 016639          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRC-IDDSG---------L  368 (385)
Q Consensus       299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l-l~~~~---------~  368 (385)
                          +|.-.|.++|||+.++++|+.-.|.++.+.+..+|+||..++..|..|.. .++..|-+. +.-+.         .
T Consensus       310 ----~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~  384 (717)
T KOG1048|consen  310 ----SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRK  384 (717)
T ss_pred             ----ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccc
Confidence                23335889999999999999855888999999999999999888887776 455555433 33322         1


Q ss_pred             cCcHHHHHHHHHHHhcC
Q 016639          369 QGNKTVARICCSLLSKV  385 (385)
Q Consensus       369 ~~~~~v~k~a~~~Lr~l  385 (385)
                      ...++|.+.+-.+|||+
T Consensus       385 ~~~~~vf~n~tgcLRNl  401 (717)
T KOG1048|consen  385 AEDSTVFRNVTGCLRNL  401 (717)
T ss_pred             cccceeeehhhhhhccc
Confidence            12347888888888875

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=8.2e-10  Score=121.23  Aligned_cols=308  Identities=13%  Similarity=0.147  Sum_probs=208.6

Q ss_pred             hHHHHHHHHHhh----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCC-CCCchHHHHHHHHHHHhh-------
Q 016639           65 SQEAFDEVVKEN----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPLIQSLERLKQLDL-------  132 (385)
Q Consensus        65 sqetfd~~v~en----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~-~~~~~v~~al~~L~~~l~-------  132 (385)
                      ++|+--+.++..    +-...-.|+++.++|-...   +-.|-|||..-|.... .-..-++..|+.++..+.       
T Consensus       224 s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A---~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lq  300 (2195)
T KOG2122|consen  224 SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRA---SAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQ  300 (2195)
T ss_pred             CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHH---HHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455533444444    2222334444444444332   1346688888665311 122345566665555443       


Q ss_pred             cCCC-CCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc------CCc---HhHHHHHHHHHHH
Q 016639          133 NSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGS---KRVLDSCLKTMAL  202 (385)
Q Consensus       133 ~~~~-~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~------~~d---~~vl~~Al~aLa~  202 (385)
                      ..++ .-...+...++.|+-.|-.++-   ++++|..+-+.|++.+|-+|+.-..      .+|   ..+...|..+|+|
T Consensus       301 ar~~~~apa~~~H~lcaA~~~lMK~SF---DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTN  377 (2195)
T KOG2122|consen  301 ARGPAIAPASDEHQLCAALCTLMKLSF---DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTN  377 (2195)
T ss_pred             hcCCCCCCcccchhhHHHHHHHHHhhc---cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence            2222 2222344566677777777766   7999999999999999888774211      122   2567788999999


Q ss_pred             HhcCCccchhH--hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCCChHHHHHH-HccCChHHH
Q 016639          203 LVHDVQSTETF--RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESY-MELKIDELILEI-LSRQRNDSI  278 (385)
Q Consensus       203 L~~~~~~~~~i--~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i-v~~G~i~~Lv~l-L~~~~~~v~  278 (385)
                      |+.|+..+...  -..|-++.||..|..  ...+++.-.+.+|+|+.=.-+.|-..+ -+.|-+..|..+ |+.++...+
T Consensus       378 LTFGDv~NKa~LCs~rgfMeavVAQL~s--~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTL  455 (2195)
T KOG2122|consen  378 LTFGDVANKATLCSQRGFMEAVVAQLIS--APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTL  455 (2195)
T ss_pred             cccccccchhhhhhhhhHHHHHHHHHhc--ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchH
Confidence            99997664333  356789999999986  345777777788888766666664444 478888888776 677776789


Q ss_pred             HHHHHHHHHhc-CCCccchhhhhc----------------------------------------hhHHHHHHhcCcHHHH
Q 016639          279 QSLYDAIRVLL-TPDDDQVVASQV----------------------------------------YGYARRFAKIGIARAL  317 (385)
Q Consensus       279 k~A~~aL~~Lt-~~Dd~rv~~g~a----------------------------------------~~~a~~I~e~Ggi~~L  317 (385)
                      |....+|+||+ .--++|.+|=..                                        -+|...+.++++|..|
T Consensus       456 KavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~L  535 (2195)
T KOG2122|consen  456 KAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTL  535 (2195)
T ss_pred             HHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHH
Confidence            99999999995 333444433220                                        1444444578999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          318 VHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       318 v~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +..|+++. -.++.++|++|+||..++ +-.+.+-+.|++..|..++.+    .|+.++.-+.++||||
T Consensus       536 LQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS----KhkMIa~GSaaALrNL  599 (2195)
T KOG2122|consen  536 LQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS----KHKMIAMGSAAALRNL  599 (2195)
T ss_pred             HHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh----hhhhhhhhHHHHHHHH
Confidence            99999873 347799999999999886 888999999999999999875    3459999999999986

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.16  E-value=2.7e-09  Score=105.75  Aligned_cols=243  Identities=18%  Similarity=0.243  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC----CcHhHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSCL  197 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~----~d~~vl~~Al  197 (385)
                      .+++.|++..++.       +.+...+..+.|.+.|.-  +.++|..+-+.||-..++.+|+..+.    +..+...-++
T Consensus        87 ~~le~Lrq~psS~-------d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~  157 (604)
T KOG4500|consen   87 EALELLRQTPSSP-------DTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAF  157 (604)
T ss_pred             HHHHHHHhCCCCC-------cccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHH
Confidence            5666666666553       677888899999999996  99999999999997777777765442    2346777788


Q ss_pred             HHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHH----------------------------HHHH---------
Q 016639          198 KTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEI----------------------------LNSG---------  239 (385)
Q Consensus       198 ~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v----------------------------~~~a---------  239 (385)
                      ..|.|-+.|.+. +..+++.|.++.|..++--+..+.+.                            .-..         
T Consensus       158 g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~  237 (604)
T KOG4500|consen  158 GVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR  237 (604)
T ss_pred             HHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc
Confidence            889887777655 56778888888776665443332221                            1111         


Q ss_pred             -------HHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--------HHHHHHHHHHHHhcCCCccchhhhhchhH
Q 016639          240 -------FAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYGY  304 (385)
Q Consensus       240 -------~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~  304 (385)
                             +-++.. ...|+..|-.+++.|.++.++++++....        ...+-+|....-|.++||..         
T Consensus       238 ~d~~eM~feila~-~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM---------  307 (604)
T KOG4500|consen  238 EDIDEMIFEILAK-AAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM---------  307 (604)
T ss_pred             cchhhHHHHHHHH-HhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH---------
Confidence                   122222 22455566677888999999999987433        34445777777777777632         


Q ss_pred             HHHHHhcC-cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh-cCCcCcHHHHHHHHHHH
Q 016639          305 ARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLL  382 (385)
Q Consensus       305 a~~I~e~G-gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~-~~~~~~~~v~k~a~~~L  382 (385)
                       .++...+ .++-++..+++. |...+-....++.|+|.++.+|..+++.|-+.+|++++.. +...+|-+++..||++|
T Consensus       308 -q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL  385 (604)
T KOG4500|consen  308 -QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL  385 (604)
T ss_pred             -HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence             1344444 577788888774 5567777888999999999999999999999999998655 77778889999999999


Q ss_pred             hcC
Q 016639          383 SKV  385 (385)
Q Consensus       383 r~l  385 (385)
                      |||
T Consensus       386 Rnl  388 (604)
T KOG4500|consen  386 RNL  388 (604)
T ss_pred             Hhc
Confidence            996

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.16  E-value=6.4e-09  Score=99.07  Aligned_cols=192  Identities=14%  Similarity=0.135  Sum_probs=157.7

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      +.++.|...+....      ++.....++..+...+.   .+.++..+.+.|+++.+..+|..   +++.+...|+++|.
T Consensus        12 ~~l~~Ll~lL~~t~------dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~---p~~~vr~~AL~aL~   79 (254)
T PF04826_consen   12 QELQKLLCLLESTE------DPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLND---PNPSVREKALNALN   79 (254)
T ss_pred             HHHHHHHHHHhcCC------ChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCC---CChHHHHHHHHHHH
Confidence            56889999988542      77888888999999765   79999999999999999999998   48899999999999


Q ss_pred             HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      |++.+.+.+..+ +. .++.+++.+.++.-+.+++..++++|.+++..++ ....+  .+.++.++.+|.+++..++..+
T Consensus        80 Nls~~~en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~v  154 (254)
T PF04826_consen   80 NLSVNDENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQV  154 (254)
T ss_pred             hcCCChhhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHH
Confidence            998876554433 32 5777888777666788999999999999976544 44444  3589999999999988888889


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      ..+|.||+.+.+          ..+.+..+.++..++.++....+.+++..+.....|+
T Consensus       155 Lk~L~nLS~np~----------~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni  203 (254)
T PF04826_consen  155 LKVLVNLSENPD----------MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI  203 (254)
T ss_pred             HHHHHHhccCHH----------HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence            999999987654          3567888889999999998865677888888888888

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.89  E-value=7.6e-08  Score=94.42  Aligned_cols=217  Identities=7%  Similarity=0.013  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHH------cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK------NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT  215 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~------~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~  215 (385)
                      +.+.+...|.-+.+++..  ++.....+..      ...+.+++.++.+   +|.-+...|+..|+.++...+.+..-..
T Consensus        70 ~~d~v~yvL~li~dll~~--~~~~~~~~~~~~~~~~~~~~~~fl~ll~~---~D~~i~~~a~~iLt~Ll~~~~~~~~~~~  144 (312)
T PF03224_consen   70 NDDTVQYVLTLIDDLLSD--DPSRVELFLELAKQDDSDPYSPFLKLLDR---NDSFIQLKAAFILTSLLSQGPKRSEKLV  144 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH---SSSSHHHHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHHTSTTT--HHHH
T ss_pred             cHHHHHHHHHHHHHHHhc--CHHHHHHHHHhcccccchhHHHHHHHhcC---CCHHHHHHHHHHHHHHHHcCCccccchH
Confidence            678899999999999996  7766665544      1257888887776   5888999999999999876554333323


Q ss_pred             CCCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH-----ccCCh--HHHHHHHHHHH
Q 016639          216 GGGPKLLVNILIDGNE--DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-----SRQRN--DSIQSLYDAIR  286 (385)
Q Consensus       216 ~ggi~~Lv~lL~~~~~--~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL-----~~~~~--~v~k~A~~aL~  286 (385)
                      .+.++.+++.|++...  +.+++..++.++.++. ..+..|..|.+.|+++.|+.+|     .++..  ..+=+++-+++
T Consensus       145 ~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW  223 (312)
T PF03224_consen  145 KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW  223 (312)
T ss_dssp             HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence            5667888999886433  3445688889999886 7899999999999999999999     22222  55556999999


Q ss_pred             HhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH--HHHHHHHcCcHHHHHHHHH
Q 016639          287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE--ICKSVAENGGIDALLRCID  364 (385)
Q Consensus       287 ~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e--~c~~I~e~GGl~~Lv~ll~  364 (385)
                      -|+++.++          +..+.+.+.|+.|+++++......+.+-++++|.||...+.  ++..++.+|+++.+..+..
T Consensus       224 lLSF~~~~----------~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  224 LLSFEPEI----------AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHTTSHHH----------HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHhcCHHH----------HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99987654          44577888999999999997666788999999999998765  9999999999998866655


Q ss_pred             hcCCcCcHHHHH
Q 016639          365 DSGLQGNKTVAR  376 (385)
Q Consensus       365 ~~~~~~~~~v~k  376 (385)
                      ..-.+  .++..
T Consensus       294 rk~~D--edl~e  303 (312)
T PF03224_consen  294 RKWSD--EDLTE  303 (312)
T ss_dssp             S--SS--HHHHH
T ss_pred             CCCCC--HHHHH
Confidence            43333  35543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.83  E-value=4.4e-07  Score=94.74  Aligned_cols=208  Identities=13%  Similarity=0.097  Sum_probs=167.0

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~  220 (385)
                      +.+.+..++..|..+.+.  . .-...  ..+..+.|...|.+   .++.+...++++|..+....+. .+.+.+.+.++
T Consensus        51 ~~e~v~~~~~iL~~~l~~--~-~~~~l--~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   51 NREQVELICDILKRLLSA--L-SPDSL--LPQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             ChHHHHHHHHHHHHHHhc--c-CHHHH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            567777777888888775  2 21222  44567778888887   4889999999999998876544 35667889999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhh
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ  300 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~  300 (385)
                      .++.+|.+  ++.++...|+.+|..++. ++...+.+++.+++..|..++...++.++-.++.++..++         +.
T Consensus       123 ~i~~~L~~--~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~---------~~  190 (503)
T PF10508_consen  123 LIIQCLRD--PDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA---------SH  190 (503)
T ss_pred             HHHHHHcC--CcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH---------hc
Confidence            99999985  688999999999999985 6667778889999999999998866556667888888885         33


Q ss_pred             chhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639          301 VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG  370 (385)
Q Consensus       301 a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~  370 (385)
                      +.+....+.+.|.++.++..|+. .|.-++.+++.+|..||..+...+-+++.|.++.|.+.+.+..+++
T Consensus       191 S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp  259 (503)
T PF10508_consen  191 SPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP  259 (503)
T ss_pred             CHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC
Confidence            44666677789999999999988 4666788999999999999999999999999999999998754443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.77  E-value=1.1e-06  Score=89.27  Aligned_cols=235  Identities=12%  Similarity=0.085  Sum_probs=169.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +.+.+.-++.+|..+.+.   +..|..+.++++++.|+.+|+... .+..++-.++-+++-|+...+........+-|+.
T Consensus       157 ~~~~~~~~v~~L~~LL~~---~~~R~~f~~~~~v~~L~~~L~~~~-~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~  232 (429)
T cd00256         157 NNDYVQTAARCLQMLLRV---DEYRFAFVLADGVPTLVKLLSNAT-LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQD  232 (429)
T ss_pred             CcchHHHHHHHHHHHhCC---chHHHHHHHccCHHHHHHHHhhcc-ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHH
Confidence            345667778899999984   889999999999999999998642 2557888888888888766543344456788999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHH--------HH
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNE------VVKESYMELKIDELILEILSRQ-RNDSIQSLYDA--------IR  286 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~a--------L~  286 (385)
                      ++++++.. ...+|++-++.++.|+...+.      .....+++.|+++.+-.+..++ +++-+.+....        +.
T Consensus       233 l~~i~k~s-~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k  311 (429)
T cd00256         233 LSDILKES-TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ  311 (429)
T ss_pred             HHHHHHhh-hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999974 578999999999999987541      2334455666665554444332 44333332222        34


Q ss_pred             HhcCCCccchhhhhc--------------hhHHHHHHhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHH
Q 016639          287 VLLTPDDDQVVASQV--------------YGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVND-EICKS  349 (385)
Q Consensus       287 ~Lt~~Dd~rv~~g~a--------------~~~a~~I~e~G--gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~  349 (385)
                      .||.=|..+.+.-..              .+|++.|-+.+  .++.|+++|....|+.++.-||.=++.++..- +-+..
T Consensus       312 ~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i  391 (429)
T cd00256         312 DLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDV  391 (429)
T ss_pred             HcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHH
Confidence            455555555433221              28999998654  57999999976557778888899898888764 56677


Q ss_pred             HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       350 I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.+.||=+.++++|.+    +|.+|.++|+.++-+|
T Consensus       392 ~~~lg~K~~vM~Lm~h----~d~~Vr~eAL~avQkl  423 (429)
T cd00256         392 VEQLGGKQRVMRLLNH----EDPNVRYEALLAVQKL  423 (429)
T ss_pred             HHHcCcHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence            7789999999999974    5568999999887653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.2e-07  Score=95.18  Aligned_cols=232  Identities=13%  Similarity=0.089  Sum_probs=183.0

Q ss_pred             hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639          119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK  198 (385)
Q Consensus       119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~  198 (385)
                      |+-..+..|...+...      .+.|-+..|+++|.++|..  -|....++++.++||.|++-|...  ...++.+.+|.
T Consensus       208 pv~slvp~Lv~LL~~E------~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~I--eyiDvAEQ~Lq  277 (1051)
T KOG0168|consen  208 PVKSLVPVLVALLSHE------HNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTI--EYIDVAEQSLQ  277 (1051)
T ss_pred             cHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhh--hhhHHHHHHHH
Confidence            5555566677777643      2789999999999999998  899899999999999999988765  46788999999


Q ss_pred             HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHccCChHH
Q 016639          199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSRQRNDS  277 (385)
Q Consensus       199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv~lL~~~~~~v  277 (385)
                      ||-.|....+  .+++.+||+...+..|...+  ..+|+.|+...+|+|..-. +-=.-||+  .+|.|..+|..++...
T Consensus       278 ALE~iSR~H~--~AiL~AG~l~a~LsylDFFS--i~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~  351 (1051)
T KOG0168|consen  278 ALEKISRRHP--KAILQAGALSAVLSYLDFFS--IHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKP  351 (1051)
T ss_pred             HHHHHHhhcc--HHHHhcccHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchh
Confidence            9999887543  79999999999999998763  6778899999999886422 22234554  8999999999998889


Q ss_pred             HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcC-hHHHHHHHHc
Q 016639          278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---SSPSLISASIALKAVAVN-DEICKSVAEN  353 (385)
Q Consensus       278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~---~~~v~~~a~~aL~~La~~-~e~c~~I~e~  353 (385)
                      +..+|-++..++.+      |....+--.++..+|.|.-...||....   +..+..-..++|+.++.+ +.......+.
T Consensus       352 ies~~ic~~ri~d~------f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~  425 (1051)
T KOG0168|consen  352 IESVCICLTRIADG------FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKL  425 (1051)
T ss_pred             HHHHHHHHHHHHHh------cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHh
Confidence            99999999888631      3333345557888999999999997743   234556677888889888 5677888889


Q ss_pred             CcHHHHHHHHHhcCCcCcH
Q 016639          354 GGIDALLRCIDDSGLQGNK  372 (385)
Q Consensus       354 GGl~~Lv~ll~~~~~~~~~  372 (385)
                      +..+.+.++|..+....|+
T Consensus       426 ~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  426 DIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hHHHHHHHHHhccCcCccc
Confidence            9999999999887666553

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.68  E-value=6.7e-06  Score=85.94  Aligned_cols=185  Identities=11%  Similarity=0.039  Sum_probs=148.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      ++....-+++.|......  +......+.+.+.++.++.++..   .|..+...|.++|..|+......+.+++.+++..
T Consensus        90 ~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~  164 (503)
T PF10508_consen   90 SPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSK  164 (503)
T ss_pred             CHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHH
Confidence            677777888888888875  55556677889999999999987   5889999999999999876554566778899999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a  301 (385)
                      |..++..  .+..+....+.++.+++..+++....+++.|.++.++..|.+.+.-++.+++..|..|+..          
T Consensus       165 L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~----------  232 (503)
T PF10508_consen  165 LKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET----------  232 (503)
T ss_pred             HHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC----------
Confidence            9999975  3567888999999999999999999999999999999999995556777899999999852          


Q ss_pred             hhHHHHHHhcCcHHHHHHHHhcCC-CH---H-HHHHHHHHHHHhhcC
Q 016639          302 YGYARRFAKIGIARALVHSLHAGL-SS---P-SLISASIALKAVAVN  343 (385)
Q Consensus       302 ~~~a~~I~e~Ggi~~Lv~lL~~~~-~~---~-v~~~a~~aL~~La~~  343 (385)
                      .....+|.+.|+++.|++.+.... |+   . .+-.......+++..
T Consensus       233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence            244678899999999999998765 44   1 122333455566653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.66  E-value=8.4e-07  Score=98.30  Aligned_cols=256  Identities=14%  Similarity=0.168  Sum_probs=176.0

Q ss_pred             hhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHH-HHHcC----------------CCCCCCccCCCCCCCCCCchHH-
Q 016639           60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQT-LSLQG----------------VDLSGIVKCVPGESSLKDNPLI-  121 (385)
Q Consensus        60 ~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~q-fe~QG----------------vdLsni~~~~~~~~~~~~~~v~-  121 (385)
                      |...|=-..|||=-|--|.+++  .-+||.+.|+- .+..|                ..|.|+.-+     +...+.-+ 
T Consensus       318 A~~~lMK~SFDEEhR~aM~ELG--~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFG-----Dv~NKa~LC  390 (2195)
T KOG2122|consen  318 ALCTLMKLSFDEEHRHAMNELG--GLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFG-----DVANKATLC  390 (2195)
T ss_pred             HHHHHHHhhccHHHHHHHHHhh--hHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccc-----cccchhhhh
Confidence            4566777899999888898876  56889888876 46666                344455222     11112222 


Q ss_pred             ---HHHHHHHHHhhcCCCCCCcccHHHHHHH-HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHH
Q 016639          122 ---QSLERLKQLDLNSKDKFSDEDLNEMMGL-FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL  197 (385)
Q Consensus       122 ---~al~~L~~~l~~~~~~~~~~~~~~~~~a-l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al  197 (385)
                         .+++.+..-+.+        ..|++.+. ...|++++=. .+..-+..+.+.|-+..|+..-....  .+..+...|
T Consensus       391 s~rgfMeavVAQL~s--------~peeL~QV~AsvLRNLSWR-AD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavL  459 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLIS--------APEELLQVYASVLRNLSWR-ADSNMKKVLRETGSVTALAACALRNK--KESTLKAVL  459 (2195)
T ss_pred             hhhhHHHHHHHHHhc--------ChHHHHHHHHHHHHhcccc-ccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHH
Confidence               578888888876        34444443 4457777655 35666778899999999998643321  223344444


Q ss_pred             HHHHHHhcC-CccchhHh-hCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHH---HhcCChhhHHHHHhCCChHHHHHHH
Q 016639          198 KTMALLVHD-VQSTETFR-TGGGPKLLVNILIDG--NEDPEILNSGFAVVAA---SATGNEVVKESYMELKIDELILEIL  270 (385)
Q Consensus       198 ~aLa~L~~~-~~~~~~i~-~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~---~~~~~e~nr~~iv~~G~i~~Lv~lL  270 (385)
                      .+||||... .+++.+|- -.|++.+|+.+|.-.  ..--.|+..|-.+|+|   ..+.+|..||.+-+.+.|..|+..|
T Consensus       460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~L  539 (2195)
T KOG2122|consen  460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHL  539 (2195)
T ss_pred             HHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHh
Confidence            555555433 33344553 468899999999743  2334455555444444   3346899999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          271 SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       271 ~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                      ++|+.-++.|+|++|+||..-         ..+.+.+|...|+++-|..++++. ++-+..-...+|.||...
T Consensus       540 KS~SLTiVSNaCGTLWNLSAR---------~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  540 KSHSLTIVSNACGTLWNLSAR---------SPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhcceEEeecchhhhhhhhcC---------CHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcC
Confidence            999998999999999999742         336667889999999999999884 655556677788888543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.7e-06  Score=90.47  Aligned_cols=204  Identities=9%  Similarity=0.051  Sum_probs=157.0

Q ss_pred             ccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639          141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (385)
Q Consensus       141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi  219 (385)
                      +++..+.+++.+|++...- .+++.-..+.-.-.+|.|+.||+..  .+.++...|+++|++|+.--+. ...+++.++|
T Consensus       180 ~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E--~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aI  256 (1051)
T KOG0168|consen  180 SDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHE--HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAI  256 (1051)
T ss_pred             CChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhhccchhheeecccch
Confidence            4777888888888888764 2444333444456799999999975  4688999999999999976443 4678899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc---CCCccch
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL---TPDDDQV  296 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt---~~Dd~rv  296 (385)
                      |.+++=|..- +=.++...++.+|..+...|.   .+|.++|+|...+.-|.-.+..+|+.|.+...|.+   ..|+   
T Consensus       257 Pvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~---  329 (1051)
T KOG0168|consen  257 PVLLEKLLTI-EYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE---  329 (1051)
T ss_pred             HHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence            9998877542 345788888899988877665   67889999999999998888899999999999997   2333   


Q ss_pred             hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----hHHHHHHHHcCcHHHHHHHHHh
Q 016639          297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN----DEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       297 ~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~----~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                              -+.+++  .+|.|..+|+.+ ++..++.+|..+.+++-.    .+--+++...|-|.-+..++.-
T Consensus       330 --------f~~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  330 --------FHFVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             --------chHHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence                    234666  599999999886 666778888888888643    4555777788888777777654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.56  E-value=2.2e-06  Score=84.08  Aligned_cols=195  Identities=17%  Similarity=0.134  Sum_probs=134.8

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhC------CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTG------GGPKLLVNILIDGNEDPEILNSGFAVVAAS  246 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~  246 (385)
                      ....++.+|++. ..+.+++...+..+..|+.+.+.+ +.+.+.      .-...++++|.+  +|.-+...++..+..+
T Consensus        56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL  132 (312)
T ss_dssp             ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence            366778888775 236778888899999999887665 334331      135666776654  4888899999999998


Q ss_pred             hcCChhhHHHHHhCCChHHHHHHHccCC----hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh
Q 016639          247 ATGNEVVKESYMELKIDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (385)
Q Consensus       247 ~~~~e~nr~~iv~~G~i~~Lv~lL~~~~----~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~  322 (385)
                      +...+....... .+.++.++..|++..    .+++.-++.+|.+|...+..|.          .+.+.|+++.|..+|+
T Consensus       133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~----------~f~~~~~v~~l~~iL~  201 (312)
T PF03224_consen  133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ----------VFWKSNGVSPLFDILR  201 (312)
T ss_dssp             HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH----------HHHTHHHHHHHHHHHH
T ss_pred             HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH----------HHHhcCcHHHHHHHHH
Confidence            876554433322 567788888887632    2566779999999987666554          4778999999999993


Q ss_pred             -----cCC-CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          323 -----AGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       323 -----~~~-~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                           ... +..++=+++..++-|..+++++..+...+-++.|.++++...   -+.|.|-|++.||||
T Consensus       202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~---KEKvvRv~la~l~Nl  267 (312)
T PF03224_consen  202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI---KEKVVRVSLAILRNL  267 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHT
T ss_pred             hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc---cchHHHHHHHHHHHH
Confidence                 222 335566889999999999999999999999999999999854   348999999999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.50  E-value=6.1e-06  Score=82.42  Aligned_cols=213  Identities=15%  Similarity=0.130  Sum_probs=152.0

Q ss_pred             HHHHHHHHhcCCCChhhHHHHHH----cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHH
Q 016639          149 LFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLV  223 (385)
Q Consensus       149 al~~L~~lc~~~~~~~~r~~~~~----~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv  223 (385)
                      +-.++....+   ++-.|..+.+    +|+++.|.+...+   .|.++...++++|+|+|-+++. |..|.+.||-..++
T Consensus        62 qssC~A~~sk---~ev~r~~F~~~~I~a~~le~Lrq~psS---~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi  135 (604)
T KOG4500|consen   62 QSSCLADRSK---NEVERSLFRNYCIDAEALELLRQTPSS---PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI  135 (604)
T ss_pred             hHHHHHHHhh---hHHHHHHHHHHhhHHHHHHHHHhCCCC---CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence            3344555554   4555665544    4556666665555   3678999999999999987655 78899999999999


Q ss_pred             HHHhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHH-HHHHHHHhcCCCccch
Q 016639          224 NILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPDDDQV  296 (385)
Q Consensus       224 ~lL~~~~-----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~-A~~aL~~Lt~~Dd~rv  296 (385)
                      ++|+...     .+.+...-++.+|.|-..+++.-+..+++.|+++.|..++.-|-. ..+.+ ......+|..      
T Consensus       136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls------  209 (604)
T KOG4500|consen  136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS------  209 (604)
T ss_pred             hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH------
Confidence            9997643     345678888999999999999999999999999999999977633 22333 3333333321      


Q ss_pred             hhhhchhHHHHH-HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHH
Q 016639          297 VASQVYGYARRF-AKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA  375 (385)
Q Consensus       297 ~~g~a~~~a~~I-~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~  375 (385)
                       |  --++-.-+ ........++.+|.+..+++..+-.+..|...+-+++.|-.+++.|-++.++++++.+.+..++.-.
T Consensus       210 -~--~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~  286 (604)
T KOG4500|consen  210 -F--VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDM  286 (604)
T ss_pred             -H--HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHH
Confidence             0  00111112 2455677888888886566566667788888899999999999999999999999987666654443


Q ss_pred             H
Q 016639          376 R  376 (385)
Q Consensus       376 k  376 (385)
                      .
T Consensus       287 ~  287 (604)
T KOG4500|consen  287 L  287 (604)
T ss_pred             H
Confidence            3

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.3e-05  Score=78.63  Aligned_cols=147  Identities=15%  Similarity=0.190  Sum_probs=127.6

Q ss_pred             cccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCC
Q 016639          140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGG  218 (385)
Q Consensus       140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~gg  218 (385)
                      +.+++....++..|.+++.   +-+|..-+...||..+|+..+.+   .+..+...|.++|+....+++. ...+++.||
T Consensus        94 s~~le~ke~ald~Le~lve---~iDnAndl~~~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~  167 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE---DIDNANDLISLGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNPKSQEQVIELGA  167 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH---hhhhHHhHhhccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence            4488999999999999997   68999999999999999998887   4889999999999999888765 478899999


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHhcCCCc
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDD  293 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd  293 (385)
                      ++.|+..|.+ .++..+...++.+++.+...++.-...|-..+|...|..+|++.  +...++-+...+..|+..+.
T Consensus       168 L~~Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  168 LSKLLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHHHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            9999999995 45667778889999999989999999999999999999999995  44667778888998875443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.35  E-value=6.5e-07  Score=60.99  Aligned_cols=40  Identities=13%  Similarity=0.027  Sum_probs=37.7

Q ss_pred             ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       250 ~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      +++|++.|++.|++|+|+.+|++.+.+++++|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999888899999999999996

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5e-05  Score=74.56  Aligned_cols=166  Identities=20%  Similarity=0.194  Sum_probs=128.7

Q ss_pred             CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 016639          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv  267 (385)
                      .+.+-...|+..|-.++.+-|.-.+++..||..+++..|.+  .+.++...|+|+|..+...|+..++.+++.|+++.|+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            35667888899999988876666899999999999998875  6889999999999999999999999999999999999


Q ss_pred             HHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcChH
Q 016639          268 EILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDE  345 (385)
Q Consensus       268 ~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~e  345 (385)
                      ..|.+..+ .+...|..|+++|..+...         -...+...+|...|.++|.... +...+.-+...+..|...+.
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~---------g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKP---------GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcH---------HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            99987654 6778899999999754431         1234667888999999999964 55667778888888876543


Q ss_pred             HHHHHHHcCcHHHHHHHHH
Q 016639          346 ICKSVAENGGIDALLRCID  364 (385)
Q Consensus       346 ~c~~I~e~GGl~~Lv~ll~  364 (385)
                      .-..|...=|.+..+..+.
T Consensus       244 s~~d~~~~~~f~~~~~~l~  262 (342)
T KOG2160|consen  244 SDEDIASSLGFQRVLENLI  262 (342)
T ss_pred             hhhhHHHHhhhhHHHHHHh
Confidence            3333444444444443333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.26  E-value=8.1e-05  Score=74.33  Aligned_cols=246  Identities=13%  Similarity=0.039  Sum_probs=175.0

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      ....|+..+.++.      +.+.+.-+.++|..+.+   -+++|..+..++|+..|+..+.+. ..+-.++-..+-+++-
T Consensus       157 ~~~~l~~~l~~~~------~~~~~~~~~rcLQ~ll~---~~eyR~~~v~adg~~~l~~~l~s~-~~~~QlQYqsifciWl  226 (442)
T KOG2759|consen  157 YKGFLKEQLQSST------NNDYIQFAARCLQTLLR---VDEYRYAFVIADGVSLLIRILAST-KCGFQLQYQSIFCIWL  226 (442)
T ss_pred             HHHHHHHHHhccC------CCchHHHHHHHHHHHhc---CcchhheeeecCcchhhHHHHhcc-CcchhHHHHHHHHHHH
Confidence            4445555555421      55778888999999998   599999999999999999999522 2466777777788887


Q ss_pred             HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHhCCChHHHHHHHcc--CC
Q 016639          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVKESYMELKIDELILEILSR--QR  274 (385)
Q Consensus       203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr~~iv~~G~i~~Lv~lL~~--~~  274 (385)
                      |+-.....+.+...+-|+.|.++++.. ...+|.+-.+.+++|++.+.+      +....++. +.++..++.|..  .+
T Consensus       227 LtFn~~~ae~~~~~~li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkys  304 (442)
T KOG2759|consen  227 LTFNPHAAEKLKRFDLIQDLSDIVKES-TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYS  304 (442)
T ss_pred             hhcCHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCC
Confidence            776554445566678899999999874 467899999999999998874      22334444 445555566644  34


Q ss_pred             hHHHHHHHHHHH--------HhcCCCccchhh--hh-----c-------hhHHHHHHhc--CcHHHHHHHHhcCCCHHHH
Q 016639          275 NDSIQSLYDAIR--------VLLTPDDDQVVA--SQ-----V-------YGYARRFAKI--GIARALVHSLHAGLSSPSL  330 (385)
Q Consensus       275 ~~v~k~A~~aL~--------~Lt~~Dd~rv~~--g~-----a-------~~~a~~I~e~--Ggi~~Lv~lL~~~~~~~v~  330 (385)
                      ++-+.+...-|.        .|+.-|+...+.  |+     .       ++|+.++-+.  -.++.|+.+|++..|+.++
T Consensus       305 DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL  384 (442)
T KOG2759|consen  305 DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIIL  384 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCcee
Confidence            433333332222        244444433321  11     1       3999999865  4799999999997678788


Q ss_pred             HHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          331 ISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       331 ~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      .-||.=+..... .++....+...||=+.++++|..    +|.+|-..|+.++-+
T Consensus       385 ~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh----~d~~Vry~ALlavQ~  435 (442)
T KOG2759|consen  385 CVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH----EDPEVRYHALLAVQK  435 (442)
T ss_pred             ehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence            888888888765 47999999999999999999953    444788888877654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.22  E-value=0.00031  Score=71.66  Aligned_cols=206  Identities=7%  Similarity=0.017  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-----CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-----GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG  216 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-----Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~  216 (385)
                      ..+.+...|.-+.+++..  ++.....+.+.     +.+.+++.+|.+   +|.-+...++..|+.++.....+   .+.
T Consensus        67 ~~d~vqyvL~Li~dll~~--~~~~~~~f~~~~~~~~~~~~~fl~lL~~---~d~~i~~~a~~iLt~l~~~~~~~---~~~  138 (429)
T cd00256          67 KDDTVRYVLTLIDDMLQE--DDTRVKLFHDDALLKKKTWEPFFNLLNR---QDQFIVHMSFSILAKLACFGLAK---MEG  138 (429)
T ss_pred             cHHHHHHHHHHHHHHHHh--chHHHHHHHHHhhccccchHHHHHHHcC---CchhHHHHHHHHHHHHHhcCccc---cch
Confidence            557777788888888875  66655555553     578888898876   47788899999999987542211   111


Q ss_pred             CCcH----HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHHHhcC
Q 016639          217 GGPK----LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT  290 (385)
Q Consensus       217 ggi~----~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--~v~k~A~~aL~~Lt~  290 (385)
                      ..++    .+...|+.. ++...+.-+..++..+. ..+..|..|.+.+++++|+.+|+....  ..+=+++-+++-|++
T Consensus       139 ~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL-~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF  216 (429)
T cd00256         139 SDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLL-RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF  216 (429)
T ss_pred             hHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHh-CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            1233    334444432 34555666677887765 567899999999999999999988652  455568999999998


Q ss_pred             CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHH
Q 016639          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCI  363 (385)
Q Consensus       291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll  363 (385)
                      ..+.          +....+.|.|+.|+++++...-..+.+-++.+|.||...       ..++..++++|.++.+..+.
T Consensus       217 ~~~~----------~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~  286 (429)
T cd00256         217 NPHA----------AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE  286 (429)
T ss_pred             cHHH----------HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence            6652          123446799999999999965556888899999999873       35678888888887775555


Q ss_pred             HhcC
Q 016639          364 DDSG  367 (385)
Q Consensus       364 ~~~~  367 (385)
                      ...-
T Consensus       287 ~rk~  290 (429)
T cd00256         287 QRKY  290 (429)
T ss_pred             cCCC
Confidence            4433

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.94  E-value=0.00046  Score=72.22  Aligned_cols=141  Identities=14%  Similarity=0.139  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh
Q 016639          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (385)
Q Consensus       231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e  310 (385)
                      .+....++||-++.+....-..-|..+-...++.+||.+|..+...+...+.++|.||.+.      ||.   ....+.+
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme------fs~---~kskfl~  459 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME------FSN---LKSKFLR  459 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh------ccc---HHHHHHH
Confidence            4566667777666665443333334444567899999999887778899999999999853      221   2334778


Q ss_pred             cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          311 IGIARALVHSLHAGLSSPSLISASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       311 ~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .|||+.|...+.++ +..++....|+|+++..+.  +...+...-=+-..|+.+..+    ++-.|+.||+.+||||
T Consensus       460 ~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl  531 (678)
T KOG1293|consen  460 NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNL  531 (678)
T ss_pred             cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence            99999999999886 6678899999999999874  344444444444555555543    3347999999999996

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=2.7e-05  Score=52.88  Aligned_cols=40  Identities=13%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHh
Q 016639          162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV  204 (385)
Q Consensus       162 ~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~  204 (385)
                      +++++..+.+.|++|+|+.+|++   .+.+++..|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~---~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS---PDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS---SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC---CCHHHHHHHHHHHHHHh
Confidence            47889999999999999999996   58999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.85  E-value=4e-05  Score=51.28  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       251 e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ++++..+++.|++++|+.+|.+.+.++++.++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            358899999999999999999877899999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PRK09687 putative lyase; Provisional

Probab=97.72  E-value=0.0014  Score=63.54  Aligned_cols=139  Identities=13%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (385)
Q Consensus       189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~  268 (385)
                      +..+...+.++|+.+-          +..+++.|+.+|++  ++..|...++.+|..+...++         .+++.|+.
T Consensus       141 ~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~  199 (280)
T PRK09687        141 STNVRFAVAFALSVIN----------DEAAIPLLINLLKD--PNGDVRNWAAFALNSNKYDNP---------DIREAFVA  199 (280)
T ss_pred             CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHH
Confidence            4555555555554331          12355666666654  345566666666655422222         24455666


Q ss_pred             HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHH
Q 016639          269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK  348 (385)
Q Consensus       269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~  348 (385)
                      +|......|.++|.++|..+-                    ..-++++|++.|... +  +...++.+|..+...     
T Consensus       200 ~L~D~~~~VR~~A~~aLg~~~--------------------~~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~~-----  251 (280)
T PRK09687        200 MLQDKNEEIRIEAIIGLALRK--------------------DKRVLSVLIKELKKG-T--VGDLIIEAAGELGDK-----  251 (280)
T ss_pred             HhcCCChHHHHHHHHHHHccC--------------------ChhHHHHHHHHHcCC-c--hHHHHHHHHHhcCCH-----
Confidence            666555566666666665432                    112477888887663 2  444566666655442     


Q ss_pred             HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       349 ~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                           -.++.|..++..++   +..+.+.+..+|.+
T Consensus       252 -----~a~p~L~~l~~~~~---d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 -----TLLPVLDTLLYKFD---DNEIITKAIDKLKR  279 (280)
T ss_pred             -----hHHHHHHHHHhhCC---ChhHHHHHHHHHhc
Confidence                 35677778887654   33677777777654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.0014  Score=66.64  Aligned_cols=175  Identities=13%  Similarity=0.151  Sum_probs=128.5

Q ss_pred             HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639          170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (385)
Q Consensus       170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (385)
                      .+...+..||..|...   +.+++.....-|--|.--.+++......|-++-|+++.-.  .++++...++..+.|+.. 
T Consensus       301 rrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~--~h~dL~~~tl~LlfNlSF-  374 (791)
T KOG1222|consen  301 RRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI--QHPDLRKATLMLLFNLSF-  374 (791)
T ss_pred             HHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC--CCHHHHHHHHHHhhhccc-
Confidence            4556778888888763   4444433333333333323344556667778888888764  578999999999999876 


Q ss_pred             ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       250 ~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      +..+|..++..|.+|.|+.+|.+.+.  ..-|...+..|+.||+.+.          +++...+|+.++..+-.+.+..+
T Consensus       375 D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~----------MfayTdci~~lmk~v~~~~~~~v  442 (791)
T KOG1222|consen  375 DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKA----------MFAYTDCIKLLMKDVLSGTGSEV  442 (791)
T ss_pred             cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHH----------HHHHHHHHHHHHHHHHhcCCcee
Confidence            45689999999999999999987653  3336778889999998765          46778899999998888766555


Q ss_pred             HHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH
Q 016639          330 LISASIALKAVAVNDEICKSVAENGGIDALLRC  362 (385)
Q Consensus       330 ~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l  362 (385)
                      -..+...--||+.+..+.+.+++-.|++.|++-
T Consensus       443 dl~lia~ciNl~lnkRNaQlvceGqgL~~LM~r  475 (791)
T KOG1222|consen  443 DLALIALCINLCLNKRNAQLVCEGQGLDLLMER  475 (791)
T ss_pred             cHHHHHHHHHHHhccccceEEecCcchHHHHHH
Confidence            445555556888888899999998899988754

>PRK09687 putative lyase; Provisional

Probab=97.64  E-value=0.0069  Score=58.73  Aligned_cols=144  Identities=13%  Similarity=0.040  Sum_probs=86.5

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      +++.|..++...  .++.|...|+.+|+.+..+...    .....++.+...+.+  ++..|...++++|..+  +++  
T Consensus        91 a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D--~~~~VR~~a~~aLg~~--~~~--  158 (280)
T PRK09687         91 VFNILNNLALED--KSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFD--KSTNVRFAVAFALSVI--NDE--  158 (280)
T ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhC--CCHHHHHHHHHHHhcc--CCH--
Confidence            456666653331  4667777777777776433210    111223333344443  3566777777777532  222  


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a  333 (385)
                             .+++.|+.+|...+..|...|+.+|..+..++                  ...+++|+.+|... +..|...+
T Consensus       159 -------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------------------~~~~~~L~~~L~D~-~~~VR~~A  212 (280)
T PRK09687        159 -------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------------------PDIREAFVAMLQDK-NEEIRIEA  212 (280)
T ss_pred             -------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------------------HHHHHHHHHHhcCC-ChHHHHHH
Confidence                   26778888888777778888888887772211                  12467899998664 77788888


Q ss_pred             HHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639          334 SIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       334 ~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                      .++|..+...          -+++.|++.+++
T Consensus       213 ~~aLg~~~~~----------~av~~Li~~L~~  234 (280)
T PRK09687        213 IIGLALRKDK----------RVLSVLIKELKK  234 (280)
T ss_pred             HHHHHccCCh----------hHHHHHHHHHcC
Confidence            8888776432          345555555554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.53  E-value=0.0021  Score=67.39  Aligned_cols=187  Identities=10%  Similarity=0.048  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-------------------cccCCcHhHHHHHHHHHHHHh
Q 016639          144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-------------------KMRCGSKRVLDSCLKTMALLV  204 (385)
Q Consensus       144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-------------------~~~~~d~~vl~~Al~aLa~L~  204 (385)
                      ....+.+.+-+++..+  .+.+|.++...-.++.-.....                   .....|....+.||-.+-++.
T Consensus       328 ~~~~ellf~~~sl~a~--~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s  405 (678)
T KOG1293|consen  328 KTTTELLFICASLAAS--DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS  405 (678)
T ss_pred             hhHHHHHHHHHHHhhc--chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence            3445556666666665  7778877765544443221111                   111135566777766666554


Q ss_pred             cCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 016639          205 HDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (385)
Q Consensus       205 ~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~  283 (385)
                      ..... +.-+-+.+++.+++++|..  ++.-|...++.+|.|+...--+-|..+.+.|+|+.|.+.+.+....+.+.+.|
T Consensus       406 rsV~aL~tg~~~~dv~~plvqll~d--p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~  483 (678)
T KOG1293|consen  406 RSVSALRTGLKRNDVAQPLVQLLMD--PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLW  483 (678)
T ss_pred             HHHHHHHcCCccchhHHHHHHHhhC--cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence            33221 1124467889999999964  56788999999999999888888999999999999999999988889999999


Q ss_pred             HHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       284 aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                      +||++.+++|+...        ...-..=+..-|+.+... ++.+|++..+..|+||..+
T Consensus       484 ~Lr~l~f~~de~~k--------~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  484 VLRHLMFNCDEEEK--------FQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHHhcchHHHH--------HHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcC
Confidence            99999999886532        122222223344454444 4778999999999999776

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.012  Score=63.13  Aligned_cols=219  Identities=14%  Similarity=0.097  Sum_probs=145.9

Q ss_pred             hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639          119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK  198 (385)
Q Consensus       119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~  198 (385)
                      -+.+.++.|..-+.++.      -++.-+.|+..|...+++     +|..++ +-|+++|+..|+.-. .|++.+..+|.
T Consensus        19 s~aETI~kLcDRvessT------L~eDRR~A~rgLKa~srk-----YR~~Vg-a~Gmk~li~vL~~D~-~D~E~ik~~Ld   85 (970)
T KOG0946|consen   19 SAAETIEKLCDRVESST------LLEDRRDAVRGLKAFSRK-----YREEVG-AQGMKPLIQVLQRDY-MDPEIIKYALD   85 (970)
T ss_pred             cHHhHHHHHHHHHhhcc------chhhHHHHHHHHHHHHHH-----HHHHHH-HcccHHHHHHHhhcc-CCHHHHHHHHH
Confidence            44577888887776542      578889999999999765     555554 455999999998643 47889999999


Q ss_pred             HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHH
Q 016639          199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (385)
Q Consensus       199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~  278 (385)
                      ++..++...+. +.+++                ++......--|++....++++         -|..|+..+...+..|+
T Consensus        86 Tl~il~~~dd~-~~v~d----------------ds~qsdd~g~~iae~fik~qd---------~I~lll~~~e~~DF~VR  139 (970)
T KOG0946|consen   86 TLLILTSHDDS-PEVMD----------------DSTQSDDLGLWIAEQFIKNQD---------NITLLLQSLEEFDFHVR  139 (970)
T ss_pred             HHHHHHhcCcc-hhhcc----------------cchhhhHHHHHHHHHHHcCch---------hHHHHHHHHHhhchhhh
Confidence            99998876542 22211                122112222334444445544         56677889988888899


Q ss_pred             HHHHHHHHHhcCCCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHc-CcH
Q 016639          279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN-GGI  356 (385)
Q Consensus       279 k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~-GGl  356 (385)
                      ..+.-.|.+|...-.-        +-...|. .--||..|+++|+.. -..++-++...|..|...+...+.++.. .+-
T Consensus       140 ~~aIqLlsalls~r~~--------e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaF  210 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPT--------ELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAF  210 (970)
T ss_pred             hHHHHHHHHHHhcCCH--------HHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHH
Confidence            9999999998532221        1122333 457899999999884 3336667788888888777766666654 467


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          357 DALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.|+.++..-+....--|+..|+.+|-||
T Consensus       211 erLfsIIeeEGg~dGgIVveDCL~ll~NL  239 (970)
T KOG0946|consen  211 ERLFSIIEEEGGLDGGIVVEDCLILLNNL  239 (970)
T ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence            77878877633222125778888877654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.40  E-value=0.0045  Score=62.91  Aligned_cols=184  Identities=13%  Similarity=0.106  Sum_probs=139.6

Q ss_pred             HHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 016639          169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (385)
Q Consensus       169 ~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~  248 (385)
                      +...|++..|+.++.... -...+...|-+.|-.++.. ++++-++..| +..++.+-+. .+..+++...+..|.+.-.
T Consensus       176 iR~~~~lD~Llrmf~aPn-~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~-~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPN-LETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKE-REPVELARSVAGILEHMFK  251 (832)
T ss_pred             hhccchHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhh-cCcHHHHHHHHHHHHHHhh
Confidence            445688999999998752 1235667777777766543 2334454444 6677666654 4678899999999999988


Q ss_pred             CChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHH
Q 016639          249 GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP  328 (385)
Q Consensus       249 ~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~  328 (385)
                      -.|+..+.++++|+++.++--.++..+...+.++-+|.|.++-        +.++-.++|++..+.+-|.-+..+. |.-
T Consensus       252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~--------~~~a~qrrmveKr~~EWLF~LA~sk-Del  322 (832)
T KOG3678|consen  252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH--------GGQAVQRRMVEKRAAEWLFPLAFSK-DEL  322 (832)
T ss_pred             hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh--------chhHHHHHHHHhhhhhhhhhhhcch-HHH
Confidence            8888899999999999999888888888999999999998752        2235567788776777776665442 555


Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639          329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       329 v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                      +.-.+|.+...|+.+.|+-..+...|-+..+.-++..
T Consensus       323 ~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~  359 (832)
T KOG3678|consen  323 LRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS  359 (832)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence            5668999999999999999999999998888777665

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.022  Score=61.17  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=151.1

Q ss_pred             CcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchh-HhhC
Q 016639          139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET-FRTG  216 (385)
Q Consensus       139 ~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~-i~~~  216 (385)
                      +..|...-.-++.-|..+.+. ..++-+.++... -||..|+.+|...   .+.+...++--|..|+.++..-+. ++-.
T Consensus       132 e~~DF~VR~~aIqLlsalls~-r~~e~q~~ll~~P~gIS~lmdlL~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFE  207 (970)
T KOG0946|consen  132 EEFDFHVRLYAIQLLSALLSC-RPTELQDALLVSPMGISKLMDLLRDS---REPIRNEAILLLSELVKDNSSIQKLVAFE  207 (970)
T ss_pred             HhhchhhhhHHHHHHHHHHhc-CCHHHHHHHHHCchhHHHHHHHHhhh---hhhhchhHHHHHHHHHccCchHHHHHHHH
Confidence            334777778888888888775 456666666554 6799999999863   455777888889999988766443 4456


Q ss_pred             CCcHHHHHHHhcCC-CCH-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----------H---HHHHH
Q 016639          217 GGPKLLVNILIDGN-EDP-EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----------D---SIQSL  281 (385)
Q Consensus       217 ggi~~Lv~lL~~~~-~~~-~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----------~---v~k~A  281 (385)
                      ++-+.|..++.... -+. -|+..++..|.++...|-.|++-|-+.+-||.|.++|..+..          .   -+-.+
T Consensus       208 NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~  287 (970)
T KOG0946|consen  208 NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA  287 (970)
T ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence            77888888887643 233 468899999999999999999999999999999988865321          1   12237


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HHHHHHH
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EICKSVA  351 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~c~~I~  351 (385)
                      ..++|.|...+.-   .+-+|.+.+.+...+++..||.++-+.. ..+++.....+++++...| .+...++
T Consensus       288 Lqivr~lVsP~Nt---~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~  356 (970)
T KOG0946|consen  288 LQIVRSLVSPGNT---SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFA  356 (970)
T ss_pred             HHHHHHhcCCCCc---HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHh
Confidence            7788888766542   3556778888999999999999997753 4577877777888776544 3444444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0064  Score=62.04  Aligned_cols=166  Identities=14%  Similarity=0.075  Sum_probs=133.1

Q ss_pred             cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (385)
Q Consensus       189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~  268 (385)
                      ...++..|+--|.||+.+...-.......-+..||+.|..  ++.++.......|..+. .-.+||..+.+.|+++.|+.
T Consensus       276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr--~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~k  352 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR--SNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc--cchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHH
Confidence            4567777888888888764322455667778889999975  46788888888888876 45679999999999999999


Q ss_pred             HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHH
Q 016639          269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK  348 (385)
Q Consensus       269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~  348 (385)
                      +.....++.++.....|.||++|...|-          .++..|.+|.|+.+|.+.....   -+...|..++.++....
T Consensus       353 lfp~~h~dL~~~tl~LlfNlSFD~glr~----------KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~  419 (791)
T KOG1222|consen  353 LFPIQHPDLRKATLMLLFNLSFDSGLRP----------KMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKA  419 (791)
T ss_pred             hcCCCCHHHHHHHHHHhhhccccccccH----------HHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHH
Confidence            9999888899999999999999988775          4788899999999997743222   35567888899999999


Q ss_pred             HHHHcCcHHHHHHHHHhcCCcC
Q 016639          349 SVAENGGIDALLRCIDDSGLQG  370 (385)
Q Consensus       349 ~I~e~GGl~~Lv~ll~~~~~~~  370 (385)
                      .+.-...|+.++..+-.+.+..
T Consensus       420 MfayTdci~~lmk~v~~~~~~~  441 (791)
T KOG1222|consen  420 MFAYTDCIKLLMKDVLSGTGSE  441 (791)
T ss_pred             HHHHHHHHHHHHHHHHhcCCce
Confidence            9999999999988877665554

>PF05536 Neurochondrin: Neurochondrin

Probab=97.22  E-value=0.0089  Score=63.21  Aligned_cols=154  Identities=18%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCC-----CCHHHHHHHHHHHH
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGN-----EDPEILNSGFAVVA  244 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~-----~~~~v~~~a~~~L~  244 (385)
                      .+...+.+|+..  .|. -.-.+|--++.++.+.+.    +..|.++=|.+++-++|+.+.     +...-...|..+|.
T Consensus         6 ~l~~c~~lL~~~--~D~-~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    6 SLEKCLSLLKSA--DDT-ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHhccC--CcH-HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            356677788775  233 333467788888877653    235789999999999999854     23445778888888


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhc
Q 016639          245 ASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA  323 (385)
Q Consensus       245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~  323 (385)
                      ..|+ .++....--=.+-||.|++++.+.+. .++.+++.+|..++...          +-++.+.+.|+++.|++.+..
T Consensus        83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~----------~G~~aLl~~g~v~~L~ei~~~  151 (543)
T PF05536_consen   83 AFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP----------EGAKALLESGAVPALCEIIPN  151 (543)
T ss_pred             HHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc----------HhHHHHHhcCCHHHHHHHHHh
Confidence            8776 44443211113689999999999887 89999999999998543          335679999999999999988


Q ss_pred             CCCHHHHHHHHHHHHHhhcC
Q 016639          324 GLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       324 ~~~~~v~~~a~~aL~~La~~  343 (385)
                      +.  ...+.++.+|.++..+
T Consensus       152 ~~--~~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  152 QS--FQMEIALNLLLNLLSR  169 (543)
T ss_pred             Cc--chHHHHHHHHHHHHHh
Confidence            43  2345666666665443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.15  E-value=0.049  Score=61.08  Aligned_cols=170  Identities=16%  Similarity=0.088  Sum_probs=94.5

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      ..+.|+.+|+.   .|..+...|+++|+.+-             ..+.|..+|.+  ++..|...++.+|..+..  +  
T Consensus       715 ~~~~l~~~L~D---~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D--~~~~VR~~aa~aL~~~~~--~--  772 (897)
T PRK13800        715 DAALFAAALGD---PDHRVRIEAVRALVSVD-------------DVESVAGAATD--ENREVRIAVAKGLATLGA--G--  772 (897)
T ss_pred             CHHHHHHHhcC---CCHHHHHHHHHHHhccc-------------CcHHHHHHhcC--CCHHHHHHHHHHHHHhcc--c--
Confidence            34566677765   57788888888887641             11334455543  456666666666665432  1  


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCcc--ch--hhhhchh-----HHHHHHh---cCcHHHHHHHH
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD--QV--VASQVYG-----YARRFAK---IGIARALVHSL  321 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~--rv--~~g~a~~-----~a~~I~e---~Ggi~~Lv~lL  321 (385)
                           +...++.|..+++..+..|+..|+.+|..+......  .+  .......     =+..+.+   ...+++|+.+|
T Consensus       773 -----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L  847 (897)
T PRK13800        773 -----GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEAL  847 (897)
T ss_pred             -----cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHh
Confidence                 112355666666655555555566666555322111  00  0000000     1111222   23568899999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       322 ~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +.. +..|...+..+|..+...+.         ..+.|..++.+    .+..|.+.+..+|+.
T Consensus       848 ~D~-~~~VR~~A~~aL~~~~~~~~---------a~~~L~~al~D----~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        848 TDP-HLDVRKAAVLALTRWPGDPA---------ARDALTTALTD----SDADVRAYARRALAH  896 (897)
T ss_pred             cCC-CHHHHHHHHHHHhccCCCHH---------HHHHHHHHHhC----CCHHHHHHHHHHHhh
Confidence            774 77899999999988733222         24445566654    445888888888863

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.05  E-value=0.0042  Score=53.56  Aligned_cols=132  Identities=12%  Similarity=0.136  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +.+.....+..|.+-.-   +|-|+....+.+++...|..|..   .++.+.+.++..|.|+|-+.....-|.+++|+|.
T Consensus        30 ~~eakeqv~ANLANFAY---DP~Nys~Lrql~vLdlFvdsl~e---~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pl  103 (173)
T KOG4646|consen   30 NIEAKEQVTANLANFAY---DPINYSHLRQLDVLDLFVDSLEE---QNELLVEFGIGGLCNLCLDKTNAKFIREALGLPL  103 (173)
T ss_pred             cHHHHHHHHHHHHhhcc---CcchHHHHHHhhHHHHHHHHhhc---ccHHHHHHhHHHHHhhccChHHHHHHHHhcCCce
Confidence            66777777777777765   79999999999999999999987   4888999999999999987655678899999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ++..|+++  ...++-.++-++..++-++-.-|..+    .-|+++.++....    ..+..-+|||+
T Consensus       104 ii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~el----l~p~Vv~~v~r~~----~s~s~~~rnLa  161 (173)
T KOG4646|consen  104 IIFVLSSP--PEITVHSAALFLQLLEFGERTERDEL----LSPAVVRTVQRWR----ESKSHDERNLA  161 (173)
T ss_pred             EEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHh----ccHHHHHHHHHHH----HHhhHHHHHHH
Confidence            99999864  45667788888888887766556555    4567777775443    22334456664

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.97  E-value=0.016  Score=59.82  Aligned_cols=178  Identities=14%  Similarity=0.112  Sum_probs=113.3

Q ss_pred             HHHHHHHhcCCccchhHhhCCCcHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639          197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--------IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (385)
Q Consensus       197 l~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL--------~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~  268 (385)
                      |.+|--+..+......+....|+..|.++=        .....+.++...|+++|+|+...++.-|+.+++.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            334444444433334455555555555543        123457889999999999999999999999999999999999


Q ss_pred             HHccC-----ChHHHHHHHHHHHHhcC-CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCC----------------
Q 016639          269 ILSRQ-----RNDSIQSLYDAIRVLLT-PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL----------------  325 (385)
Q Consensus       269 lL~~~-----~~~v~k~A~~aL~~Lt~-~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~----------------  325 (385)
                      .|+.+     ..++.--.++.|+-+|. ..+.|          ..++ +.+|+..|+..|..+.                
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~----------~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~  151 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDR----------KKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPM  151 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHH----------HHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcc
Confidence            99997     34566667777777763 23333          2455 5688888888776642                


Q ss_pred             CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc---C--CcCcHHHHHHHHHHHhc
Q 016639          326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS---G--LQGNKTVARICCSLLSK  384 (385)
Q Consensus       326 ~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~---~--~~~~~~v~k~a~~~Lr~  384 (385)
                      +...+.+++.++.|+.........=.+.+.++.|+.+++..   .  .........++..+|-|
T Consensus       152 ~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~n  215 (446)
T PF10165_consen  152 DEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLN  215 (446)
T ss_pred             hHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhC
Confidence            11345678888888866432222123456777777777765   1  22223444555555544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.94  E-value=0.0022  Score=42.63  Aligned_cols=39  Identities=10%  Similarity=0.183  Sum_probs=34.6

Q ss_pred             hhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHh
Q 016639          163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV  204 (385)
Q Consensus       163 ~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~  204 (385)
                      ++++..+.+.|++|.|+.+|++   ++.+++..|+++|.+|+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~---~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKS---EDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHc
Confidence            3478889999999999999985   58899999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.88  E-value=0.0044  Score=50.87  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 016639          194 DSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL  260 (385)
Q Consensus       194 ~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~  260 (385)
                      ...++.|++|+..+.. +..+.+.|||+.++..-.-...++-+...|.++|+++|.+|++|++.|.+.
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3457899999987655 467789999999999877666788999999999999999999998877643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05536 Neurochondrin: Neurochondrin

Probab=96.82  E-value=0.039  Score=58.39  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCChHHHHHHHccCCh-------HHHHHHHHHHHHhc
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKIDELILEILSRQRN-------DSIQSLYDAIRVLL  289 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~iv~~G~i~~Lv~lL~~~~~-------~v~k~A~~aL~~Lt  289 (385)
                      +..+.+|+...  .+-.=.|+..+..++...+.+   ++.|.++=|.+=|-.+|+++..       ..+.=|...|..++
T Consensus         8 ~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    8 EKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            34455555433  222335667777777665533   3457788778889999988432       33334888888888


Q ss_pred             CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       290 ~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                      .+++....       - .++  +-||.|++++....+..+..+++..|..++..++-.+.+.+.|+++.|.+++.++
T Consensus        86 ~~~~~a~~-------~-~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~  152 (543)
T PF05536_consen   86 RDPELASS-------P-QMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ  152 (543)
T ss_pred             CChhhhcC-------H-HHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC
Confidence            86664321       1 233  3499999999997554788999999999999999999999999999999999883

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.80  E-value=0.22  Score=55.98  Aligned_cols=165  Identities=14%  Similarity=0.089  Sum_probs=96.1

Q ss_pred             HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (385)
Q Consensus       175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (385)
                      .+.|..+|.+   .++.+...|+.+|..+-.++           ...++..|++  ++..+...++++|..+        
T Consensus       686 ~~~L~~~L~~---~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D--~d~~VR~~Av~aL~~~--------  741 (897)
T PRK13800        686 APALRDHLGS---PDPVVRAAALDVLRALRAGD-----------AALFAAALGD--PDHRVRIEAVRALVSV--------  741 (897)
T ss_pred             hHHHHHHhcC---CCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcC--CCHHHHHHHHHHHhcc--------
Confidence            3577788876   58899999999998764322           2456777775  5788988888888753        


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh-hhhc----h-----hHHHHHHhcCc----HHHHHHH
Q 016639          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV-ASQV----Y-----GYARRFAKIGI----ARALVHS  320 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~-~g~a----~-----~~a~~I~e~Gg----i~~Lv~l  320 (385)
                            +..+.|..+|...+..|+..++.+|..+...+..-.+ ....    .     .=+..+.+.|.    +..|+.+
T Consensus       742 ------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a  815 (897)
T PRK13800        742 ------DDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA  815 (897)
T ss_pred             ------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence                  1234567788887778888888888777432210000 0000    0     00112222221    2344555


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      |+.. +..|...+..+|..+...          -.++.|+.++.+    ++..|-+.+..+|..
T Consensus       816 L~d~-d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D----~~~~VR~~A~~aL~~  864 (897)
T PRK13800        816 LRAS-AWQVRQGAARALAGAAAD----------VAVPALVEALTD----PHLDVRKAAVLALTR  864 (897)
T ss_pred             hcCC-ChHHHHHHHHHHHhcccc----------chHHHHHHHhcC----CCHHHHHHHHHHHhc
Confidence            5442 444555566666554321          234667777754    344777777777754

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=96.77  E-value=0.0077  Score=51.97  Aligned_cols=113  Identities=12%  Similarity=0.047  Sum_probs=90.7

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      +-+..||.-.+..  .+.+.....+..|+|..-|+-+-.-+.+.+.+++.+..|..  .+..++..+...|+|+|. +..
T Consensus        16 ~Ylq~LV~efq~t--t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e--~ne~LvefgIgglCNlC~-d~~   90 (173)
T KOG4646|consen   16 EYLQHLVDEFQTT--TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE--QNELLVEFGIGGLCNLCL-DKT   90 (173)
T ss_pred             HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc--ccHHHHHHhHHHHHhhcc-ChH
Confidence            3456677777665  35666666667777776654333567789999999999985  578889999999999996 678


Q ss_pred             hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT  290 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~  290 (385)
                      |+.-|.+++++|.++.+|.++...++..|+.++.-|..
T Consensus        91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~  128 (173)
T KOG4646|consen   91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF  128 (173)
T ss_pred             HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence            99999999999999999999988888889988888874

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.27  Score=50.05  Aligned_cols=244  Identities=16%  Similarity=0.137  Sum_probs=144.0

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCC---C-ChhhHH---HHHHcCcHHHHHHHHhcccCCcHh---
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN---E-GSVNAA---VATKNGGVELVCSICYKMRCGSKR---  191 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~---~-~~~~r~---~~~~~Gaip~Lv~lL~~~~~~d~~---  191 (385)
                      .++++|...+.-.       +.+.....+.-|+++...-   + .+..+.   ..++.+.++.||+-+.......++   
T Consensus       125 n~V~slL~LLgHe-------NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~  197 (536)
T KOG2734|consen  125 NAVQSLLELLGHE-------NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEAD  197 (536)
T ss_pred             ccHHHHHHHhcCC-------CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhh
Confidence            4677777777643       5566666666666665531   1 222233   347778899999988765322221   


Q ss_pred             HHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH
Q 016639          192 VLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL  270 (385)
Q Consensus       192 vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL  270 (385)
                      -...++..+-|++.-.+. +..+++.|-+.-|+.=+.....-......+.-+++-+...+.+|+..+-...|+..++.-|
T Consensus       198 gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l  277 (536)
T KOG2734|consen  198 GVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL  277 (536)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence            233445555555533222 3444555555555553443322223333444444444455556888888999999998877


Q ss_pred             cc---CCh------HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          271 SR---QRN------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       271 ~~---~~~------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      .-   +++      +...+...+|+++...-.+|          ..++...|+....-.|+.  .+-.+..+..+|-...
T Consensus       278 a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr----------~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am  345 (536)
T KOG2734|consen  278 AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR----------ERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAM  345 (536)
T ss_pred             chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh----------hhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHH
Confidence            33   332      56677888888886544443          468877788655555555  2223456666776665


Q ss_pred             cCh---HHHHHHHHcCcHHHHHHHHHhcCC------cCcHHHHHHHHHHHhc
Q 016639          342 VND---EICKSVAENGGIDALLRCIDDSGL------QGNKTVARICCSLLSK  384 (385)
Q Consensus       342 ~~~---e~c~~I~e~GGl~~Lv~ll~~~~~------~~~~~v~k~a~~~Lr~  384 (385)
                      .++   ++|..+++.+|+..+..+-...+.      -.-++.-++.|++|..
T Consensus       346 ~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaS  397 (536)
T KOG2734|consen  346 FGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILAS  397 (536)
T ss_pred             hCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHH
Confidence            553   799999999999999876432111      0013566777776653

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.63  E-value=0.04  Score=56.93  Aligned_cols=141  Identities=12%  Similarity=0.066  Sum_probs=104.4

Q ss_pred             HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-------cccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHH
Q 016639          150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-------KMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKL  221 (385)
Q Consensus       150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-------~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~  221 (385)
                      |..|+.+.+   ++.+..-+....++..|+.+-.       .....+..+...|+++|+|++-..+. ++.+++.|+.+.
T Consensus         2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~   78 (446)
T PF10165_consen    2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK   78 (446)
T ss_pred             HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence            667777777   4666666666666777777650       11124678999999999999987665 578889999999


Q ss_pred             HHHHHhcCCC---CHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHHHccCCh-----------------HHHHH
Q 016639          222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYME-LKIDELILEILSRQRN-----------------DSIQS  280 (385)
Q Consensus       222 Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G~i~~Lv~lL~~~~~-----------------~v~k~  280 (385)
                      +++.|+.+.+   +.++.-..++.+--+++.....+..+++ .+++..|+..|..+-.                 .+.-+
T Consensus        79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            9999998633   5677777888888888888888877775 5899988887755311                 45667


Q ss_pred             HHHHHHHhcCCCc
Q 016639          281 LYDAIRVLLTPDD  293 (385)
Q Consensus       281 A~~aL~~Lt~~Dd  293 (385)
                      +..+++|++..-.
T Consensus       159 iLKllFNit~~~~  171 (446)
T PF10165_consen  159 ILKLLFNITLHYP  171 (446)
T ss_pred             HHHHHHHhhhccC
Confidence            8899999985444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.36  E-value=0.19  Score=52.32  Aligned_cols=99  Identities=15%  Similarity=0.098  Sum_probs=51.4

Q ss_pred             ChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      .++.+..+|++.+..|+-+++.++..+...+.               .-..++++|+.+|.+ +++.++--++..|..++
T Consensus       232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~---------------~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE---------------LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLA  295 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---------------HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhhcchH---------------HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhh
Confidence            44455555554444555555555555543211               123457788888874 36667667777777776


Q ss_pred             cChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       342 ~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ..+   ...+.  .....+..+..   +.+..+-+.++.+|.+
T Consensus       296 ~~~---~~~v~--~~~~~~~~l~~---~~d~~Ir~~~l~lL~~  330 (526)
T PF01602_consen  296 QSN---PPAVF--NQSLILFFLLY---DDDPSIRKKALDLLYK  330 (526)
T ss_dssp             CHC---HHHHG--THHHHHHHHHC---SSSHHHHHHHHHHHHH
T ss_pred             ccc---chhhh--hhhhhhheecC---CCChhHHHHHHHHHhh
Confidence            654   11111  33333445542   2223566666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.33  E-value=0.31  Score=49.24  Aligned_cols=197  Identities=13%  Similarity=0.038  Sum_probs=133.2

Q ss_pred             HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcC
Q 016639          150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG  229 (385)
Q Consensus       150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~  229 (385)
                      +..|..+.+.  +|.-+....-.--.+.+...+-+   ++..+.+.+++.+..++.+.+.-+.+.+.+.--+++.-|...
T Consensus         4 ~N~Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~   78 (371)
T PF14664_consen    4 ANDLVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD   78 (371)
T ss_pred             HHHHHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc
Confidence            3445555554  56544444333344444443333   358899999999999999876667778888888888888765


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639          230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (385)
Q Consensus       230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~  309 (385)
                      .+...=...|++.++.....+.. . .-+--|++..|+.+..+.++....-+..+|+-|+.-|.            ..++
T Consensus        79 ~~~~~ER~QALkliR~~l~~~~~-~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P------------~lv~  144 (371)
T PF14664_consen   79 NKNDVEREQALKLIRAFLEIKKG-P-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP------------ELVA  144 (371)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCC-c-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH------------HHHH
Confidence            44433355788888887654221 1 12345788899999988777777778899999986543            2355


Q ss_pred             hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                      ++||+.+|++.+-.+. -.+.+.++.++-.+.-.+..++-+..---++.++.-.-+.
T Consensus       145 ~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~  200 (371)
T PF14664_consen  145 ECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDF  200 (371)
T ss_pred             HcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhh
Confidence            8999999999998753 2366677888877776666666555434566666555544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.35  Score=53.92  Aligned_cols=139  Identities=15%  Similarity=0.119  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHH----cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCC
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG  218 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~----~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~gg  218 (385)
                      .+.+.-+|.+|+++.+.  +|+-...+..    -|-.+.+..+++..  .+++++.-||+.+.-++...++-.++++.+.
T Consensus      1739 ~~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNV 1814 (2235)
T ss_pred             HHHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhH
Confidence            45788899999999997  7753333322    37788888888876  5777888889999887777665588899999


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH-HHHHHHHHhc
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ-SLYDAIRVLL  289 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k-~A~~aL~~Lt  289 (385)
                      +-.|+.+|.+   .+.....++.+|..+++. .+....-++.|++.-|..++-..+..-++ .++..+..|+
T Consensus      1815 L~~LL~lLHS---~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1815 LTTLLTLLHS---QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred             HHHHHHHHhc---ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence            9999999986   456667778888887654 45555666788888888777665443344 3566666664

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.23  E-value=0.47  Score=48.02  Aligned_cols=126  Identities=13%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhc-CCCChhhHH-HHHHcCcH-HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcH
Q 016639          145 EMMGLFDKLIELCG-GNEGSVNAA-VATKNGGV-ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPK  220 (385)
Q Consensus       145 ~~~~al~~L~~lc~-~~~~~~~r~-~~~~~Gai-p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~  220 (385)
                      -++..|+.+..... . .+...+. -+.+.+.+ ..|...++....=...+...|+..++.+++..+.. ..+.++|-++
T Consensus        76 llK~lLk~l~~~~~~~-~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   76 LLKSLLKFLSHAMQHS-GGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHhccC-CCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            34444555555555 2 0222222 23343443 34444555432113578899999999998876655 6777889999


Q ss_pred             HHHHHHh-c-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc
Q 016639          221 LLVNILI-D-GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR  272 (385)
Q Consensus       221 ~Lv~lL~-~-~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~  272 (385)
                      .+++.+. . -....+++..--.++..+|. |+.-.+.+.+.+.++.+++++.+
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCC
Confidence            9999887 3 34678888888888998886 67788889999999888866644

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.19  Score=56.16  Aligned_cols=174  Identities=10%  Similarity=0.071  Sum_probs=116.0

Q ss_pred             HHHHHHH----HhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC---CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639          175 VELVCSI----CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG---GGPKLLVNILIDGNEDPEILNSGFAVVAASA  247 (385)
Q Consensus       175 ip~Lv~l----L~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~---ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (385)
                      .|+++..    |.+   .+..-.-.+|.+|+.+..|-   .+.+..   .-++.++..|.+  +++.|+-+||.++...+
T Consensus       346 ~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc---~~~m~~~l~~Il~~Vl~~l~D--phprVr~AA~naigQ~s  417 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQS---TEWKERHAALLALSVIAEGC---SDVMIGNLPKILPIVLNGLND--PHPRVRYAALNAIGQMS  417 (1075)
T ss_pred             hHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhhh
Confidence            4555544    444   47788888999999998885   455543   234555556654  46889999999999988


Q ss_pred             cCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh---cCcHHHHHHHHhc
Q 016639          248 TGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLHA  323 (385)
Q Consensus       248 ~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e---~Ggi~~Lv~lL~~  323 (385)
                      +.--.-.+.-...-+++.|+..|.+... .|+..|+.++-|++.+-+.            -+.+   .+.+.+++..|..
T Consensus       418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~------------~~l~pYLd~lm~~~l~~L~~  485 (1075)
T KOG2171|consen  418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK------------SILEPYLDGLMEKKLLLLLQ  485 (1075)
T ss_pred             hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH------------HHHHHHHHHHHHHHHHHHhc
Confidence            7665566666777899999999988644 8888899999998753331            1221   2445545556655


Q ss_pred             CCCHHHHHHHHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639          324 GLSSPSLISASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQG  370 (385)
Q Consensus       324 ~~~~~v~~~a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~~~~~~~  370 (385)
                      ...+.+++.+..+++..|..-  .|..-+.  --++.|...|.+..+..
T Consensus       486 ~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d  532 (1075)
T KOG2171|consen  486 SSKPYVQEQAVTAIASVADAAQEKFIPYFD--RLMPLLKNFLQNADDKD  532 (1075)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhhhhHhHHH--HHHHHHHHHHhCCCchh
Confidence            446778889999998887532  2222221  13456667777655333

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.11  E-value=0.051  Score=51.93  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~  220 (385)
                      ....+..+|+.|+-+|--  +|..|..+.+..++..|+.+|...  +.+.++..++.+|..++-+.+. ...|-+.+|+.
T Consensus       104 ~~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~  179 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLS  179 (257)
T ss_pred             hhHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence            334678899999999998  999999999999999999999553  4678999999999998877665 47888999999


Q ss_pred             HHHHHHhcCCCCHHH
Q 016639          221 LLVNILIDGNEDPEI  235 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v  235 (385)
                      .++.++++...+.++
T Consensus       180 ~v~~llk~~~~~~~~  194 (257)
T PF08045_consen  180 TVCSLLKSKSTDREL  194 (257)
T ss_pred             HHHHHHccccccHHH
Confidence            999999986545444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.08  E-value=0.02  Score=44.51  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhh
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~  298 (385)
                      |+.|++.|.. .++..+...++++|...  +++         .+++.|+.+|++.+..++..|+++|..+-         
T Consensus         1 i~~L~~~l~~-~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQN-DPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHT-SSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            5788888854 36788999999998742  222         35899999998777788888999888652         


Q ss_pred             hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639          299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (385)
Q Consensus       299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~  338 (385)
                                 ...+++.|+++|....+..+...+..+|+
T Consensus        60 -----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -----------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                       23368899999988545556667776663

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.06  E-value=0.2  Score=44.51  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=95.9

Q ss_pred             HHHHcCcHHHHHHHHhcccCC---cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639          168 VATKNGGVELVCSICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA  244 (385)
Q Consensus       168 ~~~~~Gaip~Lv~lL~~~~~~---d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~  244 (385)
                      .+...||++.|++.....+..   ....+..+|.++..|....-..=+.++..=|..++..+.....+..++..++..|-
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            456788999999999886421   24788889999998876543223455555577778888766668899999999999


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ++....+.--+.|.+.=-++.|+..|+..+.+++.+|.+.+-+|-
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            998877766777777778999999999988899999998888884

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.00  E-value=0.39  Score=49.86  Aligned_cols=261  Identities=15%  Similarity=0.110  Sum_probs=154.4

Q ss_pred             HhhHHhcCCChhHHHHHHHHH---HHHcCCCCCCCccC----CCCC---------------CCCCCchHHHHHHHHHHHh
Q 016639           74 KENMEDLGMEPTEALQDAIQT---LSLQGVDLSGIVKC----VPGE---------------SSLKDNPLIQSLERLKQLD  131 (385)
Q Consensus        74 ~eni~~f~m~~~eAl~~aI~q---fe~QGvdLsni~~~----~~~~---------------~~~~~~~v~~al~~L~~~l  131 (385)
                      ++-.+.|. .-.+-.+++++.   ...+|.|.+-....    ....               .......+.-++..++..+
T Consensus        10 ~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl   88 (526)
T PF01602_consen   10 AKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL   88 (526)
T ss_dssp             HHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            45556666 455566777777   37899998855222    1111               0001112335667777766


Q ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccch
Q 016639          132 LNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTE  211 (385)
Q Consensus       132 ~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~  211 (385)
                      .+.       ++....-||+.|..++.    ++-..     -.++.+..++.+   +++.+...|+-++..+....   +
T Consensus        89 ~~~-------n~~~~~lAL~~l~~i~~----~~~~~-----~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~---p  146 (526)
T PF01602_consen   89 NSP-------NPYIRGLALRTLSNIRT----PEMAE-----PLIPDVIKLLSD---PSPYVRKKAALALLKIYRKD---P  146 (526)
T ss_dssp             CSS-------SHHHHHHHHHHHHHH-S----HHHHH-----HHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHC---H
T ss_pred             cCC-------CHHHHHHHHhhhhhhcc----cchhh-----HHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC---H
Confidence            554       66777788888888764    33211     147778888886   47889999999999987654   3


Q ss_pred             hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639          212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP  291 (385)
Q Consensus       212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~  291 (385)
                      +.+...-++.+.++|.+  .++.++..|+.++..+ ..++..-..+ -...+..|..++...++-.+......|..++..
T Consensus       147 ~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~  222 (526)
T PF01602_consen  147 DLVEDELIPKLKQLLSD--KDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM  222 (526)
T ss_dssp             CCHHGGHHHHHHHHTTH--SSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred             HHHHHHHHHHHhhhccC--CcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence            33322258888899965  4688999999999887 2222211111 112334444444555655666677777777643


Q ss_pred             CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCc
Q 016639          292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGN  371 (385)
Q Consensus       292 Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~  371 (385)
                      +...         .   -+...++.+..+|++. ++.|+-+++.++..+...++     .-..+++.|..++.+ ++ . 
T Consensus       223 ~~~~---------~---~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~~-~-  281 (526)
T PF01602_consen  223 EPED---------A---DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-SD-P-  281 (526)
T ss_dssp             SHHH---------H---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-SS-H-
T ss_pred             Chhh---------h---hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-cc-c-
Confidence            3311         1   0034678888888853 66788888888888877666     223456677788863 22 2 


Q ss_pred             HHHHHHHHHHHh
Q 016639          372 KTVARICCSLLS  383 (385)
Q Consensus       372 ~~v~k~a~~~Lr  383 (385)
                       .+.-.++..|.
T Consensus       282 -nvr~~~L~~L~  292 (526)
T PF01602_consen  282 -NVRYIALDSLS  292 (526)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -hhehhHHHHHH
Confidence             34445555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=1.1  Score=45.78  Aligned_cols=206  Identities=11%  Similarity=0.100  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc---c-------chhHh
Q 016639          145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---S-------TETFR  214 (385)
Q Consensus       145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~---~-------~~~i~  214 (385)
                      .+...++++..++..   |+-.-.+++.++++.|++||.+.   +.++....+.-|--|++.+-   +       -.+++
T Consensus       100 dLhd~IQ~mhvlAt~---PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv  173 (536)
T KOG2734|consen  100 DLHDIIQEMHVLATM---PDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV  173 (536)
T ss_pred             cHHHHHHHHHhhhcC---hHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH
Confidence            455678888888874   77676889999999999999873   55666655666666554211   1       12345


Q ss_pred             hCCCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHH-HHHHHHHh
Q 016639          215 TGGGPKLLVNILIDGN----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQS-LYDAIRVL  288 (385)
Q Consensus       215 ~~ggi~~Lv~lL~~~~----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~-A~~aL~~L  288 (385)
                      +.+.++.|++-+..-.    ++..-+..++.++-|+..-.+...+.+++.|.+..|+.-+... ..+.-+. |.-.|..+
T Consensus       174 dg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLail  253 (536)
T KOG2734|consen  174 DGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAIL  253 (536)
T ss_pred             hccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence            6777888888775432    2333456778888888777777778888888888887755433 3344443 44444444


Q ss_pred             cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC--CH------HHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639          289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SS------PSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (385)
Q Consensus       289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~--~~------~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv  360 (385)
                      .-+.+         ++++.+-...||..+++-+..+.  +|      ...++++--|..+.--.+++..+....|+....
T Consensus       254 lq~s~---------e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~  324 (536)
T KOG2734|consen  254 LQNSD---------ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMN  324 (536)
T ss_pred             hccCc---------hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHH
Confidence            33222         24445667889999988876654  32      456677777766666778999999999999875


Q ss_pred             HHHHh
Q 016639          361 RCIDD  365 (385)
Q Consensus       361 ~ll~~  365 (385)
                      -+|+.
T Consensus       325 Lmlr~  329 (536)
T KOG2734|consen  325 LMLRE  329 (536)
T ss_pred             HHHHH
Confidence            55553

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.79  E-value=1.8  Score=47.95  Aligned_cols=232  Identities=16%  Similarity=0.142  Sum_probs=140.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC-Cc----HhHHHHHHHHHHHHhcCCcc---c--h
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC-GS----KRVLDSCLKTMALLVHDVQS---T--E  211 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~-~d----~~vl~~Al~aLa~L~~~~~~---~--~  211 (385)
                      ..+.+...+.-|+..|+   -+.||..+.+.|+++.|++.|..... +.    ..+.+..+..+-.|+.....   .  .
T Consensus       135 ~~~ll~~llkLL~~c~K---v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~  211 (802)
T PF13764_consen  135 GRELLQVLLKLLRYCCK---VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESK  211 (802)
T ss_pred             cHHHHHHHHHHHHHHHh---hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            56777888888999998   49999999999999999998753221 12    34555555555555443211   0  1


Q ss_pred             hHhhCCC--------cHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC----hHH
Q 016639          212 TFRTGGG--------PKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR----NDS  277 (385)
Q Consensus       212 ~i~~~gg--------i~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~----~~v  277 (385)
                      ......|        +..+++.+.+.  ..++.+....+++|-+++.|+++..+.+++.  ..+.+. +...+    .+-
T Consensus       212 ~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~-f~~~D~~~~~~~  288 (802)
T PF13764_consen  212 SSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLD-FDKFDEEHSPDE  288 (802)
T ss_pred             ccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcC-hhhcccccCchH
Confidence            1122233        66666666543  2478899999999999999999887777652  122222 11111    111


Q ss_pred             HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-C------H--------HHHHHHHHHHHHhhc
Q 016639          278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-S------S--------PSLISASIALKAVAV  342 (385)
Q Consensus       278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~------~--------~v~~~a~~aL~~La~  342 (385)
                       +--..+++.++.+=.. -..|.  .=...|.+.|++...++.|..+. .      +        ..+..++..|.-||.
T Consensus       289 -~~~Le~F~~i~~~I~~-~~~G~--~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~  364 (802)
T PF13764_consen  289 -QFKLECFCEIAEGIPN-NSNGN--RLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLAR  364 (802)
T ss_pred             -HHHHHHHHHHHhcCCC-CCchH--HHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHh
Confidence             1123344444421110 00111  11334668999999999997753 1      1        235678889999999


Q ss_pred             ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       343 ~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      ..+-++.+++.++|+.+-.+=+-.++..-=.++..++..|+
T Consensus       365 gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~  405 (802)
T PF13764_consen  365 GHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA  405 (802)
T ss_pred             cCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence            88888888888999766544333222222345666655554

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.72  E-value=2.4  Score=43.05  Aligned_cols=208  Identities=7%  Similarity=0.008  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHH------HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAAVAT------KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG  216 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~------~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~  216 (385)
                      .+.+.-.|.-+.+....  ++..-.++.      +.-..+..+.+|..   .+.-+.....+.++.+....   ...++.
T Consensus        80 dd~v~yvL~li~DmLs~--d~sr~~lf~~~a~~~k~~~~~~fl~ll~r---~d~~iv~~~~~Ils~la~~g---~~~~~~  151 (442)
T KOG2759|consen   80 DDTVQYVLTLIDDMLSE--DRSRVDLFHDYAHKLKRTEWLSFLNLLNR---QDTFIVEMSFRILSKLACFG---NCKMEL  151 (442)
T ss_pred             HHHHHHHHHHHHHHHhh--CchHHHHHHHHHHhhhccchHHHHHHHhc---CChHHHHHHHHHHHHHHHhc---cccccc
Confidence            34556666666666664  333222221      12336778888877   35555554667777665432   122333


Q ss_pred             CCcHH----HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH-ccC-ChHHHHHHHHHHHHhcC
Q 016639          217 GGPKL----LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-SRQ-RNDSIQSLYDAIRVLLT  290 (385)
Q Consensus       217 ggi~~----Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL-~~~-~~~v~k~A~~aL~~Lt~  290 (385)
                      +-...    |-..|.+. .+..-...+.++|.-+. ..++.|-.++.+.|+..++.+| .++ +...+=..+-+++-||+
T Consensus       152 ~e~~~~~~~l~~~l~~~-~~~~~~~~~~rcLQ~ll-~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF  229 (442)
T KOG2759|consen  152 SELDVYKGFLKEQLQSS-TNNDYIQFAARCLQTLL-RVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF  229 (442)
T ss_pred             hHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHh-cCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            23333    33344442 34444556677888765 5677999999999999999999 443 33666678999999998


Q ss_pred             CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-------HHHHHHHHcCcHHHHHHHH
Q 016639          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-------EICKSVAENGGIDALLRCI  363 (385)
Q Consensus       291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-------e~c~~I~e~GGl~~Lv~ll  363 (385)
                      +...          |..+..-+.|+.|.++++......|.+-++.++.|+....       +.+..++.++.++.+--+.
T Consensus       230 n~~~----------ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~  299 (442)
T KOG2759|consen  230 NPHA----------AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE  299 (442)
T ss_pred             CHHH----------HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence            6442          2234456889999999988655568888999999998654       7788888877777775544


Q ss_pred             HhcCCcC
Q 016639          364 DDSGLQG  370 (385)
Q Consensus       364 ~~~~~~~  370 (385)
                      ....+++
T Consensus       300 ~rkysDE  306 (442)
T KOG2759|consen  300 ERKYSDE  306 (442)
T ss_pred             hcCCCcH
Confidence            4443433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=95.66  E-value=0.12  Score=52.96  Aligned_cols=139  Identities=13%  Similarity=0.177  Sum_probs=104.3

Q ss_pred             chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHh
Q 016639          210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVL  288 (385)
Q Consensus       210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~L  288 (385)
                      ++.+...||++.|++++....-...+...+.++|..+..  -+|+..|+..| +..++.+-+... .+.++..+..|-+|
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            357888999999999998754455667788899988653  46899999877 555555444433 36777788888888


Q ss_pred             cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHH
Q 016639          289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLR  361 (385)
Q Consensus       289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~  361 (385)
                               |-++.+-+..+++.|||..++---+. .++.++..+..+|.|++..  .+....|++.-.-+-|.-
T Consensus       250 ---------FKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~  314 (832)
T KOG3678|consen  250 ---------FKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP  314 (832)
T ss_pred             ---------hhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence                     45555777889999999998765555 3788999999999999876  366677887776666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.65  E-value=0.061  Score=41.72  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=60.8

Q ss_pred             hHHHHHHH-ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          263 DELILEIL-SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       263 i~~Lv~lL-~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      |+.|++.| .+.+..++.+++++|..+-                    ....++.|++++++ .++.++..++.+|..+.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------------------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--------------------DPEAIPALIELLKD-EDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------------------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence            57899999 5555678888888888331                    11348999999965 48889999999999884


Q ss_pred             cChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639          342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (385)
Q Consensus       342 ~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L  382 (385)
                                .-..++.|.+++.+.   .+..+-+.|...|
T Consensus        60 ----------~~~~~~~L~~~l~~~---~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 ----------DPEAIPALIKLLQDD---DDEVVREAAAEAL   87 (88)
T ss_dssp             ----------HHHTHHHHHHHHTC----SSHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCC---CcHHHHHHHHhhc
Confidence                      234788888888772   2334556666554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.2  Score=52.14  Aligned_cols=189  Identities=12%  Similarity=0.055  Sum_probs=121.6

Q ss_pred             hHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 016639          165 NAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV  243 (385)
Q Consensus       165 ~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L  243 (385)
                      -|.-..++...++|+.+|+.   ++..+--.++..+.+....-.+ +.-+++.+-|..++.++.+  .+..+++...|++
T Consensus       423 LRTgL~d~~I~elLi~~Ls~---Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s--KDdaLqans~wvl  497 (743)
T COG5369         423 LRTGLLDYPIVELLIDALSN---PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS--KDDALQANSEWVL  497 (743)
T ss_pred             HHhhccccchHHHHHHHhcC---ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc--chhhhhhcchhhh
Confidence            34445666778899999976   2445555555666665443222 4677889999999999985  4778999999999


Q ss_pred             HHHhcCChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhh----chhHHHHHHhcCcHHHHH
Q 016639          244 AASATGNEVV-KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ----VYGYARRFAKIGIARALV  318 (385)
Q Consensus       244 ~~~~~~~e~n-r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~----a~~~a~~I~e~Ggi~~Lv  318 (385)
                      +++..++.++ +-.+.+.-++..+++........|+......|||+|.+..-... +.    ...-.+++.     +.|+
T Consensus       498 rHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEk-skdv~~K~~p~~ylf-----k~l~  571 (743)
T COG5369         498 RHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEK-SKDVFIKATPRRYLF-----KRLI  571 (743)
T ss_pred             hhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccc-cceeEEecChHHHHH-----HHHH
Confidence            9998877665 33566778899999988777668999999999999974321000 00    011122333     4677


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHc-CcHHHHHHHHHh
Q 016639          319 HSLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN-GGIDALLRCIDD  365 (385)
Q Consensus       319 ~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~-GGl~~Lv~ll~~  365 (385)
                      +-++.. ++-.....|-.|-++|. +++....|.+- .-++.+.+.|..
T Consensus       572 ~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e  619 (743)
T COG5369         572 DKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE  619 (743)
T ss_pred             HHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence            777774 44223344666666554 44555444432 345555555543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.49  E-value=0.023  Score=40.68  Aligned_cols=54  Identities=9%  Similarity=0.007  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639          234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL  288 (385)
Q Consensus       234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~L  288 (385)
                      .+...++++|.+++...... ..-....+++.|+.+|++.+..|+.+||++|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46778999999876554443 3334568999999999988889999999999865

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.32  E-value=0.067  Score=43.96  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh
Q 016639          147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR  214 (385)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~  214 (385)
                      +..++.|..+|-.  ++.+...+.+.||+|.+++.|.-- +.++-+.++|+.++-+|+.|++..+.++
T Consensus         4 ~~lvrlianl~~~--~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I   68 (102)
T PF09759_consen    4 RDLVRLIANLCYK--NKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFI   68 (102)
T ss_pred             HHHHHHHHHHHhC--CHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3567788889987  999999999999999999998653 3578899999999999999987655553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PTZ00429 beta-adaptin; Provisional

Probab=95.25  E-value=6.1  Score=43.60  Aligned_cols=55  Identities=7%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ++-|.+.|+-++..+-..++   +.+.+.|.++.|.++|...+..|+.+|..+|..+.
T Consensus       153 ~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~  207 (746)
T PTZ00429        153 DPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN  207 (746)
T ss_pred             CHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            45555555555555433222   23344555666666655555456666666665554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=1  Score=50.59  Aligned_cols=181  Identities=15%  Similarity=0.092  Sum_probs=103.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi  219 (385)
                      +..+-..+|.+|..+..+  ....  +... -..++.++..|+.   +++.|.-.||++++-++++=.. .+......-+
T Consensus       361 ~w~~R~AaL~Als~i~EG--c~~~--m~~~l~~Il~~Vl~~l~D---phprVr~AA~naigQ~stdl~p~iqk~~~e~l~  433 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAEG--CSDV--MIGNLPKILPIVLNGLND---PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP  433 (1075)
T ss_pred             CHHHHHHHHHHHHHHHcc--cHHH--HHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence            444556666677776554  2221  1111 1233444444544   6889999999999999886332 1333445667


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---CCChHHHH-HHHccCChHHHHHHHHHHHHhcCCCccc
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME---LKIDELIL-EILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~---~G~i~~Lv-~lL~~~~~~v~k~A~~aL~~Lt~~Dd~r  295 (385)
                      +.|+..|.+ ..+..++..|+.++-+....+.   ..++.   -+.+.+++ .++.+++..++..+..+|.+.+..-.. 
T Consensus       434 ~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~-  508 (1075)
T KOG2171|consen  434 PALIALLDS-TQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE-  508 (1075)
T ss_pred             HHHHHHhcc-cCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-
Confidence            788888876 5688999999998888654433   33332   23444222 344556667777788888888632111 


Q ss_pred             hhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH---HHHHH--HHHHHHHhhcC
Q 016639          296 VVASQVYGYARRFAKIGIARALVHSLHAGLSS---PSLIS--ASIALKAVAVN  343 (385)
Q Consensus       296 v~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~---~v~~~--a~~aL~~La~~  343 (385)
                       .|      ..+.  .-.+|.|...|....++   .++..  -|..+-..|++
T Consensus       509 -~F------~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG  552 (1075)
T KOG2171|consen  509 -KF------IPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG  552 (1075)
T ss_pred             -hh------HhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence             10      1111  12467777777775422   22222  34455556665

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.02  E-value=1.2  Score=45.03  Aligned_cols=190  Identities=13%  Similarity=0.134  Sum_probs=122.4

Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHH--HHHHhcCCcc--chhHhhCCCcHHHHH
Q 016639          149 LFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT--MALLVHDVQS--TETFRTGGGPKLLVN  224 (385)
Q Consensus       149 al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~a--La~L~~~~~~--~~~i~~~ggi~~Lv~  224 (385)
                      ++..|......  .+..-..+..+||+..++..++..      +- .++.-  ...-..+.+.  .....+.--|+.   
T Consensus         4 av~~ld~~~~~--~~~a~~~f~~~~G~~~li~rl~~E------v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---   71 (379)
T PF06025_consen    4 AVRFLDTFIDS--SPDAFAAFRNLNGLDILIDRLQYE------VD-FALEENKNEEAGSGIPPEYKESSVDGYSISY---   71 (379)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHhCCCHHHHHHHHHHH------HH-HHHhcccccCCCCCCCCCcccccccccccCH---
Confidence            44555555554  566667778899999999999752      11 11110  0010111100  011111000111   


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhc---CChhhHHHHHh-CCChHHHHHHHccCCh---HHHHHHHHHHHHhcCCCccchh
Q 016639          225 ILIDGNEDPEILNSGFAVVAASAT---GNEVVKESYME-LKIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVV  297 (385)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~~~~---~~e~nr~~iv~-~G~i~~Lv~lL~~~~~---~v~k~A~~aL~~Lt~~Dd~rv~  297 (385)
                            ....+.+.-++.+..+..   ++...-..+++ .-.+..|..+|++...   .+.-.|...+.....+|.-..+
T Consensus        72 ------~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   72 ------QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             ------HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence                  122344455666666555   44555556777 5566777777777433   7888899999999888875544


Q ss_pred             hhhchhHHHHHHhcCcHHHHHHHHh-cCC--CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639          298 ASQVYGYARRFAKIGIARALVHSLH-AGL--SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       298 ~g~a~~~a~~I~e~Ggi~~Lv~lL~-~~~--~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                               .|.+.|.++.+++.+. ...  +.+++..+=.+|..+|.|+...+.+.+.+.++.+++++.+
T Consensus       146 ---------~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  146 ---------ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             ---------HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence                     4679999999999999 433  5678888888999999999999999999999999887654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.35  Score=53.91  Aligned_cols=135  Identities=16%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHH----hCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639          235 ILNSGFAVVAASATGNEVVKESYM----ELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (385)
Q Consensus       235 v~~~a~~~L~~~~~~~e~nr~~iv----~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~  309 (385)
                      -+.-++-+|+|+.+.+++-...|-    =.|..+.+..+|+.++. .+++-|..++.-+|.+.+. +         ..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v---------~~~a 1810 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-V---------TDLA 1810 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-H---------HHHH
Confidence            456778899999888885433222    13788999999998865 5777777777777765553 2         3589


Q ss_pred             hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +.|.+..|+.+|.+.  +....-++.+|..|+.+.++..+-.+.||+.-|..++-.....   ..-.++..++-+
T Consensus      1811 ~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~---QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1811 TCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSD---QQRAQAAELLAK 1880 (2235)
T ss_pred             hhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcH---HHHHHHHHHHHH
Confidence            999999999999774  5567788999999999999999999999999998877654332   344555555544

>TIGR02270 conserved hypothetical protein

Probab=94.90  E-value=2.9  Score=42.79  Aligned_cols=90  Identities=8%  Similarity=-0.066  Sum_probs=63.6

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      ++.+.|+.+|++   .++.+...++.+++...           ....+.+..+|++  .+..+...++++|..+.  .  
T Consensus       117 ~a~~~L~~~L~~---~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d--~d~~Vra~A~raLG~l~--~--  176 (410)
T TIGR02270       117 QAEPWLEPLLAA---SEPPGRAIGLAALGAHR-----------HDPGPALEAALTH--EDALVRAAALRALGELP--R--  176 (410)
T ss_pred             HHHHHHHHHhcC---CChHHHHHHHHHHHhhc-----------cChHHHHHHHhcC--CCHHHHHHHHHHHHhhc--c--
Confidence            357778888876   47777777776666421           1234678888873  67888899999987653  2  


Q ss_pred             hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                             ...++.|..++.+.+..|...|.+++.-+-
T Consensus       177 -------~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       177 -------RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             -------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                   246677888888888788888888886663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.82  E-value=0.51  Score=45.15  Aligned_cols=97  Identities=12%  Similarity=0.125  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK  310 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e  310 (385)
                      .......|+++|.-+|.-|+..|..+.+...+..|+.+|... ...++.++..+|..+..|.         +.|.+.+-+
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~---------p~N~r~FE~  174 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS---------PENQRDFEE  174 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC---------hHHHHHHHH
Confidence            344567788999999999999999999999999999999543 4467777777777776543         477888889


Q ss_pred             cCcHHHHHHHHhcCC-CHHHHHHHHHHH
Q 016639          311 IGIARALVHSLHAGL-SSPSLISASIAL  337 (385)
Q Consensus       311 ~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL  337 (385)
                      .+|+..++.+++... +.++.-.+...|
T Consensus       175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL  202 (257)
T PF08045_consen  175 LNGLSTVCSLLKSKSTDRELRLKCIEFL  202 (257)
T ss_pred             hCCHHHHHHHHccccccHHHhHHHHHHH
Confidence            999999999999865 555543433333

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.51  E-value=0.34  Score=51.58  Aligned_cols=154  Identities=12%  Similarity=0.155  Sum_probs=105.7

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCC--------CcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVAA  245 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~~  245 (385)
                      ++|.|+++|.+   .|....+.|+.+|.-++.+.   ..+.+..        -+|.++++.++  +++++.+.|..++-.
T Consensus       129 lLp~L~~~L~s---~d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h--~spkiRs~A~~cvNq  200 (885)
T KOG2023|consen  129 LLPQLCELLDS---PDYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKH--PSPKIRSHAVGCVNQ  200 (885)
T ss_pred             HHHHHHHHhcC---CcccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhC--CChhHHHHHHhhhhh
Confidence            47889999987   46678889999999998765   4555542        36777777775  478898888888765


Q ss_pred             HhcCChhhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-h-cCcHHHHHHHH
Q 016639          246 SATGNEVVKESYME--LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHSL  321 (385)
Q Consensus       246 ~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e-~Ggi~~Lv~lL  321 (385)
                      ....   +-++++.  -..++.|..+-...+++|+|+.|.++.-|..   .|..         .|+ . .++++.++..-
T Consensus       201 ~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~d---------kl~phl~~IveyML~~t  265 (885)
T KOG2023|consen  201 FIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPD---------KLVPHLDNIVEYMLQRT  265 (885)
T ss_pred             eeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHH---------hcccchHHHHHHHHHHc
Confidence            4322   2244442  1344555555544456999999999999863   2322         344 2 35667776665


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcChHHHHHHHH
Q 016639          322 HAGLSSPSLISASIALKAVAVNDEICKSVAE  352 (385)
Q Consensus       322 ~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e  352 (385)
                      +.+ |.+|.-++|.....+|..+ +|..+..
T Consensus       266 qd~-dE~VALEACEFwla~aeqp-i~~~~L~  294 (885)
T KOG2023|consen  266 QDV-DENVALEACEFWLALAEQP-ICKEVLQ  294 (885)
T ss_pred             cCc-chhHHHHHHHHHHHHhcCc-CcHHHHH
Confidence            554 6778889999999999877 7766654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.22  E-value=1.5  Score=48.47  Aligned_cols=251  Identities=15%  Similarity=0.164  Sum_probs=141.0

Q ss_pred             HHHHhhHHhcCCChhHHHHHHHHH-HHH--cCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 016639           71 EVVKENMEDLGMEPTEALQDAIQT-LSL--QGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMM  147 (385)
Q Consensus        71 ~~v~eni~~f~m~~~eAl~~aI~q-fe~--QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~  147 (385)
                      =+|..||-.++++..++    .++ |..  ||-.+ .|+-..+|-..+++.|.++.|       ++..  -++.++++.-
T Consensus        42 LlV~~~IisldL~v~~V----y~~vW~~~~~~~pM-~v~YR~~Gl~geAtE~~v~~l-------~~~~--~~~~d~e~~~  107 (802)
T PF13764_consen   42 LLVNNKIISLDLPVRDV----YEKVWKPNNQNPPM-RVVYRMRGLDGEATEEFVESL-------EDDS--EEEEDPEQEF  107 (802)
T ss_pred             eeecCeeecCCCcHHHH----HHHHhcccCCCCCe-EEEEeecCCCCccchhhHhhc-------cCcc--ccccCHHHHH
Confidence            36778888888876554    444 432  44333 445555665555544553322       2210  0111222111


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC--CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH
Q 016639          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI  225 (385)
Q Consensus       148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~--~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l  225 (385)
                      ..                -..+.+-||+..|+.++.+..+  .+..++...++-|...+.-..+++.+++.++++.|++.
T Consensus       108 ~~----------------~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~  171 (802)
T PF13764_consen  108 KI----------------ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSV  171 (802)
T ss_pred             HH----------------HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHH
Confidence            11                1123556889999999987542  23566666777777766555557899999999999999


Q ss_pred             HhcCCC------CHHHHHHHHHHHHHHhcCChhhHHHHH------hCCC--------hHHHHHHHccCC----hHHHHHH
Q 016639          226 LIDGNE------DPEILNSGFAVVAASATGNEVVKESYM------ELKI--------DELILEILSRQR----NDSIQSL  281 (385)
Q Consensus       226 L~~~~~------~~~v~~~a~~~L~~~~~~~e~nr~~iv------~~G~--------i~~Lv~lL~~~~----~~v~k~A  281 (385)
                      |+....      ..++...-+.++..+..  |.+...+-      ...+        +..+++.+.+..    ..+.+..
T Consensus       172 L~~~l~~~~~~~~~~i~E~LL~IiE~ll~--ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l  249 (802)
T PF13764_consen  172 LNRALQANQNSSQAEIAEQLLEIIESLLS--EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQAL  249 (802)
T ss_pred             HHHHHhCccccccchHHHHHHHHHHHHHH--HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHH
Confidence            963211      25666666666665543  33333221      1222        667777776542    3778889


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-----CH-HHHHHHHHHHHHhhcC---hHHHHHHHH
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-----SS-PSLISASIALKAVAVN---DEICKSVAE  352 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-----~~-~v~~~a~~aL~~La~~---~e~c~~I~e  352 (385)
                      ++.|-+||.+++.+..         .++++  .++.+++ ..+.     +. -.+...|.+..++-.+   +..++.|.+
T Consensus       250 ~RiLP~Lt~G~~e~m~---------~Lv~~--F~p~l~f-~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~  317 (802)
T PF13764_consen  250 ARILPFLTYGNEEKMD---------ALVEH--FKPYLDF-DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE  317 (802)
T ss_pred             HHHhhHHhcCCHHHHH---------HHHHH--HHHhcCh-hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            9999999988875432         34432  2344332 2211     01 1233444444444222   466778888


Q ss_pred             cCcHHHHHHHHHh
Q 016639          353 NGGIDALLRCIDD  365 (385)
Q Consensus       353 ~GGl~~Lv~ll~~  365 (385)
                      .|.+...++.|..
T Consensus       318 ~GIv~~a~~YL~~  330 (802)
T PF13764_consen  318 SGIVQDAIDYLLK  330 (802)
T ss_pred             hhHHHHHHHHHHH
Confidence            8888876666554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.20  E-value=3.1  Score=41.02  Aligned_cols=227  Identities=14%  Similarity=0.044  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHH-HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh-CCCcHHHHH
Q 016639          147 MGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVN  224 (385)
Q Consensus       147 ~~al~~L~~lc~~~~~~~~r~~~-~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~-~ggi~~Lv~  224 (385)
                      -=++.++..+.-   .+++|.++ +++-.-..++++++.+- ++..++-..|-.++-++-....-+++-. ..-+..|++
T Consensus       167 lfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~v-g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~  242 (432)
T COG5231         167 LFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYV-GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA  242 (432)
T ss_pred             HHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            344566666655   58888866 56666678999998753 5677888888888877665332222211 234566777


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHh--------cCCCc
Q 016639          225 ILIDGNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVL--------LTPDD  293 (385)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv~lL~~--~~~~v~k~A~~aL~~L--------t~~Dd  293 (385)
                      +.+.. ...+|.+.+|..+.++|.+.+ ..+....-.|-+.+-|++|..  .+++-...=..-|+..        +.-|.
T Consensus       243 iVk~~-~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         243 IVKER-AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            77652 356889999999999997442 223333345545566666643  3444444433334432        21111


Q ss_pred             cchh-------hhh-------chhHHHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcH
Q 016639          294 DQVV-------ASQ-------VYGYARRFAKI--GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGI  356 (385)
Q Consensus       294 ~rv~-------~g~-------a~~~a~~I~e~--Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl  356 (385)
                      ...+       -|-       =++|+.++.+.  ..++.|..+|++..+...+.-||.-+..+.. .+|...-+..-||=
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k  401 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK  401 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence            1111       111       14889999865  4789999999996422244566776666653 47999999999999


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639          357 DALLRCIDDSGLQGNKTVARICCSLL  382 (385)
Q Consensus       357 ~~Lv~ll~~~~~~~~~~v~k~a~~~L  382 (385)
                      ..++++|.. +++   +|-=+|++++
T Consensus       402 ~~im~L~nh-~d~---~VkfeAl~a~  423 (432)
T COG5231         402 EIIMNLINH-DDD---DVKFEALQAL  423 (432)
T ss_pred             HHHHHHhcC-CCc---hhhHHHHHHH
Confidence            999999864 333   4555555544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=93.66  E-value=2.4  Score=42.87  Aligned_cols=121  Identities=24%  Similarity=0.300  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~  309 (385)
                      +.++...|.++++++.. ++...+.+.+.++--.++..|.....  .....|...+|.+..-++.-           .-.
T Consensus        38 ~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-----------~~~  105 (371)
T PF14664_consen   38 SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-----------KEI  105 (371)
T ss_pred             cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-----------ccC
Confidence            48999999999999764 66778889999988888988977543  33345888888875321100           012


Q ss_pred             hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcC
Q 016639          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG  367 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~  367 (385)
                      -.|.+..++.+.... ++....-+..+|..+++.++  ..+.++||+..|++.+.+++
T Consensus       106 ~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~  160 (371)
T PF14664_consen  106 PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGS  160 (371)
T ss_pred             CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhcc
Confidence            346788889888774 44566677778999988653  45678999999999998743

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=92.87  E-value=0.18  Score=35.93  Aligned_cols=54  Identities=15%  Similarity=0.000  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      .++..|+++|.+++..-.         +.... ....+++.|+.+|+.. ++.|...+|++|++|
T Consensus         2 ~vR~~A~~aLg~l~~~~~---------~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCP---------ELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTH---------HHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccH---------HHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            467889999998764222         11122 2245789999999774 668999999999875

...

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=92.68  E-value=2.3  Score=37.76  Aligned_cols=117  Identities=9%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             HHHHhCCChHHHHHHHccCCh------HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CH
Q 016639          255 ESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS  327 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~  327 (385)
                      +.|+..||+..|+.++..+..      +....+..++..|---+-+--          ......-|..++....... +.
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW----------d~l~~~FI~Kia~~Vn~~~~d~   74 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW----------DTLSDSFIKKIASYVNSSAMDA   74 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch----------hhccHHHHHHHHHHHccccccc
Confidence            578899999999999999873      445445555555531111000          1222334677777777655 77


Q ss_pred             HHHHHHHHHHHHhhcChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          328 PSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       328 ~v~~~a~~aL~~La~~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .++..++..|.++..+.. ....|.+.=-++.|+..|+.    .|++++..+.++|-+|
T Consensus        75 ~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~----~~~~iq~naiaLinAL  129 (160)
T PF11841_consen   75 SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV----SNQEIQTNAIALINAL  129 (160)
T ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence            888999999999998865 47777777788889999987    3347999999888654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=92.67  E-value=0.34  Score=50.48  Aligned_cols=139  Identities=8%  Similarity=-0.001  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc
Q 016639          193 LDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS  271 (385)
Q Consensus       193 l~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~  271 (385)
                      ...++..|-+++..... |.-+.+..-.++|+++|..  ++.-|...+...+.+....-..-+.-+.+.|.|+.|+..+.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            33344455555443211 2344567788899999975  22333444555666666666767778889999999999998


Q ss_pred             cCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       272 ~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                      +.++..+++..|++|.|..+++.-..        -.+...-|+..++++-... +=.++...+..|+|+..
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ek--------f~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc  545 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEK--------FKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTC  545 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhh--------hhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhccc
Confidence            87778888999999999988875432        1333445677788775442 33688899999999976

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=92.60  E-value=0.86  Score=42.06  Aligned_cols=177  Identities=11%  Similarity=0.034  Sum_probs=83.4

Q ss_pred             CcHhHHHHHHHHHHHHhcCC---ccchhHhhC--CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639          188 GSKRVLDSCLKTMALLVHDV---QSTETFRTG--GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI  262 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~L~~~~---~~~~~i~~~--ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~  262 (385)
                      .+.+....|+..|..++.+.   +..+.+.+.  .-+..+...+.+  ....+...||.++..++..-...-..+ -...
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d--~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD--LRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H--H---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            45666777777777777665   111222211  223334444432  245788899999888775433322222 2457


Q ss_pred             hHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       263 i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                      +|.|+..+.+.+..+.+.|..+|..+...-.               .....+..++.....+.++.+...++..|..+..
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~  160 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCS---------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILE  160 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS----------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCC---------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            7888888888776666778888888763211               0011213333333333477777777776766654


Q ss_pred             ChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHH---HHHHHHHH
Q 016639          343 NDE-ICKSVAENGGIDALLRCIDDSGLQGNKTV---ARICCSLL  382 (385)
Q Consensus       343 ~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v---~k~a~~~L  382 (385)
                      ... ....+...+.++.++..+..+-.+.+.+|   +|.++..+
T Consensus       161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL  204 (228)
T ss_dssp             T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            432 12222222334555555554444444444   44444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.46  E-value=2.4  Score=37.74  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC------CcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcH
Q 016639          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC------GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK  220 (385)
Q Consensus       148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~------~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~  220 (385)
                      +.+..|+...+. .....-..+.+.||+..|+.+|.....      .+......++++|-+|++.......++ ..+++.
T Consensus        83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence            777788887776 344555577889999999999865431      234677788888888887654344555 467788


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASA  247 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (385)
                      .++..|.+  .+..+...++-.|..+|
T Consensus       162 ~i~~~L~s--~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDS--PNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--T--TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC--CCHHHHHHHHHHHHHHH
Confidence            88888864  56788888888887776

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>TIGR02270 conserved hypothetical protein

Probab=92.45  E-value=6.3  Score=40.38  Aligned_cols=120  Identities=13%  Similarity=0.028  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (385)
Q Consensus       175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (385)
                      +..|+..|..   .++.+...+..+|+-+-.          .+..+.|+.+|++  +++.+...++.++..         
T Consensus        88 ~~~L~~~L~d---~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~--~~p~vR~aal~al~~---------  143 (410)
T TIGR02270        88 LRSVLAVLQA---GPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAA--SEPPGRAIGLAALGA---------  143 (410)
T ss_pred             HHHHHHHhcC---CCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcC--CChHHHHHHHHHHHh---------
Confidence            7788888876   466688878888875321          2345778888864  466666665544432         


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHH
Q 016639          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~  334 (385)
                         ......+.++.+|++.+..|..+|+.+|..|-.                    ...++.|...+.. .++.|...+.
T Consensus       144 ---r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------------------~~a~~~L~~al~d-~~~~VR~aA~  199 (410)
T TIGR02270       144 ---HRHDPGPALEAALTHEDALVRAAALRALGELPR--------------------RLSESTLRLYLRD-SDPEVRFAAL  199 (410)
T ss_pred             ---hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------------ccchHHHHHHHcC-CCHHHHHHHH
Confidence               112245688999987777888888888876632                    3345667766655 3777877777


Q ss_pred             HHHHHhhc
Q 016639          335 IALKAVAV  342 (385)
Q Consensus       335 ~aL~~La~  342 (385)
                      .+|..+..
T Consensus       200 ~al~~lG~  207 (410)
T TIGR02270       200 EAGLLAGS  207 (410)
T ss_pred             HHHHHcCC
Confidence            77766644

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.41  E-value=4.8  Score=43.81  Aligned_cols=171  Identities=12%  Similarity=-0.033  Sum_probs=101.1

Q ss_pred             CcHHHHHHHHh-cccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639          173 GGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (385)
Q Consensus       173 Gaip~Lv~lL~-~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (385)
                      ..+|+.+...+ +...+|.+-...|.-+++++..|.+. +-.-+-.+++|.++.++.+  +..-+...+.|.+..++...
T Consensus       360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D--~sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD--PSLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC--chhhhcchHHHHHHHHHhhc
Confidence            34666766665 44446778888889999999999764 3444678999999999984  34455678899999988765


Q ss_pred             hhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHhcC--CCccchhhhhc-hhHHHHHHhcCcHHHHHHHHhcCC-
Q 016639          251 EVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQV-YGYARRFAKIGIARALVHSLHAGL-  325 (385)
Q Consensus       251 e~nr~~iv-~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~--~Dd~rv~~g~a-~~~a~~I~e~Ggi~~Lv~lL~~~~-  325 (385)
                      .+.+-.-. -.+.++.++.-|.... .+..++||++-+|+-  -+-.+.. |.+ +..  -+. .-+|..|+..-.... 
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~DeP-rva~N~CWAf~~Laea~~eA~~s~-~qt~~~t--~~y-~~ii~~Ll~~tdr~dg  512 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLNDEP-RVASNVCWAFISLAEAAYEAAVSN-GQTDPAT--PFY-EAIIGSLLKVTDRADG  512 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHhccCC-CCCCccc--hhH-HHHHHHHHhhcccccc
Confidence            53322222 2234444555454433 688899999999961  1111100 000 000  000 012333333322211 


Q ss_pred             -CHHHHHHHHHHHHHhhcCh-HHHHHH
Q 016639          326 -SSPSLISASIALKAVAVND-EICKSV  350 (385)
Q Consensus       326 -~~~v~~~a~~aL~~La~~~-e~c~~I  350 (385)
                       ....+..+..+|..|..+. ..|-.+
T Consensus       513 nqsNLR~AAYeALmElIk~st~~vy~~  539 (859)
T KOG1241|consen  513 NQSNLRSAAYEALMELIKNSTDDVYPM  539 (859)
T ss_pred             chhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence             2356778888998887663 555444

>PTZ00429 beta-adaptin; Provisional

Probab=91.78  E-value=24  Score=39.01  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-------CcHH----HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-------GGVE----LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST  210 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-------Gaip----~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~  210 (385)
                      .++...-++..|+.=|.. .+|-.|..+.+.       ..++    .+...|..   .++-|...|.-++..+-..++  
T Consensus        99 ~pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D---~~pYVRKtAalai~Kly~~~p--  172 (746)
T PTZ00429         99 QPEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD---PDPYVRKTAAMGLGKLFHDDM--  172 (746)
T ss_pred             ChHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhCc--
Confidence            344444555555544443 355555555432       1223    33344433   578899999999998866442  


Q ss_pred             hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 016639          211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT  248 (385)
Q Consensus       211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~  248 (385)
                      +.+.+.+=++.|.++|.+  .++.|+..|+.+|..++.
T Consensus       173 elv~~~~~~~~L~~LL~D--~dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        173 QLFYQQDFKKDLVELLND--NNPVVASNAAAIVCEVND  208 (746)
T ss_pred             ccccccchHHHHHHHhcC--CCccHHHHHHHHHHHHHH
Confidence            234456778999998874  689999999999988753

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=91.75  E-value=13  Score=35.73  Aligned_cols=207  Identities=12%  Similarity=0.009  Sum_probs=124.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHH-HHcCcHHHHHHHH-hccc---C-----CcHhHHHHHHHHHHHHhcCCccch
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCSIC-YKMR---C-----GSKRVLDSCLKTMALLVHDVQSTE  211 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~-~~~Gaip~Lv~lL-~~~~---~-----~d~~vl~~Al~aLa~L~~~~~~~~  211 (385)
                      +++.-.+|+.+|+.--..  .++-...+ ..-|.+..|++=. +-..   +     ....-.++|+.-|-.++.+++.+.
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~   85 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM   85 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH
Confidence            344445555555544332  33322233 3346666665522 2110   0     011335666666666677777788


Q ss_pred             hHhhCCCcHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 016639          212 TFRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATGNEV-VKESYMELKIDELILEILSRQRNDSIQSLYDAIRV  287 (385)
Q Consensus       212 ~i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~~~~~~e~-nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~  287 (385)
                      .|+++.-+-.|.-+|+.....   ..+.-.++.+++.+...++. ...-+....++|..+..|..|+.-...-|.-.+-.
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999988888888764433   23456778888887653332 33344578999999999999986444446666666


Q ss_pred             hcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHH
Q 016639          288 LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE  352 (385)
Q Consensus       288 Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e  352 (385)
                      +-.+|+--.-+-++++.-..++.  ++..++.-|....++.+++.+.+.-.+|+-++..|..+..
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            76666544334444555554543  5677777776655788999999999999998888877764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.35  E-value=0.76  Score=38.83  Aligned_cols=73  Identities=18%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      ..++.|...+..+      .++..+.-|+..|...++-  .|..|.++.+.|+=..+++||.+   .|+++.-.||.++.
T Consensus        43 ~llk~L~~lL~~s------~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   43 ELLKKLIKLLDKS------DDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNH---EDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHHH-SH------HHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS----SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccC------CCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence            4577788887542      1778888899999999997  89999999999999999999988   59999999999998


Q ss_pred             HHhc
Q 016639          202 LLVH  205 (385)
Q Consensus       202 ~L~~  205 (385)
                      -+..
T Consensus       112 klm~  115 (119)
T PF11698_consen  112 KLMV  115 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.33  E-value=2.9  Score=45.40  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=90.9

Q ss_pred             cCcHHHHHHHHhcccCCc-H------hHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHH--HHHHHHHH
Q 016639          172 NGGVELVCSICYKMRCGS-K------RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE--ILNSGFAV  242 (385)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~d-~------~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~--v~~~a~~~  242 (385)
                      .+.+|.|+++|.+..+++ .      +-...||..++-.+ |+    +|     ++.++.+.+.+-.+++  -...+.-+
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-~D----~I-----v~~Vl~Fiee~i~~pdwr~reaavmA  387 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-GD----DI-----VPHVLPFIEENIQNPDWRNREAAVMA  387 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-cc----cc-----hhhhHHHHHHhcCCcchhhhhHHHHH
Confidence            478999999987743221 1      22333444444433 32    33     3455666654433333  33445555


Q ss_pred             HHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh
Q 016639          243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH  322 (385)
Q Consensus       243 L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~  322 (385)
                      ...+.-+-+..+-.-+..+++|.++.+|...+.-+...+.|+|..++-.-..      +..|  .....+.+..++.-|.
T Consensus       388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e------~~~n--~~~l~~~l~~l~~gL~  459 (859)
T KOG1241|consen  388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE------AIIN--QELLQSKLSALLEGLN  459 (859)
T ss_pred             HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh------hccc--HhhhhHHHHHHHHHhh
Confidence            5556667777777666789999999999966656667799999988621100      0001  1112345666666665


Q ss_pred             cCCCHHHHHHHHHHHHHhh
Q 016639          323 AGLSSPSLISASIALKAVA  341 (385)
Q Consensus       323 ~~~~~~v~~~a~~aL~~La  341 (385)
                      .  .+.+..++||++..|+
T Consensus       460 D--ePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  460 D--EPRVASNVCWAFISLA  476 (859)
T ss_pred             h--CchHHHHHHHHHHHHH
Confidence            5  5778899999999997

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=89.99  E-value=22  Score=37.68  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=109.7

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC-CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC-GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~-~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~  220 (385)
                      +......++..|..++.   ++.....+....++..|..+...... ....++..++++++.+....-..=+.+...++.
T Consensus        96 ~~~~~~~a~k~l~sls~---d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~  172 (713)
T KOG2999|consen   96 NNISKMEALKELDSLSL---DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSNDFVV  172 (713)
T ss_pred             CcHHHHHHHHHHhhccc---cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecccHHHH
Confidence            45566669999999877   57767777778889999999987532 135788888999988764321111223344444


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc--CCCccchhh
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL--TPDDDQVVA  298 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt--~~Dd~rv~~  298 (385)
                      ....+......+..+...|+..+-++..+...-++.|.+.--+..|+..|+..+..++..|.+.|-+|.  .+||-|-+.
T Consensus       173 ~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~  252 (713)
T KOG2999|consen  173 SMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEM  252 (713)
T ss_pred             HHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHH
Confidence            555555444456677888899999988888888899999999999999999887777777777777764  455555443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=89.84  E-value=23  Score=35.36  Aligned_cols=196  Identities=10%  Similarity=0.082  Sum_probs=125.8

Q ss_pred             HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-----hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639          170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA  244 (385)
Q Consensus       170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~  244 (385)
                      .+.|.++.|+..|...   +-+..-.+....+++.......     .+.+.....+.+..+++. .+++++.-.+-..|+
T Consensus        73 ~~~dll~~Li~~L~~L---~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g-y~~~dial~~g~mlR  148 (335)
T PF08569_consen   73 YRSDLLYLLIRNLPKL---DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG-YENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHTHHHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG-GGSTTTHHHHHHHHH
T ss_pred             HHhCHHHHHHHHhhhC---CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH-hcCccccchHHHHHH
Confidence            3457888888888774   6666666677777777553221     223455556666666665 456677666555555


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHh
Q 016639          245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLH  322 (385)
Q Consensus       245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~  322 (385)
                      . |.++|..-..+.....+..+.+.++.++.++...|..+++.|-+...  .. .     +..+-.  ..-...+..+|.
T Consensus       149 e-c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk--~~-~-----a~fl~~n~d~ff~~~~~Ll~  219 (335)
T PF08569_consen  149 E-CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK--KL-V-----AEFLSNNYDRFFQKYNKLLE  219 (335)
T ss_dssp             H-HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH--HH-H-----HHHHHHTHHHHHHHHHHHCT
T ss_pred             H-HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH--HH-H-----HHHHHHHHHHHHHHHHHHcc
Confidence            5 77999887888888999999999999999999999999999754211  10 0     111221  123456777776


Q ss_pred             cCCCHHHHHHHHHHHHHhhcChHHH----HHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          323 AGLSSPSLISASIALKAVAVNDEIC----KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       323 ~~~~~~v~~~a~~aL~~La~~~e~c----~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      +. |=-++..++..|+.+-.+..+-    +-|.+..-+..++.+|++    ..+.+.=+|+.+.+
T Consensus       220 s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d----~sk~Iq~eAFhvFK  279 (335)
T PF08569_consen  220 SS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD----KSKNIQFEAFHVFK  279 (335)
T ss_dssp             -S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-----S-HHHHHHHHHHHH
T ss_pred             CC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC----cchhhhHHHHHHHH
Confidence            63 6557788899999998765433    334455678888888876    33467777776653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.36  E-value=21  Score=34.21  Aligned_cols=161  Identities=13%  Similarity=0.031  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHH
Q 016639          191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVV-KESYMELKIDELI  266 (385)
Q Consensus       191 ~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~n-r~~iv~~G~i~~L  266 (385)
                      .-+++|+.-|-.++...+.+..|+++.-.-.+.-+|....   ...-+.-.++.+|.++....+.- ..-++..+++|..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            4467777777777777777899999999888888886543   34446667888888876544432 3334578999999


Q ss_pred             HHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHH
Q 016639          267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI  346 (385)
Q Consensus       267 v~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~  346 (385)
                      +..|..|+..-..-|...+-.+-.||+----+=.++|.--.+.  -.+.-++.-|.+..+..+++.+.+...+|+-++..
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~--~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra  251 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA--LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA  251 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence            9999999975555566666666666652211111222222222  23455555555544677888888888888888877


Q ss_pred             HHHHHHc
Q 016639          347 CKSVAEN  353 (385)
Q Consensus       347 c~~I~e~  353 (385)
                      |...-.+
T Consensus       252 r~aL~~c  258 (293)
T KOG3036|consen  252 RAALRSC  258 (293)
T ss_pred             HHHHHhh
Confidence            7766543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.06  E-value=13  Score=36.63  Aligned_cols=107  Identities=11%  Similarity=0.157  Sum_probs=74.4

Q ss_pred             HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh--hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (385)
Q Consensus       177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (385)
                      -||+++.+.   ++.+...|...|.+++.+ .. +.+.  +..-++.+.++++....    ...|+.++.|++. ++..+
T Consensus         7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHh-hHHHH
Confidence            467777764   677888888888887765 21 2222  23456777777765321    5567778888765 45566


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCcc
Q 016639          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD  294 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~  294 (385)
                      ..+++. .+..++..+-.......+..|.+|.||+.+|+.
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~  115 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE  115 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH
Confidence            777765 777777777776557888899999999988874

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=88.88  E-value=0.96  Score=38.22  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      .+..|+++|.. ++++.+++-||.=|...+.-++.-|..+-+.|+=+.+..+|.+.+.+|..+|.-++..|.
T Consensus        44 llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            46677777743 236778888999999998888888877778899999999999988899999998887663

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=88.59  E-value=26  Score=34.41  Aligned_cols=204  Identities=17%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             hhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH----HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 016639           62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL----SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDK  137 (385)
Q Consensus        62 ~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf----e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~  137 (385)
                      -.-+|+.|.+-+++.|+.+.=.-....+.+.+.+    ..+ + +...+          .+...+.++.+...+-..   
T Consensus        34 e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~-~~d~v----------~~~~~tL~~~~~k~lkkg---   98 (309)
T PF05004_consen   34 EESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSR-Y-LPDFV----------EDRRETLLDALLKSLKKG---   98 (309)
T ss_pred             cccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c-cHHHH----------HHHHHHHHHHHHHHhccC---
Confidence            3466777777788888877543344444444332    221 1 11111          011224455555555332   


Q ss_pred             CCcccHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhc--CCccchhHh
Q 016639          138 FSDEDLNEMMGLFDKLIELCGGNE-GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH--DVQSTETFR  214 (385)
Q Consensus       138 ~~~~~~~~~~~al~~L~~lc~~~~-~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~--~~~~~~~i~  214 (385)
                          ..++..-++..+..+|-.-. +.+...++-  ...|+|...+.... ....+...|+.+|+.++.  +.+. .++.
T Consensus        99 ----~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~-~~~~  170 (309)
T PF05004_consen   99 ----KSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDE-EETE  170 (309)
T ss_pred             ----CHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCCh-hHHH
Confidence                33667777777777765400 122222222  46788888887642 234455666777776542  2111 1111


Q ss_pred             h-CCCcHHHHH--HHhcC--------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 016639          215 T-GGGPKLLVN--ILIDG--------NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD  283 (385)
Q Consensus       215 ~-~ggi~~Lv~--lL~~~--------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~  283 (385)
                      + ...++.++.  .++..        .+++.++..|+..-.-+.+.-+..+-.-.-...++.|+.+|.+.+.+|+..|.-
T Consensus       171 ~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGE  250 (309)
T PF05004_consen  171 ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGE  250 (309)
T ss_pred             HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            0 011221111  11111        123456555544434344444442222112346899999999888788888766


Q ss_pred             HHHHh
Q 016639          284 AIRVL  288 (385)
Q Consensus       284 aL~~L  288 (385)
                      +|.-|
T Consensus       251 aiAll  255 (309)
T PF05004_consen  251 AIALL  255 (309)
T ss_pred             HHHHH
Confidence            66655

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=88.26  E-value=5.7  Score=36.53  Aligned_cols=133  Identities=10%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      .......++..+..++..   ..+...-.-...+|.|+..+..   ...-+...|..+|..++.....        ....
T Consensus        66 Rs~v~~~A~~~l~~l~~~---l~~~~~~~~~~~l~~Ll~~~~~---~~~~i~~~a~~~L~~i~~~~~~--------~~~~  131 (228)
T PF12348_consen   66 RSKVSKTACQLLSDLARQ---LGSHFEPYADILLPPLLKKLGD---SKKFIREAANNALDAIIESCSY--------SPKI  131 (228)
T ss_dssp             ---HHHHHHHHHHHHHHH---HGGGGHHHHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H----------HH
T ss_pred             HHHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHCCc--------HHHH
Confidence            344666777777777663   2222221222357777777765   3566788888888888764320        1122


Q ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639          222 LVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYME----LKIDELILEILSRQRNDSIQSLYDAIRVL  288 (385)
Q Consensus       222 Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~----~G~i~~Lv~lL~~~~~~v~k~A~~aL~~L  288 (385)
                      +...+..  ...++.+...++.++..+..........+-.    ...++.+...|...+.+|.+.|-.++..+
T Consensus       132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL  204 (228)
T ss_dssp             HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            2333322  2357888888999998887666522222222    23667778888888878888777667666

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=87.75  E-value=1.9  Score=38.41  Aligned_cols=111  Identities=17%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh---------HHHHHHHHHHHHh
Q 016639          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN---------DSIQSLYDAIRVL  288 (385)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~---------~v~k~A~~aL~~L  288 (385)
                      .++..++.|+......+++..--..|+   +.+-.-.+.|++.||+..|+.+|.....         ..+.++..+|+.|
T Consensus        67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lr---t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTSKILKSLRVSLR---TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT--HHHHHHHHHHHHH---HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCccHHHHHHHHHHhc---cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            345556666554333233333333333   2334567889999999999999965221         5677789999999


Q ss_pred             cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      .....-+         ...+...+++..|+..|.+. +..+...++..|..++
T Consensus       144 ~n~~~G~---------~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGL---------EAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHH---------HHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HccHHHH---------HHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            7543211         12233578999999999774 6677778888887765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.59  E-value=25  Score=38.48  Aligned_cols=264  Identities=16%  Similarity=0.085  Sum_probs=150.1

Q ss_pred             HhhHHhcCCChhHHHHHHHHH--HHHcCCC-CCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 016639           74 KENMEDLGMEPTEALQDAIQT--LSLQGVD-LSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLF  150 (385)
Q Consensus        74 ~eni~~f~m~~~eAl~~aI~q--fe~QGvd-Lsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al  150 (385)
                      ..|+..+...+.|..++.++-  |..|-|. ++-..         -..++......+.......       ..+.+.+..
T Consensus       418 l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n---------~~~v~~~r~rk~~~~~~~~-------~~~svakt~  481 (748)
T KOG4151|consen  418 LYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLN---------WGNVHMSRARKRLSLDEDP-------SCESVAKTV  481 (748)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccc---------cchHHHHHHHHhhccCcch-------hhhHHHHHH
Confidence            345555555565666665543  6666662 33221         1123433344444333221       333333333


Q ss_pred             H--HHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh---CCCcHHHHHH
Q 016639          151 D--KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNI  225 (385)
Q Consensus       151 ~--~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~---~ggi~~Lv~l  225 (385)
                      .  ..+++..+  ...-|...++-|++..|+.++...   .+.....+-++|+.-       -+|-.   ...++++..+
T Consensus       482 ~~~~~E~~aA~--~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~-------i~f~~~~~~~v~~~~~s~  549 (748)
T KOG4151|consen  482 SWAKNEYLAAK--EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGK-------IDFPGERSYEVVKPLDSA  549 (748)
T ss_pred             HHHHHHHHhhh--hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhh-------cCCCCCchhhhhhhhcch
Confidence            3  33333322  344466677889999999998764   344444555666521       12221   2233444444


Q ss_pred             HhcCCCCHHH--HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchh
Q 016639          226 LIDGNEDPEI--LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYG  303 (385)
Q Consensus       226 L~~~~~~~~v--~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~  303 (385)
                      +..   +.+.  .=..+-++.|++..++.-|+.|.+.-+++.+-+.+-..+...++.+...+.||.+...         -
T Consensus       550 ~~~---d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~---------~  617 (748)
T KOG4151|consen  550 LHN---DEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL---------L  617 (748)
T ss_pred             hhh---hHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH---------H
Confidence            432   2222  2256777888889999999999998888887777666666788889999999975332         3


Q ss_pred             HHHHHHh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHH-HH-HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHH
Q 016639          304 YARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CK-SVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (385)
Q Consensus       304 ~a~~I~e-~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~-c~-~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~  380 (385)
                      +.+-|++ ..+++-....+.. .+...-...+.++..+++..++ |. ...-..+.+.++.++.+    ++.++.+..+.
T Consensus       618 ~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~----~~~~~qhrgl~  692 (748)
T KOG4151|consen  618 YERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD----EDDEIQHRGLV  692 (748)
T ss_pred             HHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC----chhhhhhhhhh
Confidence            4556776 4567666666555 2333333455566656665544 44 44455788888888765    22356666554


Q ss_pred             HH
Q 016639          381 LL  382 (385)
Q Consensus       381 ~L  382 (385)
                      .+
T Consensus       693 ~~  694 (748)
T KOG4151|consen  693 II  694 (748)
T ss_pred             hh
Confidence            44

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.01  E-value=4.8  Score=44.08  Aligned_cols=165  Identities=17%  Similarity=0.170  Sum_probs=103.7

Q ss_pred             HHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH--HHHHHHccCCh
Q 016639          199 TMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDE--LILEILSRQRN  275 (385)
Q Consensus       199 aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~--~Lv~lL~~~~~  275 (385)
                      +|++++...+. +..+++.+|+..+...++.. +..+++...+..+.+++..-+ ++...+..--+.  .+-..+...+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~  571 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDS  571 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcch
Confidence            66676665544 58899999999999999987 788899999999999876443 333222211111  22223444343


Q ss_pred             -HHHHHHHHHHHHhcCCCccchhhhhc-------hhHHHHH-------HhcCcHHH-HHHHHhcCCCHHHHHHHHHHHHH
Q 016639          276 -DSIQSLYDAIRVLLTPDDDQVVASQV-------YGYARRF-------AKIGIARA-LVHSLHAGLSSPSLISASIALKA  339 (385)
Q Consensus       276 -~v~k~A~~aL~~Lt~~Dd~rv~~g~a-------~~~a~~I-------~e~Ggi~~-Lv~lL~~~~~~~v~~~a~~aL~~  339 (385)
                       +.-=.|+..|+.+..+.+....-+.-       .++...+       .-.....+ +..+++....++.+-.+.+++.+
T Consensus       572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~  651 (699)
T KOG3665|consen  572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN  651 (699)
T ss_pred             hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence             44445888888887664432211110       0111111       11122344 66666665555667788899999


Q ss_pred             hhcC-hHHHHHHHHcCcHHHHHHHHHh
Q 016639          340 VAVN-DEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       340 La~~-~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                      +... .++|..+.+.||+..+.+....
T Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (699)
T KOG3665|consen  652 VLEQNKEYCKLVRESNGFELIENIRVL  678 (699)
T ss_pred             HHHcChhhhhhhHhccchhhhhhcchh
Confidence            8865 5899999999999999776443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=86.67  E-value=11  Score=33.77  Aligned_cols=92  Identities=9%  Similarity=-0.014  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcC
Q 016639          233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG  312 (385)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~G  312 (385)
                      +.+...++.++..+|..++..-     ...++.+...|+..+..|.+.|.-+|..|...|-+|+. |            .
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~------------~   63 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-G------------Q   63 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-h------------h
Confidence            5677788888998888876433     24578999999999889999999999999988876653 1            1


Q ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          313 IARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       313 gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                      .+..++.+|.. .++.+...+...+..+...
T Consensus        64 l~~~~l~~l~D-~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   64 LFSRILKLLVD-ENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hhHHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence            12444455533 2555555555555555443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=86.47  E-value=5.2  Score=30.82  Aligned_cols=68  Identities=12%  Similarity=0.019  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC
Q 016639          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG  354 (385)
Q Consensus       277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G  354 (385)
                      .+|.|.|++.++...+.          -...+-+.+.++.++++....+.-.++..++.+|.-++...+-+..+.+.|
T Consensus         3 ~lKaaLWaighIgss~~----------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPL----------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHHhHhcChH----------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            46889999999974322          122333678999999999886555678888999999999999988888876

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=86.32  E-value=2.2  Score=37.65  Aligned_cols=84  Identities=13%  Similarity=0.198  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCcc-c-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHH
Q 016639          192 VLDSCLKTMALLVHDVQS-T-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEI  269 (385)
Q Consensus       192 vl~~Al~aLa~L~~~~~~-~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~l  269 (385)
                      -...++.+++.+..+.+. . +-+...|-++.++.++....++..++..++.+|..+|. ++.+|..| ...+++.|.+.
T Consensus        59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I-~~~~~~~L~~~  136 (157)
T PF11701_consen   59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFI-SKNYVSWLKEL  136 (157)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCC-HHHCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHH-HHHHHHHHHHH
Confidence            456678899988887644 2 33345666777888888566788999999999999884 56555544 56789999999


Q ss_pred             HccCChHH
Q 016639          270 LSRQRNDS  277 (385)
Q Consensus       270 L~~~~~~v  277 (385)
                      ++...++.
T Consensus       137 ~~~~~~~~  144 (157)
T PF11701_consen  137 YKNSKDDS  144 (157)
T ss_dssp             TTTCC-HH
T ss_pred             HccccchH
Confidence            97666544

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.35  E-value=13  Score=40.81  Aligned_cols=149  Identities=13%  Similarity=0.085  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHH
Q 016639          120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT  199 (385)
Q Consensus       120 v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~a  199 (385)
                      +...|+.++..+.++       +...+...+..+-.++-.     +.    ....+.+||.+|++.    ..++.-.|+.
T Consensus       285 ~~lLL~stkpLl~S~-------n~sVVmA~aql~y~lAP~-----~~----~~~i~kaLvrLLrs~----~~vqyvvL~n  344 (968)
T KOG1060|consen  285 LKLLLQSTKPLLQSR-------NPSVVMAVAQLFYHLAPK-----NQ----VTKIAKALVRLLRSN----REVQYVVLQN  344 (968)
T ss_pred             HHHHHHhccHHHhcC-------CcHHHHHHHhHHHhhCCH-----HH----HHHHHHHHHHHHhcC----CcchhhhHHH
Confidence            335667777777665       667777777777666432     21    123478999999874    3444444566


Q ss_pred             HHHHhcCCcc--ch------------------------hHhhCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCh
Q 016639          200 MALLVHDVQS--TE------------------------TFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNE  251 (385)
Q Consensus       200 La~L~~~~~~--~~------------------------~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e  251 (385)
                      ++.++...+.  .+                        .++++.-+..+++=|..+  ..+-++...+..+|..++...-
T Consensus       345 Ia~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~  424 (968)
T KOG1060|consen  345 IATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG  424 (968)
T ss_pred             HHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence            6666543321  00                        013445555555555432  1233577777777776543322


Q ss_pred             hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCc
Q 016639          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD  293 (385)
Q Consensus       252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd  293 (385)
                      .     +..-.+..|+.+|++|+..|+-++...|+-|...|.
T Consensus       425 s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  425 S-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             c-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            2     234567789999999988899999999999875443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.99  E-value=4.9  Score=43.61  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      +++.++.=+..   .++.+..-|+++++.+..+.      +-.-...++.+.|++  +++-+...+...+..   -+..+
T Consensus        87 avnt~~kD~~d---~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~d--~~~yvRktaa~~vak---l~~~~  152 (734)
T KOG1061|consen   87 AVNTFLKDCED---PNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLKD--DDPYVRKTAAVCVAK---LFDID  152 (734)
T ss_pred             hhhhhhccCCC---CCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhccC--CChhHHHHHHHHHHH---hhcCC
Confidence            34444444433   46777777777777654431      112234555556654  345555555444443   34567


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD  292 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~D  292 (385)
                      .+.+.++|.++.|..++...+..|+.+|.++|+.+...+
T Consensus       153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            788889999999999999767689999999999997443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=83.13  E-value=17  Score=31.91  Aligned_cols=136  Identities=15%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccc
Q 016639          216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ  295 (385)
Q Consensus       216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~r  295 (385)
                      .+.++.++..|.......++...+.-++....   +..++.+.+ -.-+-+-..+..+..+-...++.++..|       
T Consensus         2 ~~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l-------   70 (157)
T PF11701_consen    2 SDELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL-------   70 (157)
T ss_dssp             CCCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH-------
Confidence            34566677766642345566666666666552   455554432 2333444445444334555677777776       


Q ss_pred             hhhhhchhHHHHHH-hcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639          296 VVASQVYGYARRFA-KIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       296 v~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                        |-..++-+..|. ..|.++.++.++.... +..+...++.+|..=| .++.|....-..|++.|.+..+.
T Consensus        71 --fp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~~~~~~L~~~~~~  139 (157)
T PF11701_consen   71 --FPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISKNYVSWLKELYKN  139 (157)
T ss_dssp             --CTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHHHCHHHHHHHTTT
T ss_pred             --hCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHcc
Confidence              233345555666 6788888888888333 5666666666665544 45566555555888888887755

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=82.80  E-value=55  Score=32.77  Aligned_cols=160  Identities=9%  Similarity=0.034  Sum_probs=98.3

Q ss_pred             HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH-Hhc
Q 016639          150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI-LID  228 (385)
Q Consensus       150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l-L~~  228 (385)
                      +-++-+-|+. ..-......+.+|.+|.++...-.   .|.++...|..++..+..-++....+.+..-.+.+--. |..
T Consensus       106 igcilEdcDt-naVseillvvNaeilklildcIgg---eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa  181 (524)
T KOG4413|consen  106 IGCILEDCDT-NAVSEILLVVNAEILKLILDCIGG---EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA  181 (524)
T ss_pred             hhHHHhcCch-hhHHHHHHHhhhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh
Confidence            3344444543 122333445688999999988765   47788888999999887654434455555444433211 111


Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHH
Q 016639          229 GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (385)
Q Consensus       229 ~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~  307 (385)
                       ..+.-+....+..|-.+.+.....-...-+.|.++.|..=|+...+ -|+-++......|+..           +|.+.
T Consensus       182 -kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgre  249 (524)
T KOG4413|consen  182 -KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGRE  249 (524)
T ss_pred             -hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhh
Confidence             1122233355556666666666666666678888888888876444 4555666667777532           34445


Q ss_pred             HH-hcCcHHHHHHHHhcCC
Q 016639          308 FA-KIGIARALVHSLHAGL  325 (385)
Q Consensus       308 I~-e~Ggi~~Lv~lL~~~~  325 (385)
                      ++ +.|.|..++..+....
T Consensus       250 flaQeglIdlicnIIsGad  268 (524)
T KOG4413|consen  250 FLAQEGLIDLICNIISGAD  268 (524)
T ss_pred             hcchhhHHHHHHHHhhCCC
Confidence            55 7899999999886644

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=82.80  E-value=29  Score=38.18  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CcHhHHHHHHHHHHHHhcCCccc--hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639          188 GSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~L~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~  265 (385)
                      ..+.+...|+..++.|+.--..+  ...+..=| -.|.+-|.  .+.++++-.-+.+|..++..+...+..=--.|.+|.
T Consensus       811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPr  887 (1172)
T KOG0213|consen  811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPR  887 (1172)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence            35667777777777764311111  11111111 12233332  357788777777777666544333222223579999


Q ss_pred             HHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (385)
Q Consensus       266 Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~  331 (385)
                      |.-+|++....|+.++...+-.++......+.       +|.+.+  +-=-|+++|+++ ++++..
T Consensus       888 ltPILknrheKVqen~IdLvg~IadrgpE~v~-------aREWMR--IcfeLlelLkah-kK~iRR  943 (1172)
T KOG0213|consen  888 LTPILKNRHEKVQENCIDLVGTIADRGPEYVS-------AREWMR--ICFELLELLKAH-KKEIRR  943 (1172)
T ss_pred             chHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHH-HHHHHH
Confidence            99999998878999988888888754443332       344443  123466677765 443433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.59  E-value=51  Score=36.42  Aligned_cols=34  Identities=21%  Similarity=0.066  Sum_probs=28.2

Q ss_pred             hcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 016639          310 KIGIARALVHSLHAGL-SSPSLISASIALKAVAVN  343 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~  343 (385)
                      +..++..|.+++.++. +..+...++.||..|..+
T Consensus       511 esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr  545 (866)
T KOG1062|consen  511 ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR  545 (866)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            4567889999999887 667888999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=81.24  E-value=5  Score=44.49  Aligned_cols=176  Identities=13%  Similarity=0.110  Sum_probs=106.0

Q ss_pred             HHHHcCcHHHHHHHHhcccC-----CcHhHHHHHHHHHHHHhcCCccchhHh--------hCCCcHHHHHHHh-cCC-CC
Q 016639          168 VATKNGGVELVCSICYKMRC-----GSKRVLDSCLKTMALLVHDVQSTETFR--------TGGGPKLLVNILI-DGN-ED  232 (385)
Q Consensus       168 ~~~~~Gaip~Lv~lL~~~~~-----~d~~vl~~Al~aLa~L~~~~~~~~~i~--------~~ggi~~Lv~lL~-~~~-~~  232 (385)
                      .+.+.|++..+++++.....     .-.+++..|+.+|.-++.-.+.+..++        ...||..+++.-. .+. -+
T Consensus       596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            45677899999999875431     113567788888876554433333332        1247877766542 222 38


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhC-C---ChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHH
Q 016639          233 PEILNSGFAVVAASATGNEVVKESYMEL-K---IDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR  307 (385)
Q Consensus       233 ~~v~~~a~~~L~~~~~~~e~nr~~iv~~-G---~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~  307 (385)
                      ++++..|+.+|.++....+++|..++.. |   +-+..  .|..++. ..+.+..                    ++...
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l--------------------~~mw~  733 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVL--------------------RQMWE  733 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHH--------------------HHHHH
Confidence            9999999999999777776777655421 1   00000  1111111 1122221                    11222


Q ss_pred             HH-hcCcHHHHHHHHhcCC---C-HHHHHHHHHHHHHhhcChHHHHHHHHcCcHH--HHHHHHHh
Q 016639          308 FA-KIGIARALVHSLHAGL---S-SPSLISASIALKAVAVNDEICKSVAENGGID--ALLRCIDD  365 (385)
Q Consensus       308 I~-e~Ggi~~Lv~lL~~~~---~-~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~--~Lv~ll~~  365 (385)
                      -| ..+||+.|+.+|....   + ..+..-+|.+|.-||..++.++.+..+--+.  .+..+|+.
T Consensus       734 ~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~e  798 (1516)
T KOG1832|consen  734 AVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAE  798 (1516)
T ss_pred             HHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhC
Confidence            34 4689999999998742   1 2577889999999999999999887654332  24444543

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=80.15  E-value=31  Score=36.61  Aligned_cols=151  Identities=17%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChh
Q 016639          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE--DPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~--~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      ...+.+++.+.  +....+ .|+..|+.+..+...-.+|+...|+..|.++..++..  ..++++.+++++..+.. |--
T Consensus        85 a~~i~e~l~~~--~~~~~~-~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme-hgv  160 (713)
T KOG2999|consen   85 AKRIMEILTEG--NNISKM-EALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME-HGV  160 (713)
T ss_pred             HHHHHHHHhCC--CcHHHH-HHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh-hce
Confidence            34567777764  233333 3999999998876555788999999999999998765  67777777777765421 110


Q ss_pred             h-HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          253 V-KESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       253 n-r~~iv~~G~i~~Lv~lL~~--~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      . -..+ .-.++.........  -...+...|...|-+++.+++-.-         ..+++.--+..|+..|+.. +..+
T Consensus       161 vsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~---------~~v~eev~i~~li~hlq~~-n~~i  229 (713)
T KOG2999|consen  161 VSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR---------QLVAEEVPIETLIRHLQVS-NQRI  229 (713)
T ss_pred             eeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH---------HHHHhcCcHHHHHHHHHhc-chHH
Confidence            0 0000 01122222222211  111566678888888877666221         1244556677777777664 4444


Q ss_pred             HHHHHHHHHHh
Q 016639          330 LISASIALKAV  340 (385)
Q Consensus       330 ~~~a~~aL~~L  340 (385)
                      ...+...+..|
T Consensus       230 ~~~aial~nal  240 (713)
T KOG2999|consen  230 QTCAIALLNAL  240 (713)
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 54/441 (12%), Positives = 119/441 (26%), Gaps = 185/441 (41%)

Query: 1   MRTVPKSYYKHF-SNSEQIDFQ----------KQSSLITL------------PQPRAHPF 37
           + +  +   + F     +I+++          +Q S++T              Q  A   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 38  VPKDHPFF-VRTDL---------TAHEM-GPPKTVRTISQEAFDEVVKENMED------L 80
           V +  P+  +R  L             + G  KT   +        V+  M+       L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNL 189

Query: 81  GMEPT-EALQDAIQTLSLQ-------GVD---------------LSGIVKCVPGESSLK- 116
               + E + + +Q L  Q         D               L  ++K  P E+ L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 117 -DNPLIQSLERLKQLDLNSK------DK-------------FSDEDLN------EMMGLF 150
             N  +Q+ +     +L+ K       K              S +  +      E+  L 
Sbjct: 250 LLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 151 DKLI---------ELCGGNEGSVNAAVATKNGGVELVCSIC-------------YKMRCG 188
            K +         E+   N                   SI              +K    
Sbjct: 308 LKYLDCRPQDLPREVLTTNP---------------RRLSIIAESIRDGLATWDNWKHVNC 352

Query: 189 SK--RVLDSCLKT------------MALLVHDVQSTETFRTGGGPKLLVNIL---IDGNE 231
            K   +++S L              +++                  LL  ++   +  ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--------ILLS-LIWFDVIKSD 403

Query: 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD-AIRVLLT 290
              ++N             ++ K S            ++ +Q  +S  S+    + + + 
Sbjct: 404 VMVVVN-------------KLHKYS------------LVEKQPKESTISIPSIYLELKVK 438

Query: 291 PDDDQVVASQV---YGYARRF 308
            +++  +   +   Y   + F
Sbjct: 439 LENEYALHRSIVDHYNIPKTF 459

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 161 EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220
           + +   A+      V  +                    T+  L H  +        GG  
Sbjct: 44  KEASRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101

Query: 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280
            LV +L  G+    +L      +       E  K +       + ++ +L++     +  
Sbjct: 102 ALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159

Query: 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340
             D +++L   + +  +              G  +ALV+ +        L + S  LK +
Sbjct: 160 TTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

Query: 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383
           +V      ++ E GG+ AL   + D     ++ + + C   L 
Sbjct: 211 SVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLR 249

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 18/223 (8%)

Query: 156 LCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT 215
           L   +    N     + GG++ +      +   S+R++ +CL T+  L     +T+    
Sbjct: 210 LSVCSS---NKPAIVEAGGMQALGLH---LTDPSQRLVQNCLWTLRNLSDA--ATKQEGM 261

Query: 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275
            G    LV +L     D  ++     +++     N   K    ++   E ++  +  +  
Sbjct: 262 EGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV-LRAG 318

Query: 276 DSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333
           D       AI  L  LT    +   +Q                +V  LH     P + + 
Sbjct: 319 DREDITEPAICALRHLTSRHQEAEMAQNA-----VRLHYGLPVVVKLLHPPSHWPLIKAT 373

Query: 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376
              ++ +A+       + E G I  L++ +  +     +  + 
Sbjct: 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 156 LCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT 215
           L   +    N     + GG++ +      +   S+R++ +CL T+  L     +T+    
Sbjct: 213 LSVCSS---NKPAIVEAGGMQALGLH---LTDPSQRLVQNCLWTLRNLSDA--ATKQEGM 264

Query: 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275
            G    LV +L     D  ++     +++     N   K    ++   E ++  +  +  
Sbjct: 265 EGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV-LRAG 321

Query: 276 DSIQSLYDAIRVL--LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333
           D       AI  L  LT    +   +Q                +V  LH     P + + 
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNA-----VRLHYGLPVVVKLLHPPSHWPLIKAT 376

Query: 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383
              ++ +A+       + E G I  L++ +  +     +  +        
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           + +L          A+      V  +                    T+  L H  +    
Sbjct: 41  VHQLSKKEA--SRHAIMRSPQMVSAIVRTM--QNTNDVETARCTAGTLHNLSHHREGLLA 96

Query: 213 FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272
               GG   LV +L  G+    +L      +       E  K +       + ++ +L++
Sbjct: 97  IFKSGGIPALVKML--GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154

Query: 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332
                +    D +++L   + +                 G  +ALV+ +        L +
Sbjct: 155 TNVKFLAITTDCLQILAYGNQE---------SKLIILASGGPQALVNIMRTYTYEKLLWT 205

Query: 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383
            S  LK ++V      ++ E GG+ AL   + D     ++ + + C   L 
Sbjct: 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLR 252

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 19/231 (8%)

Query: 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET 212
           + +L          A+      V  +                    T+  L H  +    
Sbjct: 174 VHQLSKKEA--SRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 213 FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272
               GG   LVN+L  G+    +L      +       E  K +       + ++ +L++
Sbjct: 230 IFKSGGIPALVNML--GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287

Query: 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332
                +    D +++L   + +  +              G  +ALV+ +        L +
Sbjct: 288 TNVKFLAITTDCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWT 338

Query: 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383
            S  LK ++V      ++ E GG+ AL   + D     ++ + + C   L 
Sbjct: 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----PSQRLVQNCLWTLR 385

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.94
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.93
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.92
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.91
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.89
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.89
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.89
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.88
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.86
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.84
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.83
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.82
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.82
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.82
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.8
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.76
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.69
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.64
3grl_A	651	General vesicular transport factor P115; vesicle t	99.22
3grl_A	651	General vesicular transport factor P115; vesicle t	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.83
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.58
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.51
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.46
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.46
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.31
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.93
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.84
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.47
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.36
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.32
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.27
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.24
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.18
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.93
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.91
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.81
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.61
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.54
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.41
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.3
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.29
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.09
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.88
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.82
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	95.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.68
1qgr_A	876	Protein (importin beta subunit); transport recepto	95.53
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.25
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.13
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.32
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	94.0
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.99
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.95
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.45
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.22
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	92.87
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.6
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.5
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.24
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.14
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.13
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.5
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	91.27
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	90.1
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.06
2x1g_F	971	Cadmus; transport protein, developmental protein,	87.19
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	86.38
2x19_B	963	Importin-13; nuclear transport, protein transport;	85.15
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	83.61
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	82.45
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	82.26
2x19_B	963	Importin-13; nuclear transport, protein transport;	80.04

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.7e-33  Score=287.73  Aligned_cols=340  Identities=16%  Similarity=0.171  Sum_probs=272.9

Q ss_pred             cccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHhh
Q 016639           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKEN   76 (385)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~en   76 (385)
                      .-+|++++.|++++++    ||++++||     ..|.||.+|+||++.|++..|++++    +++..-++.+ .++|+.+
T Consensus        65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~-~~vv~~G  143 (510)
T 3ul1_B           65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGG  143 (510)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCC
Confidence            3589999999999998    99999999     8899999999999999999998877    4555555555 6777776


Q ss_pred             -----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCC---------------------------------------
Q 016639           77 -----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGE---------------------------------------  112 (385)
Q Consensus        77 -----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~---------------------------------------  112 (385)
                           +..+.-+..+..+.|+.       -|+||..+.+..                                       
T Consensus       144 aIp~Lv~lL~s~~~~v~e~A~~-------aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          144 AIPAFISLLASPHAHISEQAVW-------ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHH-------HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHH-------HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence                 55566555555565552       222222211100                                       


Q ss_pred             ---CCCCC---chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639          113 ---SSLKD---NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR  186 (385)
Q Consensus       113 ---~~~~~---~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~  186 (385)
                         .....   ..+..++..|...+...       +.+.+..++|.|.+++..  +.++...+.+.|++|.|+.+|.+  
T Consensus       217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~--  285 (510)
T 3ul1_B          217 LCRNKNPAPPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGA--  285 (510)
T ss_dssp             HHCCCSSCCCHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTC--
T ss_pred             HhhcccchhHHHHHHhHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcC--
Confidence               00000   11124555666665543       778899999999999986  77777888999999999999987  


Q ss_pred             CCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639          187 CGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL  265 (385)
Q Consensus       187 ~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~  265 (385)
                       .+..++.+|+++|++++.+++. +..+++.|+++.|+.+|++  ++.+++..++|+|++++.+++.+++.+++.|++++
T Consensus       286 -~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~  362 (510)
T 3ul1_B          286 -TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF  362 (510)
T ss_dssp             -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             -CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHH
Confidence             4889999999999999988765 5788999999999999985  57899999999999999999999999999999999


Q ss_pred             HHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---
Q 016639          266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV---  342 (385)
Q Consensus       266 Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~---  342 (385)
                      |+.+|++++.+++++|+|+|+||+.        ++..++..++++.|+|++|+++|+.. |+.++..++.+|.++..   
T Consensus       363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~--------~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~~~  433 (510)
T 3ul1_B          363 LVGVLSKADFKTQKEAAWAITNYTS--------GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAE  433 (510)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHc--------cCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999985        34457788899999999999999885 78888888999888752   


Q ss_pred             ----ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          343 ----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       343 ----~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                          .+.++..|+++||++.|.++ +.   |+|.+|++.|..+|.+
T Consensus       434 ~~~~~~~~~~~iee~ggl~~ie~L-q~---~~n~~i~~~A~~iie~  475 (510)
T 3ul1_B          434 KLGETEKLSIMIEECGGLDKIEAL-QR---HENESVYKASLNLIEK  475 (510)
T ss_dssp             TTTCHHHHHHHHHHTTHHHHHHHG-GG---CSSHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHcCcHHHHHHH-Hc---CCCHHHHHHHHHHHHH
Confidence                35789999999999999664 55   5677999999999864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.3e-32  Score=281.50  Aligned_cols=347  Identities=16%  Similarity=0.182  Sum_probs=273.2

Q ss_pred             cccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHhh
Q 016639           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKEN   76 (385)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~en   76 (385)
                      .-+|++++.|+++++.    ||++++||     ..|+||.+|.||.+.+++..|++++    +++...+..+ ..+|..+
T Consensus        84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~-~~vv~~G  162 (529)
T 3tpo_A           84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGG  162 (529)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCC
Confidence            4579999999999998    79999999     7899999999999999999998877    4555555555 6677666


Q ss_pred             -----HHhcCCChhHHHHHHHHHH--------------HHcCC-C-CCCCccCCCCC-------------------CCCC
Q 016639           77 -----MEDLGMEPTEALQDAIQTL--------------SLQGV-D-LSGIVKCVPGE-------------------SSLK  116 (385)
Q Consensus        77 -----i~~f~m~~~eAl~~aI~qf--------------e~QGv-d-Lsni~~~~~~~-------------------~~~~  116 (385)
                           +..+.-...+..+.|+.-+              -..|+ + |-.+.......                   ....
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~  242 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  242 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence                 4555555555555555221              11121 0 10111100000                   0000


Q ss_pred             C---chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHH
Q 016639          117 D---NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVL  193 (385)
Q Consensus       117 ~---~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl  193 (385)
                      .   ..+..++..|...+...       +.+.+..++|+|.+++..  +.++...+.+.|++|.|+.+|.+   .+..++
T Consensus       243 ~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~  310 (529)
T 3tpo_A          243 APPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGA---TELPIV  310 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTC---SCHHHH
T ss_pred             hhhHHHHhhHHHHHHHHhcCC-------cHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcC---CChhHH
Confidence            0   11124556666666544       778899999999999997  77778888999999999999987   488999


Q ss_pred             HHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc
Q 016639          194 DSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR  272 (385)
Q Consensus       194 ~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~  272 (385)
                      .+|+++|++|+.+++. +..+++.|+++.|+.+|++  ++.+++..++|+|++++.+++.+++.+++.|++++|+.+|.+
T Consensus       311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence            9999999999988765 5788999999999999985  578999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-------cChH
Q 016639          273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-------VNDE  345 (385)
Q Consensus       273 ~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-------~~~e  345 (385)
                      ++.+++++|+|+|+||+.        ++..++..++++.|+|++|+++|+.. |+.++..++.+|.++.       ..+.
T Consensus       389 ~~~~v~~~A~~aL~nl~~--------~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~~~~~~~~~~  459 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTS--------GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAEKLGETEK  459 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHH--------HSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHhccChHH
Confidence            999999999999999984        44567888999999999999999885 7888888888888875       2357


Q ss_pred             HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ++..|+++||++.|..+ +.   |+|.+|++.|..+|.+
T Consensus       460 ~~~~iee~ggl~~ie~L-q~---~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          460 LSIMIEECGGLDKIEAL-QR---HENESVYKASLNLIEK  494 (529)
T ss_dssp             HHHHHHHTTCHHHHTGG-GG---CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHH-Hc---CCCHHHHHHHHHHHHH
Confidence            88999999999999665 44   5677999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=9.9e-29  Score=252.04  Aligned_cols=224  Identities=15%  Similarity=0.094  Sum_probs=190.6

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcC-C-ccchhHhhCCC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-V-QSTETFRTGGG  218 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~-~-~~~~~i~~~gg  218 (385)
                      +.+.+..++|.|..+|..  ++.++..+.. .|+||+||.+|++   ++.+++..|+++|.+|+.+ + +.+..|++.||
T Consensus       213 ~~~l~~~Aa~aL~nLa~~--~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga  287 (458)
T 3nmz_A          213 SITLRRYAGMALTNLTFG--DVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS  287 (458)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHhCC--CcccHHHHHHcCCcHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence            456789999999999997  7778877765 4669999999997   5889999999999999875 2 33588899999


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCCh----HHHHHHHHHHHHhcC---
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN----DSIQSLYDAIRVLLT---  290 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~---  290 (385)
                      ++.|+++|... .+.+++..++++|++++..+++||..|+ ..|++++|+.+|.+++.    +++++|+|+|+||+.   
T Consensus       288 I~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a  366 (458)
T 3nmz_A          288 VKALMECALEV-KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA  366 (458)
T ss_dssp             HHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence            99999987643 4688999999999999986888999998 79999999999998754    489999999999984   


Q ss_pred             CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCc
Q 016639          291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQ  369 (385)
Q Consensus       291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~  369 (385)
                      .++         ++...+.+.|+|++|+.+|+++ +..++++++++|++|+. ++++++.|.+.|+++.|+++|++    
T Consensus       367 ~~~---------~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s----  432 (458)
T 3nmz_A          367 TNE---------DHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS----  432 (458)
T ss_dssp             TCH---------HHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC----
T ss_pred             CCH---------HHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC----
Confidence            222         3444678999999999999886 67799999999999995 57899999999999999999975    


Q ss_pred             CcHHHHHHHHHHHhcC
Q 016639          370 GNKTVARICCSLLSKV  385 (385)
Q Consensus       370 ~~~~v~k~a~~~Lr~l  385 (385)
                      .+..+.+.|+.+|+||
T Consensus       433 ~~~~v~~~Aa~AL~nL  448 (458)
T 3nmz_A          433 KHKMIAMGSAAALRNL  448 (458)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            2347899999999885

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.94  E-value=6.4e-26  Score=224.32  Aligned_cols=223  Identities=15%  Similarity=0.092  Sum_probs=190.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcC-C-ccchhHhhCCC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-V-QSTETFRTGGG  218 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~-~-~~~~~i~~~gg  218 (385)
                      +.+.+..++|.|+.+|..  ++.+|..+... |+||.||.+|++   ++..++..|+++|.+|+.+ + +.+..+++.||
T Consensus        97 ~~~~q~~Aa~aL~nLa~~--~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~  171 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFG--DVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS  171 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSS--CHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCcHHHHHHHHCC---CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC
Confidence            466788999999999997  77788887654 559999999997   5889999999999999875 2 33688899999


Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCCh----HHHHHHHHHHHHhcC---
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN----DSIQSLYDAIRVLLT---  290 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~---  290 (385)
                      ++.|+++|... .+.+++..++++|++++..+++||..|+ ..|++++|+.+|++++.    +++++|+|+|++|+.   
T Consensus       172 Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a  250 (354)
T 3nmw_A          172 VKALMECALEV-KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA  250 (354)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence            99999986543 4678999999999999987888999998 79999999999988754    589999999999984   


Q ss_pred             -CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCC
Q 016639          291 -PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGL  368 (385)
Q Consensus       291 -~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~  368 (385)
                       +++          +...+.+.|++++|+.+|+++ +..++++++++|.+|+. ++++++.|.+.|+++.|++++++   
T Consensus       251 ~~~~----------~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s---  316 (354)
T 3nmw_A          251 TNED----------HRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---  316 (354)
T ss_dssp             TCHH----------HHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC---
T ss_pred             CCHH----------HHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC---
Confidence             333          344577999999999999985 67799999999999995 57899999999999999999976   


Q ss_pred             cCcHHHHHHHHHHHhcC
Q 016639          369 QGNKTVARICCSLLSKV  385 (385)
Q Consensus       369 ~~~~~v~k~a~~~Lr~l  385 (385)
                       .+..+.+.|+.+|++|
T Consensus       317 -~~~~i~~~A~~aL~nL  332 (354)
T 3nmw_A          317 -KHKMIAMGSAAALRNL  332 (354)
T ss_dssp             -SSHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             2347899999999875

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.93  E-value=7.4e-25  Score=216.71  Aligned_cols=225  Identities=15%  Similarity=0.138  Sum_probs=189.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc--------cCCcHhHHHHHHHHHHHHhcCCcc-chh
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQS-TET  212 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~--------~~~d~~vl~~Al~aLa~L~~~~~~-~~~  212 (385)
                      ....+..++|.|..++.   ++++|..+.+.|++++|+.+|...        ...+..++..|.++|.+|+.+++. +..
T Consensus        45 ~~~~~~~A~~aL~nls~---d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             GGGTHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             chHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45677899999999997   589999999999999999999631        012367899999999999987653 455


Q ss_pred             HhhCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHhc
Q 016639          213 FRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEIL-SRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       213 i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~iv~~G~i~~Lv~lL-~~~~~~v~k~A~~aL~~Lt  289 (385)
                      +...+| ||.|+++|++  ++.+++..++|+|++++.+ ++.||..|++.|++++|+.+| ++++.++++.|+++|++|+
T Consensus       122 i~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs  199 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS  199 (354)
T ss_dssp             HHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            656666 9999999985  5789999999999999875 678999999999999999985 5566689999999999999


Q ss_pred             C-CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc----ChHHHHHHHHcCcHHHHH
Q 016639          290 T-PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDALL  360 (385)
Q Consensus       290 ~-~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~---~v~~~a~~aL~~La~----~~e~c~~I~e~GGl~~Lv  360 (385)
                      . .|++|.          .|+ ..|+|++|+++|+...+.   .++++++++|++|+.    ++++++.|.+.|+++.|+
T Consensus       200 ~~~~~nk~----------~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv  269 (354)
T 3nmw_A          200 AHCTENKA----------DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL  269 (354)
T ss_dssp             TTCHHHHH----------HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred             ccChhhhH----------HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHH
Confidence            7 545543          477 789999999999876432   589999999999995    789999999999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          361 RCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       361 ~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++|++    .+..+.+.|+.+|+||
T Consensus       270 ~lL~~----~~~~v~~~A~~aL~nL  290 (354)
T 3nmw_A          270 QHLKS----HSLTIVSNACGTLWNL  290 (354)
T ss_dssp             HHTTC----SCHHHHHHHHHHHHHH
T ss_pred             HHHcC----CChHHHHHHHHHHHHH
Confidence            99986    2347999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.93  E-value=5.2e-25  Score=224.14  Aligned_cols=343  Identities=11%  Similarity=0.053  Sum_probs=250.6

Q ss_pred             cCChhhhhHHhhhhhcc--CCCCC------CCCCCccccccccccCCCcccCCCchhhhhhh---HHHHHHHHHhh----
Q 016639           12 FSNSEQIDFQKQSSLIT--LPQPR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS---QEAFDEVVKEN----   76 (385)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is---qetfd~~v~en----   76 (385)
                      .|++++.|+.+...|..  ..+|+      ..|.||..|.+|.. ++...+..+..+-+.|+   .+.=..+++.+    
T Consensus        12 ~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~   90 (457)
T 1xm9_A           12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE   90 (457)
T ss_dssp             HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence            35678888888887433  24454      67999999999984 56666766654444444   33323444555    


Q ss_pred             -HHhcC-CChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH-HHHHHHHHHhhc--------CC-CCCCcccHH
Q 016639           77 -MEDLG-MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDLN--------SK-DKFSDEDLN  144 (385)
Q Consensus        77 -i~~f~-m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~-~al~~L~~~l~~--------~~-~~~~~~~~~  144 (385)
                       +..+. -...+..++|+       +-|.|+..+ +..+    ..+. .++..|...+..        .. +..+..+.+
T Consensus        91 Lv~lL~~~~~~~~~~~a~-------~aL~nLa~~-~~~~----~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           91 AVSLLRRTGNAEIQKQLT-------GLLWNLSST-DELK----EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHTTCCCHHHHHHHH-------HHHHHHHTS-SSTH----HHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHhhCCCHHHHHHHH-------HHHHHHhcC-HHhH----HHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence             56666 44567778888       677788765 2211    1122 677888887731        10 000113567


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhccc---CCcHhHHHHHHHHHHHHhcC--------------
Q 016639          145 EMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMR---CGSKRVLDSCLKTMALLVHD--------------  206 (385)
Q Consensus       145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~---~~d~~vl~~Al~aLa~L~~~--------------  206 (385)
                      .++.++|.|+++|.   ++++|..+.+. |++|+|+.+|++..   ..+.++..+|+.+|.+|+..              
T Consensus       159 v~~~a~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~  235 (457)
T 1xm9_A          159 VFFNATGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             HHHHHHHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence            78899999999997   48899999998 99999999998521   12445777888888887521              


Q ss_pred             -------------------------------------CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639          207 -------------------------------------VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (385)
Q Consensus       207 -------------------------------------~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (385)
                                                           ....+.+.+.|+++.++.+|++. ++++++..++|+|+++|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~~~~e~a~~aL~nl~~~  314 (457)
T 1xm9_A          236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS-KKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc-CCHHHHHHHHHHHHHhccC
Confidence                                                 01124566788899999999874 5689999999999999987


Q ss_pred             Chhh-----HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639          250 NEVV-----KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG  324 (385)
Q Consensus       250 ~e~n-----r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~  324 (385)
                      +...     +..|.++|++|.|+.+|.+++.+++++|||+|++|+.+.+++           .++..|+|++||++|...
T Consensus       315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-----------~~i~~~~i~~Lv~lL~~~  383 (457)
T 1xm9_A          315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-----------RVMGNQVFPEVTRLLTSH  383 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-----------HHHHHHTHHHHHHTTTSC
T ss_pred             cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-----------HHHHHhhhHHHHHhccCC
Confidence            7542     333447999999999999999999999999999999865543           344568999999999985


Q ss_pred             CC-----HHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          325 LS-----SPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       325 ~~-----~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ..     ..++..++++|.++... +++++.|.++||++.|++++.+.   .+..+++.|+.+|.++
T Consensus       384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~---~~~~i~~~A~~~L~~~  447 (457)
T 1xm9_A          384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSDM  447 (457)
T ss_dssp             CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTT
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC---CcHHHHHHHHHHHHHH
Confidence            32     36788999999999764 58999999999999999998863   2458999999999875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=7.3e-25  Score=224.98  Aligned_cols=336  Identities=15%  Similarity=0.221  Sum_probs=262.0

Q ss_pred             ccCChhhhhHHhhhhh----ccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh--
Q 016639           11 HFSNSEQIDFQKQSSL----ITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN--   76 (385)
Q Consensus        11 ~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en--   76 (385)
                      -.|++++.|+.+.+.|    +..++||     ..|+||..+.||...+++..++.+..+-..|+.   +.-..+++.+  
T Consensus        83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  162 (528)
T 4b8j_A           83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (528)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence            3577889999998884    6677677     679999999999988777777665533333332   3334444444  


Q ss_pred             ---HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 016639           77 ---MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFD  151 (385)
Q Consensus        77 ---i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~  151 (385)
                         +..+.-+..+..+.|+       +-|+||..+.+..+    ..+.  .++..|...+...      .+.+....++|
T Consensus       163 ~~L~~lL~~~~~~v~~~a~-------~aL~~l~~~~~~~~----~~i~~~g~l~~Ll~lL~~~------~~~~v~~~a~~  225 (528)
T 4b8j_A          163 PIFVKLLGSSSDDVREQAV-------WALGNVAGDSPKCR----DLVLANGALLPLLAQLNEH------TKLSMLRNATW  225 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHH-------HHHHHHHHTCHHHH----HHHHHTTCHHHHHHTCCTT------CCHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHH-------HHHHHHhCCChhhH----HHHHHCCcHHHHHHHHhcC------CCHHHHHHHHH
Confidence               4455555555666666       55667765432210    1122  2566677776321      27789999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcHHHHHHHhcCC
Q 016639          152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGN  230 (385)
Q Consensus       152 ~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~  230 (385)
                      .|..+|..  .+. .......|++|.|+.+|.+   .+..++..|+++|++|+.+.+.+ +.+++.|+++.|+.+|.+  
T Consensus       226 ~L~~L~~~--~~~-~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--  297 (528)
T 4b8j_A          226 TLSNFCRG--KPQ-PSFEQTRPALPALARLIHS---NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--  297 (528)
T ss_dssp             HHHHHHCS--SSC-CCHHHHTTHHHHHHHHTTC---CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--
T ss_pred             HHHHHHcC--CCC-CcHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--
Confidence            99999996  444 3344568999999999987   58899999999999999876553 678899999999999986  


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639          231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (385)
Q Consensus       231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~  309 (385)
                      ++..++..++++|++++.+++.+++.+++.|+++.|+.+|.+. +..++++|||+|.+|+..++         ++...++
T Consensus       298 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~---------~~~~~~~  368 (528)
T 4b8j_A          298 PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK---------DQIQAVI  368 (528)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---------HHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---------HHHHHHH
Confidence            4689999999999999999999999999999999999999988 77899999999999986433         4455678


Q ss_pred             hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.|++++|+.+|... +..++..++++|.+++..  ++.+..+++.|+++.|+.+|.+    .+..+...++.+|.+|
T Consensus       369 ~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~d~~v~~~al~~L~~l  441 (528)
T 4b8j_A          369 NAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----PDIRIVTVCLEGLENI  441 (528)
T ss_dssp             HTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence            899999999999986 778999999999999875  6899999999999999999976    3347888998888764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.92  E-value=1.1e-23  Score=193.44  Aligned_cols=235  Identities=18%  Similarity=0.275  Sum_probs=207.0

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      .++.|...+.+.       +.+....+++.|..++..  +++++..+.+.|+++.|+.+|++   ++..++..|+++|++
T Consensus         3 ~i~~L~~~L~~~-------~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~   70 (252)
T 4hxt_A            3 DVEKLVKLLTST-------DSETQKEAARDLAEIASG--PASAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALAN   70 (252)
T ss_dssp             HHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CcHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence            366777777654       688899999999999997  77899999999999999999998   478999999999999


Q ss_pred             HhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          203 LVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       203 L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      |+.+.+ .+..+.+.|+++.++.+|++  ++.+++..++++|.+++..+++++..+++.|+++.|+.+|++.+..++..+
T Consensus        71 l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a  148 (252)
T 4hxt_A           71 IASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA  148 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            998743 36788899999999999985  578999999999999998899999999999999999999999888999999


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHH
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALL  360 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv  360 (385)
                      +++|++|+..++         ++...+.+.|+++.|+.+|+.. ++.++..++++|.+++.. ++.++.+.+.|+++.|+
T Consensus       149 ~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~  218 (252)
T 4hxt_A          149 ARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ  218 (252)
T ss_dssp             HHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHcCCH---------HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            999999997554         2344678899999999999864 788999999999999984 57889999999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          361 RCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       361 ~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +++++    .+..+.+.++.+|++|
T Consensus       219 ~ll~~----~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          219 KLLTS----TDSEVQKEAQRALENI  239 (252)
T ss_dssp             HGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HHHCC----CcHHHHHHHHHHHHHH
Confidence            99975    2348999999999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.92  E-value=7.6e-25  Score=223.36  Aligned_cols=223  Identities=15%  Similarity=0.147  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc--------cCCcHhHHHHHHHHHHHHhcCCcc-chhHh
Q 016639          144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQS-TETFR  214 (385)
Q Consensus       144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~--------~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~  214 (385)
                      ..++.|+|.|..++.   ++++|..+.+.|++++|+.+|...        ...+..++..|.|+|.+|+.+++. +..+.
T Consensus       163 ~~~~qAv~aL~nls~---~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~  239 (458)
T 3nmz_A          163 HQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  239 (458)
T ss_dssp             TTTHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHH
Confidence            456799999999965   699999999999999999999531        002367899999999999988764 34555


Q ss_pred             hCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHhcC-
Q 016639          215 TGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLT-  290 (385)
Q Consensus       215 ~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~iv~~G~i~~Lv~lL~-~~~~~v~k~A~~aL~~Lt~-  290 (385)
                      ..+| ||.|+++|++  ++.+++..++|+|++++.+ ++.||+.|++.|++++|+.+|. +++..+++.|+++|+||+. 
T Consensus       240 ~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~  317 (458)
T 3nmz_A          240 SMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  317 (458)
T ss_dssp             HCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence            5555 9999999985  5789999999999999875 6789999999999999999864 4566899999999999997 


Q ss_pred             CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc----ChHHHHHHHHcCcHHHHHHH
Q 016639          291 PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDALLRC  362 (385)
Q Consensus       291 ~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~---~v~~~a~~aL~~La~----~~e~c~~I~e~GGl~~Lv~l  362 (385)
                      .|++|.          .|+ ..|+|++|+++|+...+.   .++.+++++|++|+.    ++++++.|.+.|+++.|+++
T Consensus       318 ~~~nk~----------~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L  387 (458)
T 3nmz_A          318 CTENKA----------DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH  387 (458)
T ss_dssp             CHHHHH----------HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHH----------HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence            556554          477 789999999999886433   589999999999995    77999999999999999999


Q ss_pred             HHhcCCcCcHHHHHHHHHHHhcC
Q 016639          363 IDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       363 l~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |+++    +..+.+.|+.+|+||
T Consensus       388 L~~~----~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          388 LKSH----SLTIVSNACGTLWNL  406 (458)
T ss_dssp             SSCS----CHHHHHHHHHHHHHH
T ss_pred             HcCC----ChHHHHHHHHHHHHH
Confidence            9862    347999999999875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=2.3e-23  Score=192.80  Aligned_cols=234  Identities=16%  Similarity=0.220  Sum_probs=199.8

Q ss_pred             HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L  203 (385)
                      .+.+...+.+.       +.+.+..+++.|+.+...  +++++..+.+.|++|.|+.+|++   .++.++..|+++|+++
T Consensus        14 ~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l   81 (252)
T 4db8_A           14 LPQMTQQLNSD-------DMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNI   81 (252)
T ss_dssp             HHHHHHHHHSS-------CSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence            44455555554       678999999999765554  67888899999999999999998   4789999999999999


Q ss_pred             hcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 016639          204 VHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (385)
Q Consensus       204 ~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~  282 (385)
                      +.+++. +..+++.|+++.|+++|++  ++.+++..++++|.+++..++..+..+++.|+++.|+.+|++.+..+++.|+
T Consensus        82 ~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  159 (252)
T 4db8_A           82 ASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL  159 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence            986544 6888999999999999997  5789999999999999876654448899999999999999998889999999


Q ss_pred             HHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHH
Q 016639          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLR  361 (385)
Q Consensus       283 ~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~  361 (385)
                      |+|.+|+..++         ++...+++.|+++.|+++|+.. ++.++..++++|.+|+.. ++.+..+.+.|+++.|++
T Consensus       160 ~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  229 (252)
T 4db8_A          160 WALSNIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ  229 (252)
T ss_dssp             HHHHHHTTSCH---------HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHcCCh---------HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence            99999997554         3344677899999999999875 788999999999999964 578899999999999999


Q ss_pred             HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          362 CIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       362 ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++++  .+.  .+.+.|+.+|.+|
T Consensus       230 ll~~--~~~--~v~~~A~~~L~~l  249 (252)
T 4db8_A          230 LQSH--ENE--KIQKEAQEALEKL  249 (252)
T ss_dssp             TTTC--SSS--HHHHTHHHHHHTT
T ss_pred             HhCC--CCH--HHHHHHHHHHHHH
Confidence            9976  234  8999999999986

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.91  E-value=3.5e-24  Score=230.86  Aligned_cols=343  Identities=11%  Similarity=0.104  Sum_probs=240.1

Q ss_pred             ccCChhhhhHHhhhhhcc-CCCCC--------CCCCCccccccccccCCCcccCCCchhhh-hhhHHHHHHHHHhh----
Q 016639           11 HFSNSEQIDFQKQSSLIT-LPQPR--------AHPFVPKDHPFFVRTDLTAHEMGPPKTVR-TISQEAFDEVVKEN----   76 (385)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~isqetfd~~v~en----   76 (385)
                      ..+++.+.-+.+.+.|+. .|-||        ..|+||.+++.+...| ...|..+.++-. --+-+.+...|.++    
T Consensus       256 ~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~-~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~  334 (810)
T 3now_A          256 LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD-ELQQRVACECLIAASSKKDKAKALCEQGVDI  334 (810)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred             hccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence            345677777777777776 45555        6699999999887653 333322111000 01112223333332    


Q ss_pred             HHhcCCChhHHHHHHHHHHHHcCCCCCCCccC---CCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHH
Q 016639           77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC---VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKL  153 (385)
Q Consensus        77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~---~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L  153 (385)
                      +..+=-+.+..+    +.|.+  +.|.++..+   .+.........+...++.|+..+.+.     ..+.+....++|.|
T Consensus       335 L~~Ll~s~~~~v----r~~Al--~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~-----~~d~~v~~~AveaL  403 (810)
T 3now_A          335 LKRLYHSKNDGI----RVRAL--VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP-----GKDKDIRRWAADGL  403 (810)
T ss_dssp             HHHHTTCSCHHH----HHHHH--HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCS-----SCCSSHHHHHHHHH
T ss_pred             HHHHHcCCCHHH----HHHHH--HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHH
Confidence            222211222222    22222  123333211   11111111233456677888887652     11567999999999


Q ss_pred             HHHhcCCCChhhHHHHH-HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-----------------------
Q 016639          154 IELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-----------------------  209 (385)
Q Consensus       154 ~~lc~~~~~~~~r~~~~-~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-----------------------  209 (385)
                      .+++..   ++.|..++ +.|++|.||++|++   ++..++..|+++|+||+.+.+.                       
T Consensus       404 ayLS~~---~~vk~~lv~d~g~Ip~LV~LL~s---~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~  477 (810)
T 3now_A          404 AYLTLD---AECKEKLIEDKASIHALMDLARG---GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE  477 (810)
T ss_dssp             HHHTTS---HHHHHHHHHCHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred             HHHhCC---cHHHHHHHHccchHHHHHHHhCC---CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence            999985   56566555 67999999999997   4788999999999999987631                       


Q ss_pred             -------c---hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639          210 -------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (385)
Q Consensus       210 -------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k  279 (385)
                             +   +.++++|++|.|+++|++  ++++++..++|+|.+++ +++++|..|+++|++++|+.+|++++...++
T Consensus       478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~  554 (810)
T 3now_A          478 LDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKR  554 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence                   1   577899999999999986  57899999999999998 6888999999999999999999999888999


Q ss_pred             HHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHH
Q 016639          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDA  358 (385)
Q Consensus       280 ~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~  358 (385)
                      +|+|+|.+|+...+....|++      . ...|++++|+++|....+...+.+++++|.+|+.. +++++.|++.||++.
T Consensus       555 ~Aa~AL~nL~~~~~p~~~~~~------~-~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~  627 (810)
T 3now_A          555 HATQALARIGITINPEVSFSG------Q-RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK  627 (810)
T ss_dssp             HHHHHHHHHHHHSCHHHHTTT------H-HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhcCCChhhhhcc------h-hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence            999999999865554433322      0 11369999999997532433456899999999987 589999999999999


Q ss_pred             HHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          359 LLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       359 Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |+++|.+  .+.  .+.+.|+.+|.||
T Consensus       628 Lv~LL~s--~~~--~Vq~~A~~~L~NL  650 (810)
T 3now_A          628 IEYYLME--DHL--YLTRAAAQCLCNL  650 (810)
T ss_dssp             HHHHHHS--CCT--THHHHHHHHHHHH
T ss_pred             HHHHHcC--CCH--HHHHHHHHHHHHH
Confidence            9999986  234  7999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.91  E-value=5.4e-23  Score=209.23  Aligned_cols=233  Identities=15%  Similarity=0.163  Sum_probs=185.4

Q ss_pred             HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L  203 (385)
                      ++.|...+.+.       +.+.+..+++.|+.+|..  ++.++..+.+.|++|.||.+|++   +++.++..|+++|.+|
T Consensus         4 l~~lv~~L~s~-------~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nL   71 (457)
T 1xm9_A            4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence            55677777654       678999999999999986  78888889999999999999997   5889999999999999


Q ss_pred             hcC-CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc--------cC-
Q 016639          204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ-  273 (385)
Q Consensus       204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~--------~~-  273 (385)
                      +.+ ++.+..+++.||+|.|+++|+. +.+.+++..++|+|++++.. +++|..|++ |++|+|+.+|.        +. 
T Consensus        72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~  148 (457)
T 1xm9_A           72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence            987 4446888999999999999984 24789999999999999975 789999999 99999999993        22 


Q ss_pred             -------ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc-CcHHHHHHHHh-----------------------
Q 016639          274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLH-----------------------  322 (385)
Q Consensus       274 -------~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~-Ggi~~Lv~lL~-----------------------  322 (385)
                             ...++++|+|+|+||+.++++|          ..+++. |++++|+.+|+                       
T Consensus       149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          149 NMSREVVDPEVFFNATGCLRNLSSADAGR----------QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHHH----------HHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             chhcccccHHHHHHHHHHHHHHccCHHHH----------HHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence                   2367779999999999764443          334454 55555555554                       


Q ss_pred             ---------------------------------------------------------------------------cCCCH
Q 016639          323 ---------------------------------------------------------------------------AGLSS  327 (385)
Q Consensus       323 ---------------------------------------------------------------------------~~~~~  327 (385)
                                                                                                 ...++
T Consensus       219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  298 (457)
T 1xm9_A          219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD  298 (457)
T ss_dssp             TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred             ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence                                                                                       33345


Q ss_pred             HHHHHHHHHHHHhhcCh-H----HHHH-HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          328 PSLISASIALKAVAVND-E----ICKS-VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       328 ~v~~~a~~aL~~La~~~-e----~c~~-I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .+++.++++|.+|+..+ +    +.+. |.+.||++.|+++|.+    ++.++.+.++.+|++|
T Consensus       299 ~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~----~~~~v~~~A~~aL~nl  358 (457)
T 1xm9_A          299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS----GNSDVVRSGASLLSNM  358 (457)
T ss_dssp             HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC----CCHhHHHHHHHHHHHH
Confidence            56677899999998753 2    3233 4478999999999976    2348999999999975

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=1.9e-23  Score=214.93  Aligned_cols=335  Identities=14%  Similarity=0.160  Sum_probs=255.1

Q ss_pred             cCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh---
Q 016639           12 FSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN---   76 (385)
Q Consensus        12 ~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en---   76 (385)
                      .|++.+.++.+.+.    ++.+++|+     ..|+||..+.||...++...++.+..+-..|+.   +.-+.++..+   
T Consensus        97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~  176 (530)
T 1wa5_B           97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP  176 (530)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence            46678888888888    35555666     579999999999987777777665533333332   2224444433   


Q ss_pred             --HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHH
Q 016639           77 --MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDK  152 (385)
Q Consensus        77 --i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~  152 (385)
                        +.-+.-+..+..+.|+       +-|+||..+.+...    ..+.  .++..|...+...       +.+....++|.
T Consensus       177 ~Lv~lL~~~~~~vr~~A~-------~aL~~l~~~~~~~~----~~~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~  238 (530)
T 1wa5_B          177 LFIQLLYTGSVEVKEQAI-------WALGNVAGDSTDYR----DYVLQCNAMEPILGLFNSN-------KPSLIRTATWT  238 (530)
T ss_dssp             HHHHHHHHCCHHHHHHHH-------HHHHHHHTTCHHHH----HHHHHTTCHHHHHHGGGSC-------CHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHH-------HHHHHHhCCCccch----HHHHHcCcHHHHHHHhccC-------CHHHHHHHHHH
Confidence              2233323445556666       44556654432110    0111  3566677776543       67889999999


Q ss_pred             HHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCC
Q 016639          153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNE  231 (385)
Q Consensus       153 L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~  231 (385)
                      |..+|..  ...........|++|.|+.+|.+   .+..++..|+++|++|+.+.+. .+.+++.|+++.|+.+|.+  .
T Consensus       239 L~~L~~~--~~~~~~~~~~~~~l~~L~~lL~~---~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~  311 (530)
T 1wa5_B          239 LSNLCRG--KKPQPDWSVVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--E  311 (530)
T ss_dssp             HHHHHCC--SSSCCCHHHHGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--S
T ss_pred             HHHHhCC--CCCCCcHHHHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--C
Confidence            9999986  32334455668999999999987   4789999999999999987544 4678889999999999985  5


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI  311 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~  311 (385)
                      +..++..++++|.+++.+++...+.+++.|+++.|+.+|.+.+..++++|||+|.+|+..+.         ++...+++.
T Consensus       312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---------~~~~~~~~~  382 (530)
T 1wa5_B          312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---------EQIQAVIDA  382 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHT
T ss_pred             ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHC
Confidence            78999999999999999999999999999999999999999888999999999999986432         445567889


Q ss_pred             CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--h--HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          312 GIARALVHSLHAGLSSPSLISASIALKAVAVN--D--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       312 Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~--e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |++++|+.+|... +..++..++++|.+++..  +  +.+..+.+.|+++.|+.++.+    .+..+...++.+|.+|
T Consensus       383 ~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~al~aL~~l  455 (530)
T 1wa5_B          383 NLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----ADNRIIEVTLDALENI  455 (530)
T ss_dssp             TCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence            9999999999874 778999999999999864  4  788999999999999999875    2447889999888764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=3.4e-22  Score=193.02  Aligned_cols=226  Identities=15%  Similarity=0.131  Sum_probs=185.0

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH-HHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS-ICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~-lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi  219 (385)
                      +.+....++..|..++.   +.+|...+.+.|++|+|+. +|++   +++.++..|+|+|++++.+++. ++.+++.||+
T Consensus        53 ~~e~k~~Al~~L~~lv~---~~dna~~~~~~G~l~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l  126 (296)
T 1xqr_A           53 DQQEREGALELLADLCE---NMDNAADFCQLSGMHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL  126 (296)
T ss_dssp             HHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHh---ChhhHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence            55788899999999998   4778888899999999999 9987   4889999999999999987664 5788999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhh
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g  299 (385)
                      +.|+++|++. .+..+...++|+|++++.+++.+++.|+++|++++|+.+|++++..++++|||+|++|+.+++      
T Consensus       127 ~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~------  199 (296)
T 1xqr_A          127 RKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP------  199 (296)
T ss_dssp             HHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------
T ss_pred             HHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh------
Confidence            9999999863 368899999999999999999999999999999999999999888999999999999985433      


Q ss_pred             hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC--cH-HHHHHHHHhcCCcC-cHHHH
Q 016639          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GI-DALLRCIDDSGLQG-NKTVA  375 (385)
Q Consensus       300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G--Gl-~~Lv~ll~~~~~~~-~~~v~  375 (385)
                         ++...+++.|++++|+.+|+.. +..++..++.+|.+|+...+........+  .+ ..|.+.+..-..++ +.+++
T Consensus       200 ---~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~  275 (296)
T 1xqr_A          200 ---EHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL  275 (296)
T ss_dssp             ---GGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             ---HHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHH
Confidence               4566789999999999999885 66799999999999988743332222222  12 22323333322233 57999


Q ss_pred             HHHHHHHhc
Q 016639          376 RICCSLLSK  384 (385)
Q Consensus       376 k~a~~~Lr~  384 (385)
                      +.|..+|.+
T Consensus       276 ~~~~~il~~  284 (296)
T 1xqr_A          276 EFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=3.7e-22  Score=179.89  Aligned_cols=195  Identities=17%  Similarity=0.219  Sum_probs=172.6

Q ss_pred             cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (385)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (385)
                      .|.+|.|+.+|++   .+..++..|+++|++++.+++. +..+++.|+++.|+++|++  ++.+++..++++|.+++.++
T Consensus        11 ~~~~~~l~~LL~s---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A           11 GSELPQMVQQLNS---PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             --CHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC
T ss_pred             cchhHHHHHHhcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCC
Confidence            5789999999987   5889999999999999966544 5788999999999999986  47899999999999999999


Q ss_pred             hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHH
Q 016639          251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL  330 (385)
Q Consensus       251 e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~  330 (385)
                      +.+++.+++.|+++.|+.+|++++..+++.|||+|++|+.+++         ++...+.+.|++++|+++|+.. +..++
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~  155 (210)
T 4db6_A           86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQIL  155 (210)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCcHHHHHHHHcCC-CHHHH
Confidence            9999999999999999999999988999999999999997554         3445678999999999999885 78899


Q ss_pred             HHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          331 ISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       331 ~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ..++++|.+++.. ++.+..+.+.|+++.|++++.+    .+..+.+.|+.+|++|
T Consensus       156 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH----ENEKIQKEAQEALEKL  207 (210)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence            9999999999988 6889999999999999999975    3448999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.89  E-value=3e-22  Score=199.55  Aligned_cols=344  Identities=15%  Similarity=0.164  Sum_probs=250.2

Q ss_pred             cCChhhhhHHhhhhh----ccCCCCC-----CC-CCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh--
Q 016639           12 FSNSEQIDFQKQSSL----ITLPQPR-----AH-PFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN--   76 (385)
Q Consensus        12 ~~~~~~~~~~~~~~~----~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en--   76 (385)
                      .|++++.+..+...|    +...+|+     .. |++|..+.+|+..++...+..+..+-..|+.   +.-..+++.+  
T Consensus        30 ~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  109 (450)
T 2jdq_A           30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV  109 (450)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence            466777788887774    3356776     44 9999999999887676666554433333321   2223334333  


Q ss_pred             ---HHhcCCChhHHHHHHHHHHHH--------------cC-CC---------------------CCCCccCC-CCCCCCC
Q 016639           77 ---MEDLGMEPTEALQDAIQTLSL--------------QG-VD---------------------LSGIVKCV-PGESSLK  116 (385)
Q Consensus        77 ---i~~f~m~~~eAl~~aI~qfe~--------------QG-vd---------------------Lsni~~~~-~~~~~~~  116 (385)
                         +.-+.-+-.+..+.|+.-+..              .| +.                     |+|+.... |....  
T Consensus       110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--  187 (450)
T 2jdq_A          110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--  187 (450)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--
Confidence               333443333333444433210              11 11                     11111111 11100  


Q ss_pred             CchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHH
Q 016639          117 DNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC  196 (385)
Q Consensus       117 ~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~A  196 (385)
                       .-+..++..|...+...       +.+....++|.|..+|..  .++++..+.+.|++|.|+.+|++   .+..++..|
T Consensus       188 -~~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a  254 (450)
T 2jdq_A          188 -AKVSPCLNVLSWLLFVS-------DTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMH---NDYKVVSPA  254 (450)
T ss_dssp             -GGTGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTC---SCHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCC---CchhHHHHH
Confidence             00113444455555432       677888999999999986  67778888899999999999986   588999999


Q ss_pred             HHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639          197 LKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN  275 (385)
Q Consensus       197 l~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~  275 (385)
                      +++|++++.+.+. ++.+++.|+++.|+++|.+  ++..+...++++|.+++.+++.+++.+++.|+++.|+.+|.+.+.
T Consensus       255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~  332 (450)
T 2jdq_A          255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF  332 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence            9999999988654 3667889999999999986  478999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-----------
Q 016639          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-----------  344 (385)
Q Consensus       276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-----------  344 (385)
                      +++++|||+|.+|+..        +..++.+.+++.|++++|+++|... +..++..++++|.+++...           
T Consensus       333 ~v~~~a~~~L~~l~~~--------~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~  403 (450)
T 2jdq_A          333 RTRKEAAWAITNATSG--------GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQEAKRNGTGI  403 (450)
T ss_dssp             HHHHHHHHHHHHHHHH--------CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred             HHHHHHHHHHHHHHcC--------CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhccccch
Confidence            9999999999999852        2335667788899999999999875 7789999999999997542           


Q ss_pred             -HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          345 -EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       345 -e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                       .++..|.+.||++.|..++.+    +|..+.+.+..+|.++
T Consensus       404 ~~~~~~l~~~g~~~~l~~l~~~----~~~~v~~~a~~~l~~~  441 (450)
T 2jdq_A          404 NPYCALIEEAYGLDKIEFLQSH----ENQEIYQKAFDLIEHY  441 (450)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHCH----HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence             468899999999999886643    5568999999998763

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.89  E-value=5.1e-23  Score=215.06  Aligned_cols=345  Identities=15%  Similarity=0.150  Sum_probs=239.7

Q ss_pred             cCChhhhhHHhhhh---hccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhh----HHHHHHHHHhh---
Q 016639           12 FSNSEQIDFQKQSS---LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS----QEAFDEVVKEN---   76 (385)
Q Consensus        12 ~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is----qetfd~~v~en---   76 (385)
                      .|++++.|+.+...   |+....+.     ..|-||.+|.+|.. ++...|..++.+-+.|+    .+.=+++++.+   
T Consensus        58 ~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp  136 (584)
T 3l6x_A           58 GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP  136 (584)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHH
Confidence            46688889988877   44322222     67999999999965 55666666554444444    44435555555   


Q ss_pred             --HHhcCC-ChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH-HHHHHHHHHhh----cCC-------CCCCcc
Q 016639           77 --MEDLGM-EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDL----NSK-------DKFSDE  141 (385)
Q Consensus        77 --i~~f~m-~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~-~al~~L~~~l~----~~~-------~~~~~~  141 (385)
                        +..+.- ...+..+.|..-+    |.||.-    +.    ....+. .++..|...+.    ...       +.....
T Consensus       137 ~LV~LL~s~~~~~~~e~aa~aL----~nLS~~----~~----~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          137 ALVRLLRKARDMDLTEVITGTL----WNLSSH----DS----IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHH----HHHTTS----GG----GHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHH----HHHhCC----ch----hhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence              444443 2345555544221    344431    10    001121 45555655441    000       001112


Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcc---cCCcHhHHHHHHHHHHHHhcCCccc-h-----
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKM---RCGSKRVLDSCLKTMALLVHDVQST-E-----  211 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~---~~~d~~vl~~Al~aLa~L~~~~~~~-~-----  211 (385)
                      +.+.+..+.++|++++..  ++++|..+.+. |+++.||.+|+..   ...+.+.+.+|+++|.||+.+.+.. +     
T Consensus       205 d~~V~~nAa~~L~NLs~~--~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSE--RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSS--CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             cHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            568888999999999986  77878888885 5578999999853   1135578999999999998652100 0     


Q ss_pred             -----------hHhhCCC---------cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----hhhHHHHHhCCChHHHH
Q 016639          212 -----------TFRTGGG---------PKLLVNILIDGNEDPEILNSGFAVVAASATGN----EVVKESYMELKIDELIL  267 (385)
Q Consensus       212 -----------~i~~~gg---------i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~----e~nr~~iv~~G~i~~Lv  267 (385)
                                 .+.+.+|         ++.++.+|+.. .+.+++..|+|+|+++|.++    +.++..|.+.|+++.|+
T Consensus       283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s-~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES-KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             -------------CCCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhcccccccccccCchhHHHHhcccHHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                       1122334         55678899764 57899999999999999876    34555666789999999


Q ss_pred             HHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-------CHHHHHHHHHHHHHh
Q 016639          268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-------SSPSLISASIALKAV  340 (385)
Q Consensus       268 ~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-------~~~v~~~a~~aL~~L  340 (385)
                      .+|.+.+.++++.|||+|+||+.+.++|..          | ..|+|+.||.+|....       +..++..+|++|.+|
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~----------I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL  430 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDARNKEL----------I-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV  430 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCSCHHH----------H-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChhHHHH----------H-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence            999999989999999999999988776642          4 6799999999998752       346788999999999


Q ss_pred             hc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          341 AV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       341 a~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +. ++++.+.|.++|||+.|+.+++++....  .+.+.|+.+|++|
T Consensus       431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~--~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          431 IAENLEAAKKLRETQGIEKLVLINKSGNRSE--KEVRAAALVLQTI  474 (584)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTCSSSCH--HHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHCCChHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence            75 4699999999999999999998753344  8999999998864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.89  E-value=9.1e-22  Score=202.66  Aligned_cols=237  Identities=12%  Similarity=0.107  Sum_probs=200.3

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      .++.|...+.+.       +.+.+..++..+|.+...+.+|. ...+.+.|+||+||++|+..  +++.++..|+|+|+|
T Consensus        58 ~i~~~v~~l~s~-------d~~~q~~a~~~~rklls~e~~pp-i~~ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~n  127 (510)
T 3ul1_B           58 SVEDIVKGINSN-------NLESQLQATQAARKLLSREKQPP-IDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN  127 (510)
T ss_dssp             CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTCSSCCC-HHHHHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCCCch-HHHHHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence            367777777765       89999999999998776523444 66788999999999999864  467899999999999


Q ss_pred             HhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-----H
Q 016639          203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (385)
Q Consensus       203 L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-----~  276 (385)
                      |+.|++. +..+++.|++|.|+++|++  ++.+++..++|+|++++..++.+|..+++.|++++|+.+|.....     .
T Consensus       128 ias~~~e~~~~vv~~GaIp~Lv~lL~s--~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~  205 (510)
T 3ul1_B          128 IASGTSEQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  205 (510)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence            9988655 5889999999999999986  578999999999999998889999999999999999999987643     5


Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCc
Q 016639          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGG  355 (385)
Q Consensus       277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GG  355 (385)
                      ++++++|+|++++.+.+.+..         .....|+++.|+.+|... ++.++..+|++|++|+..+ +..+.+.+.|+
T Consensus       206 ~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~  275 (510)
T 3ul1_B          206 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV  275 (510)
T ss_dssp             HHHHHHHHHHHHHCCCSSCCC---------HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhcccchhH---------HHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence            788999999999987766554         123467899999999874 7789999999999999865 66788999999


Q ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          356 IDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.|+++|.+    .+..+...++.+|.+|
T Consensus       276 i~~Lv~lL~~----~~~~v~~~al~aL~nl  301 (510)
T 3ul1_B          276 VPQLVKLLGA----TELPIVTPALRAIGNI  301 (510)
T ss_dssp             HHHHHHHHTC----SCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcC----CChhhhhHHHHHHHHh
Confidence            9999999975    3347899999998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=5.1e-22  Score=203.78  Aligned_cols=332  Identities=14%  Similarity=0.123  Sum_probs=250.9

Q ss_pred             hhhhHHhhhhhccCCC--CC------CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh-----HHh
Q 016639           16 EQIDFQKQSSLITLPQ--PR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN-----MED   79 (385)
Q Consensus        16 ~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en-----i~~   79 (385)
                      .+.++.+...|...-.  |.      .+|.||..+.+|... +...+..+..+-..|+.   +.-+.++..+     +..
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l  210 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ  210 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH
Confidence            6778777776444222  11      569999999999863 33333222222333432   2223333333     333


Q ss_pred             c-CCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhc
Q 016639           80 L-GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCG  158 (385)
Q Consensus        80 f-~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~  158 (385)
                      + .-...+.++.|+       +-|+|++...|.....   .+..++..|...+...       +.+....+++.|..++.
T Consensus       211 L~~~~~~~v~~~a~-------~~L~~L~~~~~~~~~~---~~~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~  273 (528)
T 4b8j_A          211 LNEHTKLSMLRNAT-------WTLSNFCRGKPQPSFE---QTRPALPALARLIHSN-------DEEVLTDACWALSYLSD  273 (528)
T ss_dssp             CCTTCCHHHHHHHH-------HHHHHHHCSSSCCCHH---HHTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTS
T ss_pred             HhcCCCHHHHHHHH-------HHHHHHHcCCCCCcHH---HHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHc
Confidence            3 223445666666       4455665554332111   1225677788877654       78899999999999998


Q ss_pred             CCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHH
Q 016639          159 GNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILN  237 (385)
Q Consensus       159 ~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~  237 (385)
                      .  .+.....+.+.|++|.|+.+|.+   .+..+...|+++|++|+.+.+. ++.+++.|+++.|+.+|.+. .+..++.
T Consensus       274 ~--~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~  347 (528)
T 4b8j_A          274 G--TNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKK  347 (528)
T ss_dssp             S--CHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHH
T ss_pred             C--CHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHH
Confidence            6  66666788899999999999987   4788999999999999987654 46788999999999999863 2789999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHH
Q 016639          238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL  317 (385)
Q Consensus       238 ~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~L  317 (385)
                      .++|+|.+++.+++.+++.+++.|+++.|+.+|.+++..++++|+|+|.+|+..        +..++..++++.|++++|
T Consensus       348 ~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~--------~~~~~~~~l~~~~~i~~L  419 (528)
T 4b8j_A          348 EACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG--------GSHDQIKYLVSEGCIKPL  419 (528)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999998889999999999999853        234667788899999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCh------------HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          318 VHSLHAGLSSPSLISASIALKAVAVND------------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       318 v~lL~~~~~~~v~~~a~~aL~~La~~~------------e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +.+|... ++.++..++.+|.++....            .++..|.+.||++.|..++.    +.|.++.+.|..+|.+
T Consensus       420 ~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~----~~~~~v~~~a~~il~~  493 (528)
T 4b8j_A          420 CDLLICP-DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS----HDNNEIYEKAVKILEA  493 (528)
T ss_dssp             HHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG----CSSHHHHHHHHHHHHH
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence            9999884 7788999999999997532            47999999999999988643    4566899999998865

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.89  E-value=1.5e-21  Score=201.61  Aligned_cols=239  Identities=10%  Similarity=0.131  Sum_probs=201.7

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .++..|..++...      .+.+.+.+++|+|..++..  ++.++..+++.|++|.|+.+|.+   .+..+...|+|+|+
T Consensus       119 G~ip~Lv~lL~~~------~~~~~q~~Aa~aL~nia~~--~~~~~~~vv~~Gaip~Lv~LL~s---~~~~v~e~A~~aL~  187 (529)
T 3tpo_A          119 GLIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLAS---PHAHISEQAVWALG  187 (529)
T ss_dssp             THHHHHHHHHTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCC------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence            4688889888643      1578889999999999997  88899999999999999999988   48899999999999


Q ss_pred             HHhcCCcc-chhHhhCCCcHHHHHHHhcC---------------------------------------------CCCHHH
Q 016639          202 LLVHDVQS-TETFRTGGGPKLLVNILIDG---------------------------------------------NEDPEI  235 (385)
Q Consensus       202 ~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~---------------------------------------------~~~~~v  235 (385)
                      +|+.+.+. +..+++.|+++.|+.+|...                                             .++.++
T Consensus       188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  267 (529)
T 3tpo_A          188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  267 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence            99876543 56677777777776665321                                             235567


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHH
Q 016639          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR  315 (385)
Q Consensus       236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~  315 (385)
                      +..+||+|++++..++++++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++.         +...+.+.|+++
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---------~~~~i~~~g~l~  338 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---------QTQKVIDAGALA  338 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---------HHHHHHHTTGGG
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH---------HHHHHhhcccHH
Confidence            88899999999998888899999999999999999998889999999999999876653         344678999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          316 ALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       316 ~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +|+.+|++. ++.++..+|++|++++..+ +.+..+.+.|+++.|+.++.+.    +..+.+.|+.+|.||
T Consensus       339 ~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nl  404 (529)
T 3tpo_A          339 VFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAITNY  404 (529)
T ss_dssp             GHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence            999999874 7789999999999998764 7788999999999999999862    347899999998874

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=4e-22  Score=214.82  Aligned_cols=235  Identities=14%  Similarity=0.112  Sum_probs=199.2

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .++..|...+.+.       +.+...+++|.|.+++.   ++++|..+.++|++|+|+.+|++   ++...+..|.|+|+
T Consensus       495 GaVp~LV~LL~s~-------s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL~s---~~~~~k~~Aa~AL~  561 (810)
T 3now_A          495 GITTALCALAKTE-------SHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMALE---GTEKGKRHATQALA  561 (810)
T ss_dssp             THHHHHHHHHTCC-------CHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHcc---CCHHHHHHHHHHHH
Confidence            4788888888654       78899999999999996   68899999999999999999987   47788999999999


Q ss_pred             HHhcCCccchhH---hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHH
Q 016639          202 LLVHDVQSTETF---RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI  278 (385)
Q Consensus       202 ~L~~~~~~~~~i---~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~  278 (385)
                      +|+.+.+....+   ...+++++|+++|... .+...+..++|+|.+++..++++++.|+++|+++.|+.+|.+.+..++
T Consensus       562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq  640 (810)
T 3now_A          562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT  640 (810)
T ss_dssp             HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred             HHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence            998754332222   1246999999999742 234445689999999999989999999999999999999999888899


Q ss_pred             HHHHHHHHHhcCCCccchhhhhchhHHHHHHh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHH-cCc
Q 016639          279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAE-NGG  355 (385)
Q Consensus       279 k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e-~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e-~GG  355 (385)
                      ++|+++|+||+.+++.+.          .+++ .|++++|+.+|... +..++..+|++|++|+. +++.++.|++ .||
T Consensus       641 ~~A~~~L~NLa~~~~~~~----------~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~  709 (810)
T 3now_A          641 RAAAQCLCNLVMSEDVIK----------MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASW  709 (810)
T ss_dssp             HHHHHHHHHHTTSHHHHH----------HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred             HHHHHHHHHHhCChHHHH----------HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            999999999998776543          4565 68999999999884 77899999999999998 6789999999 899


Q ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          356 IDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.|++++++    .+.++.+.++.+|.||
T Consensus       710 I~~Lv~LL~s----~d~~vq~~A~~aL~NL  735 (810)
T 3now_A          710 LDILHTLIAN----PSPAVQHRGIVIILNM  735 (810)
T ss_dssp             HHHHHHHHTC----SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCC----CCHHHHHHHHHHHHHH
Confidence            9999999975    3448999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=186.59  Aligned_cols=196  Identities=12%  Similarity=0.129  Sum_probs=164.7

Q ss_pred             cHHHHHHHHhcccCCcH--hHHHHHHHHHHHHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639          174 GVELVCSICYKMRCGSK--RVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~--~vl~~Al~aLa~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (385)
                      .+|.||++|++.   +.  .++..|.++|.+|+.+++ .+..|++.||||.|+++|++  ++.+++..|+|+|++++.++
T Consensus         9 ~i~~lV~lL~s~---~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            9 TLERAVSMLEAD---HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--QNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CHHHHHHTCCSS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCC---CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCC
Confidence            489999999884   55  788889999999996654 46889999999999999986  57899999999999999989


Q ss_pred             hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh---cC--
Q 016639          251 EVVKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH---AG--  324 (385)
Q Consensus       251 e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~---~~--  324 (385)
                      ++||..|+++|+||+|+.+|++ ++.+++++|+++|++|+..+++|.          .|++ ++|++|++++.   ++  
T Consensus        84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~----------~i~~-~~i~~Lv~ll~~p~sG~~  152 (233)
T 3tt9_A           84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN----------LMIT-EALLTLTENIIIPFSGWP  152 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH----------HHHH-HHHHHHCCCCCHHHHCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH----------HHHh-ccHHHHHHHHhccccCCc
Confidence            9999999999999999999985 567899999999999998887765          3666 47999998763   11  


Q ss_pred             ----------CCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCc-HHHHHHHHHhcCC--cCcHHHHHHHHHHHhcC
Q 016639          325 ----------LSSPSLISASIALKAVAVN-DEICKSVAENGG-IDALLRCIDDSGL--QGNKTVARICCSLLSKV  385 (385)
Q Consensus       325 ----------~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GG-l~~Lv~ll~~~~~--~~~~~v~k~a~~~Lr~l  385 (385)
                                .+..++.++.++|++|+.. +++++.|.+++| |+.|+.+++.+..  ..+...++.|..+||||
T Consensus       153 ~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL  227 (233)
T 3tt9_A          153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL  227 (233)
T ss_dssp             GGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence                      1458999999999999875 599999999865 6999999987521  11236889999999986

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.88  E-value=2.5e-21  Score=202.29  Aligned_cols=262  Identities=10%  Similarity=0.101  Sum_probs=194.4

Q ss_pred             CCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH
Q 016639          101 DLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS  180 (385)
Q Consensus       101 dLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~  180 (385)
                      +|..+-+..|++..-. .   ..+..|...+.+.       +.+.+.++++.|+.+|.+  ++++|..+.+.|+||+||+
T Consensus        31 ~~~~~~~~~~~~~~~~-~---~~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~   97 (584)
T 3l6x_A           31 SLDSLRKGGPPPPNWR-Q---PELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVG   97 (584)
T ss_dssp             ---------CCCCCCC-C---CCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcc-c---ccHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHH
Confidence            5556666555432221 1   2366677777654       778889999999999997  8999999999999999999


Q ss_pred             HHhcccCCcHhHHHHHHHHHHHHhcC--CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 016639          181 ICYKMRCGSKRVLDSCLKTMALLVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM  258 (385)
Q Consensus       181 lL~~~~~~d~~vl~~Al~aLa~L~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv  258 (385)
                      +|++   ++..++..|+++|.+|+.+  .+.+..|+++|||+.|+++|+++ .+.+++..++++|++++. ++++|..|+
T Consensus        98 LL~s---~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~  172 (584)
T 3l6x_A           98 LLDH---PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIV  172 (584)
T ss_dssp             GGGC---SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHH
T ss_pred             HHCC---CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHH
Confidence            9998   5889999999999999985  45578999999999999999974 367899999999999875 889999999


Q ss_pred             hCCChHHHHHHHc-----------------c-CChHHHHHHHHHHHHhcCCCcc-chhhhhc------------------
Q 016639          259 ELKIDELILEILS-----------------R-QRNDSIQSLYDAIRVLLTPDDD-QVVASQV------------------  301 (385)
Q Consensus       259 ~~G~i~~Lv~lL~-----------------~-~~~~v~k~A~~aL~~Lt~~Dd~-rv~~g~a------------------  301 (385)
                      + |++++|+.+|.                 + ....++++|+++|+||+.+++. |......                  
T Consensus       173 ~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~  251 (584)
T 3l6x_A          173 D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK  251 (584)
T ss_dssp             H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc
Confidence            6 67999999872                 1 1248999999999999987643 4322110                  


Q ss_pred             ------hhHHHHH----------------------------------------HhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 016639          302 ------YGYARRF----------------------------------------AKIGIARALVHSLHAGLSSPSLISASI  335 (385)
Q Consensus       302 ------~~~a~~I----------------------------------------~e~Ggi~~Lv~lL~~~~~~~v~~~a~~  335 (385)
                            -+++...                                        .+.+++++|+.+|+...++.+++.+++
T Consensus       252 ~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~  331 (584)
T 3l6x_A          252 DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAG  331 (584)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHH
Confidence                  0111110                                        011335667788876556778899999


Q ss_pred             HHHHhhcCh-----HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          336 ALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       336 aL~~La~~~-----e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +|.+|+..+     .+...|.+.||++.|+++|..    .+..+.+.+|.+|+||
T Consensus       332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s----~~~~v~~~A~~aL~nL  382 (584)
T 3l6x_A          332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN----EHERVVKAASGALRNL  382 (584)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence            999997542     344566678999999999975    2348999999999985

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.88  E-value=2.2e-21  Score=199.54  Aligned_cols=332  Identities=13%  Similarity=0.132  Sum_probs=249.6

Q ss_pred             hhhhhHHhhhhhccCCC--CC------CCCCCccccccccccCCCcccCCCchhhhhhh---HHHHHHHHHhh-----HH
Q 016639           15 SEQIDFQKQSSLITLPQ--PR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS---QEAFDEVVKEN-----ME   78 (385)
Q Consensus        15 ~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is---qetfd~~v~en-----i~   78 (385)
                      +.+.++.+...|...-.  |.      ..|.||..+.+|... +...+..+..+-..|+   .+.-+.++..+     +.
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~  222 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG  222 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH
Confidence            56778777777554332  21      479999999999853 2222222221222222   12222333333     33


Q ss_pred             hcCCChhHHHHHHHHHHHHcCCCCCCCccCC-CCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHh
Q 016639           79 DLGMEPTEALQDAIQTLSLQGVDLSGIVKCV-PGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELC  157 (385)
Q Consensus        79 ~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~-~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc  157 (385)
                      .+.-...+..+.|+       +-|++++... +....   .....++..|...+...       +.+....+++.|..++
T Consensus       223 ll~~~~~~v~~~a~-------~~L~~L~~~~~~~~~~---~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          223 LFNSNKPSLIRTAT-------WTLSNLCRGKKPQPDW---SVVSQALPTLAKLIYSM-------DTETLVDACWAISYLS  285 (530)
T ss_dssp             GGGSCCHHHHHHHH-------HHHHHHHCCSSSCCCH---HHHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHH
T ss_pred             HhccCCHHHHHHHH-------HHHHHHhCCCCCCCcH---HHHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence            33334556667777       4455665443 22111   11125677777777654       6788899999999999


Q ss_pred             cCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHH
Q 016639          158 GGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEIL  236 (385)
Q Consensus       158 ~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~  236 (385)
                      ..  .++.+..+.+.|++|.|+.+|.+   .+..+...|+++|++++.+.+. .+.+++.|+++.|+.+|.+.  +..+.
T Consensus       286 ~~--~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr  358 (530)
T 1wa5_B          286 DG--PQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIK  358 (530)
T ss_dssp             SS--CHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred             CC--CHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHH
Confidence            87  77778888899999999999986   4788999999999999987654 46778899999999999864  78999


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhch--hHHHHHHhcCcH
Q 016639          237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVY--GYARRFAKIGIA  314 (385)
Q Consensus       237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~--~~a~~I~e~Ggi  314 (385)
                      ..++|+|++++.+++.+++.+++.|+++.|+.+|...+..+++.|+|+|.+|+..        +.+  ++.+.+++.|++
T Consensus       359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--------~~~~~~~~~~l~~~~~l  430 (530)
T 1wa5_B          359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG--------GLQRPDIIRYLVSQGCI  430 (530)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--------TTTCTHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHCCCH
Confidence            9999999999998999999999999999999999988889999999999999852        223  667788899999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcC------------hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639          315 RALVHSLHAGLSSPSLISASIALKAVAVN------------DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (385)
Q Consensus       315 ~~Lv~lL~~~~~~~v~~~a~~aL~~La~~------------~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L  382 (385)
                      ++|+.+|... ++.++..++++|.++...            +++|..|.++||++.|..++.    +.|..+++.+..+|
T Consensus       431 ~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~----~~~~~v~~~a~~il  505 (530)
T 1wa5_B          431 KPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ----NENDKIYEKAYKII  505 (530)
T ss_dssp             HHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG----CSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence            9999999874 788999999999999753            347899999999999988653    45568999999998


Q ss_pred             hc
Q 016639          383 SK  384 (385)
Q Consensus       383 r~  384 (385)
                      .+
T Consensus       506 ~~  507 (530)
T 1wa5_B          506 ET  507 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=1.4e-20  Score=169.46  Aligned_cols=193  Identities=14%  Similarity=0.191  Sum_probs=170.6

Q ss_pred             HHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhc
Q 016639          126 RLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH  205 (385)
Q Consensus       126 ~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~  205 (385)
                      .|...+.+.       +.+....+++.|..++..  +++++..+.+.|++|.|+.+|++   +++.++..|+++|++|+.
T Consensus        16 ~l~~LL~s~-------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A           16 QMVQQLNSP-------DQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIAS   83 (210)
T ss_dssp             HHHHHTTCS-------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhc
Confidence            456666554       788999999999999987  89999999999999999999987   488999999999999997


Q ss_pred             CCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 016639          206 DVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDA  284 (385)
Q Consensus       206 ~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~a  284 (385)
                      +++. +..+++.|+++.|+.+|++  ++..++..++|+|++++..++.+++.+++.|+++.|+.+|++.+..+++.|+++
T Consensus        84 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           84 GGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            6544 5788999999999999986  478999999999999999999999999999999999999999888999999999


Q ss_pred             HHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          285 IRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       285 L~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                      |.+|+..++         ++...+.+.|+++.|+.+|... ++.++..++++|.+|+.
T Consensus       162 L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          162 LSNIASGGN---------EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTSCH---------HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCc---------HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            999987533         3445678999999999999874 78899999999999975

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.86  E-value=1e-20  Score=192.53  Aligned_cols=247  Identities=14%  Similarity=0.122  Sum_probs=193.2

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .++..|...+...       +.+....+++.|..+|..  +++++..+.+.|++|.|+.+|.+.. .+..++..|+++|+
T Consensus       266 ~~i~~L~~ll~~~-------~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~L~~ll~~~~-~~~~v~~~a~~~L~  335 (529)
T 1jdh_A          266 GLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALR  335 (529)
T ss_dssp             HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence            5677777777654       788899999999999997  7889999999999999999998641 23789999999999


Q ss_pred             HHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHH
Q 016639          202 LLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS  277 (385)
Q Consensus       202 ~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v  277 (385)
                      +|+.+++.    +..+++.||++.|+++|++. .+..++..++|+|++++.+ +.+++.+++.|+++.|+.+|+..+.++
T Consensus       336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCchHHHHHHHHHHcCChhHHHHHhccc-cchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence            99876433    35788999999999999864 3468999999999999875 567789999999999999999877688


Q ss_pred             HHHHHHHHHHhcCCCccch------------hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH
Q 016639          278 IQSLYDAIRVLLTPDDDQV------------VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE  345 (385)
Q Consensus       278 ~k~A~~aL~~Lt~~Dd~rv------------~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e  345 (385)
                      +++|+|++.|.+..+..+.            ......++...|.+.|++++|+.+|... ++.++..++++|.+|+..++
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~v~~~a~~~l~~l~~~~~  492 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKE  492 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chHHHHHHHHHHHHHhcCHH
Confidence            8888888887322111110            0011234556788999999999999885 77899999999999998889


Q ss_pred             HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++..|.+.||++.|.+++.+    +|.+|.+.|..+|.+|
T Consensus       493 ~~~~i~~~~~~~~L~~l~~~----~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          493 AAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGC----SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHhcC----CCHHHHHHHHHHHHhc
Confidence            99999999999999998753    4568999999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.85  E-value=3.6e-20  Score=195.43  Aligned_cols=313  Identities=14%  Similarity=0.120  Sum_probs=225.2

Q ss_pred             CCCCCccccccccccCCCcccCCCchhhhhhh--HHHHHHHHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCc
Q 016639           34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS--QEAFDEVVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIV  106 (385)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is--qetfd~~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~  106 (385)
                      ..|.||..+.+|+..+..........+-+.++  .+.-+.+++.+     +.-+.-...+.++.++       +-|+|++
T Consensus       180 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~-------~~L~nL~  252 (644)
T 2z6h_A          180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL-------WTLRNLS  252 (644)
T ss_dssp             HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH-------HHHHHHG
T ss_pred             HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH-------HHHHHHh
Confidence            46889999999976642111100000100011  11112333333     2233333445556666       3344554


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639          107 KCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR  186 (385)
Q Consensus       107 ~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~  186 (385)
                      ...+..  ..   +..++..|...+...       +.+....+++.|..+|..  ++.++..+.+.|+++.|+.+|.+..
T Consensus       253 ~~~~~~--~~---~~~~i~~Lv~lL~~~-------d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~~  318 (644)
T 2z6h_A          253 DAATKQ--EG---MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG  318 (644)
T ss_dssp             GGCTTC--CS---CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             hcchhh--hh---hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHccC
Confidence            443321  11   225677788887654       778889999999999997  8899999999999999999998741


Q ss_pred             CCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639          187 CGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI  262 (385)
Q Consensus       187 ~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~  262 (385)
                       ....++..|+++|++|+.+...    +..+++.||++.|+++|++. ++..++..++|+|++++. ++.+++.+++.|+
T Consensus       319 -~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~~~  395 (644)
T 2z6h_A          319 -DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL-CPANHAPLREQGA  395 (644)
T ss_dssp             -TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTH
T ss_pred             -CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHcc-CHHHHHHHHHcCC
Confidence             1268999999999999875332    23488899999999999864 457899999999999986 4667899999999


Q ss_pred             hHHHHHHHccCChH----------------------HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHH
Q 016639          263 DELILEILSRQRND----------------------SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS  320 (385)
Q Consensus       263 i~~Lv~lL~~~~~~----------------------v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~l  320 (385)
                      ++.|+.+|.....+                      ++..++.+|++|+.+.          ++...+.+.|++++|+++
T Consensus       396 i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~----------~~~~~l~~~~~i~~Lv~l  465 (644)
T 2z6h_A          396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV----------HNRIVIRGLNTIPLFVQL  465 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH----------HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHhCCcHHHHHHH
Confidence            99999999875433                      4445566666665432          344567799999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |... ++.++..++++|.+|+..++++..|.+.||++.|++++.+    .|.++.+.|+.+|.+|
T Consensus       466 L~~~-~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~vr~~A~~aL~~l  525 (644)
T 2z6h_A          466 LYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM  525 (644)
T ss_dssp             TTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence            9874 7779999999999999988999999999999999998754    4558988888888764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.84  E-value=8.9e-20  Score=168.57  Aligned_cols=196  Identities=14%  Similarity=0.172  Sum_probs=173.7

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      ++..|...+...       +.+....+++.|..++..  +++++..+.+.|++|.|+.+|++   +++.++..|+++|++
T Consensus        55 ~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~  122 (252)
T 4db8_A           55 ALPALVQLLSSP-------NEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSN  122 (252)
T ss_dssp             HHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence            466677777654       678889999999999997  89999999999999999999998   478999999999999


Q ss_pred             HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      |+.+.+.+ ..+.+.|+++.|+++|++  ++..++..++++|.+++..++.+++.+++.|+++.|+.+|.+.+..++..|
T Consensus       123 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  200 (252)
T 4db8_A          123 IASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA  200 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred             hhcCCchHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
Confidence            99887766 788999999999999986  478999999999999999899999999999999999999999888899999


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                      +++|.+|+..++         ++...+.+.|+++.|+.+|+.. ++.++..++++|.+|+.
T Consensus       201 ~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          201 LWALSNIASGGN---------EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTSCH---------HHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHhcCCH---------HHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHhc
Confidence            999999986443         3455678999999999999875 67799999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=3.9e-20  Score=172.59  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=161.6

Q ss_pred             HHHHHHHhhcCCCCCCcccH--HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDL--NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~--~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      ++.|...+.+.       +.  +.+..+++.|+.+|.+  ++.+|..+.+.|+||+||++|++   +++.++..|+++|.
T Consensus        10 i~~lV~lL~s~-------~~~~~~q~~Aa~~l~~L~~~--~~~~r~~I~~~G~Ip~LV~lL~s---~~~~vq~~Aa~aL~   77 (233)
T 3tt9_A           10 LERAVSMLEAD-------HMLPSRISAAATFIQHECFQ--KSEARKRVNQLRGILKLLQLLKV---QNEDVQRAVCGALR   77 (233)
T ss_dssp             HHHHHHTCCSS-------CCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-------CchHHHHHHHHHHHHHHHcC--CcHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence            66677777654       44  6778999999999987  89999999999999999999988   48899999999999


Q ss_pred             HHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc---cC----
Q 016639          202 LLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS---RQ----  273 (385)
Q Consensus       202 ~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~---~~----  273 (385)
                      +|+.+++ .+..|+++||||.|+++|++. .+.+++..++.+|++++ .++.+|..|++. ++++|+++|.   ++    
T Consensus        78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~  154 (233)
T 3tt9_A           78 NLVFEDNDNKLEVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLS-SNDKLKNLMITE-ALLTLTENIIIPFSGWPEG  154 (233)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGG
T ss_pred             HHHhCCHHHHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHHHHHHhccccCCccc
Confidence            9998644 468999999999999999852 46889999999999986 578899999974 6999998763   11    


Q ss_pred             ---------ChHHHHHHHHHHHHhcCCC-ccchhhhhchhHHHHHHhc-CcHHHHHHHHhcC----C-CHHHHHHHHHHH
Q 016639          274 ---------RNDSIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKI-GIARALVHSLHAG----L-SSPSLISASIAL  337 (385)
Q Consensus       274 ---------~~~v~k~A~~aL~~Lt~~D-d~rv~~g~a~~~a~~I~e~-Ggi~~Lv~lL~~~----~-~~~v~~~a~~aL  337 (385)
                               ..+++.+|.++|+||+..| +.|          +.|.+. |+|++|+.+|+..    . +...++++..+|
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R----------~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L  224 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGR----------KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL  224 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHH----------HHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCCHHHH----------HHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence                     3389999999999999755 443          457765 6789999999873    2 446789999999


Q ss_pred             HHhhcC
Q 016639          338 KAVAVN  343 (385)
Q Consensus       338 ~~La~~  343 (385)
                      .||+.+
T Consensus       225 ~nLs~~  230 (233)
T 3tt9_A          225 HNLSYQ  230 (233)
T ss_dssp             HHHCCC
T ss_pred             HHHHhh
Confidence            999876

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.84  E-value=5.7e-20  Score=198.70  Aligned_cols=313  Identities=13%  Similarity=0.118  Sum_probs=227.7

Q ss_pred             CCCCCccccccccccCCCcccCCCchhhhh--hhHHHHHHHHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCc
Q 016639           34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRT--ISQEAFDEVVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIV  106 (385)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--isqetfd~~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~  106 (385)
                      ..|.||..+.+|+..+....+.....+-+.  .+.+.+..+++++     +..+.-...+.++.+..       -|.|++
T Consensus       316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~-------~L~~L~  388 (780)
T 2z6g_A          316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW-------TLRNLS  388 (780)
T ss_dssp             TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH-------HHHHHH
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH-------HHHHHh
Confidence            457888888888765432211100011111  1233455666655     23333333455566653       333444


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639          107 KCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR  186 (385)
Q Consensus       107 ~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~  186 (385)
                      ...+..  ..   ...++..|...+...       +.+....+++.|..++..  ++.++..+.+.|+++.|+.+|....
T Consensus       389 ~~~~~~--~~---~~~~i~~Lv~lL~~~-------d~~vr~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~  454 (780)
T 2z6g_A          389 DAATKQ--EG---MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG  454 (780)
T ss_dssp             TTCTTC--SC---CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTHHHHHHHHHHHHT
T ss_pred             ccchhh--hh---hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHHccC
Confidence            333221  11   125677777777654       778889999999999997  7889999999999999999998641


Q ss_pred             CCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639          187 CGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI  262 (385)
Q Consensus       187 ~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~  262 (385)
                       ....++..|+++|++|+.+...    +..+.+.++++.|+++|++. +...++..++|+|++++. ++.++..+.+.|+
T Consensus       455 -~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~  531 (780)
T 2z6g_A          455 -DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL-CPANHAPLREQGA  531 (780)
T ss_dssp             -TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTH
T ss_pred             -CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCC
Confidence             1248999999999999875433    24778999999999999864 456899999999999986 5677889999999


Q ss_pred             hHHHHHHHccCChH----------------------HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHH
Q 016639          263 DELILEILSRQRND----------------------SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS  320 (385)
Q Consensus       263 i~~Lv~lL~~~~~~----------------------v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~l  320 (385)
                      ++.|+.+|.+...+                      ++..++.+|++|+.+.          ++...|.+.|+|++|+.+
T Consensus       532 i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~----------~~~~~l~~~~~i~~Lv~l  601 (780)
T 2z6g_A          532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI----------HNRIVIRGLNTIPLFVQL  601 (780)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH----------HHHHHHHHTCCHHHHHHG
T ss_pred             HHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh----------hhHHHHHHCCcHHHHHHH
Confidence            99999999775433                      4445666666666432          344567799999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |... ++.++..++.+|.+|+.+++++..|.+.||++.|++++.+    .|..+.+.|+.+|.+|
T Consensus       602 L~~~-~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~----~~~~Vr~~A~~aL~~l  661 (780)
T 2z6g_A          602 LYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM  661 (780)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence            9885 7889999999999999989999999999999999998764    4558989998888764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.83  E-value=2e-19  Score=164.97  Aligned_cols=194  Identities=17%  Similarity=0.272  Sum_probs=170.5

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (385)
                      |++|.|+.+|++   ++..++..|+++|++++.+.+ .+..+++.|+++.|+++|++  ++.+++..++++|.+++..++
T Consensus         2 ~~i~~L~~~L~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~   76 (252)
T 4hxt_A            2 NDVEKLVKLLTS---TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPD   76 (252)
T ss_dssp             CHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred             CcHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCh
Confidence            689999999998   478899999999999998765 45788999999999999986  468999999999999998889


Q ss_pred             hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (385)
Q Consensus       252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~  331 (385)
                      +++..+++.|+++.|+.+|++.+.+++..|+++|.+|+..++         ++...+.+.|+++.|+.+|+.. ++.++.
T Consensus        77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~~  146 (252)
T 4hxt_A           77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQK  146 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHCCCHHHHHHHHcCC-CHHHHH
Confidence            999999999999999999999888999999999999995333         3445688999999999999874 778999


Q ss_pred             HHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          332 SASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       332 ~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .++++|.+|+..+ +.+..+.+.|+++.|++++.+    .+..+...++.+|.+|
T Consensus       147 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANI  197 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC----CCHHHHHHHHHHHHHH
Confidence            9999999999854 667899999999999999975    3348999999998864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.82  E-value=2.5e-18  Score=171.09  Aligned_cols=237  Identities=11%  Similarity=0.094  Sum_probs=200.5

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .++..|...+.+.       +.+....+++.|..++..  ++.++..+.+.|++|.|+.+++..  .+..+...|+++|+
T Consensus       107 ~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~~~--~~~~v~~~a~~~L~  175 (450)
T 2jdq_A          107 GAVPIFIELLSSE-------FEDVQEQAVWALGNIAGD--STMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALS  175 (450)
T ss_dssp             THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHHTTSC--CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHccC--CHHHHHHHHHCCCHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence            3577777777654       778889999999999996  788999999999999999999852  47889999999999


Q ss_pred             HHhcCC-ccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639          202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       202 ~L~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      +|+.+. +......-.++++.|+++|++  ++.+++..++|+|.+++...++++..+++.|+++.|+.+|.+.+..++..
T Consensus       176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  253 (450)
T 2jdq_A          176 NLCRGKSPPPEFAKVSPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP  253 (450)
T ss_dssp             HHHCCSSSCCCGGGTGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence            999765 322222338899999999985  57899999999999999877888899999999999999999888789999


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL  359 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~L  359 (385)
                      |+++|.+|+..++.         ....+.+.|+++.|+.+|+.. ++.++..++++|.+++. +++.++.+.+.|+++.|
T Consensus       254 a~~~L~~l~~~~~~---------~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  323 (450)
T 2jdq_A          254 ALRAVGNIVTGDDI---------QTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPAL  323 (450)
T ss_dssp             HHHHHHHHTTSCHH---------HHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHhhCChH---------HHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            99999999976553         234567889999999999874 77899999999999996 45788889999999999


Q ss_pred             HHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          360 LRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       360 v~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++++.+.    +..+.+.+|.+|.+|
T Consensus       324 ~~~l~~~----~~~v~~~a~~~L~~l  345 (450)
T 2jdq_A          324 ISILQTA----EFRTRKEAAWAITNA  345 (450)
T ss_dssp             HHHHHHS----CHHHHHHHHHHHHHH
T ss_pred             HHHHhcC----CHHHHHHHHHHHHHH
Confidence            9999862    347999999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.82  E-value=4.5e-19  Score=180.34  Aligned_cols=237  Identities=15%  Similarity=0.116  Sum_probs=200.5

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM  200 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL  200 (385)
                      .++..|...+...       +.+....++..|..++..   .+++..+... |+++.|+.+|++.  .+..++..|+++|
T Consensus        17 ~~i~~Lv~lL~~~-------~~~v~~~A~~~L~~l~~~---~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L   84 (529)
T 1jdh_A           17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL   84 (529)
T ss_dssp             CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhCCC-------CHHHHHHHHHHHHHHHcC---CccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence            3577777777654       788899999999999984   5677666654 8999999999863  4788999999999


Q ss_pred             HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      .+|+.+.+.+..+.+.|+++.|+++|++  ++++++..++++|.+++..++.++..+++.|+++.|+.+|++.+..+...
T Consensus        85 ~~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~  162 (529)
T 1jdh_A           85 HNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence            9998876667888999999999999986  46899999999999999988888999999999999999999988788888


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv  360 (385)
                      ++.+|++|+.+++         ++...+++.|+++.|+.+|+.+.+......++.+|.+|+..++++..+.+.|+++.|+
T Consensus       163 ~~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~  233 (529)
T 1jdh_A          163 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence            9999999987433         3445688899999999999987566677888999999999999999999999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          361 RCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       361 ~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .++.+.    +..+.+.++.+|++|
T Consensus       234 ~ll~~~----~~~~~~~a~~~L~~l  254 (529)
T 1jdh_A          234 LHLTDP----SQRLVQNCLWTLRNL  254 (529)
T ss_dssp             TTTTSS----CHHHHHHHHHHHHHH
T ss_pred             HHHhCC----ChHHHHHHHHHHHHH
Confidence            988753    346777777777653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.82  E-value=2.6e-19  Score=172.75  Aligned_cols=181  Identities=14%  Similarity=0.182  Sum_probs=155.7

Q ss_pred             cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 016639          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL  267 (385)
Q Consensus       189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv  267 (385)
                      +.+....|+..|..++.+.+...+|...||++.++. +|++  ++.+++..|+|+|++++..++.+++.+++.|++++|+
T Consensus        53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll  130 (296)
T 1xqr_A           53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            345567788999999887665678899999999999 9985  5789999999999999999999999999999999999


Q ss_pred             HHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hH
Q 016639          268 EILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE  345 (385)
Q Consensus       268 ~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e  345 (385)
                      .+|++. +..++++|+|+|++|+.+...         ....+.+.||+++|+.+|++. +..++..+|++|++|+.. ++
T Consensus       131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~---------~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~  200 (296)
T 1xqr_A          131 RLLDRDACDTVRVKALFAISCLVREQEA---------GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPE  200 (296)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHcCCcH---------HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChH
Confidence            999975 568999999999999865542         334577899999999999985 888999999999999875 68


Q ss_pred             HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .++.+++.|+++.|+.+|.+.  +.  .+...++.+|.+|
T Consensus       201 ~~~~vv~~g~i~~Lv~LL~~~--d~--~v~~~al~aL~~l  236 (296)
T 1xqr_A          201 HKGTLCSMGMVQQLVALVRTE--HS--PFHEHVLGALCSL  236 (296)
T ss_dssp             GHHHHHHTTHHHHHHHHHTSC--CS--THHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCC--Ch--hHHHHHHHHHHHH
Confidence            999999999999999999862  33  6888888888764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.80  E-value=2.5e-18  Score=181.33  Aligned_cols=236  Identities=15%  Similarity=0.115  Sum_probs=199.0

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      ++..|...+...       +......++..|..+|..   .+++..+... |+++.|+.+|++.  .+..++..|+.+|.
T Consensus        15 ~i~~Lv~lL~~~-------~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~   82 (644)
T 2z6h_A           15 AIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH   82 (644)
T ss_dssp             THHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence            466677777644       788999999999999985   4567666654 8999999999863  47889999999999


Q ss_pred             HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      +|+...+.+..+.+.|+++.|+++|++  ++..++..++++|.+++..++.++..+++.|+++.|+.+|++.+..++..+
T Consensus        83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a  160 (644)
T 2z6h_A           83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  160 (644)
T ss_dssp             HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence            998876666888999999999999986  478999999999999999888899999999999999999999887777778


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHH
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~  361 (385)
                      +.+|++|+..++         ++...+++.|+++.|+.+|+......++..++.+|.+|+...+++..+.+.|+++.|+.
T Consensus       161 ~~~L~~La~~~~---------~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~  231 (644)
T 2z6h_A          161 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  231 (644)
T ss_dssp             HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHhcCc---------HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            889999996332         34456888999999999999875567788999999999999999999999999999999


Q ss_pred             HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          362 CIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       362 ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.+.    +..+.+.++.+|++|
T Consensus       232 ll~~~----~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          232 HLTDP----SQRLVQNCLWTLRNL  251 (644)
T ss_dssp             TTTCS----CHHHHHHHHHHHHHH
T ss_pred             HHhcC----CHHHHHHHHHHHHHH
Confidence            88752    346777777777654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.76  E-value=2.1e-17  Score=178.56  Aligned_cols=237  Identities=16%  Similarity=0.122  Sum_probs=199.1

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM  200 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL  200 (385)
                      .++..|...+...       +......++..|..+|..   .+++..+.+. |+++.|+.+|+..  .+..+...|+++|
T Consensus       150 g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL  217 (780)
T 2z6g_A          150 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTL  217 (780)
T ss_dssp             HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhCC---ChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence            4677777777654       778899999999999984   5667777654 8999999999864  4788999999999


Q ss_pred             HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      .+|+...+.+..+.+.|+++.|+++|++  ++..++..++++|.++|..++.++..+++.|+++.|+.+|++.+..+...
T Consensus       218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~  295 (780)
T 2z6g_A          218 HNLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  295 (780)
T ss_dssp             HHHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence            9998775556788899999999999986  46899999999999999988889999999999999999999887788888


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv  360 (385)
                      ++.+|++|+..++         +....+++.|+++.|+.+|+..........++.+|.+|+...+++..+++.|+++.|+
T Consensus       296 a~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll  366 (780)
T 2z6g_A          296 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  366 (780)
T ss_dssp             HHHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG
T ss_pred             HHHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH
Confidence            9999999986432         3344577889999999999986556677788999999999889999999999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          361 RCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       361 ~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      .++.+.    +..+.+.++.+|++|
T Consensus       367 ~lL~~~----~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          367 LHLTDP----SQRLVQNCLWTLRNL  387 (780)
T ss_dssp             GGTTCS----CHHHHHHHHHHHHHH
T ss_pred             HHHcCC----chHHHHHHHHHHHHH
Confidence            988752    336777777777653

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.3e-16  Score=164.70  Aligned_cols=325  Identities=9%  Similarity=0.023  Sum_probs=223.3

Q ss_pred             CCCccccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcC-CC--------CCCCc
Q 016639           36 PFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQG-VD--------LSGIV  106 (385)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QG-vd--------Lsni~  106 (385)
                      -+.+.|+.||.+.+....    ..+..+..-=|+|.-|||-+-+=    ..+++..|+-++..+ -+        |.|+.
T Consensus       334 ~La~~~~~~L~~~~~~~~----~~AvEgLaYLSl~~~VKe~L~~d----~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKV----EMSVEALAYLSLKASVKIMIRSN----ESFTEILLTMIKSQKMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHH----HHHHHHHHHHTTSSHHHHHHHHC----HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCccHH----HHHHHHHHHHhCCHHHHHHHHhC----HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence            467789999998654432    25666666777777777764432    334555554443211 01        22443


Q ss_pred             cCCCCCCC---------------------CCC-------------chHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 016639          107 KCVPGESS---------------------LKD-------------NPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLF  150 (385)
Q Consensus       107 ~~~~~~~~---------------------~~~-------------~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al  150 (385)
                      ++.+....                     ...             ..+.  .++..|...+.+.       +......++
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~  478 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-------SPNCKQQVV  478 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHH
Confidence            33221100                     000             0000  2455555555443       677888999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh---CCCcHHHHHHHh
Q 016639          151 DKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILI  227 (385)
Q Consensus       151 ~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~---~ggi~~Lv~lL~  227 (385)
                      |.|..+|.   ++++|..+++.||+++|+.+|.+...........|+++|++|+...++...|-.   .|+|++|+++|.
T Consensus       479 ~aL~nLS~---d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~  555 (778)
T 3opb_A          479 RIIYNITR---SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP  555 (778)
T ss_dssp             HHHHHHHT---SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred             HHHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence            99999986   699999999999999999999875321123678999999999854432122211   389999999998


Q ss_pred             cCCCC-----------HHH-HHHHHHHHHHHhcCC----hhhHHHHHhC-CChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639          228 DGNED-----------PEI-LNSGFAVVAASATGN----EVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAIRVLLT  290 (385)
Q Consensus       228 ~~~~~-----------~~v-~~~a~~~L~~~~~~~----e~nr~~iv~~-G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~  290 (385)
                      ...+.           ..+ ...|+.+|.|+++.+    |+.|+.|++. |+++.|.++|.+.+..++++||++|+||+.
T Consensus       556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~  635 (778)
T 3opb_A          556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS  635 (778)
T ss_dssp             CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            32221           113 568999999999876    4568889986 999999999999888899999999999998


Q ss_pred             CCccch-hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cChHHHHHHHHc-CcHHHHHHHHHhcC
Q 016639          291 PDDDQV-VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAEN-GGIDALLRCIDDSG  367 (385)
Q Consensus       291 ~Dd~rv-~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-~~~e~c~~I~e~-GGl~~Lv~ll~~~~  367 (385)
                      +.+.+. .|... ++-   ...+.+++|+.++... |..++..++++|++++ ..+.+|+.|++. ||++.+++++++- 
T Consensus       636 ~~e~i~~k~~~~-~~~---~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~-  709 (778)
T 3opb_A          636 HPLTIAAKFFNL-ENP---QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ-  709 (778)
T ss_dssp             SGGGTGGGTSCC-SSH---HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             CcHHHHHHHHhh-cCc---hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc-
Confidence            766431 22110 000   0123589999999774 8889999999999996 567899999998 8999999999984 


Q ss_pred             CcCcHHHHHHHHHHHhcC
Q 016639          368 LQGNKTVARICCSLLSKV  385 (385)
Q Consensus       368 ~~~~~~v~k~a~~~Lr~l  385 (385)
                       +.+.++...++.+++||
T Consensus       710 -~~~~~l~~R~~~~l~NL  726 (778)
T 3opb_A          710 -IDDIELRQRLLMLFFGL  726 (778)
T ss_dssp             -TTCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHH
Confidence             24458999999998875

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.8e-15  Score=159.76  Aligned_cols=241  Identities=14%  Similarity=0.071  Sum_probs=190.2

Q ss_pred             hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHH
Q 016639          119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCL  197 (385)
Q Consensus       119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al  197 (385)
                      .+....+.++.++...       +.+.+..+++-|.++...   ++-|..+++. |+++.|+.+++..  .+..+...++
T Consensus       331 si~~La~~~~~~L~~~-------~~~~~~~AvEgLaYLSl~---~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Ygal  398 (778)
T 3opb_A          331 NLKQLSEIFINAISRR-------IVPKVEMSVEALAYLSLK---ASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGLL  398 (778)
T ss_dssp             CHHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHTTS---SHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHHH
T ss_pred             cHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCC---HHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHHH
Confidence            3456777888887654       567799999999999884   6667766554 6699999999852  4677899999


Q ss_pred             HHHHHHhcCCcc---------------------------------------chhHhhCCCcHHHHHHHhcCCCCHHHHHH
Q 016639          198 KTMALLVHDVQS---------------------------------------TETFRTGGGPKLLVNILIDGNEDPEILNS  238 (385)
Q Consensus       198 ~aLa~L~~~~~~---------------------------------------~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~  238 (385)
                      ..|+|++...+.                                       +..+++.|+++.|+.++++  +++.++..
T Consensus       399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re~  476 (778)
T 3opb_A          399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQQ  476 (778)
T ss_dssp             HHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHHH
T ss_pred             HHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHH
Confidence            999999975442                                       1345688999999999987  47899999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChH---HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHH
Q 016639          239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQRND---SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR  315 (385)
Q Consensus       239 a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~---v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~  315 (385)
                      ++|+|.+++ .+.++|..+++.|++++|+.+|.+++..   ...+|+++|.+|+...+....|++.       .-.|+|+
T Consensus       477 A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~-------~~~~aI~  548 (778)
T 3opb_A          477 VVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY-------SALNAIP  548 (778)
T ss_dssp             HHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS-------CSTTHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC-------ccccchH
Confidence            999999997 6799999999999999999999998653   6788999999999766666555431       0138999


Q ss_pred             HHHHHHhcCCC-H------------HHHHHHHHHHHHhhcCh-----HHHHHHHHc-CcHHHHHHHHHhcCCcCcHHHHH
Q 016639          316 ALVHSLHAGLS-S------------PSLISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVAR  376 (385)
Q Consensus       316 ~Lv~lL~~~~~-~------------~v~~~a~~aL~~La~~~-----e~c~~I~e~-GGl~~Lv~ll~~~~~~~~~~v~k  376 (385)
                      ||+++|...+. .            --..+++.||.|||..+     +.++.|++. |+++.|+++|.+    .|..+.+
T Consensus       549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s----~n~~Vrr  624 (778)
T 3opb_A          549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD----ENVPLQR  624 (778)
T ss_dssp             HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC----SSHHHHH
T ss_pred             HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC----CCHHHHH
Confidence            99999983221 1            12568999999999875     568889985 999999999975    3448999


Q ss_pred             HHHHHHhcC
Q 016639          377 ICCSLLSKV  385 (385)
Q Consensus       377 ~a~~~Lr~l  385 (385)
                      .||.+|.||
T Consensus       625 AA~elI~NL  633 (778)
T 3opb_A          625 STLELISNM  633 (778)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.22  E-value=8.3e-10  Score=115.28  Aligned_cols=216  Identities=11%  Similarity=0.078  Sum_probs=171.3

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChh-hHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM  200 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~-~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL  200 (385)
                      .+.-|...+.+.       +......++..|+.+|..  .++ .+..+..+ +|++.||.+|..   ..+.+...++..|
T Consensus       123 ~i~~Ll~lL~~~-------df~vR~~alqlL~~L~~~--r~~~~Q~~Il~~p~gi~~Lv~lL~d---~rE~iRneallLL  190 (651)
T 3grl_A          123 NVTLLLSLLEEF-------DFHVRWPGVKLLTSLLKQ--LGPQVQQIILVSPMGVSRLMDLLAD---SREVIRNDGVLLL  190 (651)
T ss_dssp             HHHHHHHHTTCC-------CHHHHHHHHHHHHHHHHH--SHHHHHHHHHHSTTHHHHHHGGGGC---SSHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCc-------cHHHHHHHHHHHHHHHhc--CcHHHHHHHHhCcccHHHHHHHHhC---chHHHHHHHHHHH
Confidence            345566666554       788888999999999997  666 77777755 999999999986   3677899999999


Q ss_pred             HHHhcCCccchhHh-hCCCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--
Q 016639          201 ALLVHDVQSTETFR-TGGGPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--  275 (385)
Q Consensus       201 a~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--  275 (385)
                      .+|+.++..-+.++ -.||.+.|+.+++...  +...++..++.+|.++...|..|+..|.+.|+++.|..+|.....  
T Consensus       191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~  270 (651)
T 3grl_A          191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS  270 (651)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSS
T ss_pred             HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccc
Confidence            99999887655555 5599999999998632  245788999999999999999999999999999999999976533  


Q ss_pred             ----HHHHH---HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HH
Q 016639          276 ----DSIQS---LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EI  346 (385)
Q Consensus       276 ----~v~k~---A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~  346 (385)
                          ....+   +..+++-|...+..   .+.+..|++.+.++|++++|++++.... ...++..++.+++.+...| .+
T Consensus       271 ~W~~Qk~~N~~~~L~iIrlLv~~~~~---~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~  347 (651)
T 3grl_A          271 GWSAQKVTNLHLMLQLVRVLVSPNNP---PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN  347 (651)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTCTTSC---HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence                24455   66677777765431   2346678999999999999999998854 5678889999999988776 55


Q ss_pred             HHHHHHc
Q 016639          347 CKSVAEN  353 (385)
Q Consensus       347 c~~I~e~  353 (385)
                      ...|.+.
T Consensus       348 Q~~fa~~  354 (651)
T 3grl_A          348 QDYFASV  354 (651)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhc
Confidence            6667654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.20  E-value=1.9e-09  Score=112.60  Aligned_cols=265  Identities=14%  Similarity=0.136  Sum_probs=190.7

Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCCh
Q 016639           84 PTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGS  163 (385)
Q Consensus        84 ~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~  163 (385)
                      .-|=.++||..+.+=       .|+.+.      .....++..|...+..+     ..|.|.++.+|+.|..+....+++
T Consensus        35 l~eDRR~Av~~Lk~~-------sk~y~~------~Vg~~~l~~li~~L~~d-----~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           35 LLDDRRNAVRALKSL-------SKKYRL------EVGIQAMEHLIHVLQTD-----RSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             SHHHHHHHHHHHHHT-------TTTTTT------HHHHHTHHHHHHHHHSC-----TTCHHHHHHHHHHHHHHHCCC---
T ss_pred             chhHHHHHHHHHHHH-------HHHhHH------HhhhhhHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcc
Confidence            445678888777653       233322      13336788888888764     237889999999997766541111


Q ss_pred             h---------------hH-HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhC-CCcHHHHH
Q 016639          164 V---------------NA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTG-GGPKLLVN  224 (385)
Q Consensus       164 ~---------------~r-~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~-ggi~~Lv~  224 (385)
                      +               +. .++.+.+.|+.|+.+|..   .+-.+...+++.|..|+.+.+.  ...|+++ +||+.|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~---~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~  173 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE---FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD  173 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC---ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence            0               11 234667899999999987   5889999999999999987765  3667755 99999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HHHHHHHHHHHHhcCCCccchhhhh
Q 016639          225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQ  300 (385)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~~Dd~rv~~g~  300 (385)
                      +|.+  +...+...++.+|.+++.+|.+.+..++-+|+++.|+.+++....    .+++.+...|.+|...+-       
T Consensus       174 lL~d--~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~-------  244 (651)
T 3grl_A          174 LLAD--SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN-------  244 (651)
T ss_dssp             GGGC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-------
T ss_pred             HHhC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-------
Confidence            9986  357788899999999998888776666678999999999987443    788889999999986432       


Q ss_pred             chhHHHHHHhcCcHHHHHHHHhcCCC-----HHHHHH---HHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHHHh
Q 016639          301 VYGYARRFAKIGIARALVHSLHAGLS-----SPSLIS---ASIALKAVAVN-------DEICKSVAENGGIDALLRCIDD  365 (385)
Q Consensus       301 a~~~a~~I~e~Ggi~~Lv~lL~~~~~-----~~v~~~---a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll~~  365 (385)
                        .|+..|.|.|+++.|..+|.....     .....+   +..++.-|...       ..+...+.+.|++..|++++..
T Consensus       245 --sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~  322 (651)
T 3grl_A          245 --SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA  322 (651)
T ss_dssp             --HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             --HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence              467789999999999999975321     123344   34444555433       2466899999999999999876


Q ss_pred             cCCcCcHHHHHHHHHHH
Q 016639          366 SGLQGNKTVARICCSLL  382 (385)
Q Consensus       366 ~~~~~~~~v~k~a~~~L  382 (385)
                      ..-..  .+..+++.++
T Consensus       323 ~~~p~--~i~~~Al~tl  337 (651)
T 3grl_A          323 TGVPA--DILTETINTV  337 (651)
T ss_dssp             SSCCH--HHHHHHHHHH
T ss_pred             CCCCH--HHHHHHHHHH
Confidence            32222  5555554443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.83  E-value=1e-08  Score=109.24  Aligned_cols=197  Identities=12%  Similarity=0.104  Sum_probs=143.1

Q ss_pred             HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhc
Q 016639          170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASAT  248 (385)
Q Consensus       170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~~~~  248 (385)
                      .+...+.+|++.|++   .++.....|+++|++|+.+...++.+...+++..++. +|.+  ++.+|...|+++|+++|.
T Consensus        31 ~~~~~i~Pll~~L~S---~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D--~~~~Vr~~A~gaLrnL~~  105 (684)
T 4gmo_A           31 LREDKILPVLKDLKS---PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD--NNIDSRAAGWEILKVLAQ  105 (684)
T ss_dssp             HHHHTTHHHHHHHSS---SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC--SCHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHh
Confidence            334467778888887   4788899999999999986555678889999987765 5554  578999999999999986


Q ss_pred             C-ChhhHHHHHhCCChHHHHHHHccCCh---------------------HHHHHHHHHHHHhcCCCccchhhhhchhHHH
Q 016639          249 G-NEVVKESYMELKIDELILEILSRQRN---------------------DSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (385)
Q Consensus       249 ~-~e~nr~~iv~~G~i~~Lv~lL~~~~~---------------------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~  306 (385)
                      . ..+.+..+++.|++++|..+|++...                     ++..+++.+|.+|+...+         +...
T Consensus       106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~---------~~~~  176 (684)
T 4gmo_A          106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD---------EIHE  176 (684)
T ss_dssp             HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH---------HHHH
T ss_pred             hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHH
Confidence            4 34677888899999999999865211                     344568888999874332         2233


Q ss_pred             HHHhcCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHH--HHhcCCcCcHHHHHHHHHH
Q 016639          307 RFAKIGIARALVHSLHAGL--SSPSLISASIALKAVAVND-EICKSVAENGGIDALLRC--IDDSGLQGNKTVARICCSL  381 (385)
Q Consensus       307 ~I~e~Ggi~~Lv~lL~~~~--~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~l--l~~~~~~~~~~v~k~a~~~  381 (385)
                      .+.+.|+++.|+.+|....  ..++...++..|..++..+ ++.+.|.+.|....+.-+  +.++.+.    ....+|.+
T Consensus       177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~----~~~la~gi  252 (684)
T 4gmo_A          177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP----RAVMACGV  252 (684)
T ss_dssp             HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT----THHHHHHH
T ss_pred             HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH----HHHHHHHH
Confidence            5677899999999986543  4578889999999998875 788899888765433222  2333222    23456666


Q ss_pred             Hhc
Q 016639          382 LSK  384 (385)
Q Consensus       382 Lr~  384 (385)
                      |+|
T Consensus       253 L~N  255 (684)
T 4gmo_A          253 LHN  255 (684)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.58  E-value=3.7e-06  Score=75.00  Aligned_cols=182  Identities=13%  Similarity=0.031  Sum_probs=138.0

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      +++.|...+.+.       +......+++.|.....             .++++.|+.+|.+   .+..+...|+++|+.
T Consensus        20 ~~~~L~~~L~~~-------~~~vR~~A~~~L~~~~~-------------~~~~~~L~~~l~~---~~~~vr~~a~~aL~~   76 (211)
T 3ltm_A           20 KVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-------------ERAVEPLIKALKD---EDAWVRRAAADALGQ   76 (211)
T ss_dssp             GHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-------------ccHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence            466677777654       67777788888877632             2579999999986   488899999999998


Q ss_pred             HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 016639          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY  282 (385)
Q Consensus       203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~  282 (385)
                      +..          .++++.|+++|.+  ++..+...++++|..+.  +         ...++.|+.+|.+.+..++..|+
T Consensus        77 ~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~  133 (211)
T 3ltm_A           77 IGD----------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDEDWFVRIAAA  133 (211)
T ss_dssp             HCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred             hCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHHHHHHHH
Confidence            642          2467889999875  57889999999998763  2         24788999999888878999999


Q ss_pred             HHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH
Q 016639          283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRC  362 (385)
Q Consensus       283 ~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l  362 (385)
                      ++|..+..                    ...++.|+.+|... ++.+...++.+|..+..          ...++.|.++
T Consensus       134 ~aL~~~~~--------------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~  182 (211)
T 3ltm_A          134 FALGEIGD--------------------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG----------ERVRAAMEKL  182 (211)
T ss_dssp             HHHHHHCC--------------------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS----------HHHHHHHHHH
T ss_pred             HHHHHcCC--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------hhHHHHHHHH
Confidence            99988742                    23578899998663 77899999999998853          2356677787


Q ss_pred             HHhcCCcCcHHHHHHHHHHHhcC
Q 016639          363 IDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       363 l~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +.+    .+..|-+.+..+|.++
T Consensus       183 l~d----~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          183 AET----GTGFARKVAVNYLETH  201 (211)
T ss_dssp             HHH----CCHHHHHHHHHHHHC-
T ss_pred             HhC----CCHHHHHHHHHHHHhc
Confidence            775    3347888888888764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.51  E-value=2.8e-07  Score=98.05  Aligned_cols=182  Identities=10%  Similarity=0.014  Sum_probs=133.2

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH-HHhcccCCcHhHHHHHHHHHHHHhcC--CccchhHhhCCC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS-ICYKMRCGSKRVLDSCLKTMALLVHD--VQSTETFRTGGG  218 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~-lL~~~~~~d~~vl~~Al~aLa~L~~~--~~~~~~i~~~gg  218 (385)
                      +.+....|+++|+++|.   ++..|..+.+.|+++.++. +|..   .+..+...|.++|.||+.+  .+.+..++..|+
T Consensus        47 ~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D---~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i  120 (684)
T 4gmo_A           47 DAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTD---NNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV  120 (684)
T ss_dssp             CCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTC---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence            67788999999999996   7999999999999988776 4554   5789999999999999854  334567788999


Q ss_pred             cHHHHHHHhcCCC------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC---hH
Q 016639          219 PKLLVNILIDGNE------------D-------PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---ND  276 (385)
Q Consensus       219 i~~Lv~lL~~~~~------------~-------~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~---~~  276 (385)
                      ++.|..+|+....            .       .++....+.+|+++|..+++....|.+.|+++.|+..|.+..   .+
T Consensus       121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~  200 (684)
T 4gmo_A          121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQD  200 (684)
T ss_dssp             HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHH
Confidence            9999999864210            0       124456778888889888888889999999999999985532   37


Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcH---HHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA---RALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi---~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      ++..|+.+|..|+.+.+         +....+.+.|..   ..+..+ ..+.+. ....+|+.|.++
T Consensus       201 v~~~a~~~L~~ls~dn~---------~~~~~i~~~~~~~~~~~ll~~-~~~~~~-~~~la~giL~Ni  256 (684)
T 4gmo_A          201 IYEEAISCLTTLSEDNL---------KVGQAITDDQETHVYDVLLKL-ATGTDP-RAVMACGVLHNV  256 (684)
T ss_dssp             HHHHHHHHHHHHHTTCH---------HHHHHHHTCCSSCHHHHHHHH-HHSSCT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCH---------HHHHHHHhcchHHHHHHHHHH-hcCCcH-HHHHHHHHHHhH
Confidence            88899999999987554         223345555532   233332 232222 234567777776

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.46  E-value=1.6e-05  Score=70.25  Aligned_cols=183  Identities=13%  Similarity=0.046  Sum_probs=138.8

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .....+...+.+.       +......+++.|.....             .++++.|+.+|..   .+..+...|+++|+
T Consensus        14 ~~~~~~i~~L~~~-------~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~~---~~~~vr~~a~~~L~   70 (201)
T 3ltj_A           14 EKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-------------ERAVEPLIKALKD---EDAWVRRAAADALG   70 (201)
T ss_dssp             HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTC---SSHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCC-------CHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence            3456677777654       77888888888887632             2478999999976   58889999999999


Q ss_pred             HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      .+..          ..+++.|+.+|.+  ++..+...++++|..+.  ++         ..++.|+.+|.+.+..++..|
T Consensus        71 ~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a  127 (201)
T 3ltj_A           71 QIGD----------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDEDWFVRIAA  127 (201)
T ss_dssp             HHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHH
T ss_pred             hhCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCCCHHHHHHH
Confidence            8632          2467889999975  57889999999998753  22         478889999988877889999


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHH
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR  361 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~  361 (385)
                      +++|..+..                    ...++.|+.+|... ++.+...++.+|..+..          ..+++.|.+
T Consensus       128 ~~aL~~~~~--------------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~----------~~~~~~L~~  176 (201)
T 3ltj_A          128 AFALGEIGD--------------------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG----------ERVRAAMEK  176 (201)
T ss_dssp             HHHHHHHTC--------------------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS----------HHHHHHHHH
T ss_pred             HHHHHHhCC--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------hhHHHHHHH
Confidence            999987742                    24578999999763 77899999999998842          135677778


Q ss_pred             HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          362 CIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       362 ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.+    .+..|-..+..+|.+|
T Consensus       177 ~l~d----~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          177 LAET----GTGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHH----CCHHHHHHHHHHHHHC
T ss_pred             HHhC----CCHHHHHHHHHHHHHH
Confidence            8866    2347888888887764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.46  E-value=1.1e-05  Score=75.22  Aligned_cols=130  Identities=15%  Similarity=0.029  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      +++.|...+.+.       +......+++.|.....    +         ++++.|+.+|..   .++.+...|+++|+.
T Consensus        24 ~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~~----~---------~~~~~L~~~l~d---~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           24 NDDELFRLLDDH-------NSLKRISSARVLQLRGG----Q---------DAVRLAIEFCSD---KNYIRRDIGAFILGQ   80 (280)
T ss_dssp             CHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC----H---------HHHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcC-------CHHHHHHHHHHHHccCC----c---------hHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence            356677776543       66777788888877732    2         368899999986   478889999999988


Q ss_pred             HhcCCccchhHhhCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639          203 LVHDVQSTETFRTGGGPKLLVNILI---DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (385)
Q Consensus       203 L~~~~~~~~~i~~~ggi~~Lv~lL~---~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k  279 (385)
                      +.....         .++.++.+|.   ...++..+...++++|..++..+.....     .+++.|+.+|.+.+..++.
T Consensus        81 l~~~~~---------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~  146 (280)
T 1oyz_A           81 IKICKK---------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRR  146 (280)
T ss_dssp             SCCCTT---------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHH
T ss_pred             hccccc---------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHH
Confidence            643221         1233334332   1235788999999999987644332211     3466777777776667777


Q ss_pred             HHHHHHHHhc
Q 016639          280 SLYDAIRVLL  289 (385)
Q Consensus       280 ~A~~aL~~Lt  289 (385)
                      .|+++|..+.
T Consensus       147 ~a~~aL~~~~  156 (280)
T 1oyz_A          147 ATAFAISVIN  156 (280)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHhcC
Confidence            7777777653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.31  E-value=6.8e-05  Score=69.67  Aligned_cols=208  Identities=9%  Similarity=-0.042  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhc--ccCCcHhHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYK--MRCGSKRVLDSCLKT  199 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~--~~~~d~~vl~~Al~a  199 (385)
                      .++..|...+.+.       +......+++.|..+...   +.         .++.++.+|..  ..+.+..+...|+++
T Consensus        54 ~~~~~L~~~l~d~-------~~~vR~~A~~aL~~l~~~---~~---------~~~~l~~~L~~~~~~d~~~~vr~~a~~a  114 (280)
T 1oyz_A           54 DAVRLAIEFCSDK-------NYIRRDIGAFILGQIKIC---KK---------CEDNVFNILNNMALNDKSACVRATAIES  114 (280)
T ss_dssp             HHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCCC---TT---------THHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC-------CHHHHHHHHHHHHHhccc---cc---------cchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3456667776654       667777888888777532   11         23334333321  112578899999999


Q ss_pred             HHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639          200 MALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ  279 (385)
Q Consensus       200 La~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k  279 (385)
                      |+.+..+...    .....++.|+.+|.+  ++..+...++++|..+.  +         ..+++.|+.+|.+.+..+..
T Consensus       115 L~~l~~~~~~----~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~  177 (280)
T 1oyz_A          115 TAQRCKKNPI----YSPKIVEQSQITAFD--KSTNVRRATAFAISVIN--D---------KATIPLLINLLKDPNGDVRN  177 (280)
T ss_dssp             HHHHHHHCGG----GHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHH
T ss_pred             HHHHhccCCc----ccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcC--C---------HHHHHHHHHHHcCCCHHHHH
Confidence            9998643211    122346777777764  57788888888887542  2         24788889988887777888


Q ss_pred             HHHHHHHHhcCCCc--------------cchhhhhchhHHHHHH---hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          280 SLYDAIRVLLTPDD--------------DQVVASQVYGYARRFA---KIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       280 ~A~~aL~~Lt~~Dd--------------~rv~~g~a~~~a~~I~---e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                      .|+++|..+..++.              ..+.    ..-+..+.   ....++.|+.+|+.. +  +...+..+|..+..
T Consensus       178 ~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR----~~A~~aL~~~~~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          178 WAAFAININKYDNSDIRDCFVEMLQDKNEEVR----IEAIIGLSYRKDKRVLSVLCDELKKN-T--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHH----HHHHHHHHHTTCGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC
T ss_pred             HHHHHHHhhccCcHHHHHHHHHHhcCCCHHHH----HHHHHHHHHhCCHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc
Confidence            88888887742111              0000    00011111   122445555555331 1  33344444444432


Q ss_pred             ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       343 ~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                                ...++.|.+++.++.   +.++.+.+...|+++
T Consensus       251 ----------~~~~~~L~~~l~~~~---~~~~~~~~~~~l~~~  280 (280)
T 1oyz_A          251 ----------KTLLPVLDTMLYKFD---DNEIITSAIDKLKRS  280 (280)
T ss_dssp             ----------GGGHHHHHHHHTTSS---CCHHHHHHHHHHTCC
T ss_pred             ----------hhhhHHHHHHHhcCC---CcHHHHHHHHHhhcC
Confidence                      246788888887643   236888888887763

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.12  E-value=4.9e-05  Score=67.59  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639          172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (385)
Q Consensus       172 ~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (385)
                      .+.++.|+.+|++   .+..+...|+.+|+.+-.          ..+++.|+++|.+  ++..+...++++|..+.  + 
T Consensus        18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~--~-   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIG--D-   79 (211)
T ss_dssp             GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC--C-
T ss_pred             HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC--C-
Confidence            3579999999986   588999999999997632          2567999999985  57899999999998753  2 


Q ss_pred             hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (385)
Q Consensus       252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~  331 (385)
                              .+.++.|+.+|.+.+..++..|+++|..+..                    .+.++.|+.+|.. .++.+..
T Consensus        80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~  130 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI  130 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence                    3578899999988887888889999987742                    2357899999866 3788999


Q ss_pred             HHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       332 ~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      .++.+|..+..          ...++.|.+++.+    .+..|-..++.+|.+
T Consensus       131 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~  169 (211)
T 3ltm_A          131 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGE  169 (211)
T ss_dssp             HHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence            99999998853          2467777777754    334677777777754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.07  E-value=0.00015  Score=63.80  Aligned_cols=178  Identities=16%  Similarity=0.056  Sum_probs=129.3

Q ss_pred             HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHH
Q 016639           77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIEL  156 (385)
Q Consensus        77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~l  156 (385)
                      |+.+.-+-.+....|+..+...|-                 .   .+++.|...+...       +......+++.|...
T Consensus        20 i~~L~~~~~~vr~~A~~~L~~~~~-----------------~---~~~~~L~~~l~~~-------~~~vr~~a~~~L~~~   72 (201)
T 3ltj_A           20 IKNLQDDSYYVRRAAAYALGKIGD-----------------E---RAVEPLIKALKDE-------DAWVRRAAADALGQI   72 (201)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHCC-----------------G---GGHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHhcCC-----------------h---hHHHHHHHHHcCC-------CHHHHHHHHHHHHhh
Confidence            334544555566777766654441                 0   2245566666543       667777888888776


Q ss_pred             hcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHH
Q 016639          157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEIL  236 (385)
Q Consensus       157 c~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~  236 (385)
                      ..    +         ++++.|+.+|..   .++.+...|+++|+.+..          ...++.|+.+|.+  ++..+.
T Consensus        73 ~~----~---------~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr  124 (201)
T 3ltj_A           73 GD----E---------RAVEPLIKALKD---EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD--EDWFVR  124 (201)
T ss_dssp             CC----G---------GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SSHHHH
T ss_pred             CC----H---------HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC--CCHHHH
Confidence            32    2         478999999986   588999999999998632          2367889999864  578899


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHH
Q 016639          237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA  316 (385)
Q Consensus       237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~  316 (385)
                      ..++++|..+.  .         ...++.|+.+|.+.+..++..|+++|..+..                    ..+++.
T Consensus       125 ~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------------------~~~~~~  173 (201)
T 3ltj_A          125 IAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------------ERVRAA  173 (201)
T ss_dssp             HHHHHHHHHHT--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------------HHHHHH
T ss_pred             HHHHHHHHHhC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------hhHHHH
Confidence            99999998763  2         3578899999988877899999999998831                    124678


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          317 LVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       317 Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                      |..+|... ++.+...+..+|.++.
T Consensus       174 L~~~l~d~-~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          174 MEKLAETG-TGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            88888774 7788889999988764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.93  E-value=9.1e-05  Score=79.89  Aligned_cols=336  Identities=14%  Similarity=0.072  Sum_probs=180.2

Q ss_pred             cCChhhhhHHhhhhhccCCCCCCCCCCccccccccc--cCCCcccCCCc----h-hh---hhhhHHHHHHHHHhhHHhcC
Q 016639           12 FSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVR--TDLTAHEMGPP----K-TV---RTISQEAFDEVVKENMEDLG   81 (385)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~---~~isqetfd~~v~eni~~f~   81 (385)
                      +|++.+.+-++++.|-...+-|  ++.+.....+..  +.......-++    + ..   +.++.+. .+.||+++-..=
T Consensus        23 ~s~d~~~r~~Ae~~L~~~~~~p--~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~-~~~ik~~ll~~l   99 (852)
T 4fdd_A           23 QSPDTTIQRTVQQKLEQLNQYP--DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV-TDFIKSECLNNI   99 (852)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH-HHHHHHHHHTTT
T ss_pred             hCcCHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHH
Confidence            4667777777777766554422  333333333332  11111111111    0 00   1244554 456666654433


Q ss_pred             CChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCC
Q 016639           82 MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNE  161 (385)
Q Consensus        82 m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~  161 (385)
                      -+++..++..+.+.      ++.|.+..+.....      +.+..|...+.+.       +......++..|..+|+.  
T Consensus       100 ~~~~~~vr~~~a~~------i~~ia~~~~~~~wp------~ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~--  158 (852)
T 4fdd_A          100 GDSSPLIRATVGIL------ITTIASKGELQNWP------DLLPKLCSLLDSE-------DYNTCEGAFGALQKICED--  158 (852)
T ss_dssp             TCSSHHHHHHHHHH------HHHHHHHTTTTTCT------THHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHH--
T ss_pred             cCCCHHHHHHHHHH------HHHHHHhcCccccH------HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHH--
Confidence            35555555544332      11121111111111      3455666666543       566777889999999874  


Q ss_pred             ChhhHHHHH----HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh--CCCcHHHHHHHhcCCCCHHH
Q 016639          162 GSVNAAVAT----KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEI  235 (385)
Q Consensus       162 ~~~~r~~~~----~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v  235 (385)
                      .+..-..-.    -...+|.|+.++++   .+..+...|+++|+.++....  +.+..  ...++.++.++.+  ++.++
T Consensus       159 ~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d--~~~~v  231 (852)
T 4fdd_A          159 SAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGD--EEPEV  231 (852)
T ss_dssp             HTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTC--CCHHH
T ss_pred             hHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCC--CCHHH
Confidence            222110000    12346666666664   578899999999998876532  22211  1345666676654  57899


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC------------------------
Q 016639          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP------------------------  291 (385)
Q Consensus       236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~------------------------  291 (385)
                      ...+++++..++......-...++ ++++.++.++++.+..++..|+.++..++..                        
T Consensus       232 r~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~  310 (852)
T 4fdd_A          232 RKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY  310 (852)
T ss_dssp             HHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999988655543222222 4778888888887778888899888777531                        


Q ss_pred             ----------C---c-----------cchhhhhchhHHHHHHhcC----cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          292 ----------D---D-----------DQVVASQVYGYARRFAKIG----IARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       292 ----------D---d-----------~rv~~g~a~~~a~~I~e~G----gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                                |   |           .|.....+.+.........    .++.+.+.|.+ .+..++..++++|.+++..
T Consensus       311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~  389 (852)
T 4fdd_A          311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEG  389 (852)
T ss_dssp             CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTT
T ss_pred             cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc
Confidence                      1   0           0111111111111111112    33444444544 3667888999999999865


Q ss_pred             hHH-HHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          344 DEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       344 ~e~-c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ..- ..... .+.++.++.++.    +.+..|.+.++.+|.++
T Consensus       390 ~~~~~~~~l-~~~l~~l~~~l~----d~~~~Vr~~a~~~l~~l  427 (852)
T 4fdd_A          390 CMQGMIPYL-PELIPHLIQCLS----DKKALVRSITCWTLSRY  427 (852)
T ss_dssp             THHHHGGGH-HHHHHHHHHHTT----CSSHHHHHHHHHHHHHT
T ss_pred             chHHHHHHH-HHHHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            321 11111 234555666554    34557888888887653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.84  E-value=0.00026  Score=71.61  Aligned_cols=232  Identities=12%  Similarity=0.048  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHcCc--HHHHHHHHhccc------------CC--cHhHHHHHHHHHHHHhcCC
Q 016639          144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGG--VELVCSICYKMR------------CG--SKRVLDSCLKTMALLVHDV  207 (385)
Q Consensus       144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Ga--ip~Lv~lL~~~~------------~~--d~~vl~~Al~aLa~L~~~~  207 (385)
                      +..--++..|..+++.   ++.|..+.++++  +|+++..++...            .+  ...++..++-+++-|+...
T Consensus       183 ~~~~i~v~~L~~Ll~~---~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~  259 (480)
T 1ho8_A          183 DTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP  259 (480)
T ss_dssp             HHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred             chHHHHHHHHHHHhcc---hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH
Confidence            3344688999999984   999999877654  788877655321            01  2456778888888887764


Q ss_pred             ccchhHhhCCCc--HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh----hh-HHHHHhCCChHHHHHHHccC--ChHHH
Q 016639          208 QSTETFRTGGGP--KLLVNILIDGNEDPEILNSGFAVVAASATGNE----VV-KESYMELKIDELILEILSRQ--RNDSI  278 (385)
Q Consensus       208 ~~~~~i~~~ggi--~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e----~n-r~~iv~~G~i~~Lv~lL~~~--~~~v~  278 (385)
                      +..+.+...+.+  ..|+++++. ....+|++-++.+++|+.....    .. ++.++..++ ++++..|...  +++-+
T Consensus       260 ~~~~~l~~~~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl  337 (480)
T 1ho8_A          260 VFANELVQKYLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL  337 (480)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH
Confidence            433444444422  456677776 3578999999999999887652    11 223333444 5566666442  44333


Q ss_pred             HHHHHHH--------HHhcCCCccchhhhh-------ch-------hHHHHHHhc--CcHHHHHHHHhcC---------C
Q 016639          279 QSLYDAI--------RVLLTPDDDQVVASQ-------VY-------GYARRFAKI--GIARALVHSLHAG---------L  325 (385)
Q Consensus       279 k~A~~aL--------~~Lt~~Dd~rv~~g~-------a~-------~~a~~I~e~--Ggi~~Lv~lL~~~---------~  325 (385)
                      .+-...|        ..||.-|..+.+.-.       .|       +|+++|-+.  -.++.|+++|.+.         .
T Consensus       338 ~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~  417 (480)
T 1ho8_A          338 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ  417 (480)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCC
Confidence            3333322        334444444433222       12       778888754  3689999999852         2


Q ss_pred             CHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       326 ~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      |+.++.-||.=++.++.. ++-+..+.+.||=+.++++|.    |+|.+|.++|+.++-+
T Consensus       418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~----h~d~~Vr~~AL~avQk  473 (480)
T 1ho8_A          418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN----HSDSRVKYEALKATQA  473 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS----CSSHHHHHHHHHHHHH
T ss_pred             CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence            567888899999988864 577788889999999999985    4566899999988754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.47  E-value=0.0021  Score=66.71  Aligned_cols=145  Identities=10%  Similarity=-0.028  Sum_probs=101.3

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      .+..+...+...       ++.....|+.++..+++.  +++..   .+.+.++.|..+|..   .++.++..|+.+|..
T Consensus       122 l~~~l~~~L~d~-------~~~VRk~A~~al~~i~~~--~p~~~---~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~  186 (591)
T 2vgl_B          122 LCEPLRKCLKDE-------DPYVRKTAAVCVAKLHDI--NAQMV---EDQGFLDSLRDLIAD---SNPMVVANAVAALSE  186 (591)
T ss_dssp             HHHHHHHHSSCS-------CHHHHHHHHHHHHHHHHS--SCCCH---HHHHHHHHHHHTTSC---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhh--Chhhc---ccccHHHHHHHHhCC---CChhHHHHHHHHHHH
Confidence            345566666544       778888999999999986  66522   235678999999875   588999999999999


Q ss_pred             HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      ++...+.. ......+.++.|+..|..  .++-.+...++++...+..++...     ...++.+..+|++.+..|+.+|
T Consensus       187 i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea  259 (591)
T 2vgl_B          187 ISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSA  259 (591)
T ss_dssp             HTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHH
T ss_pred             HHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHH
Confidence            87654311 001112335666776664  356667777888877664443332     2456788888887777899999


Q ss_pred             HHHHHHhc
Q 016639          282 YDAIRVLL  289 (385)
Q Consensus       282 ~~aL~~Lt  289 (385)
                      ++++..+.
T Consensus       260 ~~~i~~l~  267 (591)
T 2vgl_B          260 VKVLMKFL  267 (591)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHHh
Confidence            99999986

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.36  E-value=0.0039  Score=67.06  Aligned_cols=230  Identities=14%  Similarity=0.010  Sum_probs=137.6

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      ..++.|...+.+.       +.+....+++.|..+++.  .+..-.-.. .+.++.++.+++.   .+..+...|+..+.
T Consensus       215 ~~l~~l~~~~~d~-------~~~vr~~a~~~L~~l~~~--~~~~~~~~l-~~l~~~l~~~~~~---~~~~vr~~a~e~l~  281 (852)
T 4fdd_A          215 SFIENLFALAGDE-------EPEVRKNVCRALVMLLEV--RMDRLLPHM-HNIVEYMLQRTQD---QDENVALEACEFWL  281 (852)
T ss_dssp             HHHHHHHHHHTCC-------CHHHHHHHHHHHHHHHHH--CHHHHGGGH-HHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh--CHHHHHHHH-HHHHHHHHHHccC---CcHHHHHHHHHHHH
Confidence            4566666655443       677788899999999875  443211111 1366777777765   47889999999999


Q ss_pred             HHhcCCccchhHhhC---CCcHHHHHHHh----------cC--C--------CCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 016639          202 LLVHDVQSTETFRTG---GGPKLLVNILI----------DG--N--------EDPEILNSGFAVVAASATGNEVVKESYM  258 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~---ggi~~Lv~lL~----------~~--~--------~~~~v~~~a~~~L~~~~~~~e~nr~~iv  258 (385)
                      .++..... ..++..   .-++.++..|.          ..  .        .+-.+...++.++..++....+   .++
T Consensus       282 ~l~~~~~~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~  357 (852)
T 4fdd_A          282 TLAEQPIC-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL  357 (852)
T ss_dssp             HHTTSTTH-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred             HHhcchhH-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH
Confidence            88764321 122211   22444555542          11  0        1113455666676666543221   122


Q ss_pred             hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639          259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (385)
Q Consensus       259 ~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~  338 (385)
                       ..+++.+...|.+.+..++..|+++|.+++..-...         .... -.+.++.|+.+|+.. ++.|+..++++|.
T Consensus       358 -~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~---------~~~~-l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~  425 (852)
T 4fdd_A          358 -PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG---------MIPY-LPELIPHLIQCLSDK-KALVRSITCWTLS  425 (852)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH---------HGGG-HHHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH---------HHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence             246777888888777788888999999998533211         0001 135688999988763 7789999999999


Q ss_pred             HhhcChHH-HHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          339 AVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       339 ~La~~~e~-c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +++..-.. .....-.+.++.+++.|.+    .+..+.+.+|.+|.+
T Consensus       426 ~l~~~~~~~~~~~~~~~ll~~L~~~L~d----~~~~vr~~a~~aL~~  468 (852)
T 4fdd_A          426 RYAHWVVSQPPDTYLKPLMTELLKRILD----SNKRVQEAACSAFAT  468 (852)
T ss_dssp             HTHHHHHHSCTTTTHHHHHHHHHHHHTC----SSHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence            98753110 0000111345566666654    345888999988865

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.32  E-value=0.007  Score=62.77  Aligned_cols=203  Identities=13%  Similarity=0.066  Sum_probs=125.2

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +.+..+-+.-.+..+++.  +++...     -+++.|..-|.+   .++.+...|+++|+++..     +.+.+ .-++.
T Consensus        62 ~~~~Krl~yl~l~~~~~~--~~e~~~-----l~~n~l~kdL~~---~n~~ir~~AL~~L~~i~~-----~~~~~-~l~~~  125 (591)
T 2vgl_B           62 NLELKKLVYLYLMNYAKS--QPDMAI-----MAVNSFVKDCED---PNPLIRALAVRTMGCIRV-----DKITE-YLCEP  125 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHH--SHHHHH-----TTHHHHGGGSSS---SSHHHHHHHHHHHHTCCS-----GGGHH-HHHHH
T ss_pred             CHHHHHHHHHHHHHHccc--CchHHH-----HHHHHHHHHcCC---CCHHHHHHHHHHHHcCCh-----HHHHH-HHHHH
Confidence            445444444555555553  344221     134455555554   578889999999998742     22221 12456


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a  301 (385)
                      +.++|.+  .++.|.+.|++++..++..+++.   +.+.+.++.|..+|...+..|+.+|+++|..++.++.....+   
T Consensus       126 l~~~L~d--~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~---  197 (591)
T 2vgl_B          126 LRKCLKD--EDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL---  197 (591)
T ss_dssp             HHHHSSC--SCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC---
T ss_pred             HHHHcCC--CChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch---
Confidence            7788874  58999999999999998766542   334578899999998777789999999999998655321000   


Q ss_pred             hhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHH
Q 016639          302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS  380 (385)
Q Consensus       302 ~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~  380 (385)
                            -...+.+..|+..|... ++-++..++.+|..++..++ ....     .++.+..++    .+.|..|.-+|+.
T Consensus       198 ------~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l----~~~~~~V~~ea~~  261 (591)
T 2vgl_B          198 ------DLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRL----SHANSAVVLSAVK  261 (591)
T ss_dssp             ------CCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCS----CSSTTHHHHHHHH
T ss_pred             ------hccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHH----cCCChHHHHHHHH
Confidence                  00123456777777664 66566677778877775432 2111     233333333    3444477777777


Q ss_pred             HHhc
Q 016639          381 LLSK  384 (385)
Q Consensus       381 ~Lr~  384 (385)
                      +|..
T Consensus       262 ~i~~  265 (591)
T 2vgl_B          262 VLMK  265 (591)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.27  E-value=0.0068  Score=61.27  Aligned_cols=174  Identities=5%  Similarity=-0.067  Sum_probs=111.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +.+....++..|..+++.  .+..   ......+|.|..++..   .+..+...|+.+|+.+....+  +.......++.
T Consensus       177 ~~~VR~~a~~~l~~l~~~--~~~~---~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~  246 (588)
T 1b3u_A          177 TPMVRRAAASKLGEFAKV--LELD---NVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLP--QEDLEALVMPT  246 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHT--SCHH---HHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSC--HHHHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHHHHH--hcHH---hHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence            566677778888887764  2221   1124567888888865   467888888888888765432  22233345677


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC--Cccchhhh
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP--DDDQVVAS  299 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~--Dd~rv~~g  299 (385)
                      +.+++.+  ++..+...++.++..++.....   .......++.++.+|+..+..+++.|+++|..++..  ++.+.   
T Consensus       247 l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---  318 (588)
T 1b3u_A          247 LRQAAED--KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE---  318 (588)
T ss_dssp             HHHHHTC--SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH---
T ss_pred             HHHHccC--CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh---
Confidence            7777764  4678888999998887643211   123345789999999887778888899999888632  22110   


Q ss_pred             hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA  341 (385)
Q Consensus       300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La  341 (385)
                             ...-...++.+..+++.. +..++..++.+|..++
T Consensus       319 -------~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          319 -------NVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS  352 (588)
T ss_dssp             -------HHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred             -------hHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence                   011123456666666553 5667777777776665

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.24  E-value=0.021  Score=55.16  Aligned_cols=178  Identities=10%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~  220 (385)
                      +.++++.+|-.|+.....  +..-..-++..||+..|+.....   ++...+..+|++|..|....+-...++ ....|.
T Consensus       131 ~~~~lr~aLfsLk~~~q~--D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~  205 (339)
T 3dad_A          131 SGPELRRSLFSLKQIFQE--DKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ  205 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHT--CTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhc--chHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence            568899999999995554  78888888999999999999977   488899999999999987644444555 445677


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----------ChHHHHHHHc---cCChHHHHHHHHHHHH
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK----------IDELILEILS---RQRNDSIQSLYDAIRV  287 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G----------~i~~Lv~lL~---~~~~~v~k~A~~aL~~  287 (385)
                      .++.++.+  .+..|.+.++..|...+...|.|-..+.++=          -.+.|+.+|+   ..+.+++.+|...|=.
T Consensus       206 ~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~  283 (339)
T 3dad_A          206 WLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK  283 (339)
T ss_dssp             HHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            77777773  6789999999999999888887776665432          2789999997   4555777777665554


Q ss_pred             hc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHH
Q 016639          288 LL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLI  331 (385)
Q Consensus       288 Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~  331 (385)
                      +-  .+|+.+.     ++-...+-+.|.=..+...|+... ++++++
T Consensus       284 lL~~apd~d~~-----~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          284 TLAALPDQDSF-----YDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHCSSHHHH-----HHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHhcCCChhHH-----HHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            42  2221100     122223334555566777777764 555543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.18  E-value=0.0085  Score=60.55  Aligned_cols=182  Identities=11%  Similarity=0.034  Sum_probs=114.8

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      ..+|.|+.++..   .+..+...++.+|..+...-.  ..+....-++.++.+|.+  ++..+...++.++..++.....
T Consensus       402 ~~lp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~  474 (588)
T 1b3u_A          402 SLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVD--HVYAIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCc
Confidence            356777776654   467777788888887764211  122222335667777764  4678888999999887654322


Q ss_pred             hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~  332 (385)
                         .+....++|.|+.++...+..++..+++++..++..      +|.      .......++.|+.+++.. ++.++..
T Consensus       475 ---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------~~~------~~~~~~~~~~l~~~l~d~-~~~Vr~~  538 (588)
T 1b3u_A          475 ---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CGQ------DITTKHMLPTVLRMAGDP-VANVRFN  538 (588)
T ss_dssp             ---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HHH------HHHHHHTHHHHHHGGGCS-CHHHHHH
T ss_pred             ---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------cCH------HHHHHHHHHHHHhhCCCC-CchHHHH
Confidence               122346788888877766667888899999988631      111      011234678888888763 6789999


Q ss_pred             HHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          333 ASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       333 a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.+|..++..  .++    .....++.|..+    ..+.+.+|-..++.+|..|
T Consensus       539 a~~~l~~l~~~~~~~~----~~~~~~p~l~~l----~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          539 VAKSLQKIGPILDNST----LQSEVKPILEKL----TQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHGGGSCHHH----HHHHHHHHHHHH----TTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhchhh----hHHHHHHHHHHH----cCCCchhHHHHHHHHHHHh
Confidence            99999999753  222    111223334343    2345568888888887654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.93  E-value=0.17  Score=52.69  Aligned_cols=169  Identities=8%  Similarity=-0.033  Sum_probs=113.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +.+.-+-.--.+...++.  +++-...     ++..|..-|.+   .++.+...|+++|+++..     +++. ...++.
T Consensus        83 ~~~~Krl~Yl~~~~~~~~--~~e~~~l-----~in~l~kDL~~---~n~~vr~lAL~~L~~i~~-----~~~~-~~l~~~  146 (618)
T 1w63_A           83 KFTDKRIGYLGAMLLLDE--RQDVHLL-----MTNCIKNDLNH---STQFVQGLALCTLGCMGS-----SEMC-RDLAGE  146 (618)
T ss_dssp             SHHHHHHHHHHHHHHCCC--CHHHHHH-----HHHHHHHHHSC---SSSHHHHHHHHHHHHHCC-----HHHH-HHHHHH
T ss_pred             chHHHHHHHHHHHHHhCC--CcHHHHH-----HHHHHHHhcCC---CCHhHHHHHHHHHHhcCC-----HHHH-HHHHHH
Confidence            344333333356666664  4442222     36667777766   477889999999999864     2333 244677


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV  301 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a  301 (385)
                      +.++|++  .++-|.+.|+.++.++..++++..     .+.++.+..+|...+..|+..|+++|..++..+.        
T Consensus       147 l~~~L~~--~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~--------  211 (618)
T 1w63_A          147 VEKLLKT--SNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP--------  211 (618)
T ss_dssp             HHHHHHS--CCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH--------
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh--------
Confidence            7888875  578999999999999987776532     2678888888887777899999999999975331        


Q ss_pred             hhHHHHHHhcCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhhcCh
Q 016639          302 YGYARRFAKIGIARALVHSLHA--------------GLSSPSLISASIALKAVAVND  344 (385)
Q Consensus       302 ~~~a~~I~e~Ggi~~Lv~lL~~--------------~~~~~v~~~a~~aL~~La~~~  344 (385)
                       +....+  ...++.++.+|+.              ..++-.+..+..+|..++..+
T Consensus       212 -~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~  265 (618)
T 1w63_A          212 -DMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND  265 (618)
T ss_dssp             -HHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred             -HHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence             111112  2567888888764              125666677778888887653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.91  E-value=0.049  Score=52.65  Aligned_cols=191  Identities=10%  Similarity=0.067  Sum_probs=130.1

Q ss_pred             HHHHHHhcccCCcHhHHHHHHHHHHHHh-cCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 016639          177 LVCSICYKMRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE  255 (385)
Q Consensus       177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~-~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~  255 (385)
                      .+++-|.+   .+.+.+..++..|..+. .+.+.-..|++.+|+..|+.+....  +.+.+..+++++..+. .+..-..
T Consensus       122 ~iiekL~~---~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM-~~v~Gm~  195 (339)
T 3dad_A          122 AILEKLYS---SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLM-LFVDGML  195 (339)
T ss_dssp             HHHHHHHH---CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHT-TSHHHHH
T ss_pred             HHHHHHhc---CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHH-hcccccc
Confidence            35555655   35667888899999844 4554468899999999999999764  7899999999999986 4666665


Q ss_pred             HHHh-CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc-C--cHHHHHHHHhcC--CCHHH
Q 016639          256 SYME-LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-G--IARALVHSLHAG--LSSPS  329 (385)
Q Consensus       256 ~iv~-~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~-G--gi~~Lv~lL~~~--~~~~v  329 (385)
                      .|+. ...|..|..++.+....|+|.|...|.+++..++...+  --...++..... |  -...|+..|+..  .|..+
T Consensus       196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~--lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el  273 (339)
T 3dad_A          196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP--LFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL  273 (339)
T ss_dssp             HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred             chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch--HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence            6663 45788888888876668999999999999865542111  011222222322 2  277899999732  37778


Q ss_pred             HHHHHHHHHHhh---cC----hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHH
Q 016639          330 LISASIALKAVA---VN----DEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (385)
Q Consensus       330 ~~~a~~aL~~La---~~----~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~  377 (385)
                      +.++...+-.+-   ..    .+++..+.+.|--..+...|..+..+.  ++.+|
T Consensus       274 q~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~--~l~~Q  326 (339)
T 3dad_A          274 LVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDV--DLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCH--HHHHH
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCH--HHHHH
Confidence            888776655552   21    256667777776667778787754443  55554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.81  E-value=0.00014  Score=60.18  Aligned_cols=119  Identities=13%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      ..++.|+.+|++   .++.+...|+++|+.+  +.         ..++.|+++|++  ++..+...++++|..+.  ++ 
T Consensus        12 ~~~~~l~~~L~~---~~~~vR~~A~~~L~~~--~~---------~~~~~L~~~L~d--~~~~vR~~A~~aL~~~~--~~-   72 (131)
T 1te4_A           12 SGLVPRGSHMAD---ENKWVRRDVSTALSRM--GD---------EAFEPLLESLSN--EDWRIRGAAAWIIGNFQ--DE-   72 (131)
T ss_dssp             ---------CCS---SCCCSSSSCCSSTTSC--SS---------TTHHHHHHGGGC--SCHHHHHHHHHHHGGGC--SH-
T ss_pred             ccHHHHHHHhcC---CCHHHHHHHHHHHHHh--Cc---------hHHHHHHHHHcC--CCHHHHHHHHHHHHhcC--CH-
Confidence            456777787765   3566666666666643  21         136888888885  57889999999988653  22 


Q ss_pred             hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~  332 (385)
                              ..++.|+.+|...+..|+..|+++|..+..                    ..+++.|+.+|+. .++.+...
T Consensus        73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------------------~~a~~~L~~~l~d-~~~~vr~~  123 (131)
T 1te4_A           73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------------ERVRAAMEKLAET-GTGFARKV  123 (131)
T ss_dssp             --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------------HHHHHHHHHHTTS-CCTHHHHH
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHHH
Confidence                    247889999988777899999999987741                    1247888888865 36778888


Q ss_pred             HHHHHHH
Q 016639          333 ASIALKA  339 (385)
Q Consensus       333 a~~aL~~  339 (385)
                      ++.+|.+
T Consensus       124 A~~aL~~  130 (131)
T 1te4_A          124 AVNYLET  130 (131)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHh
Confidence            8888764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.61  E-value=0.016  Score=56.65  Aligned_cols=183  Identities=9%  Similarity=-0.000  Sum_probs=112.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-------------
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-------------  208 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~-------------  208 (385)
                      +.+....+++.|..++..  .+..-.-....+.++.++..++.   .+..+...|+..+..++....             
T Consensus       230 ~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  304 (462)
T 1ibr_B          230 DTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG  304 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred             CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence            556666778888877764  32210000111567777777765   477888889988888765320             


Q ss_pred             -----cchhHhh---CCCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639          209 -----STETFRT---GGGPKLLVNILIDG-----NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN  275 (385)
Q Consensus       209 -----~~~~i~~---~ggi~~Lv~lL~~~-----~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~  275 (385)
                           ....++.   ...+|.+++.|...     .++..+...++.+|..++....+   .+. ..+++.+...|.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDW  380 (462)
T ss_dssp             SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSH
T ss_pred             CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCCh
Confidence                 0011111   22345556666542     12335777888888877654432   222 2466777778877666


Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                      .++..|+.+|.+++.+-+... +       +... ...++.|+.+|+.. ++.++..+|++|.+++..
T Consensus       381 ~~r~aal~~l~~l~~~~~~~~-~-------~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPSQ-L-------KPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTTT-T-------CTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHH-H-------HHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            788889999999985432110 0       0011 45789999999874 788999999999999753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.54  E-value=0.02  Score=52.71  Aligned_cols=178  Identities=7%  Similarity=0.089  Sum_probs=128.9

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (385)
                      +.+..|+.+|..   .|..+...++-+|..++.+-+. .....=...++.+++++++  ++..+.-.|++++..+..+.+
T Consensus        33 ~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~--~dEkval~A~r~L~~LLe~vp  107 (265)
T 3b2a_A           33 RALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ--ENEKVTIKALRALGYLVKDVP  107 (265)
T ss_dssp             HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHcCCC
Confidence            357778888865   5889999999999999876432 1222334678888888875  688999999999999998888


Q ss_pred             hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639          252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (385)
Q Consensus       252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~  331 (385)
                      --...+.+  ++..|++++.++++-...+|+..+..|-.-+..+                +.+..+.+++.+ .|..++.
T Consensus       108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl~S-kd~~vK~  168 (265)
T 3b2a_A          108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELVVS-PDLYTKV  168 (265)
T ss_dssp             BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHHTC-SSHHHHH
T ss_pred             CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHHhC-CChhHHH
Confidence            77777765  6789999999888777778999999884322222                246788999954 4888999


Q ss_pred             HHHHHHHHhhcCh---HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          332 SASIALKAVAVND---EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       332 ~a~~aL~~La~~~---e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      .++.+|.+++.+.   ++-..|.  .++.   ++++    +.|..+.+-++.+|-
T Consensus       169 agl~~L~eia~~S~D~~i~~~I~--~eI~---elL~----~eD~~l~e~aLd~Le  214 (265)
T 3b2a_A          169 AGFCLFLNMLNSSADSGHLTLIL--DEIP---SLLQ----NDNEFIVELALDVLE  214 (265)
T ss_dssp             HHHHHHHHHGGGCSSCCCGGGTT--TTHH---HHHT----CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCHHHHHHHH--HHHH---HHHc----CCCHHHHHHHHHHHH
Confidence            9999999998753   2333332  2222   3343    345578887777764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.41  E-value=0.12  Score=53.69  Aligned_cols=223  Identities=13%  Similarity=0.049  Sum_probs=119.6

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      ++..|..++.+.       +.+...-++..|..+...  +|.   .+  ....+.++.++..   .|..+...|+..|..
T Consensus       314 a~~~L~~~L~~~-------d~~vr~~aL~~L~~i~~~--~p~---~~--~~~~~~i~~~l~d---~d~~Ir~~alelL~~  376 (618)
T 1w63_A          314 AINILGRFLLNN-------DKNIRYVALTSLLKTVQT--DHN---AV--QRHRSTIVDCLKD---LDVSIKRRAMELSFA  376 (618)
T ss_dssp             HHHHHHHHHTCS-------STTTHHHHHHHHHHHHHH--HHH---HH--GGGHHHHHHGGGS---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-------CCchHHHHHHHHHHHHhh--CHH---HH--HHHHHHHHHHccC---CChhHHHHHHHHHHH
Confidence            444555554432       334444555555555442  221   11  1234455666654   578888888998888


Q ss_pred             HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-------
Q 016639          203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------  275 (385)
Q Consensus       203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-------  275 (385)
                      +++.... +.+     ++.+...+..  .+.++...++.+|..+|.+...+...+     ++.|+++|+....       
T Consensus       377 l~~~~nv-~~i-----v~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~~~v~~~~~  443 (618)
T 1w63_A          377 LVNGNNI-RGM-----MKELLYFLDS--CEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAGSYVRDDAV  443 (618)
T ss_dssp             HCCSSST-HHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTGGGSCSSHH
T ss_pred             HcccccH-HHH-----HHHHHHHHHh--CCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhccchhHHHHH
Confidence            8764311 222     2556666654  578889999999999888765444433     2344444443321       


Q ss_pred             -----------HHHHHHHHHHHHhcCCCccchhhhhc-----hhHHHHHHh-------------cCcHHHHHHHHhcCC-
Q 016639          276 -----------DSIQSLYDAIRVLLTPDDDQVVASQV-----YGYARRFAK-------------IGIARALVHSLHAGL-  325 (385)
Q Consensus       276 -----------~v~k~A~~aL~~Lt~~Dd~rv~~g~a-----~~~a~~I~e-------------~Ggi~~Lv~lL~~~~-  325 (385)
                                 +.+..++..|..+..++....+..++     .+++..+..             ..+++.|..+++.+. 
T Consensus       444 ~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  523 (618)
T 1w63_A          444 PNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMS  523 (618)
T ss_dssp             HHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCC
Confidence                       11122232232222111000000010     122222221             013566666666544 


Q ss_pred             CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       326 ~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      ++.++..+..++..++.+.+-        ..+.+..++..+..+.|.+|...|+..++
T Consensus       524 ~~~vr~~~lta~~Kl~~~~~~--------~~~~l~~~L~~~~~~~d~evrdRA~~y~~  573 (618)
T 1w63_A          524 TSVTRGYALTAIMKLSTRFTC--------TVNRIKKVVSIYGSSIDVELQQRAVEYNA  573 (618)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSS--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCcc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            677888889999888876421        24455566666667777788888887654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.30  E-value=0.085  Score=55.98  Aligned_cols=218  Identities=11%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-------------
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-------------  208 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~-------------  208 (385)
                      +.+....+++.|..++..  .+..-.-......++.++..+..   .++.+...|+..+..++....             
T Consensus       230 ~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~  304 (876)
T 1qgr_A          230 DTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG  304 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence            445555677777777764  33321112223567777776654   467888888888887764310             


Q ss_pred             -----cchhHhh---CCCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639          209 -----STETFRT---GGGPKLLVNILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN  275 (385)
Q Consensus       209 -----~~~~i~~---~ggi~~Lv~lL~~~~-----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~  275 (385)
                           ....+..   ..-++.+++.|....     ++..+...+..++..++....+   .++ ..+++.+...|.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~  380 (876)
T 1qgr_A          305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDW  380 (876)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSH
T ss_pred             CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCCh
Confidence                 0000100   122455666665321     2345666777777766543221   122 1455666677776666


Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HH--HHHHHH
Q 016639          276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EI--CKSVAE  352 (385)
Q Consensus       276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~--c~~I~e  352 (385)
                      .++..|+++|..++..-.        .+...... ...++.|+..|... +..++..++++|.+++... +.  ..... 
T Consensus       381 ~~r~~a~~~l~~i~~~~~--------~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-  449 (876)
T 1qgr_A          381 RYRDAAVMAFGCILEGPE--------PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL-  449 (876)
T ss_dssp             HHHHHHHHHHHHTSSSSC--------HHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH-
T ss_pred             HHHHHHHHHHHHHHcCCC--------HHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH-
Confidence            788889999999985321        01111111 23688899998763 6778999999999997531 10  00000 


Q ss_pred             cCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       353 ~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ...++.++..|.+   .  ..+...++.+|.+
T Consensus       450 ~~~l~~l~~~l~~---~--~~v~~~a~~al~~  476 (876)
T 1qgr_A          450 APLLQCLIEGLSA---E--PRVASNVCWAFSS  476 (876)
T ss_dssp             HHHHHHHHHHTTS---C--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---C--HHHHHHHHHHHHH
Confidence            1234455555543   2  4677777877754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.29  E-value=0.0051  Score=50.58  Aligned_cols=88  Identities=7%  Similarity=0.048  Sum_probs=69.1

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      .++.|+.+|+.   .++.+...|+++|+.+..          ..+++.|+.+|++  ++..|...++++|..+.  ++  
T Consensus        43 ~~~~L~~~L~d---~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~~--~~--  103 (131)
T 1te4_A           43 AFEPLLESLSN---EDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQIG--GE--  103 (131)
T ss_dssp             THHHHHHGGGC---SCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHHC--SH--
T ss_pred             HHHHHHHHHcC---CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--cH--
Confidence            37899999986   588999999999998642          1247899999975  57889999999998763  22  


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRV  287 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~  287 (385)
                             .+++.|+.+|+..+..|+..|+++|..
T Consensus       104 -------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          104 -------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   357889999987776888888888754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.09  E-value=0.019  Score=56.07  Aligned_cols=159  Identities=4%  Similarity=-0.000  Sum_probs=97.6

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (385)
                      +.+|.|++.+.+.. .+..+...|+.+|..++.....  -.... ...++.++.+|.+...+.++...+++++.++...-
T Consensus       128 ~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          128 ELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             THHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            57888888887620 0677888899999998753211  01111 13567777888764336889999999998865322


Q ss_pred             hhhHH-HHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          251 EVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       251 e~nr~-~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      +.+-. .....-+++.|...+.....++++.+|.+|..+........  .   .    ....+.++.++..++.. ++.+
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~---~----~~~~~l~~~~~~~~~~~-~~~v  275 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM--E---T----YMGPALFAITIEAMKSD-IDEV  275 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC--T---T----TTTTTHHHHHHHHHHCS-SHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--H---H----HHHHHHHHHHHHHHcCC-chHH
Confidence            22111 00111135666666666666888899999999874221110  0   0    11115567777777663 6778


Q ss_pred             HHHHHHHHHHhhcC
Q 016639          330 LISASIALKAVAVN  343 (385)
Q Consensus       330 ~~~a~~aL~~La~~  343 (385)
                      ...++..+..++..
T Consensus       276 ~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          276 ALQGIEFWSNVCDE  289 (462)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=95.88  E-value=0.06  Score=48.61  Aligned_cols=176  Identities=13%  Similarity=0.134  Sum_probs=110.8

Q ss_pred             HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILI-DGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~-~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      .+.+.+.+   .+......|+..|..++.+.+.  ...+  ..-++.|..+|. +  .+..+...++.++..++.+-...
T Consensus        19 ~l~~~l~s---~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~~~   91 (242)
T 2qk2_A           19 DFYDKLEE---KKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLAKR   91 (242)
T ss_dssp             THHHHHTC---SSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHhhhcc---CCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHhhh
Confidence            36666655   4777888888888888876321  0111  122455566663 4  57889999999999988432211


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA  333 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a  333 (385)
                      -... -..+++.|+..|...+..++..|+.+|.++...-.              +  ...++.|...|+. .++.++..+
T Consensus        92 ~~~~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------------~--~~ll~~l~~~l~~-~~~~vr~~~  153 (242)
T 2qk2_A           92 FSNY-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--------------L--EAQQESIVESLSN-KNPSVKSET  153 (242)
T ss_dssp             GHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------------H--HHHHHHHHHHTTC-SCHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------------H--HHHHHHHHHHHcC-CChHHHHHH
Confidence            1111 13478899999988887888889999998864211              1  1246778888875 377899999


Q ss_pred             HHHHHHhhcC--hH--HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          334 SIALKAVAVN--DE--ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       334 ~~aL~~La~~--~e--~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      +..|..+..+  ++  +...+-  --++.|+.++.+    .+.+|-+.|..+|.
T Consensus       154 l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D----~~~~VR~~A~~~l~  201 (242)
T 2qk2_A          154 ALFIARALTRTQPTALNKKLLK--LLTTSLVKTLNE----PDPTVRDSSAEALG  201 (242)
T ss_dssp             HHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHTS----SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhcC----CChHHHHHHHHHHH
Confidence            9999996543  22  122221  345666666643    34456666665553

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.82  E-value=0.21  Score=52.90  Aligned_cols=216  Identities=11%  Similarity=0.051  Sum_probs=123.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhh---HHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhh-
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVN---AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRT-  215 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~---r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~-  215 (385)
                      +......+++.|..++..  -..+   ...+  ...+|.|+..+..    ++.+...|+++|.+++.+-..  ...+.. 
T Consensus       424 ~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~--~~~l~~l~~~l~~----~~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          424 SLQVKETTAWCIGRIADS--VAESIDPQQHL--PGVVQACLIGLQD----HPKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HGGGSCTTTTH--HHHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             cHHHHHHHHHHHHHHHHH--hhhhcCCHHHH--HHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            555556677777777652  1110   0011  1346777777754    478899999999998764210  011110 


Q ss_pred             -CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC---------------ChHHHH
Q 016639          216 -GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ---------------RNDSIQ  279 (385)
Q Consensus       216 -~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~---------------~~~v~k  279 (385)
                       ..-++.++.+|.+...+..+...++.++..++.........++. ..++.++..|...               ...++.
T Consensus       496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~  574 (861)
T 2bpt_A          496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS  574 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence             12356677777753334678888888888877655443333332 4677788877642               114566


Q ss_pred             HHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcC--hHHHHHHHHcCcH
Q 016639          280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS-PSLISASIALKAVAVN--DEICKSVAENGGI  356 (385)
Q Consensus       280 ~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~-~v~~~a~~aL~~La~~--~e~c~~I~e~GGl  356 (385)
                      .++.+|..++..-....     ..+.     ...++.++..++.. +. .+...++.++..++..  .++..-+..  -+
T Consensus       575 ~~~~~l~~l~~~~~~~~-----~~~~-----~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~  641 (861)
T 2bpt_A          575 NILTVLAAVIRKSPSSV-----EPVA-----DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLET--FS  641 (861)
T ss_dssp             HHHHHHHHHHHHCGGGT-----GGGH-----HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HH
T ss_pred             HHHHHHHHHHHHhhhhh-----HHHH-----HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HH
Confidence            78888888863211100     0111     13567788888775 33 5778888888888643  233322222  45


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          357 DALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      +.++..+.+  +..  .+...++.++.
T Consensus       642 ~~l~~~l~~--~~~--~vr~~a~~~l~  664 (861)
T 2bpt_A          642 PYLLKALNQ--VDS--PVSITAVGFIA  664 (861)
T ss_dssp             HHHHHHHHC--TTS--HHHHHHHHHHH
T ss_pred             HHHHHHhcc--ccH--HHHHHHHHHHH
Confidence            666677742  222  46666666553

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=95.71  E-value=0.38  Score=44.35  Aligned_cols=186  Identities=16%  Similarity=0.120  Sum_probs=121.7

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      .+.-|.+++...       |......+|..|.++.+..++.- +....+ ..+|.++.++++   .|..+...|+++|..
T Consensus        34 ~l~~L~~LL~dk-------D~~vk~raL~~LeellK~~~~~l-~~~~~e-~~Ld~iI~llk~---~dEkval~A~r~L~~  101 (265)
T 3b2a_A           34 ALFLILELAGED-------DETTRLRAFVALGEILKRADSDL-RMMVLE-RHLDVFINALSQ---ENEKVTIKALRALGY  101 (265)
T ss_dssp             HHHHHHHHTTSS-------CHHHHHHHHHHHHHHHHHSCHHH-HHHHHH-HHHHHHHHTCCS---TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-------chHHHHHHHHHHHHHHHhccccc-cHHHHH-HHHHHHHHHHhc---cchhHHHHHHHHHHH
Confidence            566677777665       78889999999999998511222 333333 469999999977   589999999999999


Q ss_pred             HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639          203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      |+.|.+.. .++..  .+..+..++++  .++-+...++-.+..+-. -...      -+++..|..+|.+.+..++..|
T Consensus       102 LLe~vpL~~~~y~K--l~~aL~dlik~--~~~il~~eaae~Lgklkv-~~~~------~~V~~~l~sLl~Skd~~vK~ag  170 (265)
T 3b2a_A          102 LVKDVPMGSKTFLK--AAKTLVSLLES--PDDMMRIETIDVLSKLQP-LEDS------KLVRTYINELVVSPDLYTKVAG  170 (265)
T ss_dssp             HHTTCCBCHHHHHH--HHHHHHHHTTS--CCHHHHHHHHHHHHHCCB-SCCC------HHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHcCCCCCHHHHHH--HHHHHHHHhcC--CCchHHHHHHHHhCcCCc-ccch------HHHHHHHHHHHhCCChhHHHHH
Confidence            99987653 33322  23455555553  455566666666665421 1111      1366788999977776788888


Q ss_pred             HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 016639          282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND  344 (385)
Q Consensus       282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~  344 (385)
                      ..++.+++.-.+..       +    +. .+++.-+-++|++. |+.+++-++.+|..+..++
T Consensus       171 l~~L~eia~~S~D~-------~----i~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          171 FCLFLNMLNSSADS-------G----HL-TLILDEIPSLLQND-NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HHHHHHHGGGCSSC-------C----CG-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhhcccCCH-------H----HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc
Confidence            98999987422111       1    12 12334455556664 7778888888888887663

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.68  E-value=0.41  Score=50.59  Aligned_cols=184  Identities=12%  Similarity=0.076  Sum_probs=106.3

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--------------chhHhh---CCCcHHHHHHHhcCC-----C
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--------------TETFRT---GGGPKLLVNILIDGN-----E  231 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--------------~~~i~~---~ggi~~Lv~lL~~~~-----~  231 (385)
                      .++.++..+..   .+..+...|+..+..++.....              .+.+..   ...++.++..|+...     +
T Consensus       267 l~~~~~~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~  343 (861)
T 2bpt_A          267 LYALTIATMKS---PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDD  343 (861)
T ss_dssp             HHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCC
T ss_pred             HHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            34444444443   4678888888888887653100              000111   234566666676422     2


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI  311 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~  311 (385)
                      +..+...++.+|..++....+   .++ ..+++.+...|.+.+..+++.|+++|.+++..-.        .+......+ 
T Consensus       344 ~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--------~~~~~~~l~-  410 (861)
T 2bpt_A          344 DWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--------KVQRTYYVH-  410 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--------HHHHHHHHH-
T ss_pred             cCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--------HHHHHHHHH-
Confidence            235777788888776643221   111 1345566666766666788889999999984321        011111221 


Q ss_pred             CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          312 GIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       312 Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ..++.|+..+... ++.++..++++|.+++..       .++-..     .++.++..+.+   .  ..+...+|.+|.+
T Consensus       411 ~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-----~l~~l~~~l~~---~--~~v~~~a~~al~~  479 (861)
T 2bpt_A          411 QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLPG-----VVQACLIGLQD---H--PKVATNCSWTIIN  479 (861)
T ss_dssp             HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH-----HHHHHHHHHTS---C--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH-----HHHHHHHHhcc---C--hHHHHHHHHHHHH
Confidence            3678888888663 777888999999988743       112222     24556666643   2  3677888877754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=95.53  E-value=0.42  Score=50.57  Aligned_cols=143  Identities=7%  Similarity=-0.034  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi  219 (385)
                      +......++..|..+|.. -.++. ..-.-...++.|+..+.... .+..+...|+++|+.++..-..  ........-+
T Consensus       143 ~~~~r~~al~~l~~l~~~-~~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il  219 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQD-IDPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFIM  219 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh-cCHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            445666778888888763 01211 00001234555566665420 1467888899999987643211  0000001124


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      +.+.+.+.  .++.++...++.++..++......-...+...+++.++..+......+...++.++..++
T Consensus       220 ~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~  287 (876)
T 1qgr_A          220 QVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            44444443  356788889999999887655544334444467888888887666677777776666664

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.25  E-value=0.81  Score=46.20  Aligned_cols=199  Identities=13%  Similarity=0.087  Sum_probs=114.3

Q ss_pred             HHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc---cc-hhHhhCCCcHHHHHHHhc--CCCCHHHHHHHHH
Q 016639          168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---ST-ETFRTGGGPKLLVNILID--GNEDPEILNSGFA  241 (385)
Q Consensus       168 ~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~---~~-~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~  241 (385)
                      +.....++..++.+|+..  ...++....|.-++-|+..++   .+ ..+.+......  .++..  +.++.-.+-.++.
T Consensus        72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~--~l~~~~~~~dd~~~ll~a~~  147 (480)
T 1ho8_A           72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE--QLFDVSLKGDFQTVLISGFN  147 (480)
T ss_dssp             --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH--HHHHHCSCSSHHHHHHHHHH
T ss_pred             hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch--HHHHHHhcccchHHHHHHHH
Confidence            334445788899999975  456677777777777777654   22 23333322211  22221  2333334455665


Q ss_pred             HHHHHhcCChhhHHHHHhCCChH--HHHHHHccCC-hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcC--cHHH
Q 016639          242 VVAASATGNEVVKESYMELKIDE--LILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA  316 (385)
Q Consensus       242 ~L~~~~~~~e~nr~~iv~~G~i~--~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~G--gi~~  316 (385)
                      ++..++.....+...+  .+.+.  .++..|++.. .+.+--++.+|..|...+..|..          +.+.+  .+++
T Consensus       148 l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~----------f~~~~~~~~~~  215 (480)
T 1ho8_A          148 VVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDV----------IWLHEKKFMPT  215 (480)
T ss_dssp             HHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHH----------HHTTHHHHHHH
T ss_pred             HHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHH----------HHHcccchhHH
Confidence            5554432111111111  11122  4556666532 23444477778888776666653          44432  3667


Q ss_pred             HHHHHhcC-------------C---CHHHHHHHHHHHHHhhcChHHHHHHHHcCcH--HHHHHHHHhcCCcCcHHHHHHH
Q 016639          317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC  378 (385)
Q Consensus       317 Lv~lL~~~-------------~---~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl--~~Lv~ll~~~~~~~~~~v~k~a  378 (385)
                      ++..++..             +   .-.++=+++..++-|+..++++..+...+..  ..|+++++...   -+.|.|-+
T Consensus       216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~---KEKvvRv~  292 (480)
T 1ho8_A          216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI---KEKVSRLC  292 (480)
T ss_dssp             HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred             HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc---cchhHHHH
Confidence            76555431             1   1123457788899999999999999887744  45677788743   34899999


Q ss_pred             HHHHhcC
Q 016639          379 CSLLSKV  385 (385)
Q Consensus       379 ~~~Lr~l  385 (385)
                      ++.||||
T Consensus       293 la~l~Nl  299 (480)
T 1ho8_A          293 ISIILQC  299 (480)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999996

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.17  E-value=2.2  Score=46.77  Aligned_cols=163  Identities=13%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      ++..|+..+...  .+..+...+.-+|+.+.-|.+        .+++.++++|... .++-+...++.++.-++.|..++
T Consensus       508 ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          508 AIHDMFTYSQET--QHGNITRGLAVGLALINYGRQ--------ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence            356677766543  355677777778887766653        4567888888753 45666666666665555554432


Q ss_pred             HHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639          254 KESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS  332 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~  332 (385)
                       .      +|+.|++.+.++ ++.+++.|..+|..+..+++.                  .++.+++.|....++.++..
T Consensus       577 -~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------------~v~rlv~~L~~~~d~~VR~g  631 (963)
T 4ady_A          577 -S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------------TVPRIVQLLSKSHNAHVRCG  631 (963)
T ss_dssp             -H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------------SHHHHTTTGGGCSCHHHHHH
T ss_pred             -H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------------HHHHHHHHHHhcCCHHHHHH
Confidence             2      455667766655 447777788777776654431                  24566666655447888888


Q ss_pred             HHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639          333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (385)
Q Consensus       333 a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L  382 (385)
                      ++.+|..++..+..-.      .++.|..++.    +.+..|.+.|..+|
T Consensus       632 AalALGli~aGn~~~~------aid~L~~L~~----D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          632 TAFALGIACAGKGLQS------AIDVLDPLTK----DPVDFVRQAAMIAL  671 (963)
T ss_dssp             HHHHHHHHTSSSCCHH------HHHHHHHHHT----CSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCcHH------HHHHHHHHcc----CCCHHHHHHHHHHH
Confidence            8888888876543221      1233333332    23346666665544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=95.13  E-value=0.49  Score=42.41  Aligned_cols=144  Identities=13%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             HHHHHHHHhh-cCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          123 SLERLKQLDL-NSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       123 al~~L~~~l~-~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .+..|+..+. ..       +......++..|..+++.   ......-.-...+|.|+..+..   ....+...|..+|.
T Consensus        57 i~~~L~~~l~kd~-------~~~V~~~a~~~l~~la~~---l~~~~~~~~~~ilp~ll~~l~d---~~~~vr~~a~~aL~  123 (242)
T 2qk2_A           57 LVSALKKVITKDS-------NVVLVAMAGKCLALLAKG---LAKRFSNYASACVPSLLEKFKE---KKPNVVTALREAID  123 (242)
T ss_dssp             HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHH---HGGGGHHHHHHHHHHHHHGGGC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence            3555566553 33       677788899999999874   2211111112357777777765   46788888999998


Q ss_pred             HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhCCChHHHHHHHccCChHHH
Q 016639          202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV---VKESYMELKIDELILEILSRQRNDSI  278 (385)
Q Consensus       202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~---nr~~iv~~G~i~~Lv~lL~~~~~~v~  278 (385)
                      ++...... +     .-++.+...|++  .+..+...++.+|..+...+..   ....+  ...+|.|+.+|.....+++
T Consensus       124 ~~~~~~~~-~-----~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR  193 (242)
T 2qk2_A          124 AIYASTSL-E-----AQQESIVESLSN--KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVR  193 (242)
T ss_dssp             HHHTTSCH-H-----HHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHcCCH-H-----HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHH
Confidence            88654211 1     124556666664  4789999999999996655421   12222  2578999999987777888


Q ss_pred             HHHHHHHHHhc
Q 016639          279 QSLYDAIRVLL  289 (385)
Q Consensus       279 k~A~~aL~~Lt  289 (385)
                      ..|..+|..++
T Consensus       194 ~~A~~~l~~l~  204 (242)
T 2qk2_A          194 DSSAEALGTLI  204 (242)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88988888775

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.32  E-value=0.99  Score=40.99  Aligned_cols=177  Identities=15%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 016639          194 DSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME-LK  261 (385)
Q Consensus       194 ~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G  261 (385)
                      ...+..|..-+..++.  -+.| ..+|+..|+++|...         ..+...+..++++|+.++ .+..-...++. .+
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~   96 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE   96 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSS
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcH
Confidence            3344555544443333  2566 678999999998642         114567888999999876 44545566664 56


Q ss_pred             ChHHHHHHHccCChHHHHHHHHHHHHhcCCCc--c-chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (385)
Q Consensus       262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd--~-rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~  338 (385)
                      ++..|+..|.+....+.+.+...|..++.-.+  . ....-.+.++.+..-+..--.++++.|+...+.+.+ .+|..+-
T Consensus        97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~~~m~lI  175 (233)
T 2f31_A           97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLI  175 (233)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHH-HHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHH-HHHHHHH
Confidence            88899988987777788888888888875443  1 111123334433333334567788888654344443 3444444


Q ss_pred             Hhhc--------ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHH
Q 016639          339 AVAV--------NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI  377 (385)
Q Consensus       339 ~La~--------~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~  377 (385)
                      |..+        |-..+.++..+|-.+.+ +-|+..   ++.++..|
T Consensus       176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~---~~~~L~~Q  218 (233)
T 2f31_A          176 NALITPAEELDFRVHIRSELMRLGLHQVL-QELREI---ENEDMKVQ  218 (233)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHC---CCHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhcc---CCHHHHHH
Confidence            4332        23455677776555544 667763   33355554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=94.00  E-value=0.48  Score=52.89  Aligned_cols=209  Identities=12%  Similarity=0.054  Sum_probs=122.5

Q ss_pred             HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L  203 (385)
                      +..|...+.+.       +.+....|+..|....+.  +...-..-.....++.|+..|..   .+..+...|+.+|+.+
T Consensus         8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~--~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l   75 (1230)
T 1u6g_C            8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQK--DSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPL   75 (1230)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSS--SCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-------CHhHHHHHHHHHHHHHcc--cccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence            44455555443       778888888888887764  21100000112357778888764   5788999999999998


Q ss_pred             hcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhCCChHHHHHHHcc-CChH
Q 016639          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRND  276 (385)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n------r~~iv~~G~i~~Lv~lL~~-~~~~  276 (385)
                      ..+-..  ..+ ..-++.++..|.+  ++..+...++.+|..++..-...      .... -..++|.|+..+.. .+..
T Consensus        76 ~~~~~~--~~~-~~i~~~Ll~~l~d--~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~  149 (1230)
T 1u6g_C           76 VSKVKE--YQV-ETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVS  149 (1230)
T ss_dssp             HTTSCH--HHH-HHHHHHHHHHTTC--SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHH
T ss_pred             HHhCCH--HHH-HHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchH
Confidence            765321  111 1123445555543  45567777788887766432221      1111 23578999999984 5567


Q ss_pred             HHHHHHHHHHHhcC--CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC
Q 016639          277 SIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG  354 (385)
Q Consensus       277 v~k~A~~aL~~Lt~--~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G  354 (385)
                      ++..|+.+|..++.  ++...       .+   +  ...++.|+..|.. .++.++..++.+|..++...+.  .+. ..
T Consensus       150 ~~~~al~~l~~~~~~~~~~l~-------~~---~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~  213 (1230)
T 1u6g_C          150 VQLEALDIMADMLSRQGGLLV-------NF---H--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VD  213 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCT-------TT---H--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TT
T ss_pred             HHHHHHHHHHHHHHHhHhHHH-------HH---H--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HH
Confidence            88889999998863  11110       01   1  2245677777765 3677888999999988764211  111 12


Q ss_pred             cHHHHHHHHHhc
Q 016639          355 GIDALLRCIDDS  366 (385)
Q Consensus       355 Gl~~Lv~ll~~~  366 (385)
                      -++.+++.+.+.
T Consensus       214 ~l~~l~~~L~~~  225 (1230)
T 1u6g_C          214 LIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHhccC
Confidence            356666666653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=93.99  E-value=0.48  Score=43.38  Aligned_cols=176  Identities=7%  Similarity=0.076  Sum_probs=103.5

Q ss_pred             CcHhHHHHHHHHHHH-HhcCCccchhHhh-C----CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHH-HHHh
Q 016639          188 GSKRVLDSCLKTMAL-LVHDVQSTETFRT-G----GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VVKE-SYME  259 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~-L~~~~~~~~~i~~-~----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~-~iv~  259 (385)
                      .+..-...|+..|+. ++.|.   +.+.. .    .-++.|.+.|.. ..+..++..|+.+|..++.+-. ..-+ .+. 
T Consensus        28 ~~w~eRk~al~~L~~~~~~~~---~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-  102 (249)
T 2qk1_A           28 SKWKDRVEALEEFWDSVLSQT---KKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFSKDYV-  102 (249)
T ss_dssp             SSHHHHHHHHHHHHHHTGGGC---CCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHhcC---CccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcccccccHHHH-
Confidence            366777788888888 87653   23331 1    124455556632 2467888999999999874221 1101 111 


Q ss_pred             CCChHHHHHHHccCChHHHHHHHHHHHHhcCC-CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639          260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (385)
Q Consensus       260 ~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~-Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~  338 (385)
                      .-++|.|++.+......|+..+..+|.++... +.+-..     .+   +  ...++.|+..|++. ++.++..++.+|.
T Consensus       103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-----~~---l--~~ll~~l~~~l~~k-~~~vk~~al~~l~  171 (249)
T 2qk1_A          103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-----GR---N--EDMLKDILEHMKHK-TPQIRMECTQLFN  171 (249)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-----CT---T--HHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-----Cc---H--HHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            23688889998877777777777777777521 000000     00   0  12467888888764 7788889999998


Q ss_pred             HhhcChHH--HH--HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          339 AVAVNDEI--CK--SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       339 ~La~~~e~--c~--~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      .++....-  .+  .-..-.-++.|..+|.+    .+.+|-..|+.+|-
T Consensus       172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~  216 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFA  216 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Confidence            88754221  11  11112456677777754    34466666665553

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=93.95  E-value=1  Score=46.91  Aligned_cols=176  Identities=13%  Similarity=0.086  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-cccCCcHhHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTM  200 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-~~~~~d~~vl~~Al~aL  200 (385)
                      .++..|..++.+.       +.+..--+|..|..++..  ++.. ..+  ..-.+.++.+|+ .   .|..+...++..|
T Consensus       329 ~~~~~L~~~L~~~-------~~niry~aL~~l~~l~~~--~~~~-~~~--~~~~~~i~~~L~~d---~d~~Ir~~aL~lL  393 (621)
T 2vgl_A          329 RACNQLGQFLQHR-------ETNLRYLALESMCTLASS--EFSH-EAV--KTHIETVINALKTE---RDVSVRQRAVDLL  393 (621)
T ss_dssp             HHHHHHHHHSSCS-------CHHHHHHHHHHHHHHTTC--TTTH-HHH--HTTHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-------CcchHHHHHHHHHHHHhc--cCcH-HHH--HHHHHHHHHHhccC---CCHhHHHHHHHHH
Confidence            6788888887654       677777889999999886  4432 222  234677778887 4   5888999999999


Q ss_pred             HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      ..|++... -..+     +..|.+.|..  .+.+....+..+|..+|.+.......     .++.|+++|+.....+..+
T Consensus       394 ~~l~~~~N-v~~I-----v~eL~~yl~~--~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~e  460 (621)
T 2vgl_A          394 YAMCDRSN-AQQI-----VAEMLSYLET--ADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGDYVSEE  460 (621)
T ss_dssp             HHHCCHHH-HHHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGGGSCSH
T ss_pred             HHHcChhh-HHHH-----HHHHHHHHHh--cCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcccchHH
Confidence            99876421 0122     2234444443  46788888888888877554433332     4567888887654445556


Q ss_pred             HHHHHHHhc-CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Q 016639          281 LYDAIRVLL-TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAV  340 (385)
Q Consensus       281 A~~aL~~Lt-~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~L  340 (385)
                      +...++.+. .+++.|.          +     ++..|++.+.... ...++..++|.++..
T Consensus       461 v~~~l~~ii~~~~~~~~----------~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy  507 (621)
T 2vgl_A          461 VWYRVIQIVINRDDVQG----------Y-----AAKTVFEALQAPACHENLVKVGGYILGEF  507 (621)
T ss_dssp             HHHHHHHHHGGGCSCHH----------H-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCChhHHH----------H-----HHHHHHHHHcCccchHHHHHHHHHHhcch
Confidence            666677665 3334332          1     2456788887754 345666777887654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=93.45  E-value=1.5  Score=48.94  Aligned_cols=155  Identities=8%  Similarity=-0.004  Sum_probs=91.2

Q ss_pred             HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh--CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       176 p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      |.+...++.   .+..+...++.+|+.++.+..  ..+..  ..-++.++.+|.+......++..++..+..++..+...
T Consensus       437 ~~l~~~l~~---~~~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~  511 (1230)
T 1u6g_C          437 KALHKQMKE---KSVKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ  511 (1230)
T ss_dssp             HHHHHHTTC---SCHHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred             HHHHHHhcc---CCHHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH
Confidence            334444554   466777788899998876532  11111  12356667777664434578888888888876433222


Q ss_pred             -HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC--CCccchhhhhc-hhHHHHHHhcCcHHHHHHHHhcCC-CHH
Q 016639          254 -KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQV-YGYARRFAKIGIARALVHSLHAGL-SSP  328 (385)
Q Consensus       254 -r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~--~Dd~rv~~g~a-~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~  328 (385)
                       -..+. ..+++.|+..+......+..+++.++..++.  .+. ....+.. ..+.     ...++.++..|.... +..
T Consensus       512 ~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~~~~~~-----~~ll~~ll~~l~~~d~~~~  584 (1230)
T 1u6g_C          512 VFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL-DQPSSFDATPYI-----KDLFTCTIKRLKAADIDQE  584 (1230)
T ss_dssp             GGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS-SSCCCCCCHHHH-----HHHHHHHHHHHSCSSSCHH
T ss_pred             HHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc-ccccccchHHHH-----HHHHHHHHHHHhccCCCHH
Confidence             12233 4689999999988776777788888887761  110 0000000 0111     124677788885433 567


Q ss_pred             HHHHHHHHHHHhhc
Q 016639          329 SLISASIALKAVAV  342 (385)
Q Consensus       329 v~~~a~~aL~~La~  342 (385)
                      ++..+..++..|+.
T Consensus       585 vr~~a~~~lg~L~~  598 (1230)
T 1u6g_C          585 VKERAISCMGQIIC  598 (1230)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=93.22  E-value=0.59  Score=42.81  Aligned_cols=150  Identities=8%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhh-cCCCCCCcccHHHHHHHHHHHHHHhcCCCC-hhhH-HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639          122 QSLERLKQLDL-NSKDKFSDEDLNEMMGLFDKLIELCGGNEG-SVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLK  198 (385)
Q Consensus       122 ~al~~L~~~l~-~~~~~~~~~~~~~~~~al~~L~~lc~~~~~-~~~r-~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~  198 (385)
                      ..++.|+..+. ..       +......++.+|..++++ -. +.-. ..+.  -.+|.|++.++.   ....+...+..
T Consensus        60 ~~~~~L~~~l~~D~-------n~~v~~~A~~al~~la~~-l~~~~f~~~y~~--~llp~ll~~l~d---kk~~V~~aa~~  126 (249)
T 2qk1_A           60 NLLGIYGHIIQKDA-------NIQAVALAAQSVELICDK-LKTPGFSKDYVS--LVFTPLLDRTKE---KKPSVIEAIRK  126 (249)
T ss_dssp             HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHH-HCTTTSCHHHHH--HHHHHHHHGGGC---CCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHh-cccccccHHHHH--HHHHHHHHHHcC---CCHHHHHHHHH
Confidence            44666666663 32       666778888888888864 01 1111 1111  157788887765   35677777777


Q ss_pred             HHHHHhcCCccchhHhhC----CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHH---HHhCCChHHHHHHHc
Q 016639          199 TMALLVHDVQSTETFRTG----GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKES---YMELKIDELILEILS  271 (385)
Q Consensus       199 aLa~L~~~~~~~~~i~~~----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~---iv~~G~i~~Lv~lL~  271 (385)
                      +|-+++...+  + +...    .-++.|+..|++  .+..+...++.+|..++......-..   .+....+|.|..+|.
T Consensus       127 al~~i~~~~~--~-~~~~~~l~~ll~~l~~~l~~--k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~  201 (249)
T 2qk1_A          127 ALLTICKYYD--P-LASSGRNEDMLKDILEHMKH--KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN  201 (249)
T ss_dssp             HHHHHHHHSC--T-TCTTCTTHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHHHHcc--c-cccCCcHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc
Confidence            7777665321  1 1111    134455666654  47889999999999877544321012   222578899999998


Q ss_pred             cCChHHHHHHHHHHHHhc
Q 016639          272 RQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       272 ~~~~~v~k~A~~aL~~Lt  289 (385)
                      ....+|+..|+.+|..++
T Consensus       202 D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          202 DTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            777788888888888875

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=92.87  E-value=1  Score=46.81  Aligned_cols=103  Identities=11%  Similarity=0.083  Sum_probs=74.0

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV  253 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n  253 (385)
                      ++..|..+|.+   .++.+.--|+.+|..++...+. ..++ ..-...++..|+. .++..|...++..+..++  ++.|
T Consensus       330 ~~~~L~~~L~~---~~~niry~aL~~l~~l~~~~~~-~~~~-~~~~~~i~~~L~~-d~d~~Ir~~aL~lL~~l~--~~~N  401 (621)
T 2vgl_A          330 ACNQLGQFLQH---RETNLRYLALESMCTLASSEFS-HEAV-KTHIETVINALKT-ERDVSVRQRAVDLLYAMC--DRSN  401 (621)
T ss_dssp             HHHHHHHHSSC---SCHHHHHHHHHHHHHHTTCTTT-HHHH-HTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHC--CHHH
T ss_pred             HHHHHHHHhcC---CCcchHHHHHHHHHHHHhccCc-HHHH-HHHHHHHHHHhcc-CCCHhHHHHHHHHHHHHc--Chhh
Confidence            56778888765   4788888899999998765422 1233 2245667777772 257889999999999875  6778


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      ...|++     -|...+...+.+..++++.+|..++
T Consensus       402 v~~Iv~-----eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          402 AQQIVA-----EMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            766654     5667776666678888888888886

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.60  E-value=3.4  Score=40.44  Aligned_cols=167  Identities=14%  Similarity=0.145  Sum_probs=103.1

Q ss_pred             HHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCCh
Q 016639          196 CLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME-LKID  263 (385)
Q Consensus       196 Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G~i  263 (385)
                      .+..|..-+..++.  -+.|. .+|+..|+++|..-         ..+..++..++++|+.++ .+..-...++. ...+
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence            44455443333332  25665 78999999999631         224577888999999875 45555566664 5688


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHhcCCCc--c-chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd--~-rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      ..|+.+|.+....+.+.+.-.|..++.-.+  . ....=.+.++.+...+..-..++++.|+...+.+... +|..|-|.
T Consensus       165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~  243 (383)
T 3eg5_B          165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINA  243 (383)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHH
Confidence            999999988877788888888988886443  1 1111223455555334556788899887743444433 34444333


Q ss_pred             hc--------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          341 AV--------NDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       341 a~--------~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                      .+        |-..+.++..+|-.+.+ +-|+..
T Consensus       244 li~~~~dl~~R~~lR~ef~~~Gl~~il-~~lr~~  276 (383)
T 3eg5_B          244 LITPAEELDFRVHIRSELMRLGLHQVL-QELREI  276 (383)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHTTS
T ss_pred             HHcCCCCHHHHHHHHHHHHHCChHHHH-HHHhcC
Confidence            22        22455677776666655 557763

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.50  E-value=3.6  Score=40.25  Aligned_cols=177  Identities=11%  Similarity=0.030  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHH-HHHHcCcHHHHHHHHhccc--------CCcHhHHHHHHHHHHHHhcCCccchhH
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAA-VATKNGGVELVCSICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTETF  213 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~-~~~~~Gaip~Lv~lL~~~~--------~~d~~vl~~Al~aLa~L~~~~~~~~~i  213 (385)
                      .+.+.+.+..|+...+.  .+-.|. .+. ++|+..|+.+|.+..        ..+......++++|.++++...-...+
T Consensus        81 ~~kl~~~L~sL~v~Lrt--~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v  157 (383)
T 3eg5_B           81 DMHLLSCLESLRVSLTS--HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM  157 (383)
T ss_dssp             HHHHHHHHHHHHHHHHH--SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhh--CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            44566788888888887  555454 455 788999999986431        124466777888888887654333445


Q ss_pred             hh-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hCCChHHHHHHHccCChHHHHH
Q 016639          214 RT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VV-KESYM----------ELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       214 ~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~n-r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      ++ ..++..|...|.+  ....+...++-.|..+|.-.+ .+ -..|.          +..-..+++..|+.....-.+-
T Consensus       158 l~~~~~i~~l~~~L~s--~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~  235 (383)
T 3eg5_B          158 LETEEGILLLVRAMDP--AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV  235 (383)
T ss_dssp             HTCSSHHHHHHHTCCT--TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH
T ss_pred             HcChHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH
Confidence            54 4567878777753  577888889999998887654 33 22222          2245677888888754444455


Q ss_pred             HHHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          281 LYDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       281 A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      +|..|.|..  ..+|....     -|.+.=...-|+..+++-|+...++.+
T Consensus       236 ~~m~lIN~li~~~~dl~~R-----~~lR~ef~~~Gl~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          236 GCLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM  281 (383)
T ss_dssp             HHHHHHHHHHTTCCCHHHH-----HHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred             HHHHHHHHHHcCCCCHHHH-----HHHHHHHHHCChHHHHHHHhcCCChhH
Confidence            677777653  22332211     112221234566677777887655543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.24  E-value=7.7  Score=37.86  Aligned_cols=170  Identities=16%  Similarity=0.161  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh-CCCcHHHHH
Q 016639          146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVN  224 (385)
Q Consensus       146 ~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~-~ggi~~Lv~  224 (385)
                      +..++.-|-.+..   +.+...-+++.+|+..+.......   +.++....++.|-..++...  -.... ..-+|++++
T Consensus       260 vtR~FDLL~LLmH---dSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaks--L~~t~L~e~LPFi~~  331 (619)
T 3c2g_A          260 IIRTFDLLGLLLH---DSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKA--LAKTPLENILPFLLR  331 (619)
T ss_dssp             HHHHHHHHHHHCC---SHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGG--GGTSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhc---ccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHH--HhhccccccchHHHH
Confidence            3344555555554   355566789999999999998874   66777777877776544211  11112 345899999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-------HHHHHHHHHHHH----h-----
Q 016639          225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQSLYDAIRV----L-----  288 (385)
Q Consensus       225 lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-------~v~k~A~~aL~~----L-----  288 (385)
                      .++.+ ++.+++-.+-..|+++.+---..|..-+..|+|+.|-..+.....       ...+-||..++|    |     
T Consensus       332 ~i~~h-~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLM  410 (619)
T 3c2g_A          332 LIEIH-PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLM  410 (619)
T ss_dssp             HHHHC-CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HhccC-CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhee
Confidence            99875 578999999999999887666677777789999999998866543       233335555444    3     


Q ss_pred             ---cCCCccchhhhhch-hHHHHHHhcCcHHHHHHHHhcC
Q 016639          289 ---LTPDDDQVVASQVY-GYARRFAKIGIARALVHSLHAG  324 (385)
Q Consensus       289 ---t~~Dd~rv~~g~a~-~~a~~I~e~Ggi~~Lv~lL~~~  324 (385)
                         -+.+..|.+.|.-. .+.+.+.|...++.|+..|.-.
T Consensus       411 mWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          411 MWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             GGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             EEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence               25555666666532 3456666767777777777653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.14  E-value=5.1  Score=36.16  Aligned_cols=178  Identities=10%  Similarity=0.019  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC--------CcHhHHHHHHHHHHHHhcCCccchhHh
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC--------GSKRVLDSCLKTMALLVHDVQSTETFR  214 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~--------~d~~vl~~Al~aLa~L~~~~~~~~~i~  214 (385)
                      .+.+.+.+..|+...+. ...++-..+ ..||+..|+.+|.....        .+......++++|.++++.......++
T Consensus        15 ~~~~~~~L~~L~v~Lrt-~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl   92 (233)
T 2f31_A           15 DMHLLSCLESLRVSLNN-NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML   92 (233)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred             hHHHHHHHHHHhHhHhc-CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34566778888877776 234444455 57899999999875421        134567778888888876543334555


Q ss_pred             h-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh-h-HHHHH----------hCCChHHHHHHHccCChHHHHHH
Q 016639          215 T-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-V-KESYM----------ELKIDELILEILSRQRNDSIQSL  281 (385)
Q Consensus       215 ~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-n-r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~A  281 (385)
                      + .+++..+...|.  +.+..+...++-.|..+|.-.+. . -..|.          +..-..++++.|+.....-.+-+
T Consensus        93 ~~~~~i~~l~~~L~--s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~  170 (233)
T 2f31_A           93 ETEEGILLLVRAMD--PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG  170 (233)
T ss_dssp             TSSSHHHHHHTTCC--TTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH
T ss_pred             cCcHHHHHHHHHhC--CCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHH
Confidence            4 456777777764  45778888888888888875441 2 22222          22355667777775444344556


Q ss_pred             HHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          282 YDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       282 ~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      |-.+.|..  ..+|.+..     -|.|.=...-|+..+++-|+...++.+
T Consensus       171 ~m~lIN~li~~~~dl~~R-----~~lR~ef~~~Gl~~il~~l~~~~~~~L  215 (233)
T 2f31_A          171 CLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM  215 (233)
T ss_dssp             HHHHHHHHHTTCCCHHHH-----HHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHCCCCCHHHH-----HHHHHHHHHCChHHHHHHHhccCCHHH
Confidence            66666653  22332211     111111234577777788887655544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.13  E-value=11  Score=41.37  Aligned_cols=136  Identities=11%  Similarity=0.023  Sum_probs=89.2

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      .+++.|+++|...  .++.+...+.-+++--..|..+      ...|+.|+..+... .+..+...|.-.|..++.++++
T Consensus       541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e  611 (963)
T 4ady_A          541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT  611 (963)
T ss_dssp             GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence            4788999998864  4666766666666644444322      12345556665553 4567888888888888777652


Q ss_pred             hHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639          253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI  331 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~  331 (385)
                               .++.+++.|.. ++..+...|+.+|..+.......                .++..|..++.. .+..|..
T Consensus       612 ---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----------------~aid~L~~L~~D-~d~~Vrq  665 (963)
T 4ady_A          612 ---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----------------SAIDVLDPLTKD-PVDFVRQ  665 (963)
T ss_dssp             ---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----------------HHHHHHHHHHTC-SSHHHHH
T ss_pred             ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----------------HHHHHHHHHccC-CCHHHHH
Confidence                     45667776554 55578888999999886433211                125556665544 3778989


Q ss_pred             HHHHHHHHhhcC
Q 016639          332 SASIALKAVAVN  343 (385)
Q Consensus       332 ~a~~aL~~La~~  343 (385)
                      .+..+|+.+...
T Consensus       666 ~Ai~ALG~Ig~g  677 (963)
T 4ady_A          666 AAMIALSMILIQ  677 (963)
T ss_dssp             HHHHHHHHHSTT
T ss_pred             HHHHHHHHHhcC
Confidence            999999988653

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.50  E-value=5.3  Score=39.07  Aligned_cols=167  Identities=13%  Similarity=0.124  Sum_probs=99.4

Q ss_pred             HHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCCh
Q 016639          196 CLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYM-ELKID  263 (385)
Q Consensus       196 Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i  263 (385)
                      .+..|..-+..++.  -+.|. .+|+..|+.+|...         ..+...+..++++|+.++ .+..-...++ ..+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHH
Confidence            34444443443332  24553 68999999888642         114567888999999876 4444455565 45788


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHhcCCCcc---chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~---rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      ..|+..|.+....+.+.+.-.|..++.-.+.   ....=.+.++....-+..--.+||+.|+...+.+.. .+|..+-|.
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~a~m~lIN~  181 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINA  181 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHH-HHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHH-HHHHHHHHH
Confidence            8999999877777777888888888764431   111112334433333344567788888764444443 344444443


Q ss_pred             hc--------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          341 AV--------NDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       341 a~--------~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                      .+        |-..+.++..+|-.+.+ +-|+..
T Consensus       182 lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~  214 (386)
T 2bnx_A          182 LITPAEELDFRVHIRSELMRLGLHQVL-QELREI  214 (386)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTC
T ss_pred             HHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhcc
Confidence            32        23466777776655554 667763

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=91.27  E-value=6.7  Score=36.37  Aligned_cols=159  Identities=16%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHH---HHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHH
Q 016639          192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE---ILNSGFAVVAASATGNE-VVKESYMELKIDELIL  267 (385)
Q Consensus       192 vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~---v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv  267 (385)
                      -.++|+.-|-.++.+++.+..|+++.-+-.|.-+|+.......   +.-.++.+++.+...++ +...-+++..++|..+
T Consensus        72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            3566666666677777778999999999899999987554332   45567778887664333 2333445789999999


Q ss_pred             HHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHH
Q 016639          268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC  347 (385)
Q Consensus       268 ~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c  347 (385)
                      ..|..|+.-...-|.-.+..+-.+|.--.-+-++++.-..+.  .++..+|.-|....++.+++.+.+.-.+|+-+...|
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar  229 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR  229 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence            999999964444466666666665543322223334333333  356666776666557789999999999999888888


Q ss_pred             HHHHH
Q 016639          348 KSVAE  352 (385)
Q Consensus       348 ~~I~e  352 (385)
                      ..+-.
T Consensus       230 ~aL~~  234 (268)
T 2fv2_A          230 EALRQ  234 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=90.10  E-value=12  Score=36.06  Aligned_cols=102  Identities=7%  Similarity=0.004  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (385)
Q Consensus       175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (385)
                      +..|..=|.+   +++-+...|+++|+++....     +++ .-.+.+-+.|.+  .++-|.+.|+.+..++...+++. 
T Consensus       106 ~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~d--~~pyVRk~A~l~~~kL~~~~pe~-  173 (355)
T 3tjz_B          106 TSSLTKDMTG---KEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIVD--KVPSVSSSALVSSLHLLKCSFDV-  173 (355)
T ss_dssp             HHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTTCHHH-
T ss_pred             HHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcCC--CCHHHHHHHHHHHHHHhccCHHH-
Confidence            4455555555   47788999999999987642     111 122334555553  57889999999998888666543 


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 016639          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD  292 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~D  292 (385)
                         ++ +.++.+-+++...+.-|+-+|..+|..+...|
T Consensus       174 ---v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          174 ---VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             ---HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             ---HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence               33 68899999998877778878888888886544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.06  E-value=16  Score=35.59  Aligned_cols=177  Identities=11%  Similarity=0.036  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHH-HHHHcCcHHHHHHHHhcccC--------CcHhHHHHHHHHHHHHhcCCccchhH
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAA-VATKNGGVELVCSICYKMRC--------GSKRVLDSCLKTMALLVHDVQSTETF  213 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~-~~~~~Gaip~Lv~lL~~~~~--------~d~~vl~~Al~aLa~L~~~~~~~~~i  213 (385)
                      .+.+...+..|+...+.  .+-.|. -+. .+|+..|+..|.....        .+......++++|.++++.......+
T Consensus        19 ~~~~~~~L~~L~v~Lrt--~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v   95 (386)
T 2bnx_A           19 DMHLLSCLESLRVSLNN--NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM   95 (386)
T ss_dssp             HHHHHHHHHHHHHHHHH--SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred             hHHHHHHHHHHhHHHhc--CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34456677788777776  444444 454 6889999998865421        14466777888888887654333445


Q ss_pred             hh-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHH----------hCCChHHHHHHHccCChHHHHH
Q 016639          214 RT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV--KESYM----------ELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       214 ~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n--r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      +. ..++..+...|.  +.+..+...++-.|..+|.-.+.+  -..|.          +..-..+||+.|+.+...-.+-
T Consensus        96 l~~~~~i~~l~~sL~--s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~  173 (386)
T 2bnx_A           96 LETEEGILLLVRAMD--PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV  173 (386)
T ss_dssp             HHSSSHHHHHHHTCC--TTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHH
T ss_pred             HcCcHHHHHHHHHhC--CCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHH
Confidence            44 456777777775  456788888888888888755421  22221          2235667888887655444555


Q ss_pred             HHHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          281 LYDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       281 A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      +|-.+.|..  ..+|.+..     -|.|.=...-|+..+++-|+...++.+
T Consensus       174 a~m~lIN~lv~~~~dl~~R-----~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          174 GCLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHHHHTTCSCHHHH-----HHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHCCCCCHHHH-----HHHHHHHHHCChHHHHHHHhccCChhH
Confidence            777777753  22332211     112222234677788888888656544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=87.19  E-value=22  Score=38.24  Aligned_cols=213  Identities=11%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc--CCcHhHHHHHHHHHHHHhcCCccchhHhhCCCc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~--~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi  219 (385)
                      +......++..|..++.+  .....     ...++.++.++....  +.++.+...++++|+.++..-...+..+. ..+
T Consensus       477 ~w~~~eaal~~l~~iae~--~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl  548 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEH--FGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAI  548 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHH
T ss_pred             cHHHHHHHHHHHHHHHhh--cChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHH
Confidence            345677788888887765  22211     245666777654332  23678899999999988753211111111 123


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccC--ChHHHHHHHHHHHHhcC--CCc
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQ--RNDSIQSLYDAIRVLLT--PDD  293 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~--~Dd  293 (385)
                      +.++..| +    +.+...|++++..+|.   ..+..+.-  ...+..|..++.++  +...+..+..+|..++.  +.+
T Consensus       549 ~~l~~~l-~----~~v~~~A~~al~~l~~---~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~  620 (971)
T 2x1g_F          549 NLLVRGL-N----SSMSAQATLGLKELCR---DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE  620 (971)
T ss_dssp             HHHHHHH-H----SSCHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHh-C----hHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence            4455555 2    5688899999999984   34444431  24556666777763  33555556666666642  112


Q ss_pred             cchhhhhchhHHHHHHhcCcHHHHHHHHhc----CC-CHHHHHHHHHHHHHhh-------cC----------hHHHHHHH
Q 016639          294 DQVVASQVYGYARRFAKIGIARALVHSLHA----GL-SSPSLISASIALKAVA-------VN----------DEICKSVA  351 (385)
Q Consensus       294 ~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~----~~-~~~v~~~a~~aL~~La-------~~----------~e~c~~I~  351 (385)
                      .+.+         ++.  ..+++++..+..    .. ++.....+...+..|+       ..          .+.+..+.
T Consensus       621 ~~~~---------~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~  689 (971)
T 2x1g_F          621 EIPK---------YLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM  689 (971)
T ss_dssp             HHHH---------HHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred             HHHH---------HHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH
Confidence            1111         121  134555554432    11 2212222222333222       11          11112222


Q ss_pred             HcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       352 e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                       ...++.+..++..+.++.  .+.+.+|.++++
T Consensus       690 -~~i~~~l~~~l~~~~~~~--~v~e~~~~~~~~  719 (971)
T 2x1g_F          690 -QRTMPIFKRIAEMWVEEI--DVLEAACSAMKH  719 (971)
T ss_dssp             -HTTHHHHHHHHHHTTTCH--HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhccccH--HHHHHHHHHHHH
Confidence             246677777777654333  899999999875

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=86.38  E-value=6.1  Score=38.59  Aligned_cols=120  Identities=12%  Similarity=0.181  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc
Q 016639          192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS  271 (385)
Q Consensus       192 vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~  271 (385)
                      +...+...|..|.++.+.-+-++..+|+..+..+..  ..+.++.+++|..|..+...-.-+  .+--...+|-++..++
T Consensus       259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~  334 (619)
T 3c2g_A          259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIE  334 (619)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhc
Confidence            455566667767776544467889999999999886  468999999999998754211000  0001246677788887


Q ss_pred             cC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCC
Q 016639          272 RQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL  325 (385)
Q Consensus       272 ~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~  325 (385)
                      .| .++++-...+.|+|.....          .+.+.++ ..|+|..|...+...+
T Consensus       335 ~h~eDdvvYSGTGFLSNVVAHK----------q~VKelAI~~nAI~LLh~~I~ky~  380 (619)
T 3c2g_A          335 IHPDDEVIYSGTGFLSNVVAHK----------QHVKDIAIRSNAIFLLHTIISKYP  380 (619)
T ss_dssp             HCCCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHTTHHHHHHHHHHTSC
T ss_pred             cCCCcceEEecchHHHHHHhcc----------cchHHHHhccCcHHHHHHHHhhCC
Confidence            76 4588889999999987421          3466777 6899999999886653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=85.15  E-value=35  Score=36.46  Aligned_cols=133  Identities=15%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      +......+++.|..++.+  -...     ...-++.++..+.....+++.+...++++++..+..-...+.++ ...++.
T Consensus       462 ~w~~~eaal~al~~i~~~--~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~  533 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAET--IDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL  533 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTS--CCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred             chHHHHHHHHHHHHHHhh--cCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence            556677778888887765  2210     12345566666544333467789999999998765311112222 255677


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccC--ChHHHHHHHHHHHHhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQ--RNDSIQSLYDAIRVLL  289 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt  289 (385)
                      ++..|.    ++.+...||+++..+|..   .+..+.-  ...+..|..++...  ....+..+..++..++
T Consensus       534 l~~~l~----~~~V~~~A~~al~~l~~~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~  598 (963)
T 2x19_B          534 VLHALG----NPELSVSSVSTLKKICRE---CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL  598 (963)
T ss_dssp             HHHHTT----CGGGHHHHHHHHHHHHHH---TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhC----CchHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            777764    278899999999999843   3332321  12334445555543  3356666777777775

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=83.61  E-value=13  Score=33.68  Aligned_cols=136  Identities=9%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChh--hHH--HHHHcCcHHHHHHH-HhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSV--NAA--VATKNGGVELVCSI-CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG  216 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~--~r~--~~~~~Gaip~Lv~l-L~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~  216 (385)
                      +...+..++..|..++... ...  .+.  ...-...+|.|++- |.+   ....+...|+.++..++........+   
T Consensus        68 N~~v~~~al~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~lveK~l~~---~k~~~~~~a~~~l~~~~~~~~~~~~~---  140 (278)
T 4ffb_C           68 NVVAQEQAIVALNSLIDAF-ASSSLKNAHNITLISTWTPLLVEKGLTS---SRATTKTQSMSCILSLCGLDTSITQS---  140 (278)
T ss_dssp             SHHHHHHHHHHHHHHHTTC-C---CCHHHHHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHTSSSSHHH---
T ss_pred             hHHHHHHHHHHHHHHHHHh-hhhhcccchhHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhcCcHHHH---
Confidence            7788888999998887641 111  111  11222356666653 333   35667777777777665322111111   


Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC--h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGN--E-VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~--e-~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                        ++.++..|.  ..++.+...++.+|..+....  . .+-..++ ..+++.+..+|.+.+..|+.+|..++..|-
T Consensus       141 --~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          141 --VELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             --HHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence              233333343  358899999999988764321  1 0111111 124456677777777778888887777663

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=82.45  E-value=58  Score=35.07  Aligned_cols=100  Identities=10%  Similarity=0.001  Sum_probs=61.8

Q ss_pred             CcHhHHHHHHHHHHHHhcCCccchhHhhC-----CCcHH----HHHHHhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHH
Q 016639          188 GSKRVLDSCLKTMALLVHDVQSTETFRTG-----GGPKL----LVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESY  257 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~-----ggi~~----Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~i  257 (385)
                      .+......|+.++++++.+...+..-...     .-.+.    ++..|.+.. ..+-+...+||++...+..-  ..+. 
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~-  493 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ-  493 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH-
Confidence            35567888999999987642111100100     11222    233344421 26788999999999876431  2222 


Q ss_pred             HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639          258 MELKIDELILEILSRQRNDSIQSLYDAIRVLLTP  291 (385)
Q Consensus       258 v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~  291 (385)
                       -..+++.++..|...+..|+..||++|.+++..
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence             234677888888776667888999999999863

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=82.26  E-value=33  Score=32.20  Aligned_cols=140  Identities=10%  Similarity=0.050  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639          232 DPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA  309 (385)
Q Consensus       232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~--G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~  309 (385)
                      .+..+--++++++|+. .++.-++.++..  .+++.+..++...+..++-.++..+.|++.--- +.   ...+....  
T Consensus       161 ~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~-~~---~~~~~~~~--  233 (304)
T 3ebb_A          161 KPANQLLALRTFCNCF-VGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH-KD---HNIEGKAQ--  233 (304)
T ss_dssp             CHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH-HS---CCHHHHHH--
T ss_pred             ChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh-hc---CCchHHHH--
Confidence            4556778899999965 677788877753  234444444444444677778888888873100 00   00111111  


Q ss_pred             hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                         ++..+..+++...+.+.+-.++.+|.+|...+.....+.+.=|+...+.-..+.+. +  .-+++||..|=+
T Consensus       234 ---ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~--~kv~~~~~~~~~  302 (304)
T 3ebb_A          234 ---CLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-P--AKVSECCRFILN  302 (304)
T ss_dssp             ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-S--HHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-c--hhHHHHHHHHHH
Confidence               34555566655447778788888999998765434444433344433344444333 3  457788877654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=80.04  E-value=57  Score=34.80  Aligned_cols=137  Identities=10%  Similarity=0.026  Sum_probs=83.4

Q ss_pred             CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 016639          188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELI  266 (385)
Q Consensus       188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~L  266 (385)
                      .+......++.++++++.+-...    ...-++.++..|-.-. +++.+...++|++...+.--..+. .+. ..+++.|
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence            45677888999999998764321    1122344555543322 467788999999987653212222 233 4788999


Q ss_pred             HHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 016639          267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV  342 (385)
Q Consensus       267 v~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~  342 (385)
                      +..|..  ..|+..||++|..++.+  .+..+.   .+.     ...+..|..++.... +...+..+..++..++.
T Consensus       535 ~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~---p~~-----~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          535 LHALGN--PELSVSSVSTLKKICRE--CKYDLP---PYA-----ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHTTC--GGGHHHHHHHHHHHHHH--TGGGCT---TTH-----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhCC--chHHHHHHHHHHHHHHH--HHHHHH---hhH-----HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            998854  56888999999999832  221110   111     123455566666533 45566677777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.77
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.71
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.82
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.47
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.13
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.33
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.1
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.78
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.71
d1b3ua_	588	Constant regulatory domain of protein phosphatase	95.65
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.1
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	94.99
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.79
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.55
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.41
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	94.41
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.28
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.02
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	92.53
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	89.87
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.42
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	87.42
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	84.61

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.9e-23  Score=203.62  Aligned_cols=347  Identities=16%  Similarity=0.182  Sum_probs=259.6

Q ss_pred             cccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHhh
Q 016639           10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKEN   76 (385)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~en   76 (385)
                      .-+|++.+.|.++.+.    +|..++||     ..|+||..+.+|++.+++..+..+.    +.++.-+..+ +.++.++
T Consensus        21 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~-~~i~~~~   99 (434)
T d1q1sc_          21 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGG   99 (434)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH-HHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh-hHhhhcc
Confidence            3468899999999888    57889998     6799999999999988877775554    2333333333 6666665


Q ss_pred             -----HHhcCCChhHHHHHHHHHH---------------HHcCCC-CCCCccCCCCC-------------------CCCC
Q 016639           77 -----MEDLGMEPTEALQDAIQTL---------------SLQGVD-LSGIVKCVPGE-------------------SSLK  116 (385)
Q Consensus        77 -----i~~f~m~~~eAl~~aI~qf---------------e~QGvd-Lsni~~~~~~~-------------------~~~~  116 (385)
                           +..+.-+..+..+.|+.-+               +..|++ |-.+.......                   ....
T Consensus       100 ~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         100 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence                 4444444445555543322               112221 11111110000                   0000


Q ss_pred             C---chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHH
Q 016639          117 D---NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVL  193 (385)
Q Consensus       117 ~---~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl  193 (385)
                      .   ......+..|...+...       +.+....+++.|..++..  ++..+..+...|++|.|+.++++   ++..++
T Consensus       180 ~~~~~~~~~~l~~l~~ll~~~-------~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~---~~~~~~  247 (434)
T d1q1sc_         180 APPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGA---TELPIV  247 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTC---SCHHHH
T ss_pred             cchhhhhhhHHHHHHHHHhcc-------ccchhhhHHhhhcccchh--hhhhHHHHhhcccchhccccccc---chhhhh
Confidence            0   01123455555555443       778889999999999986  77778888999999999999987   488899


Q ss_pred             HHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc
Q 016639          194 DSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR  272 (385)
Q Consensus       194 ~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~  272 (385)
                      ..++++|.+++.+++. +..+++.|+++.++.+|++  .+.+++..++++|.+++..+++.+..+.+.|+++.++.+|.+
T Consensus       248 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~  325 (434)
T d1q1sc_         248 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  325 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             hchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc--cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhc
Confidence            9999999999987654 4778899999999999985  578899999999999999899999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-------ChH
Q 016639          273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-------NDE  345 (385)
Q Consensus       273 ~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-------~~e  345 (385)
                      .+.+++++|+|+|.+++...        ..++...+.+.|++++|+++|+.. ++.++..++.+|.++..       .+.
T Consensus       326 ~~~~v~~~a~~~l~nl~~~~--------~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll~~~~~~~~~~~  396 (434)
T d1q1sc_         326 ADFKTQKEAAWAITNYTSGG--------TVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAEKLGETEK  396 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHS--------CHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             cChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            88899999999999998532        235566788999999999999874 77788888888888742       246


Q ss_pred             HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ++..+.+.||++.|.. |++   ++|.++.+.|..+|.+
T Consensus       397 ~~~~~~~~~~~~~i~~-L~~---~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         397 LSIMIEECGGLDKIEA-LQR---HENESVYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHHTTSHHHHHH-HHT---CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH-HHc---CCCHHHHHHHHHHHHH
Confidence            8899999999998855 555   5667899999999864

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=8.8e-23  Score=204.62  Aligned_cols=337  Identities=14%  Similarity=0.149  Sum_probs=261.0

Q ss_pred             hhcccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHH
Q 016639            8 YYKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVK   74 (385)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~   74 (385)
                      ...-+|++.+.|+++++.    |+.+.+||     ..|++|..+.+|+.+++...++.+.    +.+...++.+ ..++.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~-~~~~~  160 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT-KVVVD  160 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH-HHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHh
Confidence            344588899999998887    67789998     6899999999999988887887655    3344334443 55555


Q ss_pred             hh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHH
Q 016639           75 EN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMM  147 (385)
Q Consensus        75 en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~  147 (385)
                      .+     +..+.-+..+..+.|+       +-|+||+.+.+..+.    .+.  ..+..|...+...       +.+...
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~-------~~L~nia~~~~~~r~----~l~~~~~~~~L~~ll~~~-------~~~~~~  222 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAI-------WALGNVAGDSTDYRD----YVLQCNAMEPILGLFNSN-------KPSLIR  222 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHH-------HHHHHHHTTCHHHHH----HHHHTTCHHHHHHGGGSC-------CHHHHH
T ss_pred             CCChHHHHHHhcCCChhHHHHHH-------HHHHHHhhhhHHHHH----HHHhhcccccchhhcccC-------CHHHHH
Confidence            54     3333334456666666       456677655332111    111  2355566666544       677889


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHH
Q 016639          148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNIL  226 (385)
Q Consensus       148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL  226 (385)
                      .++|.|..+|..  ...........|++|.|+.++.+   .|..++..++++|++++.+.+. ...+++.|+++.++.+|
T Consensus       223 ~~~~~l~nl~~~--~~~~~~~~~~~~~l~~l~~~l~~---~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         223 TATWTLSNLCRG--KKPQPDWSVVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHHHHHHHCC--SSSCCCHHHHGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHhcC--CccchHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            999999999986  34434445567899999999987   4889999999999999977654 36788999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHH
Q 016639          227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR  306 (385)
Q Consensus       227 ~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~  306 (385)
                      ++  ++..+...+++++.+++.+++.....+++.|+++.|..+|.+++..+++++||+|++++..+.         ++..
T Consensus       298 ~~--~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~---------~~~~  366 (503)
T d1wa5b_         298 SH--ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---------EQIQ  366 (503)
T ss_dssp             GC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHH
T ss_pred             cC--CchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccH---------HHHH
Confidence            85  578999999999999999998888889999999999999999888999999999999986443         4556


Q ss_pred             HHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639          307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN----DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL  382 (385)
Q Consensus       307 ~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~----~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L  382 (385)
                      .+.+.|+++.++.+|... +..++.+++++|.+++..    .+.+..+++.|+++.+++++..    .+.++...++.+|
T Consensus       367 ~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~----~d~~~~~~~L~~l  441 (503)
T d1wa5b_         367 AVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----ADNRIIEVTLDAL  441 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----CCHHHHHHHHHHH
T ss_pred             HHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcC----CCHHHHHHHHHHH
Confidence            778999999999999885 677999999999999853    3678889999999999999965    2347888888877


Q ss_pred             hc
Q 016639          383 SK  384 (385)
Q Consensus       383 r~  384 (385)
                      .+
T Consensus       442 ~~  443 (503)
T d1wa5b_         442 EN  443 (503)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-20  Score=187.04  Aligned_cols=236  Identities=15%  Similarity=0.114  Sum_probs=203.2

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTM  200 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al~aL  200 (385)
                      .++..|...+...       +.+....++..|..+++.   ...|..+.+ .|+++.|+.+|+..  ++..+...|+++|
T Consensus        17 ~aip~L~~lL~~~-------~~~v~~~A~~~l~~l~~~---~~~~~~~~~~~~~v~~l~~~L~~~--~~~~~~~~a~~~L   84 (529)
T d1jdha_          17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL   84 (529)
T ss_dssp             CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhc---cHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence            4577788888654       788999999999999974   566666555 47799999999875  5778999999999


Q ss_pred             HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639          201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS  280 (385)
Q Consensus       201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~  280 (385)
                      .+|+.+.+.+..+++.||++.|+.+|++  ++.+++..++++|.++|..++..|+.+.+.|++++|+.+|++.+.+++..
T Consensus        85 ~~l~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~  162 (529)
T d1jdha_          85 HNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHhCCchhHHHHHHCCCHHHHHHHhCC--CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHH
Confidence            9999887777889999999999999985  57899999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639          281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL  360 (385)
Q Consensus       281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv  360 (385)
                      ++++|.+|+..++.         +...+.+.|++++|+.+|+.+.+..++..++.++.+++.++++...+.+.||++.|+
T Consensus       163 a~~~L~~l~~~~~~---------~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~  233 (529)
T d1jdha_         163 TTDCLQILAYGNQE---------SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HHHHHHHHHTTCHH---------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHhhhhhH---------HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHH
Confidence            99999999876542         334567899999999999987667788899999999999999999999999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          361 RCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       361 ~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      .++.+    .+..+...++.+|++
T Consensus       234 ~ll~~----~~~~~~~~a~~~l~~  253 (529)
T d1jdha_         234 LHLTD----PSQRLVQNCLWTLRN  253 (529)
T ss_dssp             TTTTS----SCHHHHHHHHHHHHH
T ss_pred             HHhcc----cchhhhhhhhhHHHh
Confidence            88865    334788888888765

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.2e-19  Score=179.62  Aligned_cols=337  Identities=12%  Similarity=0.121  Sum_probs=243.9

Q ss_pred             CChhhhhHHhhhhhccCC-CCC-------CCCCCccccccccccCCCcccCCCchhhhhhhH--HHH-HHHHHhh-----
Q 016639           13 SNSEQIDFQKQSSLITLP-QPR-------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ--EAF-DEVVKEN-----   76 (385)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq--etf-d~~v~en-----   76 (385)
                      ..+.+.|+.+..-|...- ..+       ..|++|..+.+|...+.. ......-+-..|+.  ..+ +.++..+     
T Consensus       131 ~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~-i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L  209 (503)
T d1wa5b_         131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVE-VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI  209 (503)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChh-HHHHHHHHHHHHhhhhHHHHHHHHhhcccccc
Confidence            345677777776643321 122       679999999999854432 22111111111211  112 2223332     


Q ss_pred             HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHH
Q 016639           77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIEL  156 (385)
Q Consensus        77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~l  156 (385)
                      +..+.-...+.++.++       |-|+|++........  ...+..++..|...+...       +.+.+..++|.|..+
T Consensus       210 ~~ll~~~~~~~~~~~~-------~~l~nl~~~~~~~~~--~~~~~~~l~~l~~~l~~~-------d~~~~~~~~~~l~~l  273 (503)
T d1wa5b_         210 LGLFNSNKPSLIRTAT-------WTLSNLCRGKKPQPD--WSVVSQALPTLAKLIYSM-------DTETLVDACWAISYL  273 (503)
T ss_dssp             HHGGGSCCHHHHHHHH-------HHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHH
T ss_pred             hhhcccCCHHHHHHHH-------HHHHHHhcCCccchH--HHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHhh
Confidence            3334434445666666       455566544322111  112225677777777654       788999999999999


Q ss_pred             hcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHH
Q 016639          157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEI  235 (385)
Q Consensus       157 c~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v  235 (385)
                      +..  +++....+.+.|+++.|+.++.+   ++..+...|+++|++++.+.+. +..+++.|+++.+..+|++  ++..+
T Consensus       274 ~~~--~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~i  346 (503)
T d1wa5b_         274 SDG--PQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENI  346 (503)
T ss_dssp             HSS--CHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHH
T ss_pred             ccC--CchhhhhhhhhhhhhhhhhcccC---CchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC--CCHHH
Confidence            987  77778889999999999999987   4788999999999999987655 4677899999999999975  57889


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHH
Q 016639          236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR  315 (385)
Q Consensus       236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~  315 (385)
                      ...++|+|++++.+++.++..+++.|+++.++..|.+.+.+++++|+|+|.+++.....+      .+....+++.|+++
T Consensus       347 ~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~------~~~~~~l~~~~~l~  420 (503)
T d1wa5b_         347 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR------PDIIRYLVSQGCIK  420 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC------THHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccccc------HHHHHHHHHCCcHH
Confidence            999999999999999999999999999999999999999899999999999998533221      24566788999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhc------------ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          316 ALVHSLHAGLSSPSLISASIALKAVAV------------NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       316 ~Lv~lL~~~~~~~v~~~a~~aL~~La~------------~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      +|+++|+.. +..++..++.+|.++..            .+++...|.+.||++.|.. |+.   ++|.++++.|..+|.
T Consensus       421 ~l~~~L~~~-d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~-Lq~---~~~~~i~~~A~~il~  495 (503)
T d1wa5b_         421 PLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN-CQQ---NENDKIYEKAYKIIE  495 (503)
T ss_dssp             HHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG-GGG---CSCHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHH-HHc---CCCHHHHHHHHHHHH
Confidence            999999874 67677777777776631            2567789999999999854 555   466689999999885


Q ss_pred             c
Q 016639          384 K  384 (385)
Q Consensus       384 ~  384 (385)
                      +
T Consensus       496 ~  496 (503)
T d1wa5b_         496 T  496 (503)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-19  Score=180.55  Aligned_cols=247  Identities=17%  Similarity=0.169  Sum_probs=202.8

Q ss_pred             HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639          122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA  201 (385)
Q Consensus       122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa  201 (385)
                      .++..|...+...      .+.+....+++.|..+|.   +++++..+.+.|++|.|+.+|++   ++++++..|+++|+
T Consensus        59 ~~v~~l~~~L~~~------~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Li~lL~~---~~~~v~~~a~~aL~  126 (529)
T d1jdha_          59 QMVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLH  126 (529)
T ss_dssp             HHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC------CCHHHHHHHHHHHHHHhC---CchhHHHHHHCCCHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence            3566777776542      156788889999999997   68889999999999999999987   58899999999999


Q ss_pred             HHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHH
Q 016639          202 LLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQ  279 (385)
Q Consensus       202 ~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k  279 (385)
                      +|+.+.+. +..+.+.||++.|+++|++  ++.+++..+++++.+++..+++++..+.+.|++++|+.+|+.+.. .++.
T Consensus       127 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~  204 (529)
T d1jdha_         127 NLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW  204 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HhhcccchhhhHHHhcCCchHHHHHHHc--cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHH
Confidence            99988765 4678899999999999985  578999999999999999999999999999999999999988765 6778


Q ss_pred             HHHHHHHHhcCCCccchhhhhch-----------------hHHH-HH-----------HhcCcHHHHHHHHhcCCCHHHH
Q 016639          280 SLYDAIRVLLTPDDDQVVASQVY-----------------GYAR-RF-----------AKIGIARALVHSLHAGLSSPSL  330 (385)
Q Consensus       280 ~A~~aL~~Lt~~Dd~rv~~g~a~-----------------~~a~-~I-----------~e~Ggi~~Lv~lL~~~~~~~v~  330 (385)
                      .+++++.+++.+++++..+....                 .++. .+           ...|+++.|+.+|++. +..++
T Consensus       205 ~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~-~~~~~  283 (529)
T d1jdha_         205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD-DINVV  283 (529)
T ss_dssp             HHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCS-CHHHH
T ss_pred             HHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccc-cHHHH
Confidence            89999999999888887543321                 0100 11           1236788888888764 67788


Q ss_pred             HHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          331 ISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       331 ~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ..++++|.+|+.++ +++..+.+.||++.++.++....+.+  ++...++.+|++|
T Consensus       284 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~--~~~~~a~~aL~~l  337 (529)
T d1jdha_         284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHL  337 (529)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcch--hHHHHHHHHhhcc
Confidence            89999999998754 78899999999999999998755544  7888898888764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-18  Score=157.72  Aligned_cols=194  Identities=15%  Similarity=0.138  Sum_probs=165.6

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHH-HhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSI-CYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP  219 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~l-L~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi  219 (385)
                      +.+....+++.|..+|.   +.+++..+.+.||+++|+.. +.+   +++.+...|+++|++++.+++. +..+.+.||+
T Consensus        30 ~~~~~~~Al~~L~~L~~---~~d~a~~l~~~gg~~~ll~~ll~s---~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i  103 (264)
T d1xqra1          30 DQQEREGALELLADLCE---NMDNAADFCQLSGMHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL  103 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHc---CHHHHHHHHHcCCHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            56778889999999997   58888889999999999974 554   5889999999999999987655 4678899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhh
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS  299 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g  299 (385)
                      +.|+.+|.+. .+.+++..++++|++++..++.++..+.+.|+++.|+.+|++.+..++..++++|.+|+..++      
T Consensus       104 ~~Lv~lL~~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~------  176 (264)
T d1xqra1         104 RKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP------  176 (264)
T ss_dssp             HHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------
T ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH------
Confidence            9999999764 467899999999999999999999999999999999999999988999999999999985433      


Q ss_pred             hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHH
Q 016639          300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAE  352 (385)
Q Consensus       300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e  352 (385)
                         ++...+++.|+++.|+.+|++. ++.++..++++|.+|+... +....+..
T Consensus       177 ---~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         177 ---EHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             ---GGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             ---HHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence               3445688999999999999875 6678999999999999865 44445543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.2e-17  Score=160.18  Aligned_cols=237  Identities=13%  Similarity=0.107  Sum_probs=193.4

Q ss_pred             HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639          123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL  202 (385)
Q Consensus       123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~  202 (385)
                      +++.|...+.+.       +.+.+..++..|+.+.+. +....+..+.+.|++|.|+++|++.  +++.++..|+++|++
T Consensus        14 ~i~~lv~~l~s~-------~~~~~~~a~~~l~~l~s~-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~   83 (434)
T d1q1sc_          14 SVEDIVKGINSN-------NLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN   83 (434)
T ss_dssp             CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHHS-SSCCCHHHHHHTTCHHHHHHHTTCG--GGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHH
Confidence            467777777665       899999999999988654 1222355678999999999999764  467889999999999


Q ss_pred             HhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-----H
Q 016639          203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D  276 (385)
Q Consensus       203 L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-----~  276 (385)
                      ++.+.+. +..+++.|+++.++.+|++  ++.+++..++++|.+++..++..|..+.+.|+++.|+.+|..+..     .
T Consensus        84 la~~~~~~~~~i~~~~~i~~l~~~L~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~  161 (434)
T d1q1sc_          84 IASGTSEQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  161 (434)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HhcCChhhhhHhhhccchhhhhhcccc--CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH
Confidence            9877543 5788999999999999985  578999999999999999889999999999999999999987654     5


Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCc
Q 016639          277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGG  355 (385)
Q Consensus       277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GG  355 (385)
                      .++.++|++.+++.+......         .....++++.|+.+++.. ++.++.+++++|.+++..+ +....+.+.|+
T Consensus       162 ~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~  231 (434)
T d1q1sc_         162 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV  231 (434)
T ss_dssp             HHHHHHHHHHHHTCCCTTCCC---------HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhcccccch---------hhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhhhhHHHHhhccc
Confidence            677899999999876553332         123456789999988774 7789999999999999765 67788889999


Q ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          356 IDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ++.+++++.+    .+..+...++.+|++|
T Consensus       232 ~~~Lv~ll~~----~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         232 VPQLVKLLGA----TELPIVTPALRAIGNI  257 (434)
T ss_dssp             HHHHHHHHTC----SCHHHHHHHHHHHHHH
T ss_pred             chhccccccc----chhhhhhchhhhhhhH
Confidence            9999999865    3458999999988764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-17  Score=158.11  Aligned_cols=235  Identities=13%  Similarity=0.063  Sum_probs=179.6

Q ss_pred             HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L  203 (385)
                      +..|...+.+.       +++.+..+++.|..+|.+  ++++|..+.+.||||+|+++|++   ++++++..|+++|.+|
T Consensus         4 ip~lv~~L~~~-------~~~~~~~a~~~l~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~~L   71 (457)
T d1xm9a1           4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL   71 (457)
T ss_dssp             HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCcHHHHHHHHCC---CCHHHHHHHHHHHHHH
Confidence            55677777765       889999999999999987  89999999999999999999987   5889999999999999


Q ss_pred             hcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---------------------------------
Q 016639          204 VHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG---------------------------------  249 (385)
Q Consensus       204 ~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~---------------------------------  249 (385)
                      +.+++. +..+.+.||++.++.+++.. .+.+++..+++++.+++..                                 
T Consensus        72 ~~~~~~~~~~i~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  150 (457)
T d1xm9a1          72 VFRSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNM  150 (457)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred             HcCCHHHHHHHHHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhh
Confidence            966544 57888999999999988753 3344333333333332210                                 


Q ss_pred             ----------------------Chh-------------------------------------------------------
Q 016639          250 ----------------------NEV-------------------------------------------------------  252 (385)
Q Consensus       250 ----------------------~e~-------------------------------------------------------  252 (385)
                                            +++                                                       
T Consensus       151 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  230 (457)
T d1xm9a1         151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY  230 (457)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred             hcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence                                  000                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 016639          253 --------------------------------------------------------------------------------  252 (385)
Q Consensus       253 --------------------------------------------------------------------------------  252 (385)
                                                                                                      
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~  310 (457)
T d1xm9a1         231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN  310 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ------------hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHH
Q 016639          253 ------------VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS  320 (385)
Q Consensus       253 ------------nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~l  320 (385)
                                  .+..+.+.|+++.|+.+|.+.+.++++.++++|++|+.+++++.          .|. .++++.|+.+
T Consensus       311 l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~----------~i~-~~~i~~li~~  379 (457)
T d1xm9a1         311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR----------VMG-NQVFPEVTRL  379 (457)
T ss_dssp             HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHH----------HHH-HHTHHHHHHT
T ss_pred             HhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHH----------HHH-HhhHHHHHHH
Confidence                        11222345677888888877777788888888888887665543          354 4689999999


Q ss_pred             HhcCC-----CHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          321 LHAGL-----SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       321 L~~~~-----~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      |....     +.+++..+|.+|.+|+.. +++++.+.+.||++.|+++++++   .+..+.+.|+.+|.+|
T Consensus       380 L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~---~~~~~~~aA~~~L~~L  447 (457)
T d1xm9a1         380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSDM  447 (457)
T ss_dssp             TTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTT
T ss_pred             HhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Confidence            97643     236888999999999875 48999999999999999999873   3337899999999886

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.6e-17  Score=148.82  Aligned_cols=182  Identities=13%  Similarity=0.183  Sum_probs=155.4

Q ss_pred             cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639          189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE  268 (385)
Q Consensus       189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~  268 (385)
                      +......|+.+|..|+.+.+....+...||++.++..+-+ +++.++...++++|++++..++.++..+++.|+++.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~-s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            6677888999999999877667889999999999875443 367899999999999999989999999999999999999


Q ss_pred             HHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHH
Q 016639          269 ILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI  346 (385)
Q Consensus       269 lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~  346 (385)
                      +|.+. ...+++.++++|.+|+.+++         .+...+.+.||+++|+.+|++. +..++..++++|.+++. +++.
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~---------~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~  178 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQE---------AGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEH  178 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccch---------hhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHH
Confidence            99765 45788899999999986554         3345678999999999999885 77899999999999986 4689


Q ss_pred             HHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       347 c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      +..+.+.|+++.|+.++.+  .+.  ++.+.++.+|.+|
T Consensus       179 ~~~~~~~~~v~~L~~lL~~--~~~--~~~~~a~~aL~~L  213 (264)
T d1xqra1         179 KGTLCSMGMVQQLVALVRT--EHS--PFHEHVLGALCSL  213 (264)
T ss_dssp             HHHHHHTTHHHHHHHHHTS--CCS--THHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHcC--CCH--HHHHHHHHHHHHH
Confidence            9999999999999999975  233  6888888888764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5e-15  Score=140.61  Aligned_cols=177  Identities=11%  Similarity=0.083  Sum_probs=145.1

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE  251 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e  251 (385)
                      +.||.||++|++   ++++++..|+++|++|+.+++. +..+.+.||||.|+++|++  ++.+++..++++|.+++..++
T Consensus         2 ~~ip~lv~~L~~---~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~~~   76 (457)
T d1xm9a1           2 LTIPKAVQYLSS---QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             CCHHHHHHHHHS---SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCH
T ss_pred             CCHHHHHHHhCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCH
Confidence            469999999998   5899999999999999987655 7899999999999999985  688999999999999999999


Q ss_pred             hhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHH---------
Q 016639          252 VVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL---------  321 (385)
Q Consensus       252 ~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL---------  321 (385)
                      ++|..+.+.|+++.|+.++.+.. .+++..|+++|.+|+..+..+..          +.. .++++++..+         
T Consensus        77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~~  145 (457)
T d1xm9a1          77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE----------LIA-DALPVLADRVIIPFSGWCD  145 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH----------HHH-HHHHHHHHHTTHHHHTCC-
T ss_pred             HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHH----------HHh-cccHHHHHHHHhhhhhhhc
Confidence            99999999999999999997754 47888899999999987765543          222 2334444333         


Q ss_pred             ------hcCCCHHHHHHHHHHHHHhhcChHHHHHHHH-cCcHHHHHHHHHh
Q 016639          322 ------HAGLSSPSLISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDD  365 (385)
Q Consensus       322 ------~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e-~GGl~~Lv~ll~~  365 (385)
                            ....+..++..++.+|..++..++.+..+.. .|+++.++.++.+
T Consensus       146 ~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             --------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence                  1223567889999999999999888876665 4668999988865

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.00013  Score=71.26  Aligned_cols=234  Identities=12%  Similarity=0.039  Sum_probs=155.5

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHH--HcCcHHHHHHHHhcccCC--------------cHhHHHHHHHHHHHHhc
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVAT--KNGGVELVCSICYKMRCG--------------SKRVLDSCLKTMALLVH  205 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~--~~Gaip~Lv~lL~~~~~~--------------d~~vl~~Al~aLa~L~~  205 (385)
                      +.+.+.-++..+..+.+   .++.|..+.  +...+++|+.+|+.....              ...++..++-+++-|+.
T Consensus       178 ~~~~~~i~v~~lq~llr---~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  254 (477)
T d1ho8a_         178 QMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF  254 (477)
T ss_dssp             CHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHhc---CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc
Confidence            45556667788888888   488898874  445688888888653211              23668888888888877


Q ss_pred             CCccchhHhhCC--CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhCCChHHHHHHHccC--ChH
Q 016639          206 DVQSTETFRTGG--GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV-----KESYMELKIDELILEILSRQ--RND  276 (385)
Q Consensus       206 ~~~~~~~i~~~g--gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n-----r~~iv~~G~i~~Lv~lL~~~--~~~  276 (385)
                      ..+....+.+..  -++.++++++. ....+|++-++.++.|++......     ...++..+++ +++..|...  +++
T Consensus       255 ~~~~~~~l~~~~~~~i~~l~~i~~~-s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De  332 (477)
T d1ho8a_         255 NPVFANELVQKYLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE  332 (477)
T ss_dssp             SHHHHHHHHTTSHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence            543334444442  38888888887 457899999999999998754322     2223344555 555555442  443


Q ss_pred             HHHHHHHHHH--------HhcCCCccchhhhh-------ch-------hHHHHHHhc--CcHHHHHHHHhc---------
Q 016639          277 SIQSLYDAIR--------VLLTPDDDQVVASQ-------VY-------GYARRFAKI--GIARALVHSLHA---------  323 (385)
Q Consensus       277 v~k~A~~aL~--------~Lt~~Dd~rv~~g~-------a~-------~~a~~I~e~--Ggi~~Lv~lL~~---------  323 (385)
                      -+.+-...|.        .||.=|....+.-.       .|       +|++.+-+.  ..++.|+++|++         
T Consensus       333 dl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~  412 (477)
T d1ho8a_         333 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA  412 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccccc
Confidence            3333333333        34444444433211       12       777776543  358999999973         


Q ss_pred             CCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          324 GLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       324 ~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      ..|+.++.-||.=++.++.. ++-+..+.+.||=+.++++|.    |+|.+|.++|+.++-+
T Consensus       413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~----h~d~~Vr~eAL~avQk  470 (477)
T d1ho8a_         413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN----HSDSRVKYEALKATQA  470 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS----CSSHHHHHHHHHHHHH
T ss_pred             CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence            11567788899999998875 567788889999999999994    4566899999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.0064  Score=52.69  Aligned_cols=97  Identities=11%  Similarity=0.051  Sum_probs=54.3

Q ss_pred             HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639          124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL  203 (385)
Q Consensus       124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L  203 (385)
                      .+.|.+.+...       ++..-..++..|.....    +         .++|.|+.+|+.   .++.+...|+.+|+.+
T Consensus        21 ~~~L~~~L~d~-------~~~vR~~A~~~L~~~~~----~---------~~~~~l~~~l~d---~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          21 DDELFRLLDDH-------NSLKRISSARVLQLRGG----Q---------DAVRLAIEFCSD---KNYIRRDIGAFILGQI   77 (276)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHCC----H---------HHHHHHHHHHTC---SSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHHhhCC----H---------hHHHHHHHHHcC---CCHHHHHHHHHHHHHh
Confidence            34455665543       56666666666665521    1         247778887776   4677777777777766


Q ss_pred             hcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639          204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG  249 (385)
Q Consensus       204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~  249 (385)
                      .......+.     .++.+...+-. .++..+...++.+|..++..
T Consensus        78 ~~~~~~~~~-----~~~~l~~~~l~-d~~~~vr~~a~~aL~~~~~~  117 (276)
T d1oyza_          78 KICKKCEDN-----VFNILNNMALN-DKSACVRATAIESTAQRCKK  117 (276)
T ss_dssp             CCCTTTHHH-----HHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc-----hHHHHHHHHhc-CCChhHHHHHHHHHHHHccc
Confidence            432211111     12333443332 24667777777777766543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.062  Score=51.82  Aligned_cols=181  Identities=10%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639          175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK  254 (385)
Q Consensus       175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr  254 (385)
                      +|.+..++..   .+..+...++..++.++..-.  ..+....-.+.+..+|.+  +...+...+++++..++....   
T Consensus       404 l~~l~~~~~d---~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~D--~~~~VR~~A~~~L~~l~~~~~---  473 (588)
T d1b3ua_         404 LPAIVELAED---AKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVD--HVYAIREAATSNLKKLVEKFG---  473 (588)
T ss_dssp             HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcC--hHhHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHHHhC---
Confidence            4555555554   467788888888887764211  223333345566666664  457888888898888764321   


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHH
Q 016639          255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS  334 (385)
Q Consensus       255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~  334 (385)
                      .......+++.+...+.+.+...+..++.++..+...      ++      ........+|.|+.++... .+.|+..++
T Consensus       474 ~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~------~~------~~~~~~~ilp~ll~~~~D~-v~nVR~~a~  540 (588)
T d1b3ua_         474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CG------QDITTKHMLPTVLRMAGDP-VANVRFNVA  540 (588)
T ss_dssp             HHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HH------HHHHHHHTHHHHHHGGGCS-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH------cC------hHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            1223345778888888777766666777777776420      00      0122334788899988763 678999999


Q ss_pred             HHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       335 ~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      .+|..+...-+...  ...-..+.+.. +.+   ++|.+|-..|..+|..
T Consensus       541 ~~l~~i~~~~~~~~--~~~~i~~~l~~-L~~---D~d~dVr~~A~~al~~  584 (588)
T d1b3ua_         541 KSLQKIGPILDNST--LQSEVKPILEK-LTQ---DQDVDVKYFAQEALTV  584 (588)
T ss_dssp             HHHHHHGGGSCHHH--HHHHHHHHHHH-HTT---CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHh--HHHHHHHHHHH-HcC---CCCHHHHHHHHHHHHH
Confidence            99999875322111  11111233434 333   3445666666666654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.10  E-value=0.0053  Score=46.94  Aligned_cols=87  Identities=8%  Similarity=0.067  Sum_probs=67.0

Q ss_pred             CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639          173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV  252 (385)
Q Consensus       173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~  252 (385)
                      .+++.|+.+|..   .++.+...|+++|+.+..          .+.++.|+.+|.+  +++.|...++++|..+  +.+ 
T Consensus        22 ~~~~~L~~~l~d---~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d--~~~~VR~~a~~aL~~i--~~~-   83 (111)
T d1te4a_          22 EAFEPLLESLSN---EDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQI--GGE-   83 (111)
T ss_dssp             TTHHHHHHGGGC---SCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHH--CSH-
T ss_pred             HHHHHHHHHHcC---CCHHHHHHHHHHHHhcch----------hhhHHHHHhhhcc--chhHHHHHHHHHHHHh--Ccc-
Confidence            468889998876   588899999999987532          2346889999986  4788999999999875  333 


Q ss_pred             hHHHHHhCCChHHHHHHHccCChHHHHHHHHHH
Q 016639          253 VKESYMELKIDELILEILSRQRNDSIQSLYDAI  285 (385)
Q Consensus       253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL  285 (385)
                              +.++.|..+++..+..+++.|+.+|
T Consensus        84 --------~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          84 --------RVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             --------HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             --------chHHHHHHHHcCCCHHHHHHHHHHH
Confidence                    3567888889888778888887665

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.71  E-value=0.022  Score=43.19  Aligned_cols=88  Identities=16%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             CChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639          261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV  340 (385)
Q Consensus       261 G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L  340 (385)
                      ..+++|+.+|.+.+..++..|+++|..+..                    .+.++.|+.+|+.. ++.|+..++.+|..+
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------------------~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDD-SGFVRSGAARSLEQI   80 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------------hhhHHHHHhhhccc-hhHHHHHHHHHHHHh
Confidence            367889999998888888889988875531                    12478999999874 788999999999877


Q ss_pred             hcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       341 a~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      ..          -+.++.|..++++    ++..|.+.|+.+|.
T Consensus        81 ~~----------~~~~~~L~~ll~d----~~~~vr~~A~~aL~  109 (111)
T d1te4a_          81 GG----------ERVRAAMEKLAET----GTGFARKVAVNYLE  109 (111)
T ss_dssp             CS----------HHHHHHHHHHTTS----CCTHHHHHHHHHGG
T ss_pred             Cc----------cchHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence            42          1345566666653    34478899988875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.23  Score=47.53  Aligned_cols=133  Identities=5%  Similarity=-0.086  Sum_probs=84.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL  221 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~  221 (385)
                      ++.....++..+..+++.  -.. .  ......+|.|..+++.   .+..+...|+.++..+...-+  +.-....-++.
T Consensus       177 ~~~VR~~a~~~l~~~~~~--~~~-~--~~~~~l~~~l~~l~~d---~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~~~  246 (588)
T d1b3ua_         177 TPMVRRAAASKLGEFAKV--LEL-D--NVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLP--QEDLEALVMPT  246 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHT--SCH-H--HHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSC--HHHHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHHHHH--hcH-H--HHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHhhccCC--HHHHHHHHHHH
Confidence            555556666666666653  111 1  1123446666666655   477888888888888764322  12222234677


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      +..++.+  .+..+...++.++..++..-.   ..+.....++.+..++.....++...++.++..++
T Consensus       247 l~~~~~D--~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         247 LRQAAED--KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             HHHHHTC--SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhccc--ccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            7777764  467788888888887653211   22344567889999999888788888999888875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.13  Score=43.75  Aligned_cols=97  Identities=12%  Similarity=-0.047  Sum_probs=66.3

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh
Q 016639          218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV  297 (385)
Q Consensus       218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~  297 (385)
                      -.+.|+++|.+  +++.+...|+.+|...  +++         .+++.|+.+|+..+..++..|+.+|..+.......  
T Consensus        20 ~~~~L~~~L~d--~~~~vR~~A~~~L~~~--~~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~--   84 (276)
T d1oyza_          20 NDDELFRLLDD--HNSLKRISSARVLQLR--GGQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--   84 (276)
T ss_dssp             CHHHHHHHTTC--SSHHHHHHHHHHHHHH--CCH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH--
T ss_pred             CHHHHHHHhcC--CCHHHHHHHHHHHHhh--CCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc--
Confidence            34567788875  5789999999999864  332         25789999999888788888999998886433211  


Q ss_pred             hhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639          298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV  342 (385)
Q Consensus       298 ~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~  342 (385)
                                   ...++.+...+-...++.+...++.+|.+++.
T Consensus        85 -------------~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          85 -------------DNVFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             -------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             -------------cchHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence                         11234555555443466777777777777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.036  Score=56.82  Aligned_cols=111  Identities=9%  Similarity=-0.006  Sum_probs=75.0

Q ss_pred             cHHHHHHHHhcc-cCCcHhHHHHHHHHHHHHhcCCccchhHhh--CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639          174 GVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN  250 (385)
Q Consensus       174 aip~Lv~lL~~~-~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~  250 (385)
                      .+|.++..+... .+++......|+.+|+.++.|..  ..+..  ...++.++..|++  +++.+...+||+|...+...
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~--~~~~~~l~~li~~l~~~l~d--~~~~Vr~~a~~~l~~~~~~~  467 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWV  467 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSH--HHHTTTHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHH--HHhcccchhhhHHHHHhccC--CCHHHHHHHHHHHHHHHHHh
Confidence            466666665432 22467888899999999987642  12211  1345677777764  57889999999998765311


Q ss_pred             h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639          251 E-VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL  289 (385)
Q Consensus       251 e-~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt  289 (385)
                      . .....+ -..+++.++..+...+..|+..||++|.++.
T Consensus       468 ~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         468 VSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             HSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1 111122 2457888888888888789999999999996

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.62  Score=42.65  Aligned_cols=170  Identities=14%  Similarity=0.139  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCC
Q 016639          194 DSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYM-ELK  261 (385)
Q Consensus       194 ~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G  261 (385)
                      ...+..|..-+..++.  -+.| +.+|+..|+.+|..-         ..+...+..+.++|+.++. +..-...++ ...
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~   98 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE   98 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChH
Confidence            3344444433443333  2556 678999999988531         1135578889999998764 444445555 578


Q ss_pred             ChHHHHHHHccCChHHHHHHHHHHHHhcCCCcc---chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639          262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK  338 (385)
Q Consensus       262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~---rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~  338 (385)
                      ++..|+..|.+....+.+.|.-.|..++.-...   -...-.+.++....-+.+-..++++.|+...+.+.+...+..+-
T Consensus        99 ~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN  178 (343)
T d2bnxa1          99 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  178 (343)
T ss_dssp             HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999888878888899999888753221   11111234444444455667899998877545544444443333


Q ss_pred             Hhhc-------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639          339 AVAV-------NDEICKSVAENGGIDALLRCIDDS  366 (385)
Q Consensus       339 ~La~-------~~e~c~~I~e~GGl~~Lv~ll~~~  366 (385)
                      .+..       |-..+.++..+| +..+++-|+..
T Consensus       179 ~li~~~~dl~~R~~lR~E~~~~G-l~~il~~l~~~  212 (343)
T d2bnxa1         179 ALITPAEELDFRVHIRSELMRLG-LHQVLQELREI  212 (343)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTC
T ss_pred             HHHcCcccHHHHHHHHHHHHHCC-hHHHHHHHHcc
Confidence            3332       234667888875 55555777763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=1.2  Score=42.59  Aligned_cols=194  Identities=14%  Similarity=0.122  Sum_probs=113.0

Q ss_pred             cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh---hCCCcH---HHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639          174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---TGGGPK---LLVNILIDGNEDPEILNSGFAVVAASA  247 (385)
Q Consensus       174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~---~~ggi~---~Lv~lL~~~~~~~~v~~~a~~~L~~~~  247 (385)
                      ++..++.+|...  ...++....|--+.-|+..++....++   .....+   ++..+|  +.++.-++..++..+..++
T Consensus        75 ~~~~~l~lL~~~--sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l--~~~d~~~~~~s~~i~~ll~  150 (477)
T d1ho8a_          75 TLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL--KGDFQTVLISGFNVVSLLV  150 (477)
T ss_dssp             THHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS--CSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc--CcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc--cCchhHHHHHHHHHHHHHH
Confidence            578899999875  355666666666666666554332222   111111   111212  2234445666666666655


Q ss_pred             cCChhhHHHHHh-CCChHHHHHHH-ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH--hcCcHHHHHHHHhc
Q 016639          248 TGNEVVKESYME-LKIDELILEIL-SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA--KIGIARALVHSLHA  323 (385)
Q Consensus       248 ~~~e~nr~~iv~-~G~i~~Lv~lL-~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~--e~Ggi~~Lv~lL~~  323 (385)
                      .-.... ....+ .--...++..| .....+.+--+..++..|...+..|..          +.  +...+++|++.|+.
T Consensus       151 ~~~~~~-~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~----------fw~~~~~~~~~l~~il~~  219 (477)
T d1ho8a_         151 QNGLHN-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDV----------IWLHEKKFMPTLFKILQR  219 (477)
T ss_dssp             STTTCC-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHH----------HHTTHHHHHHHHHHHHHH
T ss_pred             hccccc-cchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHH----------HHHcccchHHHHHHHHHH
Confidence            422222 22111 11112233334 334445555566777777765555543          33  34467777777765


Q ss_pred             CCC----------------HHHHHHHHHHHHHhhcChHHHHHHHHcC--cHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639          324 GLS----------------SPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKV  385 (385)
Q Consensus       324 ~~~----------------~~v~~~a~~aL~~La~~~e~c~~I~e~G--Gl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l  385 (385)
                      ...                -.++=+++..++-|+.+.+++..+.+.+  -+..++++++..   .-+.+.|-++++|+||
T Consensus       220 a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s---~KEKvvRv~l~~l~Nl  296 (477)
T d1ho8a_         220 ATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT---IKEKVSRLCISIILQC  296 (477)
T ss_dssp             HHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHT
T ss_pred             HhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh---hHHHHHHHHHHHHHHH
Confidence            211                1234477888999999999999888764  488888999884   3348999999999986

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.14  Score=52.31  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             cHhHHHHHHHHHHHHhcCCcc-chhHh-hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 016639          189 SKRVLDSCLKTMALLVHDVQS-TETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELI  266 (385)
Q Consensus       189 d~~vl~~Al~aLa~L~~~~~~-~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~L  266 (385)
                      +......++..++.+..+-.. ...++ ...-++.+...+.+  .+.++...++.++..++......-...++ ..++.|
T Consensus       635 ~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l  711 (888)
T d1qbkb_         635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--KMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPIL  711 (888)
T ss_dssp             CTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCC--CChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Confidence            344555566666666543221 12222 23345666677664  46788888888888776544433222221 255666


Q ss_pred             HHHHccCChHHHHHHHHHHHHhcC--CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 016639          267 LEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVN  343 (385)
Q Consensus       267 v~lL~~~~~~v~k~A~~aL~~Lt~--~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~  343 (385)
                      +..|.....++..+|||++..|+.  +++.+.           .+ ...++.|+..|+... ++.+.+++|.+|++|+..
T Consensus       712 ~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~p-----------y~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         712 GTNLNPEFISVCNNATWAIGEISIQMGIEMQP-----------YI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             HHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGG-----------GS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhh-----------hH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            777766666888899999988863  222111           11 236789999998754 567889999999999754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.22  Score=45.04  Aligned_cols=141  Identities=7%  Similarity=-0.042  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc--hhHhhCCCcH
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPK  220 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~--~~i~~~ggi~  220 (385)
                      ......++..|...+..  .........-...++.++..+.+. +.+..+...|++++..+.......  .........+
T Consensus       143 ~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~il~~~~~~l~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  219 (458)
T d1ibrb_         143 EHMKESTLEAIGYICQD--IDPEQLQDKSNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ  219 (458)
T ss_dssp             HHHHHHHHHHHHHHHHH--SCGGGTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh--ccchhhhhhHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHh
Confidence            34445566666666643  111111111122456677777653 135678888999999887533210  0111112234


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL  288 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~L  288 (385)
                      .+..++.  .++.++...++.++..++......-...+..-..+.+...+.....++...++..+..+
T Consensus       220 ~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         220 VVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4444444  35788999999999888754443211122222233344445555556666666666554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.89  Score=47.10  Aligned_cols=190  Identities=9%  Similarity=0.024  Sum_probs=102.9

Q ss_pred             HHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 016639          181 ICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME  259 (385)
Q Consensus       181 lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~  259 (385)
                      +|.+..+.|+++.--|+..|...+..+... .+-....-++.|+++|.+  .+++|+..|+.++..+...-.+..   + 
T Consensus         8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D--~~~~Vq~~A~k~l~~l~~~~~~~~---~-   81 (1207)
T d1u6gc_           8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKEYQ---V-   81 (1207)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCHHH---H-
T ss_pred             HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCcHhh---H-
Confidence            344444468888877887777766432211 111122356788888875  579999999999998875543321   1 


Q ss_pred             CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016639          260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA  339 (385)
Q Consensus       260 ~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~  339 (385)
                      ...++.|+..|.+.+......++.+|+.+...-.... .+...  ...+ -...++.+...+....+..+..+++.+|..
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~-~~~~~--~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS-SGSAL--AANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCT--HHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc-ccchh--HHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            2356677777766666666677777776631100000 00000  0011 112345566666554466777788877777


Q ss_pred             hhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639          340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK  384 (385)
Q Consensus       340 La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~  384 (385)
                      +..+...-  +  ..-.+.++..+...-.+.+..|-+.++.+|..
T Consensus       158 l~~~~g~~--l--~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         158 MLSRQGGL--L--VNFHPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             HHHHTCSS--C--TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHhhHh--h--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            75432100  0  00122333444433444555676777776653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=7.7  Score=37.43  Aligned_cols=139  Identities=8%  Similarity=-0.039  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc---hhHhhCCCc
Q 016639          143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST---ETFRTGGGP  219 (385)
Q Consensus       143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~---~~i~~~ggi  219 (385)
                      ......++..|..+|+. -.+. ...-.-...++.++..+.+. ..+..+...|+.++.+........   ..+ ..--+
T Consensus       144 ~~~~~~~l~~l~~i~~~-~~~~-~~~~~~~~il~~i~~~l~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~~~i~  219 (876)
T d1qgra_         144 EHMKESTLEAIGYICQD-IDPE-QLQDKSNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEFTKANFDKESE-RHFIM  219 (876)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCHH-HHGGGHHHHHHHHHHHHSTT-CSCHHHHHHHHHHHHHHGGGCHHHHTSHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-CCHH-HHHHHHHHHHHHHHHHHcCc-CccHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHH
Confidence            34455678888888863 1111 11111123567777777653 234678888888888765432110   111 01113


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 016639          220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRV  287 (385)
Q Consensus       220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~  287 (385)
                      +.+...+.  .++.++...++.++..++....+.-...+...+.+.+...+.....++...++..+..
T Consensus       220 ~~l~~~~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         220 QVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            33344433  3578889999999988877665544444544555666666766665666555544433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.42  E-value=8.4  Score=34.58  Aligned_cols=178  Identities=13%  Similarity=0.057  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHHHHhcCCCChhhHH-HHHHcCcHHHHHHHHhccc--------CCcHhHHHHHHHHHHHHhcCCccchh
Q 016639          142 DLNEMMGLFDKLIELCGGNEGSVNAA-VATKNGGVELVCSICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTET  212 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~~~~~r~-~~~~~Gaip~Lv~lL~~~~--------~~d~~vl~~Al~aLa~L~~~~~~~~~  212 (385)
                      ..+.....+..|+...+.  .+-.|. .+ .++|+..|+.+|....        ..+......++++|-++++.......
T Consensus        16 ~~~~~~~~L~sL~v~Lrt--~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~   92 (343)
T d2bnxa1          16 RDMHLLSCLESLRVSLNN--NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKT   92 (343)
T ss_dssp             CHHHHHHHHHHHHHHHHH--SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhc--CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHH
Confidence            345566667777777776  454454 45 5678999999885432        11345677788888888775433333


Q ss_pred             H-hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC------ChhhHHH------HHhCCChHHHHHHHccCChHHHH
Q 016639          213 F-RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG------NEVVKES------YMELKIDELILEILSRQRNDSIQ  279 (385)
Q Consensus       213 i-~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~------~e~nr~~------iv~~G~i~~Lv~lL~~~~~~v~k  279 (385)
                      + -...++..++..|.+  +...+...++-+|..+|.-      |+..-++      .-+.+-..++++.|+.....-.+
T Consensus        93 vl~~~~~i~~l~~~L~s--~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~  170 (343)
T d2bnxa1          93 MLETEEGILLLVRAMDP--AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK  170 (343)
T ss_dssp             HHHSSSHHHHHHHTCCT--TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHH
T ss_pred             HHcChHHHHHHHHccCC--CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHH
Confidence            4 456778888887764  5778888888999888853      2222222      22346678888888877543344


Q ss_pred             HHHHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639          280 SLYDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS  329 (385)
Q Consensus       280 ~A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v  329 (385)
                      -+|-.+.|..  ..+|.+..     -|.+.=...-|+..+++-|+...++.+
T Consensus       171 ~a~m~lIN~li~~~~dl~~R-----~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         171 VGCLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHHHHHHTTCSCHHHH-----HHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHcCcccHHHH-----HHHHHHHHHCChHHHHHHHHccCChHH
Confidence            4555555542  22332211     111111133467778888888656544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=1.2  Score=39.72  Aligned_cols=180  Identities=12%  Similarity=0.049  Sum_probs=93.4

Q ss_pred             HHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 016639          178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESY  257 (385)
Q Consensus       178 Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i  257 (385)
                      |+++|.....+|.++...|...|..+...+.  +.     -+..+..+|.+...+..+...|+-.+++....+.......
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--~~-----~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVENL--PT-----FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--hH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            3444444444688888888888887755321  12     2466777777655567777777777777665554332211


Q ss_pred             H-----------hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh---cCcHHHHHHHHhc
Q 016639          258 M-----------ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLHA  323 (385)
Q Consensus       258 v-----------~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e---~Ggi~~Lv~lL~~  323 (385)
                      .           ...+...++..+..... +++.++.++..++..               .+.+   .+.++.++..+.+
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~-~~~~~~~~~~~i~~~---------------~~~~~~~~~~~~~l~~~l~~  138 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETY-RPSSASQCVAGIACA---------------EIPVNQWPELIPQLVANVTN  138 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCS-SSCSHHHHHHHHHHH---------------HGGGTCCTTHHHHHHHHHHC
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcH-HHHHHHHHHHHHHHH---------------hCCcccCcchhHHHHHHHHh
Confidence            1           11223344444444332 233344444433211               0111   2568889998887


Q ss_pred             CC-CHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639          324 GL-SSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS  383 (385)
Q Consensus       324 ~~-~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr  383 (385)
                      .. +......++.++..+...  ...... .-..-++.++..+.+  ++.+..+...++..+.
T Consensus       139 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~il~~~~~~l~~--~~~~~~v~~~a~~~l~  198 (458)
T d1ibrb_         139 PNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRK--EEPSNNVKLAATNALL  198 (458)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHST--TCCCHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHhhccchhhhh-hHHHHHHHHHHHhcc--cccCHHHHHHHHHHHH
Confidence            54 455666667777666432  110000 001123455555654  2333467777766654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.42  E-value=1.8  Score=44.64  Aligned_cols=180  Identities=11%  Similarity=0.081  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcH
Q 016639          142 DLNEMMGLFDKLIELCGGNE-GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK  220 (385)
Q Consensus       142 ~~~~~~~al~~L~~lc~~~~-~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~  220 (385)
                      |++.--.|+..|....+... ..++..   ....++.|+.+|..   .+++|+..|+++|+.+...-..  ..+ ..-++
T Consensus        16 D~d~R~ma~~dl~~~l~~~~~~~~~~~---~~~i~~~ll~~L~D---~~~~Vq~~A~k~l~~l~~~~~~--~~~-~~l~~   86 (1207)
T d1u6gc_          16 DKDFRFMATNDLMTELQKDSIKLDDDS---ERKVVKMILKLLED---KNGEVQNLAVKCLGPLVSKVKE--YQV-ETIVD   86 (1207)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTH---HHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTSCH--HHH-HHHHH
T ss_pred             CHhHHHHHHHHHHHHHhhcccccChHH---HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCcH--hhH-HHHHH
Confidence            78877788888887765410 011111   11257888888875   4789999999999998764321  111 11234


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh-hH----HHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCcc
Q 016639          221 LLVNILIDGNEDPEILNSGFAVVAASATGNEV-VK----ESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDD  294 (385)
Q Consensus       221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-nr----~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~  294 (385)
                      .|+..|.+  ++......++.+|+.+...-.. ..    ...+-...++.+...+..... .+..+++.+|..+......
T Consensus        87 ~L~~~l~~--~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          87 TLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHTTC--SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhcC--CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            44444433  3344444444455443321110 00    011112244555555555543 6677788888877531110


Q ss_pred             chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639          295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN  343 (385)
Q Consensus       295 rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~  343 (385)
                      -.     ..+     ....++.|+..|.+. +..++..++.+|..++..
T Consensus       165 ~l-----~~~-----~~~il~~l~~~l~~~-~~~vR~~A~~~l~~l~~~  202 (1207)
T d1u6gc_         165 LL-----VNF-----HPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMS  202 (1207)
T ss_dssp             SC-----TTT-----HHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTT
T ss_pred             hh-----HHH-----HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence            00     000     112355666666553 567888888888888653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.61  E-value=6.9  Score=37.55  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhh
Q 016639          219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA  298 (385)
Q Consensus       219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~  298 (385)
                      ++.+++.+.. .++..+...++.++..++....+.-..++ ..++|.|+..|......+...|+.++..++..-...   
T Consensus       599 ~~~l~~~l~~-~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~---  673 (861)
T d2bpta1         599 MGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED---  673 (861)
T ss_dssp             HHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG---
T ss_pred             HHHHhhhccc-CCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHH---
Confidence            4445555554 34455666777777776654333333333 247788999998877788888999998876311110   


Q ss_pred             hhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 016639          299 SQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV  342 (385)
Q Consensus       299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~  342 (385)
                            ....+ ...++.|++.|+... +..+...++.+|..++.
T Consensus       674 ------~~~~~-~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         674 ------FRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             ------GHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             ------hHhhH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence                  01111 135678888888754 55677778888877764