Citrus Sinensis ID: 016645

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccEcccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mklkfetsddplekITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGtvldaggsQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMsiggfpsfVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSgyfrlpndipkpvwrypmsyLSFHYWALQGQYQndlkglwfdnqspdlpkipgeyvlENVFQIdvrrskwiDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMqqkngtqnttvapdrltqspslRNYVANHAARAGKR
Flexible Loop (DISEMBL)
mklkfetsddplekITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRmqqkngtqnttvapdrltqspslrnyVANHAARAGKR
Low Complexity Region (SEG)
MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Disordered region (IsUnstruct)
**************ITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSI********FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLAR***************************************
Disordered Region (DISOPRED)
***K*****************KNLIDFYQTSQH***************************FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWI*********************************************
Disordered Region (DISEMBL)
*********DPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRM*********TVAPDRLTQSPSLRNYVA*********
Disordered Region (DISPRO)
****FETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG**L**GGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRR*************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q8RXN0	703	ABC transporter G family	yes	no	0.994	0.544	0.822	1e-175
Q8RWI9	691	ABC transporter G family	no	no	0.893	0.497	0.489	1e-100
Q9C8K2	687	ABC transporter G family	no	no	0.893	0.500	0.497	7e-94
Q9C8J8	678	ABC transporter G family	no	no	0.958	0.544	0.427	1e-90
Q9ZUU9	730	ABC transporter G family	no	no	0.815	0.430	0.325	6e-46
Q9MAH4	590	ABC transporter G family	no	no	0.677	0.442	0.274	1e-22
Q9SW08	577	ABC transporter G family	no	no	0.612	0.409	0.281	4e-21
Q9SIT6	649	ABC transporter G family	no	no	0.688	0.408	0.25	6e-20
Q3E9B8	624	ABC transporter G family	no	no	0.589	0.363	0.250	2e-19
Q9FLX5	589	ABC transporter G family	no	no	0.612	0.400	0.252	8e-19

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  616 bits (1588), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 316/384 (82%), Positives = 347/384 (90%), Gaps = 1/384 (0%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQAS
Sbjct: 320 MKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQAS 379

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASF
Sbjct: 380 FLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASF 439

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI NTLSA PFLIMITFISGTIC
Sbjct: 440 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTIC 499

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 500 YFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 559

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           +FRLPNDIPKP WRYPMSY+SFH+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVF
Sbjct: 560 FFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAF-KIPGEYVLENVF 618

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QID+ RSKWI+LSVI SMII YRIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTV
Sbjct: 619 QIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTV 678

Query: 361 APDRLTQSPSLRNYVANHAARAGK 384
           APD LTQSPSLRNY+A     A +
Sbjct: 679 APDGLTQSPSLRNYIATRTDGARR 702

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/345 (48%), Positives = 250/345 (72%), Gaps = 1/345 (0%)

Query: 8   SDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAF 66
           + DPL  + T+     L++ Y+ S+++ +AK ++  +S ++G  ++   GS+A++  Q  
Sbjct: 304 TSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLR 363

Query: 67  TLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVT 126
           TLT RSF+NM RD GYYW R++ Y+VV+I +GTI+ +VG  Y SILAR SC  F+ GF+T
Sbjct: 364 TLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMT 423

Query: 127 FMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL 186
           FMSIGGFPSF+E+MKVF +ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+ 
Sbjct: 424 FMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKF 483

Query: 187 HPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPN 246
            PGF HY FF L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAG+ GI M+ SG+FRL  
Sbjct: 484 RPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLP 543

Query: 247 DIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRR 306
           D+PK  WRYP+SY+S+  WA+QG Y+ND  GL F+   P  PK+ GE V+E VF + V  
Sbjct: 544 DLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTY 603

Query: 307 SKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQ 351
           SKW DL+ + ++++ YR++FFV++K+ E   P ++   A+R M+ 
Sbjct: 604 SKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQAKRTMRN 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  344 bits (882), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 172/346 (49%), Positives = 246/346 (71%), Gaps = 2/346 (0%)

Query: 8   SDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQA 65
           + DPL  + T+E    L++ Y+ S ++ +AK ++  ++ ++G   +    GS+A++  Q 
Sbjct: 304 TSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQL 363

Query: 66  FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFV 125
            TLTKRSFVNM RD GYYW R+VIY+VV+ C+GTI+ +VG  Y SILAR SC  F+ GF+
Sbjct: 364 RTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFM 423

Query: 126 TFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR 185
           TFMSIGGFPSF+E+MKVF +ERL+G+YGV+ ++I N +S+ PFL+ I  I+G+I Y MV+
Sbjct: 424 TFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVK 483

Query: 186 LHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLP 245
             PG  H+ FF L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAGI GI M+ SG+FRL 
Sbjct: 484 FRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLL 543

Query: 246 NDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVR 305
            D+PK  WRYP+S++S+  WA+QG Y+ND  GL FD      PK+ GE V+  +F + V 
Sbjct: 544 PDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVT 603

Query: 306 RSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQ 351
            SKW DLS I  +++ YRI+FF+++K+ E   P ++   A+R M+ 
Sbjct: 604 HSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQAKRTMKS 649

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  333 bits (855), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 248/377 (65%), Gaps = 8/377 (2%)

Query: 6   ETSD--DPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFL 62
           ET++  DPL+ I TAE    L+  ++ S ++ A++ +++ I+ + G V +   GSQ ++ 
Sbjct: 295 ETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWW 354

Query: 63  MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF 122
            Q   LT+RSF+NMSRD GYYW+R+ +Y+V++IC+G+I+ NVG  + ++++  +C  F+ 
Sbjct: 355 KQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMA 414

Query: 123 GFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYF 182
           GF+TFMSIGGF SF+E+MKVF RERLNGHYGV  + + N LS++PF+I++   + +I  +
Sbjct: 415 GFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIY 474

Query: 183 MVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYF 242
           MVR   G  H+ +  L L  ++  VES MM IAS+VPNFLMG++ GAG  GI +L +G+F
Sbjct: 475 MVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534

Query: 243 RLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQI 302
           R   D+P   WRYP+SY+++  WALQG Y+N++ G+ +D+  P +PK+ GE +L+ V  I
Sbjct: 535 RFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGI 594

Query: 303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAP 362
           +   SKW+DL+V+  ++I YRI FF ++K  E V P I     +R +       +     
Sbjct: 595 NPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSF---- 650

Query: 363 DRLTQSPSLRNYVANHA 379
            R+T  PS R Y  +HA
Sbjct: 651 RRMTPFPS-RRYPVHHA 666

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 185/320 (57%), Gaps = 6/320 (1%)

Query: 14  KITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSF 73
            + TA AI+ L   Y++S  + + +  +  +++ +GT L + G +A    +   LT RS 
Sbjct: 393 NMDTAVAIRTLEATYKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSL 451

Query: 74  VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGG 132
           + MSR++ YYWLRL++Y+++T+ IGT+Y  +G   +S+  R   A FVF  F + + I G
Sbjct: 452 LVMSREWKYYWLRLILYMILTLSIGTLYSGLGHSLSSVATR-VAAVFVFVSFASLLGIAG 510

Query: 133 FPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH 192
            PS ++++K+++ E  N H G   F++G  L ++PFL +++  S  + YFMV L   F  
Sbjct: 511 IPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSL 570

Query: 193 YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPV 252
            ++FVL  +  + V E LM+ IA I  +     +T   +  I ML +G+FR+   +PKPV
Sbjct: 571 LMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPV 630

Query: 253 WRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDV-RRSKWID 311
           W YP +Y+SFH ++++G  +N+  G  F     ++  I G   ++  +QI     +KW +
Sbjct: 631 WTYPFAYISFHTYSIEGLLENEYLGEVF--AVGEVRSISGYQAIQGNYQISPDTNAKWRN 688

Query: 312 LSVIFSMIISYRIIFFVMIK 331
           + V+ +M   YR++ +V+++
Sbjct: 689 MLVLLAMAFGYRLLVYVLLR 708

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 139/284 (48%), Gaps = 23/284 (8%)

Query: 49  GTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGT-G 107
           G +  +     S L +   L +RS  N+ R    +  R +   +  + +G+IYLNVG   
Sbjct: 318 GELHQSDSHSNSVLEEVQILGQRSCKNIFRTKQLFTTRALQASIAGLILGSIYLNVGNQK 377

Query: 108 YNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMP 167
             + + R    +F+  F+   +  G P F++D ++  RE     Y V ++V+ +TL  +P
Sbjct: 378 KEAKVLRTGFFAFILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIP 437

Query: 168 FLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT 227
           FL++I+ +  T  Y++V L      +L+F L ++  + +  S +   +++VPNF+MG   
Sbjct: 438 FLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSV 497

Query: 228 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 287
            +G+ G F L SGYF   + IP   W + M YLS   +  +    N+ +G  F  Q    
Sbjct: 498 ISGLMGSFFLFSGYFIAKDRIP-VYWEF-MHYLSLFKYPFECLMINEYRGDVFLKQQ--- 552

Query: 288 PKIPGEYVLENVFQIDVRRS-KWIDLSVIFSMIISYRII-FFVM 329
                          D++ S KW +L ++ S I+ YR++ FF++
Sbjct: 553 ---------------DLKESQKWSNLGIMASFIVGYRVLGFFIL 581

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=3 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 91  VVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 150
           +VV + +GTIYLN+GTG   I  R    +F   F+   +    P F+++  +  RE  +G
Sbjct: 327 LVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSG 386

Query: 151 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL 210
            Y +++ ++ NTL  +P+L++I  I     YF+V L   +    +FVL ++  V +  S 
Sbjct: 387 LYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSF 446

Query: 211 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQ 270
           ++ ++S+ PN++ G  +   +   F L SGYF     +PK  W + M + S + +AL   
Sbjct: 447 VLFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 504

Query: 271 YQNDLKGL------WFDNQSPDLPKIPGEYVLE-NVFQIDVRRSKWIDLSVIFSMIISYR 323
             N+   L      WF+  S +   + G  VL+ N       R +W ++ ++    + YR
Sbjct: 505 LINEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLH---ERQRWFNVYMLLGFFVLYR 561

Query: 324 II-FFVMIK 331
           ++ F V++K
Sbjct: 562 VLCFLVLLK 570

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 140/276 (50%), Gaps = 11/276 (3%)

Query: 60  SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCAS 119
           S L +   LT R   N+ R    +  R V  +   I +G I+ N+         R    +
Sbjct: 368 SRLEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKGARERVGLFA 427

Query: 120 FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTI 179
           F+  F+   +I   P F+++ ++  +E  +G Y V+++ + N L  +PFL+++  +  T 
Sbjct: 428 FILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTP 487

Query: 180 CYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVS 239
            Y++V L+P F+ +L F L ++  +    S+++  +++VPNF++G    +G+ G F L S
Sbjct: 488 VYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFS 547

Query: 240 GYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVL--E 297
           GYF   ++IP   W + M Y+S   +  +G   N+     F   +  L    G+ ++  E
Sbjct: 548 GYFISNHEIPG-YWIF-MHYISLFKYPFEGFLINE-----FSKSNKCLEYGFGKCLVTEE 600

Query: 298 NVFQIDV--RRSKWIDLSVIFSMIISYRIIFFVMIK 331
           ++ + +     S+W ++ ++   ++ YR I +V+++
Sbjct: 601 DLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILR 636

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 126/251 (50%), Gaps = 24/251 (9%)

Query: 86  RLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQR 145
           R +  VV  + +G++Y  +      +  R    +F   F+   ++   P ++ + +V  +
Sbjct: 373 RTMQAVVAGLGLGSVYTRLKRDEEGVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMK 432

Query: 146 ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVA 205
           E   G Y +++++I NT++ +PFL +++ +     Y++V L+P    + FFVLC++  + 
Sbjct: 433 ESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIIL 492

Query: 206 VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKP--------VWRYPM 257
           +  SL++ ++++ P+F+ G      + G F L SGYF     IPKP        ++RYP+
Sbjct: 493 MASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKEKIPKPWMFMYYVSLYRYPL 552

Query: 258 -SYLSFHYWALQGQ-YQNDLKGLWFDNQSPDLPKIPGEYVL-ENVFQIDVRRSKWIDLSV 314
            S +   YW+++ + + +   G            + GE VL E     D R   WI++ +
Sbjct: 553 ESMVVNEYWSMREECFSSGNMGCL----------MTGEDVLKERGLDKDTR---WINVGI 599

Query: 315 IFSMIISYRII 325
           + +  + YRI+
Sbjct: 600 MLAFFVFYRIL 610

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 10/246 (4%)

Query: 91  VVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 150
           +VV + +GTIY+N+G G   I  R    +F   F+   +    P F+ +  +  RE  +G
Sbjct: 339 LVVGLVLGTIYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSG 398

Query: 151 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL 210
            Y +++ ++ NTL  +P+L +I+ I     YF++ L P +  + +FVL ++  + +  S 
Sbjct: 399 IYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSF 458

Query: 211 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQ 270
           ++ ++S+ PN++ G      +   F L SGYF     +PK  W + M + S + +AL   
Sbjct: 459 VLFLSSLAPNYITGTSLVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 516

Query: 271 YQNDLKGL------WFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRI 324
             N+   L      W +     +  + G  VL+   +    + +W ++ V+    + YR+
Sbjct: 517 LINEYSCLASKCLVWLEEAQTKICMVTGGDVLKK--KGLHEKQRWFNVYVLLGFFVLYRV 574

Query: 325 IFFVMI 330
           + F+ +
Sbjct: 575 LCFLAL 580

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
32364696	705	ABC transporter [Gossypium hirsutum]	0.997	0.544	0.888	0.0
255569405	705	ATP-binding cassette transporter, putati	1.0	0.546	0.885	0.0
224118648	698	white-brown-complex ABC transporter fami	0.989	0.545	0.876	0.0
147773147	716	hypothetical protein VITISV_006943 [Viti	0.979	0.526	0.878	0.0
225454545	705	PREDICTED: ABC transporter G family memb	0.979	0.534	0.878	0.0
356559983	706	PREDICTED: ABC transporter G family memb	0.981	0.535	0.870	0.0
356531001	707	PREDICTED: ABC transporter G family memb	0.981	0.534	0.865	0.0
449469450	696	PREDICTED: ABC transporter G family memb	1.0	0.553	0.844	0.0
224116514	629	white-brown-complex ABC transporter fami	0.937	0.573	0.846	0.0
297844740	703	abc transporter family protein [Arabidop	0.994	0.544	0.822	1e-174

>gi|32364696|gb|AAP80385.1| ABC transporter [Gossypium hirsutum]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/385 (88%), Positives = 363/385 (94%), Gaps = 1/385 (0%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEKITT EAI+ LI+FY+TS   YAAKEKV+ ISKV+GTVLD+GGSQAS
Sbjct: 322 MKLRFEASDDPLEKITTTEAIRTLINFYRTSHQCYAAKEKVDEISKVRGTVLDSGGSQAS 381

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQ++TLTKRSFVNMSRDFGYYWLRL+IYVVVT+CIGTIYLN+GT YNSILARG+CASF
Sbjct: 382 FLMQSYTLTKRSFVNMSRDFGYYWLRLLIYVVVTVCIGTIYLNIGTSYNSILARGACASF 441

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC
Sbjct: 442 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 501

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HY+FFVLCLYASV VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG
Sbjct: 502 YFMVRLHPGFEHYMFFVLCLYASVTVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 561

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDLKGL FDNQ P+LPKIPGEY+LENVF
Sbjct: 562 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLLFDNQPPELPKIPGEYILENVF 621

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKWIDLSVIFSMII YRIIFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNT V
Sbjct: 622 QIDVGRSKWIDLSVIFSMIIIYRIIFFLMIKISEDVTPWIRGLVARRRMQQKNGTQNTMV 681

Query: 361 APDRLTQSPSLRNYVANHAARAGKR 385
           AP  L+QSPSLRNYVAN A   GKR
Sbjct: 682 APS-LSQSPSLRNYVANRANGRGKR 705

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569405|ref|XP_002525670.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535106|gb|EEF36788.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/385 (88%), Positives = 367/385 (95%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE+S+DPLEKITTAEAI+ L+++Y+TSQ+ YAA+EKVE ISKVKGTVLD+GGSQAS
Sbjct: 321 MKLRFESSEDPLEKITTAEAIRTLVNYYRTSQYYYAAREKVEEISKVKGTVLDSGGSQAS 380

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQAFTLTKRSFVNMSRDFGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASF
Sbjct: 381 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASF 440

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI NT+SAMPFLIMITFISGTIC
Sbjct: 441 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTISAMPFLIMITFISGTIC 500

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 501 YFMVRLHPGFEHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 560

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE +F
Sbjct: 561 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLLFDNQTPDLPKIPGEYILEYIF 620

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKW+DLSVIFSMI+ YRIIFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNTTV
Sbjct: 621 QIDVHRSKWVDLSVIFSMIVIYRIIFFIMIKISEDVTPWIRGYVARRRMQQKNGTQNTTV 680

Query: 361 APDRLTQSPSLRNYVANHAARAGKR 385
           APD LTQSPSLR Y+AN  AR  +R
Sbjct: 681 APDGLTQSPSLRAYIANRPARTLQR 705

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118648|ref|XP_002331414.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222873628|gb|EEF10759.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/381 (87%), Positives = 364/381 (95%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDP+EKITTAEAI++LI +Y+TSQ+ YAA+EKVE ISKVKG VL++GGS+AS
Sbjct: 318 MKLRFEASDDPIEKITTAEAIRSLIGYYRTSQYCYAAREKVEEISKVKGDVLESGGSRAS 377

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASF
Sbjct: 378 FLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASF 437

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVE+MKVFQRERLNGHYGV AFVI NT+SAMPFLIMITFISGT+C
Sbjct: 438 VFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVIAFVISNTISAMPFLIMITFISGTVC 497

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HYLFFVLCL+ASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 498 YFMVRLHPGFEHYLFFVLCLFASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 557

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDLKGL FDNQSPDLPKIPGEY+LEN+F
Sbjct: 558 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLLFDNQSPDLPKIPGEYILENIF 617

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKW+DLSVIFSMI+ YR+IFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNTTV
Sbjct: 618 QIDVHRSKWVDLSVIFSMIVIYRVIFFIMIKISEDVTPWIRGYIARRRMQQKNGTQNTTV 677

Query: 361 APDRLTQSPSLRNYVANHAAR 381
           APD LT SPSLRNYVA+H ++
Sbjct: 678 APDGLTHSPSLRNYVADHRSK 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773147|emb|CAN69297.1| hypothetical protein VITISV_006943 [Vitis vinifera]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/378 (87%), Positives = 362/378 (95%), Gaps = 1/378 (0%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKEKVE ISKVKGTVLD+GGSQAS
Sbjct: 321 MKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKEKVEEISKVKGTVLDSGGSQAS 380

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGTIYL+VGT YNSILARGSCASF
Sbjct: 381 FLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLDVGTSYNSILARGSCASF 440

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI NT+SAMPFLI+ITFISGT+C
Sbjct: 441 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTISAMPFLILITFISGTVC 500

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMV LHPGF+HYLFFVLCLYASV VVESLMMAIAS++PNFLMGII GAGIQGIFMLVSG
Sbjct: 501 YFMVHLHPGFLHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSG 560

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD-LPKIPGEYVLENV 299
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDLKGL FDNQ+P+ LPKIPG+Y+LENV
Sbjct: 561 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLMFDNQTPNGLPKIPGDYILENV 620

Query: 300 FQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTT 359
           FQI+V+RSKWIDLSVIFSMI+ YRIIFF+MIKI+EDVTPW+RG +ARRRMQQKNG Q TT
Sbjct: 621 FQINVKRSKWIDLSVIFSMIVVYRIIFFIMIKINEDVTPWVRGYIARRRMQQKNGNQTTT 680

Query: 360 VAPDRLTQSPSLRNYVAN 377
           +APD LTQSPSLR+YVA 
Sbjct: 681 IAPDGLTQSPSLRSYVAT 698

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454545|ref|XP_002262619.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera] gi|297737190|emb|CBI26391.3| unnamed protein product [Vitis vinifera]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/378 (87%), Positives = 362/378 (95%), Gaps = 1/378 (0%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKEKVE ISKVKGTVLD+GGSQAS
Sbjct: 321 MKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKEKVEEISKVKGTVLDSGGSQAS 380

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGTIYL+VGT YNSILARGSCASF
Sbjct: 381 FLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLDVGTSYNSILARGSCASF 440

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVI NT+SAMPFLI+ITFISGT+C
Sbjct: 441 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTISAMPFLILITFISGTVC 500

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMV LHPGF+HYLFFVLCLYASV VVESLMMAIAS++PNFLMGII GAGIQGIFMLVSG
Sbjct: 501 YFMVHLHPGFLHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSG 560

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD-LPKIPGEYVLENV 299
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDLKGL FDNQ+P+ LPKIPG+Y+LENV
Sbjct: 561 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLMFDNQTPNGLPKIPGDYILENV 620

Query: 300 FQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTT 359
           FQI+V+RSKWIDLSVIFSMI+ YRIIFF+MIKI+EDVTPW+RG +ARRRMQQKNG Q TT
Sbjct: 621 FQINVKRSKWIDLSVIFSMIVVYRIIFFIMIKINEDVTPWVRGYIARRRMQQKNGNQTTT 680

Query: 360 VAPDRLTQSPSLRNYVAN 377
           +APD LTQSPSLR+YVA 
Sbjct: 681 IAPDGLTQSPSLRSYVAT 698

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559983|ref|XP_003548275.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/378 (87%), Positives = 361/378 (95%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPL++ITTAEAI+ LIDFY+TSQHSYAA++KV+ ISKVKGTVL+AGGS+AS
Sbjct: 327 MKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAARQKVDEISKVKGTVLEAGGSEAS 386

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASF
Sbjct: 387 FLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASF 446

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVT+FVI NTLSAMPFLI+ITF+SGTIC
Sbjct: 447 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTSFVISNTLSAMPFLILITFLSGTIC 506

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 507 YFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 566

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLP+DIPKPVWRYPMSY+SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE VF
Sbjct: 567 YFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEKVF 626

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKWI+LSVIFSMI+ YRIIFF+MIK++EDVTPWIRG LARRRMQQK+G QNTT+
Sbjct: 627 QIDVNRSKWINLSVIFSMIVIYRIIFFIMIKVNEDVTPWIRGYLARRRMQQKSGAQNTTI 686

Query: 361 APDRLTQSPSLRNYVANH 378
           APD LTQSPSLR YV+  
Sbjct: 687 APDVLTQSPSLRTYVSTQ 704

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531001|ref|XP_003534067.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/378 (86%), Positives = 361/378 (95%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPL++ITTAEAI+ LIDFY+TSQHSYAA++KV+ IS+VKGTVL+AGGS+AS
Sbjct: 328 MKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAARQKVDEISRVKGTVLEAGGSEAS 387

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASF
Sbjct: 388 FLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASF 447

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVT+FVI NTLSAMPFLI+ITF+SGTIC
Sbjct: 448 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTSFVISNTLSAMPFLILITFLSGTIC 507

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 508 YFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 567

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLP+DIPKPVWRYPMSY+SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE VF
Sbjct: 568 YFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFDNQTPDLPKIPGEYILEKVF 627

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKWI+LSVIFSMI+ YRIIFF+MIK++EDVTPW+RG LARRRMQQK+G QNTT+
Sbjct: 628 QIDVNRSKWINLSVIFSMIVIYRIIFFIMIKVNEDVTPWVRGYLARRRMQQKSGAQNTTI 687

Query: 361 APDRLTQSPSLRNYVANH 378
           APD LTQSPSLR YV+  
Sbjct: 688 APDVLTQSPSLRTYVSTQ 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469450|ref|XP_004152433.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] gi|449524820|ref|XP_004169419.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/385 (84%), Positives = 355/385 (92%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE+SDDPLE+ITTAEA++ LIDFY++SQH YAA EKVE ISK KGTVLD GGSQAS
Sbjct: 312 MKLRFESSDDPLERITTAEAMRTLIDFYRSSQHCYAALEKVEEISKYKGTVLDLGGSQAS 371

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           F MQAFTLTKRSF+NMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF
Sbjct: 372 FFMQAFTLTKRSFINMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 431

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSF EDMKVF RERLNGHYGV +FVI NT+SAMPFL++ITF+SGTIC
Sbjct: 432 VFGFVTFMSIGGFPSFAEDMKVFHRERLNGHYGVGSFVISNTISAMPFLLLITFLSGTIC 491

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HYLFFVLCLYASV VVESLMMAIAS+VPNFLMGII GAGIQGIFMLVSG
Sbjct: 492 YFMVRLHPGFEHYLFFVLCLYASVTVVESLMMAIASVVPNFLMGIIIGAGIQGIFMLVSG 551

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLPNDIPKP WRYPMSY+SFH+WALQGQYQNDL GL FDNQSP LPK+PGEY+L+ VF
Sbjct: 552 YFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLLGLSFDNQSPLLPKLPGEYILKVVF 611

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QID+ RSKW+DLSV+F MI+ YR+IF +MIKI+EDVTPWIRG +ARRRMQQKNG  NTTV
Sbjct: 612 QIDLNRSKWVDLSVLFGMIVIYRLIFIIMIKINEDVTPWIRGYIARRRMQQKNGIVNTTV 671

Query: 361 APDRLTQSPSLRNYVANHAARAGKR 385
           APD LTQSPSLR+YVANH+ R  +R
Sbjct: 672 APDGLTQSPSLRSYVANHSTRPSRR 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116514|ref|XP_002331916.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222874588|gb|EEF11719.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/378 (84%), Positives = 342/378 (90%), Gaps = 17/378 (4%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEKITTAEAI+ LID Y+TSQ+ YAA+EKVE ISKV             
Sbjct: 269 MKLRFEASDDPLEKITTAEAIRTLIDHYRTSQYCYAAREKVEEISKV------------- 315

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
               AFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGTIYLNVGTGYNSILARGSCASF
Sbjct: 316 ----AFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASF 371

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVE+MKVFQRERLNGHYGV AFVI NT+SAMPFLIMITFISGT+C
Sbjct: 372 VFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVVAFVISNTISAMPFLIMITFISGTVC 431

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMVRLHPGF HY+FFVLCLYASV VVESLMM IASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 432 YFMVRLHPGFEHYVFFVLCLYASVTVVESLMMTIASIVPNFLMGIIIGAGIQGIFMLVSG 491

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           YFRLPNDIPKPVWRYPMSY+SFH+WALQGQYQNDLKGL FDNQSPDLPKIPGEY+LEN+F
Sbjct: 492 YFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLLFDNQSPDLPKIPGEYILENIF 551

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QIDV RSKW+DLSVIFSMI+ YRIIFF+MIKISED+TPWIRG +A+RRMQQKNGTQNTTV
Sbjct: 552 QIDVHRSKWVDLSVIFSMIVIYRIIFFIMIKISEDITPWIRGYIAKRRMQQKNGTQNTTV 611

Query: 361 APDRLTQSPSLRNYVANH 378
           APD L  SPSLRNYVA+ 
Sbjct: 612 APDGLIHSPSLRNYVADR 629

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844740|ref|XP_002890251.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297336093|gb|EFH66510.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/384 (82%), Positives = 347/384 (90%), Gaps = 1/384 (0%)

Query: 1   MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
           MKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQAS
Sbjct: 320 MKLRFEASDDPLEKITTAEAIRVLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQAS 379

Query: 61  FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
           FL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASF
Sbjct: 380 FLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASF 439

Query: 121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
           VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI NTLSA PFLIMITFISGTIC
Sbjct: 440 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTIC 499

Query: 181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
           YFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct: 500 YFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 559

Query: 241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
           +FRLPNDIPKP WRYPMSY+SFH+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVF
Sbjct: 560 FFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLMFDSQGSAF-KIPGEYVLENVF 618

Query: 301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
           QID+ RSKWI+LSVI SMII YRIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTV
Sbjct: 619 QIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTV 678

Query: 361 APDRLTQSPSLRNYVANHAARAGK 384
           APD LTQSPSLRNY+A     A +
Sbjct: 679 APDALTQSPSLRNYIATRTDGARR 702

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.974	0.533	0.837	3.8e-172
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	0.890	0.499	0.498	4.8e-94
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.890	0.496	0.491	7.8e-94
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.958	0.544	0.427	3.8e-85
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.836	0.441	0.320	4.6e-47
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.815	0.542	0.287	3.1e-32
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.815	0.542	0.287	3.1e-32
TAIR|locus:2117507	577	ABCG4 "ATP-binding cassette G4	0.612	0.409	0.281	1.6e-24
TAIR|locus:2009640	590	ABCG10 "ATP-binding cassette G	0.729	0.476	0.280	9.7e-24
DICTYBASE|DDB_G0282103	1159	abcG24 "ABC transporter G fami	0.698	0.232	0.250	1.8e-23

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
 Identities = 315/376 (83%), Positives = 345/376 (91%)

Query:     1 MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS 60
             MKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQAS
Sbjct:   320 MKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQAS 379

Query:    61 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 120
             FL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASF
Sbjct:   380 FLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASF 439

Query:   121 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
             VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFVI NTLSA PFLIMITFISGTIC
Sbjct:   440 VFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTIC 499

Query:   181 YFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 240
             YFMV LHPGF HYLFFVLCLYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG
Sbjct:   500 YFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSG 559

Query:   241 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVF 300
             +FRLPNDIPKP WRYPMSY+SFH+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVF
Sbjct:   560 FFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAF-KIPGEYVLENVF 618

Query:   301 QIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTV 360
             QID+ RSKWI+LSVI SMII YRIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTV
Sbjct:   619 QIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTV 678

Query:   361 APDRLTQSPSLRNYVA 376
             APD LTQSPSLRNY+A
Sbjct:   679 APDGLTQSPSLRNYIA 694

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 172/345 (49%), Positives = 247/345 (71%)

Query:     8 SDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTV-LDAG-GSQASFLMQA 65
             + DPL  + T+E    L++ Y+ S ++ +AK ++  ++ ++G   ++   GS+A++  Q 
Sbjct:   304 TSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQL 363

Query:    66 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFV 125
              TLTKRSFVNM RD GYYW R+VIY+VV+ C+GTI+ +VG  Y SILAR SC  F+ GF+
Sbjct:   364 RTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFM 423

Query:   126 TFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR 185
             TFMSIGGFPSF+E+MKVF +ERL+G+YGV+ ++I N +S+ PFL+ I  I+G+I Y MV+
Sbjct:   424 TFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVK 483

Query:   186 LHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLP 245
               PG  H+ FF L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAGI GI M+ SG+FRL 
Sbjct:   484 FRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLL 543

Query:   246 NDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVR 305
              D+PK  WRYP+S++S+  WA+QG Y+ND  GL FD      PK+ GE V+  +F + V 
Sbjct:   544 PDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVT 603

Query:   306 RSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 350
              SKW DLS I  +++ YRI+FF+++K+ E   P ++   A+R M+
Sbjct:   604 HSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQAKRTMK 648

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 169/344 (49%), Positives = 250/344 (72%)

Query:     8 SDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAF 66
             + DPL  + T+     L++ Y+ S+++ +AK ++  +S ++G  ++   GS+A++  Q  
Sbjct:   304 TSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLR 363

Query:    67 TLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVT 126
             TLT RSF+NM RD GYYW R++ Y+VV+I +GTI+ +VG  Y SILAR SC  F+ GF+T
Sbjct:   364 TLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMT 423

Query:   127 FMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL 186
             FMSIGGFPSF+E+MKVF +ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+ 
Sbjct:   424 FMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKF 483

Query:   187 HPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPN 246
              PGF HY FF L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAG+ GI M+ SG+FRL  
Sbjct:   484 RPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLP 543

Query:   247 DIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRR 306
             D+PK  WRYP+SY+S+  WA+QG Y+ND  GL F+   P  PK+ GE V+E VF + V  
Sbjct:   544 DLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTY 603

Query:   307 SKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 350
             SKW DL+ + ++++ YR++FFV++K+ E   P ++   A+R M+
Sbjct:   604 SKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQAKRTMR 647

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 161/377 (42%), Positives = 248/377 (65%)

Query:     6 ETSD--DPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFL 62
             ET++  DPL+ I TAE    L+  ++ S ++ A++ +++ I+ + G V +   GSQ ++ 
Sbjct:   295 ETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWW 354

Query:    63 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF 122
              Q   LT+RSF+NMSRD GYYW+R+ +Y+V++IC+G+I+ NVG  + ++++  +C  F+ 
Sbjct:   355 KQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMA 414

Query:   123 GFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYF 182
             GF+TFMSIGGF SF+E+MKVF RERLNGHYGV  + + N LS++PF+I++   + +I  +
Sbjct:   415 GFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIY 474

Query:   183 MVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYF 242
             MVR   G  H+ +  L L  ++  VES MM IAS+VPNFLMG++ GAG  GI +L +G+F
Sbjct:   475 MVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534

Query:   243 RLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQI 302
             R   D+P   WRYP+SY+++  WALQG Y+N++ G+ +D+  P +PK+ GE +L+ V  I
Sbjct:   535 RFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGI 594

Query:   303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAP 362
             +   SKW+DL+V+  ++I YRI FF ++K  E V P I     +R +       +     
Sbjct:   595 NPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSFR--- 651

Query:   363 DRLTQSPSLRNYVANHA 379
              R+T  PS R Y  +HA
Sbjct:   652 -RMTPFPS-RRYPVHHA 666

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 4.6e-47, P = 4.6e-47
 Identities = 105/328 (32%), Positives = 188/328 (57%)

Query:     6 ETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQA 65
             +  D     + TA AI+ L   Y++S  + + +  +  +++ +GT L + G +A    + 
Sbjct:   385 DNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRV 443

Query:    66 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GF 124
               LT RS + MSR++ YYWLRL++Y+++T+ IGT+Y  +G   +S+  R + A FVF  F
Sbjct:   444 AVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYSGLGHSLSSVATRVA-AVFVFVSF 502

Query:   125 VTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMV 184
              + + I G PS ++++K+++ E  N H G   F++G  L ++PFL +++  S  + YFMV
Sbjct:   503 ASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMV 562

Query:   185 RLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRL 244
              L   F   ++FVL  +  + V E LM+ IA I  +     +T   +  I ML +G+FR+
Sbjct:   563 GLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRI 622

Query:   245 PNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDV 304
                +PKPVW YP +Y+SFH ++++G  +N+  G  F     ++  I G   ++  +QI  
Sbjct:   623 RTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVF--AVGEVRSISGYQAIQGNYQISP 680

Query:   305 -RRSKWIDLSVIFSMIISYRIIFFVMIK 331
                +KW ++ V+ +M   YR++ +V+++
Sbjct:   681 DTNAKWRNMLVLLAMAFGYRLLVYVLLR 708

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 357 (130.7 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 96/334 (28%), Positives = 166/334 (49%)

Query:    15 ITTAEAIKNLI--DFYQTSQ--HSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTL 68
             I  AE + +LI  DF   S       +K     + KV GT  V     +  + +     L
Sbjct:   248 INPAEYVLDLINTDFQGDSSVLDDLVSKWNSGDVHKV-GTESVQLTEATTINEMQNILIL 306

Query:    69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM 128
               RS     RD   Y++RLV+Y+ + I +GT++L +  G  +I    +   F   F++FM
Sbjct:   307 IARSLTKARRDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFM 366

Query:   129 SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHP 188
             S+   PS++ED++ +++ER+NG YG  AF + N L  +PFL +I  +   I +FMV  H 
Sbjct:   367 SVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQ 426

Query:   189 GFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI 248
                 + ++++ L+  +   ES+   IAS+ PNF++ +   A   G++M V G F +P++I
Sbjct:   427 TASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGG-FLVPSNI 485

Query:   249 PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF---DN-----QSP--DLPKIPGEYVLEN 298
                 W Y   ++ +  +  QG   N+     F   D       SP     KI G+ VLE+
Sbjct:   486 LNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLES 545

Query:   299 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 332
             +   +  +  WI   V+ +++  YR   ++++K+
Sbjct:   546 LGYGNYDKGLWI--GVLIALVFVYRFATYIVLKL 577

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 357 (130.7 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 96/334 (28%), Positives = 166/334 (49%)

Query:    15 ITTAEAIKNLI--DFYQTSQ--HSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTL 68
             I  AE + +LI  DF   S       +K     + KV GT  V     +  + +     L
Sbjct:   248 INPAEYVLDLINTDFQGDSSVLDDLVSKWNSGDVHKV-GTESVQLTEATTINEMQNILIL 306

Query:    69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM 128
               RS     RD   Y++RLV+Y+ + I +GT++L +  G  +I    +   F   F++FM
Sbjct:   307 IARSLTKARRDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFM 366

Query:   129 SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHP 188
             S+   PS++ED++ +++ER+NG YG  AF + N L  +PFL +I  +   I +FMV  H 
Sbjct:   367 SVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQ 426

Query:   189 GFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI 248
                 + ++++ L+  +   ES+   IAS+ PNF++ +   A   G++M V G F +P++I
Sbjct:   427 TASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGG-FLVPSNI 485

Query:   249 PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF---DN-----QSP--DLPKIPGEYVLEN 298
                 W Y   ++ +  +  QG   N+     F   D       SP     KI G+ VLE+
Sbjct:   486 LNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLES 545

Query:   299 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 332
             +   +  +  WI   V+ +++  YR   ++++K+
Sbjct:   546 LGYGNYDKGLWI--GVLIALVFVYRFATYIVLKL 577

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2117507 ABCG4 "ATP-binding cassette G4" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 70/249 (28%), Positives = 126/249 (50%)

Query:    91 VVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 150
             +VV + +GTIYLN+GTG   I  R    +F   F+   +    P F+++  +  RE  +G
Sbjct:   327 LVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSG 386

Query:   151 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL 210
              Y +++ ++ NTL  +P+L++I  I     YF+V L   +    +FVL ++  V +  S 
Sbjct:   387 LYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSF 446

Query:   211 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQ 270
             ++ ++S+ PN++ G  +   +   F L SGYF     +PK  W + M + S + +AL   
Sbjct:   447 VLFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 504

Query:   271 YQNDLKGL------WFDNQSPDLPKIPGEYVLE-NVFQIDVRRSKWIDLSVIFSMIISYR 323
               N+   L      WF+  S +   + G  VL+ N       R +W ++ ++    + YR
Sbjct:   505 LINEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLH---ERQRWFNVYMLLGFFVLYR 561

Query:   324 II-FFVMIK 331
             ++ F V++K
Sbjct:   562 VLCFLVLLK 570

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2009640 ABCG10 "ATP-binding cassette G10" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
 Identities = 83/296 (28%), Positives = 140/296 (47%)

Query:     2 KLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV-KGTVLDAGGS--Q 58
             K+KF     P  ++   E   ++    +  +     +    G SK  K   + AGG   Q
Sbjct:   264 KIKFSGHQIP-RRVNVLEYAIDIAGSLEPIRTQSCREISCYGHSKTWKSCYISAGGELHQ 322

Query:    59 A-----SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNS--I 111
             +     S L +   L +RS  N+ R    +  R +   +  + +G+IYLNVG       +
Sbjct:   323 SDSHSNSVLEEVQILGQRSCKNIFRTKQLFTTRALQASIAGLILGSIYLNVGNQKKEAKV 382

Query:   112 LARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIM 171
             L  G  A F+  F+   +  G P F++D ++  RE     Y V ++V+ +TL  +PFL++
Sbjct:   383 LRTGFFA-FILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLI 441

Query:   172 ITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 231
             I+ +  T  Y++V L      +L+F L ++  + +  S +   +++VPNF+MG    +G+
Sbjct:   442 ISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGL 501

Query:   232 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 287
              G F L SGYF   + IP   W + M YLS   +  +    N+ +G  F  Q  DL
Sbjct:   502 MGSFFLFSGYFIAKDRIPV-YWEF-MHYLSLFKYPFECLMINEYRGDVFLKQQ-DL 554

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

DICTYBASE|DDB_G0282103 abcG24 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 283 (104.7 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 69/275 (25%), Positives = 134/275 (48%)

Query:    60 SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN-SILARGSCA 118
             SF  Q F + +RS +N  R+         +++ V + +G ++  +          R    
Sbjct:   881 SFWTQFFVVCRRSLLNYMRNPFLLRTTYFVHIFVGLTLGYLFWKLPANLEPGCQNRFGAM 940

Query:   119 SFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLS-AMPFLIMITFISG 177
              F+   ++F SI     F  D  +F RER NG Y  +A+ +   ++  +P  ++   I G
Sbjct:   941 FFMTALLSFGSITSLDLFYNDRIIFIRERANGFYRTSAYFLAKVVTDIIPMRVIPPIILG 1000

Query:   178 TICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFML 237
             +ICY+M+ L PG +H+++F++ L  +  V  S+ MAI++I P F    +    +  +F+L
Sbjct:  1001 SICYYMIGLRPGILHFIYFLISLVLTSTVASSMCMAISTISPTFGTANMVSILLLFVFLL 1060

Query:   238 VSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE 297
               G+    + IPK  +   + ++SF  + L+    N+  GLW +   P+      +  LE
Sbjct:  1061 FDGFLLARSSIPK--YLIGLVWISFMSYGLEIPVVNEFNGLWIEYNPPNTRPTYADG-LE 1117

Query:   298 NVFQIDVRRSK-WIDLSVIFSMIISYRIIFFVMIK 331
              +  I    ++ + D+ V+  MI+ Y ++ +V ++
Sbjct:  1118 FLSTIGANPNRLFTDMYVLLGMIVGYLLLAYVFLR 1152

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXN0	AB11G_ARATH	No assigned EC number	0.8229	0.9948	0.5448	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-33
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	5e-27
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-15
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-09
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-06

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  131 bits (331), Expect = 2e-33
 Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 23/340 (6%)

Query: 8   SDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG------GSQASF 61
           +  P  +  + E I+ + D +  S             S   G ++         G  AS+
Sbjct: 280 AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339

Query: 62  LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 121
             Q + L KRS++++ RD     +RL+  ++  I IG IYL  G     +         +
Sbjct: 340 WTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNING---AL 396

Query: 122 FGFVTFM----SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISG 177
           F F+T M           F  ++ VF RE  +G Y V+A+ +  T++ +P  I++  +  
Sbjct: 397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFT 456

Query: 178 TICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFML 237
           +I Y+M+ L  G  H+L F+  +     V  S    I+    +  M +  G      F+L
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516

Query: 238 VSGYFRLPNDIPKPVWRYPMSYLSFHYWA----LQGQYQNDLKGLWFDNQSPDLPKIPGE 293
             G+F   + IP   +++ +SYLS+  +     L  Q+ +          +       GE
Sbjct: 517 FGGFFINSDSIPV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGE 574

Query: 294 YVLENVFQIDVRRSK-WIDLSVIFSMIISYRIIFFVMIKI 332
            +LE    +  R +  ++DL  +  +I  +R++ +  ++I
Sbjct: 575 VILE---TLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  106 bits (266), Expect = 5e-27
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 5/208 (2%)

Query: 63  MQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 121
            Q   L KR F+   RD       RL+  +++ +  GT++ N+ T    +   G     +
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSI 60

Query: 122 FGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICY 181
                    G  P F+ +  V +RE  +  Y  +A+V+   L  +P  ++   I   I Y
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 182 FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGY 241
           FMV L      +  F+L L  +      L + IA++ P+F      G  +    +L+SG+
Sbjct: 121 FMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 242 FRLPNDIPKPVWRYPMSYLSFHYWALQG 269
           F   + +  P W   + YL+   +A++ 
Sbjct: 179 FIPVDSM--PGWLQWIYYLNPLTYAIEA 204

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 70/347 (20%), Positives = 124/347 (35%), Gaps = 60/347 (17%)

Query: 25  IDFYQTSQHSYAAKEKVE--GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 82
           ID Y         KE      ++K       +     SF MQ      R+F+ M  +  +
Sbjct: 362 IDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSF 421

Query: 83  YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 142
               +   +++ + + +++ N+    +   +RG    F   F  F S+    S  E   +
Sbjct: 422 TLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPI 481

Query: 143 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPG----FIHYLFFVL 198
            ++ R    Y  +A  I + +S +PF I+ + +   I YFMV         F + L   +
Sbjct: 482 VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFI 541

Query: 199 C------LYASVAVVE---SLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIP 249
           C      L+ S+  V    S  M  A+I+    + I TG  I    ML  G+ +      
Sbjct: 542 CTLAMSHLFRSIGAVTKTLSEAMTPAAILL-LALSIYTGFAIPRPSML--GWSK------ 592

Query: 250 KPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQ-----SPDLPKIPGEYV--------- 295
              W Y ++ L++ + +L     N+  G  F+             +              
Sbjct: 593 ---WIYYVNPLAYAFESLM---VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEP 646

Query: 296 ----------LENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 332
                     L+  FQ      KW +    F +II +  +FF  + I
Sbjct: 647 GQDYVDGDDYLKLSFQY-YNSHKWRN----FGIIIGF-TVFFFFVYI 687

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 49/271 (18%), Positives = 92/271 (33%), Gaps = 23/271 (8%)

Query: 12   LEKITTAEAIKNLIDFYQ---TSQHSYAAKEKVEGISKV---KGTVLDAGGSQ---ASFL 62
            LE I  A       D+++    S    A K +++ +           D        AS  
Sbjct: 1018 LEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLW 1077

Query: 63   MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSIL-ARGSCASFV 121
             Q   +  R+F    R   Y + +  + +   + IG  +  VGT    +     +     
Sbjct: 1078 YQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMAT 1137

Query: 122  FGFVTFMSIGGFPSFVEDMKVFQ-RERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180
              F   +     P FV    +++ RER +  +   AF+       +P+ ++   I   I 
Sbjct: 1138 VLFNPLIQ-QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIW 1196

Query: 181  YFMVRL-----HPGFIHYLFFVLCLY--ASVAVVESLMMAIASIVPNFLMGIITGAGIQG 233
            Y+ V         G +H    +  L          +L   + S  PN     +  + +  
Sbjct: 1197 YYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFT 1256

Query: 234  IFMLVSGYFRLPNDIPKP-VWRY---PMSYL 260
            + +   G    P+ +P   ++ Y   P +YL
Sbjct: 1257 MCLSFCGVLAPPSRMPGFWIFMYRCSPFTYL 1287

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 15/184 (8%)

Query: 82   YYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF----PSFV 137
            Y  +R    +   + +GTI+  VGT  ++          ++  V F+ I       P   
Sbjct: 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271

Query: 138  EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFV 197
             +  VF RER  G Y    + I   +  +P++++ T     I Y MV        + +F 
Sbjct: 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331

Query: 198  LCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKP------ 251
               + S        M   S+ PN  +  I  A   G+F L SG+F     IP+P      
Sbjct: 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF-----IPRPKIPKWW 1386

Query: 252  VWRY 255
            VW Y
Sbjct: 1387 VWYY 1390

Length = 1470

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 122 FGFVTFMSI--GGFPS------FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMIT 173
            G + F+SI  G FPS      F ++  +F +ER +G Y ++++ +   +  +P  +++ 
Sbjct: 439 LGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILP 498

Query: 174 FISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQG 233
            I  T+ Y+M  L P    +L  +L L   V V + L +A+ + +    M     + I  
Sbjct: 499 TIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAI----MDAKKASTIVT 554

Query: 234 I----FMLVSGYF--RLPNDIPKPVWRYPMSYLSFHYWALQ-------GQYQNDLKGLWF 280
           +    F+L  G++  +LP       W   + Y+S  +++ +       G+ +     L  
Sbjct: 555 VTMLAFVLTGGFYVHKLP---SCMAW---IKYISTTFYSYRLLINVQYGEGKRISSLLGC 608

Query: 281 DNQSPDLPKIPGEYVLENVF-QIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 331
                   +   ++V E+V  QI    S    +SV+  M + YR++ ++ ++
Sbjct: 609 SLPH-GSDRASCKFVEEDVAGQI----SPATSVSVLIFMFVGYRLLAYLALR 655

Length = 659

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.9
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.74
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.73
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.69
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.69
PRK15066	257	inner membrane transport permease; Provisional	99.62
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.59
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.22
COG0842	286	ABC-type multidrug transport system, permease comp	99.22
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.98
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.88
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	98.72
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.65
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.55
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.45
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	97.97
COG1277	278	NosY ABC-type transport system involved in multi-c	97.93
COG4587	268	ABC-type uncharacterized transport system, permeas	97.72
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	97.67
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	97.2
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	97.15
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	97.05
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.94
COG2386	221	CcmB ABC-type transport system involved in cytochr	96.81
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	96.55
COG1511	780	Predicted membrane protein [Function unknown]	96.44
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	95.99
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	94.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	94.28
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	93.1
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	91.92
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	87.25
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	81.43

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=4e-49  Score=405.51  Aligned_cols=331  Identities=23%  Similarity=0.358  Sum_probs=290.7

Q ss_pred             ccCCCCCCcccccch---------HHHHHHHHHHHhcCHHHHHHHHHHHhhhcccC-----Cc-cCCCCCCCCHHHHHHH
Q 016645            3 LKFETSDDPLEKITT---------AEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG-----TV-LDAGGSQASFLMQAFT   67 (385)
Q Consensus         3 ~~~~np~d~~~~~~~---------~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~~~q~~~   67 (385)
                      ++..||+|+++++.+         .+..+++.+.|++|+.+++..+.++....+++     .. .+...+..++++|+..
T Consensus       266 p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  345 (617)
T TIGR00955       266 PENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYA  345 (617)
T ss_pred             CCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHH
Confidence            466799999986532         34557788899998877766555443221111     11 1234567899999999


Q ss_pred             HHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhh-hhhhhHHhhhHHHHHH
Q 016645           68 LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRE  146 (385)
Q Consensus        68 L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-~~~~~~~~e~~v~~rE  146 (385)
                      |++|.+++.+|||.++..++++.+++++++|++|++.+.++.+++++.|++|+++.+..+.++ ..++.++.||.+|.||
T Consensus       346 l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE  425 (617)
T TIGR00955       346 LLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE  425 (617)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999988888865 4688999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 016645          147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGII  226 (385)
Q Consensus       147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~  226 (385)
                      +.+|+|++.+|++|++++++|+.++.+++|++|+|||+|+++++..|+.|++++++..+++.++|+++++++|+...|+.
T Consensus       426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~  505 (617)
T TIGR00955       426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT  505 (617)
T ss_pred             hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcc-cCCCC---CCCCccHHHHHhhhhCc
Q 016645          227 TGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF-DNQSP---DLPKIPGEYVLENVFQI  302 (385)
Q Consensus       227 ~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~-~~~~~---~~~~~~g~~~L~~~~g~  302 (385)
                      ++++++.++++++|++++.++||. +|+ |++|+||++|++++++.|||.+.++ +|...   +.|..+|+++|+. +|+
T Consensus       506 ~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~  582 (617)
T TIGR00955       506 VGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSF  582 (617)
T ss_pred             HHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCC
Confidence            999999999999999999999998 455 6999999999999999999999886 57542   2255789999998 999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       303 ~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                      +.++ .|.|+++|++++++|++++|+.|+++.+++
T Consensus       583 ~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       583 RNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             Cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8764 899999999999999999999999876654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.9e-49  Score=436.58  Aligned_cols=335  Identities=16%  Similarity=0.297  Sum_probs=297.8

Q ss_pred             CccCCCCCCcccccchHH--------------HHHHHHHHHhcCHHHHHHHHHHHhhhccc-----------------C-
Q 016645            2 KLKFETSDDPLEKITTAE--------------AIKNLIDFYQTSQHSYAAKEKVEGISKVK-----------------G-   49 (385)
Q Consensus         2 ~~~~~np~d~~~~~~~~~--------------~~~~l~~~~~~S~~~~~~~~~~~~~~~~~-----------------~-   49 (385)
                      .++..||+||+.++.+.+              ..+++++.|++|+.+++..++++....+.                 . 
T Consensus       309 ~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (1394)
T TIGR00956       309 CPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSK  388 (1394)
T ss_pred             CCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcc
Confidence            356789999998775532              24689999999998887777665432110                 0 


Q ss_pred             CccCCCCCCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHh
Q 016645           50 TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS  129 (385)
Q Consensus        50 ~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~  129 (385)
                      .......+..|+++|+++|++|++++++|||.+++.++++.+++|+++|++|+++++++++++++.|++|+++++.++++
T Consensus       389 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~  468 (1394)
T TIGR00956       389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSS  468 (1394)
T ss_pred             cccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            01113457889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 016645          130 IGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES  209 (385)
Q Consensus       130 ~~~~~~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~  209 (385)
                      +..++.+..||++|.||+.+++|++++|++|++++++|+.++.+++|++|+|||+|++.+++.|+.|++++++..+++.+
T Consensus       469 ~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~  548 (1394)
T TIGR00956       469 LLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH  548 (1394)
T ss_pred             HHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC--C--
Q 016645          210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P--  285 (385)
Q Consensus       210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~--~--  285 (385)
                      +++++++++||...|+.++++++.++++++|+++|.++||.  |..|++|+||++|+++|++.|||++.+++|..  |  
T Consensus       549 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g  626 (1394)
T TIGR00956       549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG  626 (1394)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCC
Confidence            99999999999999999999999999999999999999998  44569999999999999999999999999952  1  


Q ss_pred             -----------CC---------CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 016645          286 -----------DL---------PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPW  339 (385)
Q Consensus       286 -----------~~---------~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~  339 (385)
                                 .|         +..+|+++|+..+|++.++ +|+|+++|++++++|++++++++++.+.....
T Consensus       627 ~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~  699 (1394)
T TIGR00956       627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAKQK  699 (1394)
T ss_pred             CCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence                       12         3569999999668998775 99999999999999999999999998755443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.3e-48  Score=428.79  Aligned_cols=332  Identities=19%  Similarity=0.233  Sum_probs=293.6

Q ss_pred             ccCCCCCCcccccchHH----HHHHHHHHHhcCHHHHHHHHHHHhhhcccCCc--c-CCCCCCCCHHHHHHHHHHHHHHH
Q 016645            3 LKFETSDDPLEKITTAE----AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTV--L-DAGGSQASFLMQAFTLTKRSFVN   75 (385)
Q Consensus         3 ~~~~np~d~~~~~~~~~----~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~s~~~q~~~L~~R~~~~   75 (385)
                      ++..||||+.+++.+.+    ...++++.|++|+.+++..+.+++...+....  . .+..+++++++|+.+|++|++++
T Consensus      1126 p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 1205 (1470)
T PLN03140       1126 KEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205 (1470)
T ss_pred             CCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHH
Confidence            46789999999876543    12479999999999888776666544322111  1 13568899999999999999999


Q ss_pred             hhhChhHHHHHHHHHHHHHHHHHhhccccCCCc---hhhhhhhhHHHHHHHHHHHHhh-hhhhhHHhhhHHHHHHhhCCC
Q 016645           76 MSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGH  151 (385)
Q Consensus        76 ~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~---~~i~~~~~~l~~~~~~~~~~~~-~~~~~~~~e~~v~~rE~~~g~  151 (385)
                      +||||.+.+.|+++.+++|+++|++||+++++.   .+++++.|++|+.+.+.++..+ ..+|.+..||.+|.||+.+|+
T Consensus      1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140       1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred             HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999998765   4677789999988888777655 457899999999999999999


Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645          152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI  231 (385)
Q Consensus       152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~  231 (385)
                      |++.+|++|++++++|+.++.+++|.+|+|||+|++.+++.|++|++++++..++++++|+++++++||...|..+++++
T Consensus      1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140       1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC-CCccHHHHHhhhhCcccccchhh
Q 016645          232 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRRSKWI  310 (385)
Q Consensus       232 ~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~L~~~~g~~~~~~~w~  310 (385)
                      ++++++|||+++|.++||. +|+ |++|+||++|++++++.|||.+.+++|..++. ...++++++...||+++++ .|+
T Consensus      1366 ~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 1442 (1470)
T PLN03140       1366 YGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGP 1442 (1470)
T ss_pred             HHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccc
Confidence            9999999999999999998 577 69999999999999999999999988865542 2357888877779999875 999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          311 DLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       311 ~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                      +++++++|+++|++++++.+++.+.++
T Consensus      1443 ~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140       1443 VAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999987765

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.7e-47  Score=418.45  Aligned_cols=328  Identities=16%  Similarity=0.176  Sum_probs=287.6

Q ss_pred             ccCCCCCCcccccchH----HHHHHHHHHHhcCHHHHHHHHHHHhhhcccC---Cc---cCCCCCCCCHHHHHHHHHHHH
Q 016645            3 LKFETSDDPLEKITTA----EAIKNLIDFYQTSQHSYAAKEKVEGISKVKG---TV---LDAGGSQASFLMQAFTLTKRS   72 (385)
Q Consensus         3 ~~~~np~d~~~~~~~~----~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~s~~~q~~~L~~R~   72 (385)
                      ++..|||||.+++.+.    +..+++++.|++|+.+++..++++.......   ..   ....++++++++|+++|++|+
T Consensus      1008 p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~ 1087 (1394)
T TIGR00956      1008 PEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRT 1087 (1394)
T ss_pred             CCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHH
Confidence            4678999999986543    2345799999999888877766655433211   11   112468899999999999999


Q ss_pred             HHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhHHH-HHHhhCCC
Q 016645           73 FVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRERLNGH  151 (385)
Q Consensus        73 ~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~v~-~rE~~~g~  151 (385)
                      +++.||||.+++.|+++.+++|+++|++|+++++++.+++++.|.+|+.+.+..+.....+|.++.||.++ .||+.+|+
T Consensus      1088 ~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~ 1167 (1394)
T TIGR00956      1088 FQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRT 1167 (1394)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999888877777666788999999886 89999999


Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 016645          152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH-------YLFFVLCLYASVAVVESLMMAIASIVPNFLMG  224 (385)
Q Consensus       152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a  224 (385)
                      |++.+|++|++++++|+.++.+++|.+++||++|++.++..       |++|++++++..++++++|+++++++|+...|
T Consensus      1168 Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a 1247 (1394)
T TIGR00956      1168 FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNA 1247 (1394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHH
Confidence            99999999999999999999999999999999999987755       99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC-------------------
Q 016645          225 IITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP-------------------  285 (385)
Q Consensus       225 ~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~-------------------  285 (385)
                      ..++++++.++++|||+++|.++||. +|+ |++|+||++|++++++.|||.+.++.|...                   
T Consensus      1248 ~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~ 1325 (1394)
T TIGR00956      1248 AVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKP 1325 (1394)
T ss_pred             HHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHH
Confidence            99999999999999999999999999 687 599999999999999999999999888542                   


Q ss_pred             ----------------CC---CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645          286 ----------------DL---PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED  335 (385)
Q Consensus       286 ----------------~~---~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~  335 (385)
                                      .|   ...+|+++|+. +|++.+ +.|+|+++++++++++ +++++++++..|
T Consensus      1326 ~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956      1326 YLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred             HHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-ccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence                            12   24699999999 899876 4999999999999999 777777776543

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.9e-46  Score=385.92  Aligned_cols=264  Identities=18%  Similarity=0.293  Sum_probs=237.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHh-hhhhhh
Q 016645           57 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPS  135 (385)
Q Consensus        57 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~  135 (385)
                      +.++|++|+.+|++|++++ +||+.+...|+++.+++|+++|++|++++  ..+++++.|++|+++.+.++.+ +..++.
T Consensus       384 ~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~  460 (659)
T PLN03211        384 SISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFV  460 (659)
T ss_pred             cCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999998 89999999999999999999999999985  5789999999999988877655 468899


Q ss_pred             HHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645          136 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA  215 (385)
Q Consensus       136 ~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~  215 (385)
                      |+.||++|.||+.+|+|++.+|++||+++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..+++.++|++++
T Consensus       461 f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~  540 (659)
T PLN03211        461 FPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALG  540 (659)
T ss_pred             HHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc-----ccCCCCCC---
Q 016645          216 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSPDL---  287 (385)
Q Consensus       216 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~-----~~~~~~~~---  287 (385)
                      +++||...|+.+++++..+++++||++++  +||. +|+ |++|+||++|++++++.|||.+.+     ++|..+.|   
T Consensus       541 a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~  616 (659)
T PLN03211        541 AAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR  616 (659)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCC
Confidence            99999999999999999999999999997  7998 455 699999999999999999997653     46754432   


Q ss_pred             --CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645          288 --PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE  334 (385)
Q Consensus       288 --~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~  334 (385)
                        |...++++++      .. +.|.|+++|++++++|++++|+.|++.+
T Consensus       617 ~~c~~~~~~~~~------~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        617 ASCKFVEEDVAG------QI-SPATSVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             CCCccchhhhhc------cc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              3334444433      22 4899999999999999999999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=6.8e-46  Score=407.32  Aligned_cols=331  Identities=14%  Similarity=0.218  Sum_probs=288.5

Q ss_pred             ccCCCCCCcccccchHH----------------HHHHHHHHHhcCHHHHHHHHHHHhhhccc--C-CccCCCCCCCCHHH
Q 016645            3 LKFETSDDPLEKITTAE----------------AIKNLIDFYQTSQHSYAAKEKVEGISKVK--G-TVLDAGGSQASFLM   63 (385)
Q Consensus         3 ~~~~np~d~~~~~~~~~----------------~~~~l~~~~~~S~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~s~~~   63 (385)
                      ++.+|||||+.++.+.+                .+++++++|++|+.++...++++......  . ......++..+++.
T Consensus       437 P~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~  516 (1470)
T PLN03140        437 PERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKME  516 (1470)
T ss_pred             CCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHH
Confidence            56789999999876531                14678999999988877776665432211  1 11123568899999


Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCc---hhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhh
Q 016645           64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFVEDM  140 (385)
Q Consensus        64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~---~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~  140 (385)
                      |+..+++|+++.++||+..+..++++.+++|+++|++|++++.++   .+.+.+.|.+|+.+++.++.++..++.++.||
T Consensus       517 q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r  596 (1470)
T PLN03140        517 LLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRL  596 (1470)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999997543   34566788888888888888888899999999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016645          141 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN  220 (385)
Q Consensus       141 ~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~  220 (385)
                      ++|.|||..++|++++|++|++++++|+.++.+++|++|+|||+|+++++++|+.|++++++..+++.+++.++++++|+
T Consensus       597 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~  676 (1470)
T PLN03140        597 PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT  676 (1470)
T ss_pred             chhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCC-CCCCCCccHHHHHhhh
Q 016645          221 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQ-SPDLPKIPGEYVLENV  299 (385)
Q Consensus       221 ~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~-~~~~~~~~g~~~L~~~  299 (385)
                      ...|+.++++++.++++++||++|.++||+ +|+ |++|+||++|+++|++.|||.+..+.+. ..+.+..+|+++|+. 
T Consensus       677 ~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-  753 (1470)
T PLN03140        677 MIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-  753 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-
Confidence            999999999999999999999999999998 455 6999999999999999999988776532 123356899999987 


Q ss_pred             hCccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645          300 FQIDVRR-SKWIDLSVIFSMIISYRIIFFVMIKISEDV  336 (385)
Q Consensus       300 ~g~~~~~-~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~  336 (385)
                      +|++.++ ++|.++++|++++++|+++++++|++.+..
T Consensus       754 ~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~  791 (1470)
T PLN03140        754 FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPL  791 (1470)
T ss_pred             cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            9997653 479999999999999999999999987643

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-45  Score=371.95  Aligned_cols=276  Identities=30%  Similarity=0.523  Sum_probs=262.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhH
Q 016645           58 QASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSF  136 (385)
Q Consensus        58 ~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~  136 (385)
                      .++||.|++.|++|.+++.+|||.+...|+++.+++++++|++|++++.+..+++++.|+++++..++.+.++. +++.|
T Consensus       333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f  412 (613)
T KOG0061|consen  333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF  412 (613)
T ss_pred             CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999888876 79999


Q ss_pred             HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645          137 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS  216 (385)
Q Consensus       137 ~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~  216 (385)
                      +.|+++|.||+.+|+|+.++|++|++++++|+.++.+++|.+++|||+|++++..+|++|++++++..++++++|+++++
T Consensus       413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~  492 (613)
T KOG0061|consen  413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA  492 (613)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--CCCCccHHH
Q 016645          217 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP--DLPKIPGEY  294 (385)
Q Consensus       217 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~  294 (385)
                      ++||...|..+++++..++++++|++++.+++|.  |.+|++|+|+++|++|+++.|||.+....|...  .||..+|++
T Consensus       493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~  570 (613)
T KOG0061|consen  493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGED  570 (613)
T ss_pred             hccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHH
Confidence            9999999999999999999999999999999998  344699999999999999999999855667654  578899999


Q ss_pred             HHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          295 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       295 ~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                      +++. .+++.+ +.|.|+.++++++++|++++|+.|+++.+..
T Consensus       571 ~l~~-~~~~~~-~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~  611 (613)
T KOG0061|consen  571 VLKQ-LGFEDS-SFWLDLLVLLAFIVFFRVLGYLALRFRVKRK  611 (613)
T ss_pred             HHHh-cCCccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999 899776 4999999999999999999999999988765

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-42  Score=358.38  Aligned_cols=341  Identities=16%  Similarity=0.287  Sum_probs=300.4

Q ss_pred             ccCCCCCCcccccchH----------------HHHHHHHHHHhcCHHHHHHHHHHHhhhcccCC---ccCCCCCCCCHHH
Q 016645            3 LKFETSDDPLEKITTA----------------EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT---VLDAGGSQASFLM   63 (385)
Q Consensus         3 ~~~~np~d~~~~~~~~----------------~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~   63 (385)
                      ++-+++|||+-++.+.                ....++.+.|++|+.++.+..+++....+...   ....+.+..+.|.
T Consensus       361 P~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~  440 (1391)
T KOG0065|consen  361 PPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWE  440 (1391)
T ss_pred             CCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHH
Confidence            4557778887766651                13489999999999999988888765443321   2236789999999


Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccC-CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhHH
Q 016645           64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV  142 (385)
Q Consensus        64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~v  142 (385)
                      |+..+++|.+..+.||..++....++.+++++++|++|++.+ .+..+...|.+++|+.+++.++.++..++...+.+++
T Consensus       441 qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv  520 (1391)
T KOG0065|consen  441 QVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPV  520 (1391)
T ss_pred             HHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcch
Confidence            999999999999999999999999999999999999999998 6677889999999999999999999999999999999


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 016645          143 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL  222 (385)
Q Consensus       143 ~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~  222 (385)
                      |.|+|....|.+++|.++.++.++|+.++.+++|.+|.||+.|+++++++|+.+++.++++..++.++..++++++++..
T Consensus       521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~  600 (1391)
T KOG0065|consen  521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS  600 (1391)
T ss_pred             HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC------------CCC---
Q 016645          223 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS------------PDL---  287 (385)
Q Consensus       223 ~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~------------~~~---  287 (385)
                      .|+.+|++.+....+.+||++|.++||+  |..|++|+||+.|++++++.|||++++++|.+            ..|   
T Consensus       601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~  678 (1391)
T KOG0065|consen  601 IANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAAT  678 (1391)
T ss_pred             HHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhh
Confidence            9999999999999999999999999998  55579999999999999999999999999982            222   


Q ss_pred             ------CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhhh
Q 016645          288 ------PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLAR  346 (385)
Q Consensus       288 ------~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~~~~~~~~  346 (385)
                            ....|.++++..|++++.+ +|++++|+++|.++|.++..+++.+.+..+..--.+..+
T Consensus       679 ~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~  742 (1391)
T KOG0065|consen  679 GATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFK  742 (1391)
T ss_pred             ccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeec
Confidence                  2345666665556666654 999999999999999999999999988776554333333

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.6e-41  Score=351.97  Aligned_cols=333  Identities=17%  Similarity=0.199  Sum_probs=291.2

Q ss_pred             CccCCCCCCcccccchH----HHHHHHHHHHhcCHHHHHHHHHHHhhhcccCC-c---cCCCCCCCCHHHHHHHHHHHHH
Q 016645            2 KLKFETSDDPLEKITTA----EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT-V---LDAGGSQASFLMQAFTLTKRSF   73 (385)
Q Consensus         2 ~~~~~np~d~~~~~~~~----~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~s~~~q~~~L~~R~~   73 (385)
                      +++++||||+.++..+.    +.-.++++.|++|+.++++.++++++..+... .   ..+.++++|+|.|++.+++|++
T Consensus      1035 ~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~ 1114 (1391)
T KOG0065|consen 1035 CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQF 1114 (1391)
T ss_pred             CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHH
Confidence            56778999999987664    23468999999999999999999887665433 2   2266789999999999999999


Q ss_pred             HHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhHHhhhHHHHHHhhCCCC
Q 016645           74 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHY  152 (385)
Q Consensus        74 ~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~e~~v~~rE~~~g~Y  152 (385)
                      ..+||+|.|++.|+++.++.|+++|+.||+++++..++++..+.+|+.+.+......+ ..+.+..||.+++||+.+++|
T Consensus      1115 ~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mY 1194 (1391)
T KOG0065|consen 1115 LSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMY 1194 (1391)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcc
Confidence            9999999999999999999999999999999999999999999999988877666555 345566788888999999999


Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016645          153 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQ  232 (385)
Q Consensus       153 ~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~  232 (385)
                      ++.+|++|++++|+|+.++++.+|.++.|+++|+..++.++++|++..++..+....+|+++.+++||...|..+.++++
T Consensus      1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC------CCCccHHHHHhhhhC----c
Q 016645          233 GIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD------LPKIPGEYVLENVFQ----I  302 (385)
Q Consensus       233 ~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~------~~~~~g~~~L~~~~g----~  302 (385)
                      +...+|||++.|.+.||. ||+ |++|+||.+|.++++...++++.+-.|...+      .+-.+..++++..+|    +
T Consensus      1275 s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy 1352 (1391)
T KOG0065|consen 1275 SFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGY 1352 (1391)
T ss_pred             HHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcce
Confidence            999999999999999999 788 5999999999999999999999999997654      133566777777788    5


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       303 ~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                      .++. ......+.+.+.+.+..++...+++..+++
T Consensus      1353 ~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1353 LHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred             eccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence            5442 333445666788889999988888876654

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.90  E-value=4.9e-25  Score=196.60  Aligned_cols=208  Identities=23%  Similarity=0.337  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHhhhChhHH-HHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhhh-hhhHHhhh
Q 016645           63 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGG-FPSFVEDM  140 (385)
Q Consensus        63 ~q~~~L~~R~~~~~~Rd~~~~-~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~e~  140 (385)
                      +|++.+++|+++..+||+... ...++.+++.++++|.+|.+++++.++. ++.+.++..+....+....+ .....+|+
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 9999999999999999999988544555 67777777766666554444 47789999


Q ss_pred             HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016645          141 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN  220 (385)
Q Consensus       141 ~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~  220 (385)
                      +.+.||+.++.|++..|++++.+.+++..++.++++.++++++.|++.+  ++..+.+.+++...++.++|.+++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999877  67888888889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhh
Q 016645          221 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL  275 (385)
Q Consensus       221 ~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef  275 (385)
                      .+.+..+.+.+..+++++||.+.|.+++|+  |.+|+.+++|.+|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999996  56679999999999999998775

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.74  E-value=9.6e-16  Score=141.28  Aligned_cols=236  Identities=9%  Similarity=-0.001  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-----hHHHHHHHHHHHHhhhhh-hhHH
Q 016645           65 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-----SCASFVFGFVTFMSIGGF-PSFV  137 (385)
Q Consensus        65 ~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-----~~l~~~~~~~~~~~~~~~-~~~~  137 (385)
                      ...+++|+++.++|+ |......++++++..+++|..+....++..+. +..     |++.+..+..+..  .+. ..+.
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~y~~f~~pg~l~~~~~~~~~~--~~~~~~~~   83 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-SYAAFLAAGMVATSAMTASTF--ETIYATFA   83 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            566779999999999 99999999999999999999976432211111 111     2221111111111  111 1222


Q ss_pred             --hhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645          138 --EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA  215 (385)
Q Consensus       138 --~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~  215 (385)
                        +|++.+.|-+.... ++..+++||++.+....+++.++...+.++ .|..+. .........+++..+...++|++++
T Consensus        84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a  160 (253)
T TIGR01291        84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA  160 (253)
T ss_pred             HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              24444555555554 899999999999987777777766655544 344333 3455555666667777889999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHH
Q 016645          216 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYV  295 (385)
Q Consensus       216 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~  295 (385)
                      .+.++.+.+..+.+.+..|++++||.+.|.+.+|+  |.+++.+++|.+|+.|++....+                    
T Consensus       161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~--------------------  218 (253)
T TIGR01291       161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVML--------------------  218 (253)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHh--------------------
Confidence            99999999999999999999999999999999998  66679999999999999765432                    


Q ss_pred             HhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645          296 LENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE  334 (385)
Q Consensus       296 L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~  334 (385)
                           |-+.. +.|.++++++++.+++..++...+|++.
T Consensus       219 -----g~~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~~  251 (253)
T TIGR01291       219 -----GGPGT-QVGLHLGALCLYAVVPFFISAALLRRRL  251 (253)
T ss_pred             -----CCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                 11111 2567899999999999999988777654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.73  E-value=1.2e-15  Score=139.24  Aligned_cols=226  Identities=12%  Similarity=0.110  Sum_probs=163.5

Q ss_pred             HHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CCC--chhhhhh----hhHHHHHHHHHHHHhhhhhhh-HHhhhHH
Q 016645           71 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSILAR----GSCASFVFGFVTFMSIGGFPS-FVEDMKV  142 (385)
Q Consensus        71 R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~~--~~~i~~~----~~~l~~~~~~~~~~~~~~~~~-~~~e~~v  142 (385)
                      |+++...|||..+...+++++++.+++|.++... +.+  .++....    .|.+.+.....+..  .+... ..+|+++
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~   78 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF   78 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence            7788999999999999999999999999987543 111  1111111    12222222221111  11111 2233344


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 016645          143 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL  222 (385)
Q Consensus       143 ~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~  222 (385)
                      +.|=+... .+...|+++|.+.+++..+++.++...+.+++.+.+.  ..+....+..++...+..++|.+++...++.+
T Consensus        79 ~~~~~~~P-~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~  155 (236)
T TIGR01247        79 LKEILVAP-ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME  155 (236)
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            44444444 4889999999999999999999999999888877553  34454555566667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCc
Q 016645          223 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQI  302 (385)
Q Consensus       223 ~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~  302 (385)
                      .+..+.+.+..+++++||.+.|.+.+|+  |.+|+.+++|.+|+.|++.....                         |-
T Consensus       156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~-------------------------~~  208 (236)
T TIGR01247       156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLA-------------------------GV  208 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHh-------------------------CC
Confidence            9999999999999999999999999998  56679999999999999765322                         11


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHH
Q 016645          303 DVRRSKWIDLSVIFSMIISYRIIFFV  328 (385)
Q Consensus       303 ~~~~~~w~~~~iL~~~~i~~~~l~~~  328 (385)
                      ....+.+.++++|+++++++..++..
T Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       209 SPTFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHH
Confidence            11113778999999999999888754

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.69  E-value=1.5e-14  Score=133.50  Aligned_cols=235  Identities=10%  Similarity=0.041  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CC------Cch-hh--hhhhhHHHHHHHHHHHHhhh
Q 016645           62 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT------GYN-SI--LARGSCASFVFGFVTFMSIG  131 (385)
Q Consensus        62 ~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~------~~~-~i--~~~~~~l~~~~~~~~~~~~~  131 (385)
                      ++++..+++|+++...|||..+...+++++++.+++|.+|... +.      +.. +.  .-..|++.+......   +.
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~---~~   77 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNG---MQ   77 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHH---HH
Confidence            3678999999999999999999999999999999999998542 11      100 10  111122211111111   11


Q ss_pred             hhhhH--HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 016645          132 GFPSF--VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES  209 (385)
Q Consensus       132 ~~~~~--~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~  209 (385)
                      +....  -+|++...+-+.... +...+.+++++......+++.++..++.+. .|.+.+...++.....+++......+
T Consensus        78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~  155 (253)
T TIGR03861        78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA  155 (253)
T ss_pred             hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            11122  333345555555554 888999999999988888877666555543 36655544455444555666677889


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCC---CccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC
Q 016645          210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI---PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD  286 (385)
Q Consensus       210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l---p~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~  286 (385)
                      +|+++|.+.++.+.+..+.+.+..+++++||.+.|.+.+   |+  |.+|+.++||.+|..|++...-.           
T Consensus       156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~-----------  222 (253)
T TIGR03861       156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALY-----------  222 (253)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHh-----------
Confidence            999999999999999999999999999999999999777   54  67779999999999999865211           


Q ss_pred             CCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016645          287 LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI  332 (385)
Q Consensus       287 ~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~  332 (385)
                                    |   +. -|.++.++.++.+++..++....|+
T Consensus       223 --------------g---~~-~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       223 --------------G---QL-NLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             --------------C---Cc-chhHHHHHHHHHHHHHHHHHHHhhc
Confidence                          1   11 3566778888888888888776654

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.69  E-value=9.4e-15  Score=133.02  Aligned_cols=223  Identities=14%  Similarity=0.065  Sum_probs=149.7

Q ss_pred             hhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhh-hhhHHHHHHHHHHHHhhhhhhhHHhh--hHHHHHHhhCCCCc
Q 016645           77 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVED--MKVFQRERLNGHYG  153 (385)
Q Consensus        77 ~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~e--~~v~~rE~~~g~Y~  153 (385)
                      +|||......+.+++++-++++.++.+.. +.+..+. ..+.+.+.....+..  .......+|  .+.+.|-+.... +
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~er~~G~l~rl~~~P~-~   77 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFT--GQAIAVARDRRYGALKRLGATPL-P   77 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHH--HHHHHHHHHHHhCHHHHHhcCCC-c
Confidence            69999999999999999999998886521 1112211 122222222111111  222223333  345556565555 9


Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHH
Q 016645          154 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP---NFLMGIITGAG  230 (385)
Q Consensus       154 ~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~---~~~~a~~~~~~  230 (385)
                      +..|+++|.+...+..+++..++. +++++.|++..... ...++...+....+.+++.+++.+.+   +.+.+..+++.
T Consensus        78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~  155 (232)
T TIGR00025        78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL  155 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            999999998888888777655555 44566788765332 23334444444555667777777764   45555888888


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhh
Q 016645          231 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI  310 (385)
Q Consensus       231 ~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~  310 (385)
                      +..+++++||.+.|.+.+|+  |.+|+++++|.+|+.+++......+                        .+.+ ..|.
T Consensus       156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~------------------------~~~~-~~~~  208 (232)
T TIGR00025       156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS------------------------VDTF-GAVR  208 (232)
T ss_pred             HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC------------------------CChh-hHHH
Confidence            99999999999999999998  7777999999999999986643221                        1111 3788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 016645          311 DLSVIFSMIISYRIIFFVMIKI  332 (385)
Q Consensus       311 ~~~iL~~~~i~~~~l~~~~L~~  332 (385)
                      ++++++++++++..++...+|+
T Consensus       209 ~~~~l~~~~~v~~~la~~~~~r  230 (232)
T TIGR00025       209 DLVVVLAFWVALAALAAIRLRR  230 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999998888776553

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.62  E-value=5.2e-13  Score=123.47  Aligned_cols=242  Identities=12%  Similarity=0.145  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHhhhChhH-HHHHHHHHHHHHHHHHhhcccc-CCCchhhhhhhhHHHHHHHHHHHH----hhh-hh
Q 016645           61 FLMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFM----SIG-GF  133 (385)
Q Consensus        61 ~~~q~~~L~~R~~~~~~Rd~~~-~~~~~~~~i~~~l~~G~if~~~-~~~~~~i~~~~~~l~~~~~~~~~~----~~~-~~  133 (385)
                      .++-++.+++|+.+...||+.. ...-+++.++..+++|.++... ++. ++. +  ...|+..+...+.    +.. +.
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~   81 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVA   81 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999865 3444455556666666655321 111 111 1  1112222222111    111 11


Q ss_pred             hhHHhhh--HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 016645          134 PSFVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLM  211 (385)
Q Consensus       134 ~~~~~e~--~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg  211 (385)
                      ....+++  +...|=+... .+...+.+++++......+++.++...+.+...|.++.  ........+++........|
T Consensus        82 ~~i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~g  158 (257)
T PRK15066         82 SSFFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGG  158 (257)
T ss_pred             HHHHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHH
Confidence            2233333  2222223333 48899999999988877777766666666655566543  23333333334344444558


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcc
Q 016645          212 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIP  291 (385)
Q Consensus       212 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~  291 (385)
                      ++++.+.++.+....+.+.+..|++++||.+.|.+.+|+  |.+|+.++||++|..|++...-+                
T Consensus       159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~----------------  220 (257)
T PRK15066        159 LINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL----------------  220 (257)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc----------------
Confidence            889988999999999999999999999999999999998  77779999999999999875322                


Q ss_pred             HHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          292 GEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       292 g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                               |.+. ...|.++++++++.+++..++....|+.++.+
T Consensus       221 ---------g~~~-~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~  256 (257)
T PRK15066        221 ---------GISD-VPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR  256 (257)
T ss_pred             ---------CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence                     1111 13688999999999999999998888766543

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.59  E-value=5.3e-14  Score=125.88  Aligned_cols=152  Identities=9%  Similarity=0.051  Sum_probs=126.1

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645          152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI  231 (385)
Q Consensus       152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~  231 (385)
                      -+...++++|.+..++..++++++...+.+++.|++++  ++..+++.+++...++.++|+.+++++++...  .++...
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence            47788899999999999999999999999999998864  57778888888899999999999999987644  344455


Q ss_pred             HHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhhh
Q 016645          232 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID  311 (385)
Q Consensus       232 ~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~~  311 (385)
                      ..++++++|.+.|.+.+|+  |.+|+++++|.+|+.+++....+.+                         .. .+.|.+
T Consensus       133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------------~~-~~~~~~  184 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------------ND-GTLWQA  184 (208)
T ss_pred             HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------------cH-HHHHHH
Confidence            5677778999999999998  5667999999999999997655422                         11 237889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 016645          312 LSVIFSMIISYRIIFFVMIKISED  335 (385)
Q Consensus       312 ~~iL~~~~i~~~~l~~~~L~~~~~  335 (385)
                      +++|+++.+++.+++....|+++|
T Consensus       185 ~~~L~~~~~v~~~la~~~~~~~~~  208 (208)
T TIGR03062       185 VAVLLLILVVFLALSLLSARRKRR  208 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999999999988887654

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.22  E-value=3.8e-10  Score=95.65  Aligned_cols=132  Identities=11%  Similarity=-0.009  Sum_probs=101.6

Q ss_pred             hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHH---HHHHHHHHHHHHHHHHH
Q 016645          135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYL---FFVLCLYASVAVVESLM  211 (385)
Q Consensus       135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~---~~~l~l~l~~~~~~~lg  211 (385)
                      ..-+|+..+.|-+.... +...|+++|++......+++.++..++.+. .|++... .+.   .+.+...+.......++
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~   89 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV   89 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788887777 999999999999999999998888888854 4887763 333   23333344455566666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHH
Q 016645          212 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQ  272 (385)
Q Consensus       212 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~  272 (385)
                      ..++...++.+..+ ..+.+..|++++||.+.|.+++|+  |.+|+.+++|.+|+.+++..
T Consensus        90 ~~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~  147 (152)
T TIGR01248        90 MAMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD  147 (152)
T ss_pred             HHHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence            77766666665444 457788999999999999999998  88899999999999999864

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.22  E-value=2.3e-09  Score=99.55  Aligned_cols=170  Identities=13%  Similarity=0.203  Sum_probs=124.9

Q ss_pred             hhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 016645          138 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-S  216 (385)
Q Consensus       138 ~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~-~  216 (385)
                      ++.+.+.|-..+.. +...+++++.+.......+...+...+..+..|.. ....+......+.+......++|.+++ .
T Consensus       115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~  192 (286)
T COG0842         115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF  192 (286)
T ss_pred             HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555 44566666666666665555555555555566633 334566666777777777888888666 3


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHH
Q 016645          217 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVL  296 (385)
Q Consensus       217 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L  296 (385)
                      ..++...+..++..+..++.+++|.+.|.+.+|+  |.+++.+++|.+|+.+++......+                   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~-------------------  251 (286)
T COG0842         193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG-------------------  251 (286)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC-------------------
Confidence            6677888888898999999999999999999998  6777999999999999987644322                   


Q ss_pred             hhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645          297 ENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV  336 (385)
Q Consensus       297 ~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~  336 (385)
                           ...+ +.|.++++++++.+++.+++...+|++++.
T Consensus       252 -----~~~~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~  285 (286)
T COG0842         252 -----WRND-GIWISLLILLLFAVVFLLLGLLLLRRRRKL  285 (286)
T ss_pred             -----Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                 1111 378999999999999999999988887654

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.98  E-value=3.4e-07  Score=84.32  Aligned_cols=237  Identities=13%  Similarity=0.088  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhh-----hhhh
Q 016645           61 FLMQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-----GGFP  134 (385)
Q Consensus        61 ~~~q~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-----~~~~  134 (385)
                      .++..+.|.+|+++...|+ .......++.++++.++++.+|...-...  ..+  -..+...+...+...     .+..
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~--~~~~l~~G~~~w~f~~~~i~~~~~   91 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLN--FLAYLLAGLILWFFFSEAISEGAG   91 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4677888999999986664 44577788888888888888886543221  011  111222222222111     1233


Q ss_pred             hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016645          135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI  214 (385)
Q Consensus       135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i  214 (385)
                      .+.+..+++.+-    ..++..+.+++++.++....+..++....+-+..+.+  ..++..+...+.+..+.+.++|+.+
T Consensus        92 s~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~  165 (263)
T COG1682          92 SVVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLIL  165 (263)
T ss_pred             HhhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444332    1388999999999998777666655555554444433  4566666667777777788899999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHH
Q 016645          215 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEY  294 (385)
Q Consensus       215 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~  294 (385)
                      |.+..-...-..+-..+..+++..+|.+.|.+.+|+. +++ +.++||+.|..|.....-+.+..               
T Consensus       166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~R~~~~~~~~---------------  228 (263)
T COG1682         166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESFRAPLLGGDV---------------  228 (263)
T ss_pred             HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHHHHHHhCCCc---------------
Confidence            9987777777777788889999999999999999983 554 99999999999998775553311               


Q ss_pred             HHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645          295 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV  336 (385)
Q Consensus       295 ~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~  336 (385)
                                  ..+.+....++..++..+++++..++.+++
T Consensus       229 ------------~~~~~~~~~~~~~li~l~vg~~~~~~~~~~  258 (263)
T COG1682         229 ------------PDLHLLVYILLLTLILLFVGLLLFRKFRKR  258 (263)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                        134455566666666666777666665543

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.88  E-value=1.6e-06  Score=79.17  Aligned_cols=220  Identities=13%  Similarity=0.130  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccc----cCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhH
Q 016645           66 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLN----VGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMK  141 (385)
Q Consensus        66 ~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~----~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~  141 (385)
                      +.+.||+++...|.|..+..-.+..++.|+.. ..+.+    ...+..+.+...+...+  .+.......+.       .
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l~~-------~   71 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAITM-------R   71 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHHHH-------H
Confidence            46889999999999999977777766666432 22211    11122222222211111  11111111122       3


Q ss_pred             HHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHH--hhhhhhccccc---cchhHHHHHHHHHHHHHHHHH
Q 016645          142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFIS--GTICYFMVRLH---PGFIHYLFFVLCLYASVAVVE  208 (385)
Q Consensus       142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~--~~i~y~~~g~~---~~~~~f~~~~l~l~l~~~~~~  208 (385)
                      .+.+||++|.        -+...++++|.+..+...++..+..  ..+.....|.+   .+.+.+....+..++...+..
T Consensus        72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  151 (240)
T TIGR03518        72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT  151 (240)
T ss_pred             HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence            4445555554        3789999999999876544333211  11111122222   234445545555566667888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCC--CccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC
Q 016645          209 SLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI--PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD  286 (385)
Q Consensus       209 ~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l--p~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~  286 (385)
                      ++|++++++.++...|..++..+...+.+..+.   ..++  |+  |.+|+.++||.+|-.+.. .              
T Consensus       152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~---l~~~~~~~--~~~~l~~~sp~~~~~~~~-~--------------  211 (240)
T TIGR03518       152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDG---LASLLWGG--SAYTISELGLSYHYESIS-R--------------  211 (240)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH---Hhhhcchh--HHHHHHHcCHHHHHHHHH-c--------------
Confidence            999999999999888876665543333221122   2233  44  566799999988765432 1              


Q ss_pred             CCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016645          287 LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKIS  333 (385)
Q Consensus       287 ~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~  333 (385)
                                    |.    =.+.|+...+.+++++..++...+++|
T Consensus       212 --------------g~----i~~~~~v~~~~~~~~~l~l~~~~~~~r  240 (240)
T TIGR03518       212 --------------GV----IDSRDVIYFLSITVLFLALTKLQLKSR  240 (240)
T ss_pred             --------------Cc----ccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence                          10    035678899999999988888766543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=98.72  E-value=7.4e-06  Score=75.81  Aligned_cols=239  Identities=9%  Similarity=0.037  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCC-chhhhhhhhHHHHHHHHHHHHhhhhhhhHHhh-
Q 016645           63 MQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTG-YNSILARGSCASFVFGFVTFMSIGGFPSFVED-  139 (385)
Q Consensus        63 ~q~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~-~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e-  139 (385)
                      .-++.|++|+++...|+ ...+...++.+++..+++..+|-.+... ..+   ..+..|..++...+..+.....-... 
T Consensus        19 ~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~a   95 (264)
T PRK15176         19 ELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMRT   95 (264)
T ss_pred             HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677899999987665 4456778888888888888877543211 111   01224555444444433221110000 


Q ss_pred             hHHHHH-HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhh-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016645          140 MKVFQR-ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYF-MVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASI  217 (385)
Q Consensus       140 ~~v~~r-E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~-~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~  217 (385)
                      ..+-.. ..-.+. .....+++....++...++..++...+.+. ..+..+.  ........+++..+.+.++|+++|++
T Consensus        96 ~si~~~~~li~kv-~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~ll~~l~~~glglils~l  172 (264)
T PRK15176         96 HSFSTSLAVVSQV-KKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQ--KPFLIFEGMVIAWLLGLSFGYFCDAL  172 (264)
T ss_pred             HHHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111 111112 222233333333433322222222121122 1233332  22222333344555566788888877


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHh
Q 016645          218 VPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE  297 (385)
Q Consensus       218 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~  297 (385)
                      ..-......+.+.+..+++..+|.+.|.+.+|+. ++ ++.++||+.+..|+....-+.+.                   
T Consensus       173 ~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~-~~-~il~~NPl~~~ie~~R~~~~~~~-------------------  231 (264)
T PRK15176        173 SERFPLVYKAVPVMLRPMFLISAVFYTANELPYS-LL-SIFSWNPLLHANEIVREGMFEGY-------------------  231 (264)
T ss_pred             HHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHH-HH-HHHHHCcHHHHHHHHHHHHhcCc-------------------
Confidence            5444445556667888899999999999999983 44 48899999999999877555321                   


Q ss_pred             hhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645          298 NVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV  336 (385)
Q Consensus       298 ~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~  336 (385)
                           .   ..|.++..++++.++..+++++..|+.+..
T Consensus       232 -----~---~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~  262 (264)
T PRK15176        232 -----H---SLYLEPFYPLAFSATLFLAGLIFHLICDTE  262 (264)
T ss_pred             -----C---ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 0   123455778888888888887777766543

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.65  E-value=1e-05  Score=75.20  Aligned_cols=167  Identities=15%  Similarity=0.199  Sum_probs=94.9

Q ss_pred             HHHHHhhCCC--------CchHHHHHHHHHHHhhHHH---HHHHHHhh---hhhhccccccchhHHHHHHHHHHHHHH--
Q 016645          142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLI---MITFISGT---ICYFMVRLHPGFIHYLFFVLCLYASVA--  205 (385)
Q Consensus       142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~---i~~~i~~~---i~y~~~g~~~~~~~f~~~~l~l~l~~~--  205 (385)
                      .+.+|+++|.        ++...++++|.+......+   +...+...   ......|.+.+...+....+......+  
T Consensus        89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (277)
T PF12679_consen   89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV  168 (277)
T ss_pred             HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            4455555554        5889999999999887632   21111111   112224455555554444433333333  


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc-CCCCCCccccc--cccccccHHHHHHHHHHHHhhCCCccc
Q 016645          206 -VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFR-LPNDIPKPVWR--YPMSYLSFHYWALQGQYQNDLKGLWFD  281 (385)
Q Consensus       206 -~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~lp~~~w~--~~l~~isp~~y~~~al~~nef~~~~~~  281 (385)
                       +..++++++|+++++...|..++..+.....+...... ..++.....|.  ..+.+++|..+- +.+......+    
T Consensus       169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~----  243 (277)
T PF12679_consen  169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGG----  243 (277)
T ss_pred             HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhcc----
Confidence             45899999999999999998888876655544333322 11121110011  114666666533 2222211110    


Q ss_pred             CCCCCCCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016645          282 NQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKIS  333 (385)
Q Consensus       282 ~~~~~~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~  333 (385)
                                        -+.+  ...|.++++++++++++.+++++.++++
T Consensus       244 ------------------~~~~--~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  244 ------------------GFVW--LSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             ------------------ccch--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                              0000  2378999999999999999999766655

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.55  E-value=1.1e-07  Score=74.67  Aligned_cols=62  Identities=11%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CCCCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhhhh
Q 016645          285 PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARR  347 (385)
Q Consensus       285 ~~~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~~~~~~~~~  347 (385)
                      +|....+|++||+..||+..++ +|+|++|+++|+++|.++.++++.+.+..+.....+..+|
T Consensus        26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r   87 (103)
T PF06422_consen   26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKR   87 (103)
T ss_pred             CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeC
Confidence            3457789999999769999886 9999999999999999999999999888877755444443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.45  E-value=3.4e-08  Score=93.97  Aligned_cols=158  Identities=20%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             hHHhhhHH--HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc---cccchhHHHHHHHHHHHHHHHHHH
Q 016645          135 SFVEDMKV--FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR---LHPGFIHYLFFVLCLYASVAVVES  209 (385)
Q Consensus       135 ~~~~e~~v--~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g---~~~~~~~f~~~~l~l~l~~~~~~~  209 (385)
                      ...+||+-  ..|-+..|. +...|+++|++..+...++..++...+   ..|   ++..  ++...++.+++..++..+
T Consensus       181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~  254 (344)
T PF12698_consen  181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFIS  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHH
Confidence            34555544  444456665 999999999999999988888776664   344   4433  555566778888888999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCC
Q 016645          210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPK  289 (385)
Q Consensus       210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~  289 (385)
                      ++.+++.++++...+..++.++..+++.++|.+.|.+.+|+  |..++.++.|..|..+++....               
T Consensus       255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~P~~~~~~~~~~~~---------------  317 (344)
T PF12698_consen  255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS--FLQWISSFLPFYWFIQGLRNII---------------  317 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHHHHhhHHHHHHHHHHHH---------------
Confidence            99999999999999988888888877788888888888887  4445888999999888865422               


Q ss_pred             ccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHH
Q 016645          290 IPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFF  327 (385)
Q Consensus       290 ~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~  327 (385)
                                +|- . .+.|.++++++++++++.++++
T Consensus       318 ----------~~~-~-~~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  318 ----------YGD-W-SEIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             --------------------------------------
T ss_pred             ----------Hhc-H-HHHHHHHHHHHHHHHHHHHHHh
Confidence                      111 1 1367888899999988887765

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=97.97  E-value=0.00071  Score=60.66  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhh-hhhHHHHHHHHHHHHhhhhhhhHHhhhHHH
Q 016645           65 AFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMKVF  143 (385)
Q Consensus        65 ~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~v~  143 (385)
                      ++.+.||+++.-+|++.....-+...+....++...+   +.+.+.... ..|.+.....+.+..+.   .      +.|
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al---~~~~~~l~~~~~gllWi~~lfa~~l~~---~------r~f   68 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFAL---GPDPDLLARVAPGLLWIALLFASLLGL---N------RSF   68 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhc---CCchhHHHHHhHHHHHHHHHHHHHHHh---h------HhH
Confidence            3678999999999999887766666666655555543   333333332 33444433333332222   1      256


Q ss_pred             HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645          144 QRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA  215 (385)
Q Consensus       144 ~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~  215 (385)
                      .+|+++|.        .++..++++|.+....+..+..++...+...+.|.+.  ..+..+.+.+.+.......+|.+.+
T Consensus        69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a  146 (215)
T PF03379_consen   69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA  146 (215)
T ss_pred             HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            67777766        2678899999999988887777777777777777764  4566677777777788888888888


Q ss_pred             HhcCChHHHHHHHHHHHHHHH
Q 016645          216 SIVPNFLMGIITGAGIQGIFM  236 (385)
Q Consensus       216 ~~~~~~~~a~~~~~~~~~~~~  236 (385)
                      ++.-+........++...|+.
T Consensus       147 al~~~~r~~~~Ll~lL~lPl~  167 (215)
T PF03379_consen  147 ALAAGARGREILLPLLLLPLL  167 (215)
T ss_pred             HHHHhccccCHHHHHHHHHHH
Confidence            876555545555555555544

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=97.93  E-value=0.0033  Score=58.52  Aligned_cols=249  Identities=14%  Similarity=0.192  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcc-cc---CCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhh
Q 016645           64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL-NV---GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED  139 (385)
Q Consensus        64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~-~~---~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e  139 (385)
                      +...+.+++++...|+|..+.......+..++.....+. ..   +.....................+..   +-...--
T Consensus         3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~   79 (278)
T COG1277           3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLP---LLAILLG   79 (278)
T ss_pred             hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHH---HHHHHHc
Confidence            577889999999999998887766555555555555542 11   1111111000111111111111111   1111112


Q ss_pred             hHHHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHh---hhhhhccccccch---hHHHHHHHHHHHHHH
Q 016645          140 MKVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISG---TICYFMVRLHPGF---IHYLFFVLCLYASVA  205 (385)
Q Consensus       140 ~~v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~---~i~y~~~g~~~~~---~~f~~~~l~l~l~~~  205 (385)
                      -.++.+|+.+|.        .+...-+.||.+..+....+..++..   .......|...+.   .....+....++...
T Consensus        80 ~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (278)
T COG1277          80 ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGL  159 (278)
T ss_pred             cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence            234555666655        57788899999988766555555444   2233444544433   245677777888888


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccC------CCCCCccccccccccccHHHHHHHHHHHHhhCCCc
Q 016645          206 VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRL------PNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW  279 (385)
Q Consensus       206 ~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~  279 (385)
                      ...+++.+++...++...+..++..+.....+..+....      ....|   +...+...+|..+..+......... .
T Consensus       160 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~  235 (278)
T COG1277         160 VLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQS-G  235 (278)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccc-c
Confidence            889999999999999988888877766666554444332      11111   1122677888888877755433211 0


Q ss_pred             ccCCCCCCCCccHHHHHhhhhCccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645          280 FDNQSPDLPKIPGEYVLENVFQIDV-RRSKWIDLSVIFSMIISYRIIFFVMIKISE  334 (385)
Q Consensus       280 ~~~~~~~~~~~~g~~~L~~~~g~~~-~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~  334 (385)
                      +.    +    .+       .+... ....|.++.+++++.+++..++++..++++
T Consensus       236 ~~----~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d  276 (278)
T COG1277         236 FS----D----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD  276 (278)
T ss_pred             cc----c----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            00    0    00       11111 124789999999999999999999777664

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.72  E-value=0.0069  Score=54.15  Aligned_cols=247  Identities=10%  Similarity=-0.009  Sum_probs=133.6

Q ss_pred             CHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCch---h--hhhhhhHHHHHHHHHHHHhhhhhh
Q 016645           60 SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN---S--ILARGSCASFVFGFVTFMSIGGFP  134 (385)
Q Consensus        60 s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~---~--i~~~~~~l~~~~~~~~~~~~~~~~  134 (385)
                      ++++.+..+.+-.+..+.-.+.....-.+..++-+++.+.++-.+-++.+   +  ..+....++............++-
T Consensus         3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~   82 (268)
T COG4587           3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW   82 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888988888888888887777777777777777777755433222   1  222222222222111112122222


Q ss_pred             hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHH---hhhhhhcc-c---cccchhHHHHHHHHHHHHHHHH
Q 016645          135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFIS---GTICYFMV-R---LHPGFIHYLFFVLCLYASVAVV  207 (385)
Q Consensus       135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~---~~i~y~~~-g---~~~~~~~f~~~~l~l~l~~~~~  207 (385)
                      .+  |+++-.-|-.-..-+|..|+..+...+.+..+...+.+   .+..|.+. |   .-++......+.+.+.+....-
T Consensus        83 ef--~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~  160 (268)
T COG4587          83 EF--EKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLR  160 (268)
T ss_pred             HH--HHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            22  22222222222223555666665555544333221111   11122222 2   1123334444444443333333


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC
Q 016645          208 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL  287 (385)
Q Consensus       208 ~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~  287 (385)
                      -.+-..+++.+=-.+.|+.++........+.||.+.|++-.|+  |..-+--..|+-|...-                  
T Consensus       161 F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~------------------  220 (268)
T COG4587         161 FLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYT------------------  220 (268)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhcc------------------
Confidence            3444455555444566888888888999999999999999998  54434444555554221                  


Q ss_pred             CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645          288 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED  335 (385)
Q Consensus       288 ~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~  335 (385)
                          ....+   .|-......|.++++.+++..++-++.-+..|+..+
T Consensus       221 ----P~~ll---vGk~s~~~il~al~v~~~Wl~im~~l~~~lWrrgl~  261 (268)
T COG4587         221 ----PVMLL---VGKYSGAQILKALLVQIGWLLIMWLLSRWLWRRGLK  261 (268)
T ss_pred             ----HHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11222   121111238888999999999998888887776543

>TIGR01190 ccmB heme exporter protein CcmB

Probab=97.67  E-value=0.0037  Score=55.52  Aligned_cols=154  Identities=12%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             HHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-hHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHh
Q 016645           69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMKVFQRER  147 (385)
Q Consensus        69 ~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~~e~~v~~rE~  147 (385)
                      .+|+++.-+|++.....-++..++...++..-   .+.+.+-.+... |.+.....+....+.   .      +.|.+|+
T Consensus         2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la---~gp~~~~l~~~apgilWva~lfa~ll~l---~------rlF~~d~   69 (211)
T TIGR01190         2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFG---VGPELKLLSRIAPGIVWVGALLSSLLSL---D------RLFRDDF   69 (211)
T ss_pred             cHHHHHHHHcccchHHHHHHHHHHHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHHHHh---h------HHHHHHH
Confidence            58999999999887766655555555554443   344444344433 344433333332222   2      3677777


Q ss_pred             hCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016645          148 LNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP  219 (385)
Q Consensus       148 ~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~  219 (385)
                      ++|.        .+....+++|.++......+.-++..-+.-.+.|++.  .....+.+++.+.......+|.+.++++-
T Consensus        70 e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~  147 (211)
T TIGR01190        70 EDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTV  147 (211)
T ss_pred             hCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7775        3788899999999987776666666666666777754  34466777888888888888888888755


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 016645          220 NFLMGIITGAGIQGIFM  236 (385)
Q Consensus       220 ~~~~a~~~~~~~~~~~~  236 (385)
                      +........+++..|+.
T Consensus       148 g~r~~~~Ll~lL~lPl~  164 (211)
T TIGR01190       148 GLKRGGLLLSLLVLPLY  164 (211)
T ss_pred             hccCCchHHHHHHHHHH
Confidence            43333334444444433

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=97.20  E-value=0.17  Score=46.29  Aligned_cols=187  Identities=12%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhHHhhhHHHHHH
Q 016645           69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRE  146 (385)
Q Consensus        69 ~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~e~~v~~rE  146 (385)
                      .+=+++.+.|.+... ..++.+++..++... |... +.+........... ..+.+....++. +...-.||++--.|.
T Consensus         3 l~aE~lK~Krt~~~~-l~l~~Pl~~~ll~~~-~~~~~~~~~~~~~~~~~~~-~~~~~P~~i~i~~~~~~~~E~~~~~~k~   79 (248)
T TIGR03733         3 LKSDFIKLKRTSILW-IHICAPILGSLLFLL-YYSFRGLDNIDIIEGYFQV-LAIVLPLLIGIVCGMVVEQEESAGNFKN   79 (248)
T ss_pred             HHHHHHHHcchhHHH-HHHHHHHHHHHHHHH-HHHhcCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            345566666765444 466666666666544 4332 22211111100000 011111111111 111122222223333


Q ss_pred             hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhh-----hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 016645          147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICY-----FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF  221 (385)
Q Consensus       147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~  221 (385)
                      -.....+...+++||++..+...++..++...+..     ...+-+.+...++...+.+++..+....+.+.++....+.
T Consensus        80 ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~~  159 (248)
T TIGR03733        80 LLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGMG  159 (248)
T ss_pred             HhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34434578899999999887666665443222221     1112233444566677777888888888999999888753


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHH
Q 016645          222 LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQ  270 (385)
Q Consensus       222 ~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al  270 (385)
                       .+..++..    ..++++++.  ..+.+.+|     ++.|..|..+.+
T Consensus       160 -~si~ig~~----g~l~~~~~~--t~lg~~~w-----~~~P~sw~~rl~  196 (248)
T TIGR03733       160 -ASIGIGIV----GTLMAALML--TGLGDKIW-----QYIPWAWGVRLS  196 (248)
T ss_pred             -hhHHHHHH----HHHHHHHHH--hccccCce-----eEeehHHHHHHH
Confidence             33333322    122333332  23433234     446777777765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=97.15  E-value=0.027  Score=55.18  Aligned_cols=137  Identities=10%  Similarity=0.051  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc--cccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 016645          153 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVR--LHPGF--IHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG  228 (385)
Q Consensus       153 ~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g--~~~~~--~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~  228 (385)
                      ++..|++-|.+......++.++.++.+. +..+  +...+  ++|+.+|...++...+.-...-.+..+.+..-  ..+-
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence            8888999999999999999999998887 3433  33333  34888877766655543332222223333222  2222


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccch
Q 016645          229 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSK  308 (385)
Q Consensus       229 ~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~  308 (385)
                      .++.+++-+.+ -+.|.+-.|. |++| .+-. |++.+++++...-|++                         .. +..
T Consensus       317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~-------------------------~~-~~l  366 (382)
T PF12051_consen  317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDT-------------------------CK-GQL  366 (382)
T ss_pred             HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCC-------------------------Cc-ccc
Confidence            22333333444 6778898998 6775 6666 9999999998864432                         22 137


Q ss_pred             hhhHHHHHHHHHHH
Q 016645          309 WIDLSVIFSMIISY  322 (385)
Q Consensus       309 w~~~~iL~~~~i~~  322 (385)
                      .+++++|++++++-
T Consensus       367 g~n~gil~aw~~v~  380 (382)
T PF12051_consen  367 GRNYGILFAWIVVN  380 (382)
T ss_pred             cchHHHHHHHHHHH
Confidence            78899999998864

It is found in bacterial and eukaryotic proteins.

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.05  E-value=0.0018  Score=45.84  Aligned_cols=49  Identities=16%  Similarity=0.322  Sum_probs=43.1

Q ss_pred             CCccHHHHHhhhhCcccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645          288 PKIPGEYVLENVFQIDVR-RSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  337 (385)
Q Consensus       288 ~~~~g~~~L~~~~g~~~~-~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~  337 (385)
                      ...-|+++|+. .|+..+ +.+|..+++|++++++|.++..++|.+.+...
T Consensus         9 ~~tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~   58 (65)
T PF08370_consen    9 NSTLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG   58 (65)
T ss_pred             CCcHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            46789999999 899765 46999999999999999999999999987654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.94  E-value=0.087  Score=61.64  Aligned_cols=141  Identities=11%  Similarity=0.043  Sum_probs=93.2

Q ss_pred             hhhhhhHHhhhHHHHHH--hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 016645          130 IGGFPSFVEDMKVFQRE--RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV  207 (385)
Q Consensus       130 ~~~~~~~~~e~~v~~rE--~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~  207 (385)
                      ...+-..+.||..=.||  +--|+ +.+.|++|.++..+...++.+++.+++..  .+--.....+...++.+++..+..
T Consensus       668 ~~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~  744 (2272)
T TIGR01257       668 SMTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTAT  744 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHH
Confidence            33456678888888888  44555 88999999999998777776655544432  221122334556666777777788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc-CCCCCCccccccccccccHHHHHHHHHHHHh
Q 016645          208 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFR-LPNDIPKPVWRYPMSYLSFHYWALQGQYQND  274 (385)
Q Consensus       208 ~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~lp~~~w~~~l~~isp~~y~~~al~~ne  274 (385)
                      ..++.+++.++.+...|..+++++...+.+.-.++. -.+.++.. ..+.++-+||...++..-....
T Consensus       745 I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~-~~~~~sL~sp~af~~g~~~i~~  811 (2272)
T TIGR01257       745 IMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAD-LKTAVSLLSPVAFGFGTEYLVR  811 (2272)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence            899999999999999999999988766554332211 12344432 2233677788777765544433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.098  Score=45.73  Aligned_cols=144  Identities=14%  Similarity=0.159  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-hHHHHHHHHHHHHhhhhhhhHHhhhH
Q 016645           63 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMK  141 (385)
Q Consensus        63 ~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~~e~~  141 (385)
                      ..++.+.+|+.|.-+|.+.....-+......-.+++.   .+|.+.+-..... |++.....+....   +.     | .
T Consensus         2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~---~vGpd~~~la~iaPgilWia~lLA~lL---~l-----~-r   69 (221)
T COG2386           2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPL---AVGPDPQLLARIAPGILWIAALLASLL---GL-----E-R   69 (221)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---ccCCchhHHHHhcchHHHHHHHHHHHH---hH-----H-H
Confidence            3567899999999999988776655555554444443   3455433333322 3444433332222   22     2 2


Q ss_pred             HHHHHhhCCCC--------chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016645          142 VFQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA  213 (385)
Q Consensus       142 v~~rE~~~g~Y--------~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~  213 (385)
                      .|++|+.+|.-        ....-+.+|++++.....+.-++.+-+++.+.+.+.  ..+....+++.+.......+|..
T Consensus        70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~--~~~~~~~ltLllGtp~ls~~ga~  147 (221)
T COG2386          70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV--GALGALALTLLLGTPALSFLGAV  147 (221)
T ss_pred             HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH--hHHHHHHHHHHhcchHHHHHHHH
Confidence            78899999873        566788999999988888888888888888888764  55666777777777666666666


Q ss_pred             HHHhcCC
Q 016645          214 IASIVPN  220 (385)
Q Consensus       214 i~~~~~~  220 (385)
                      .+++.-+
T Consensus       148 gaALtv~  154 (221)
T COG2386         148 GAALTVG  154 (221)
T ss_pred             HHHHHhc
Confidence            6665433

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=96.55  E-value=0.39  Score=42.16  Aligned_cols=89  Identities=17%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             HHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhh---hhcccc-ccchhH----HHHHHHHHHHHHH
Q 016645          142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTIC---YFMVRL-HPGFIH----YLFFVLCLYASVA  205 (385)
Q Consensus       142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~---y~~~g~-~~~~~~----f~~~~l~l~l~~~  205 (385)
                      .+.+|+++|.        .+...++.+|.++.....++..++...+.   ..+.+. +.+...    ...+.+..++...
T Consensus        69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
T PF12730_consen   69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL  148 (232)
T ss_pred             HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence            3445555554        37889999999998776666555533332   223332 222222    2233334444444


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645          206 VVESLMMAIASIVPNFLMGIITGAGI  231 (385)
Q Consensus       206 ~~~~lg~~i~~~~~~~~~a~~~~~~~  231 (385)
                      ....+ .+++...+|...+..++-+.
T Consensus       149 ~~~~~-~~i~~~~~~~~~~i~~~~~~  173 (232)
T PF12730_consen  149 FISLL-LFISSLFRNSIVAIIISILL  173 (232)
T ss_pred             HHHHH-HHHHHHHhhHHHHHHHHHHH
Confidence            44445 77888888866665544443

>COG1511 Predicted membrane protein [Function unknown]

Probab=96.44  E-value=0.07  Score=57.15  Aligned_cols=148  Identities=13%  Similarity=0.070  Sum_probs=106.1

Q ss_pred             hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 016645          147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGII  226 (385)
Q Consensus       147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~  226 (385)
                      ...+.+....|++++.+..+....++..+-....+++.|....  .-+.+++..+.+.+++..+-..+..++-  ..+..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~  685 (780)
T COG1511         610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF  685 (780)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence            6777889999999999999999999998887777777776543  3334444444555555555555555555  45666


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCccccc
Q 016645          227 TGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRR  306 (385)
Q Consensus       227 ~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~  306 (385)
                      ++.++++.++..+|-..|....|. +++. ++..-|++|++.++...-                         .|... .
T Consensus       686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------------~~~~~-~  737 (780)
T COG1511         686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------------GGPIP-S  737 (780)
T ss_pred             HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------------ccCch-H
Confidence            777788888889999999999998 4554 999999999977653311                         11111 2


Q ss_pred             chhhhHHHHHHHHHHHHHHH
Q 016645          307 SKWIDLSVIFSMIISYRIIF  326 (385)
Q Consensus       307 ~~w~~~~iL~~~~i~~~~l~  326 (385)
                      ..|.+++++.++.++|++..
T Consensus       738 ~~~~~~~~~~~~~i~~~~~~  757 (780)
T COG1511         738 NLWSGLLALIGFLILFIIGG  757 (780)
T ss_pred             HHhhhHHHHHHHHHHHHHHH
Confidence            47888888888888887733

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=95.99  E-value=1.1  Score=40.46  Aligned_cols=152  Identities=11%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             CchHHHHHHHHHHH-hhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016645          152 YGVTAFVIGNTLSA-MPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAG  230 (385)
Q Consensus       152 Y~~~~y~~a~~l~~-~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~  230 (385)
                      ++...+.+.+-+.. ....++.+++..+......+.+.+..+++.+.+.+.+......++.+++++++=-......+.  
T Consensus        71 v~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~--  148 (229)
T PF06182_consen   71 VNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS--  148 (229)
T ss_pred             CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence            35556666655543 222233333333333334567777788888888888888888888888887743222222222  


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhh
Q 016645          231 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI  310 (385)
Q Consensus       231 ~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~  310 (385)
                       .....+++|...|.+-.|+ ..+..+.++-|+.|....=..                      ++-   |-.   +.+.
T Consensus       149 -~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P~~----------------------~ll---g~~---~~~~  198 (229)
T PF06182_consen  149 -YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVPAR----------------------ILL---GKI---SPLF  198 (229)
T ss_pred             -HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHHHH----------------------HHc---CCC---cHHH
Confidence             3334459999999999998 344445666888887554322                      111   111   1344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645          311 DLSVIFSMIISYRIIFFVMIKISED  335 (385)
Q Consensus       311 ~~~iL~~~~i~~~~l~~~~L~~~~~  335 (385)
                      .++...++++++.+++.+..|+-.|
T Consensus       199 ~~~~q~~~~~v~~~l~~~~w~~glr  223 (229)
T PF06182_consen  199 ILLIQAIWILVLFLLSRLLWRKGLR  223 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555567777777777776665443

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=94.93  E-value=4.1  Score=39.85  Aligned_cols=211  Identities=12%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCC---chhhhhh------hhHH---HHHHHHHHHHhhhhhh-------hHHhhhHH
Q 016645           82 YYWLRLVIYVVVTICIGTIYLNVGTG---YNSILAR------GSCA---SFVFGFVTFMSIGGFP-------SFVEDMKV  142 (385)
Q Consensus        82 ~~~~~~~~~i~~~l~~G~if~~~~~~---~~~i~~~------~~~l---~~~~~~~~~~~~~~~~-------~~~~e~~v  142 (385)
                      .++.=.+-..++++++|.+|.++++.   ...+.+.      .+..   |+...+...+.+.+++       ..-+||+-
T Consensus       299 ~lI~W~v~~fllglvygs~fg~l~~fL~~n~avrqave~~e~ag~le~~Flv~lfsIisil~a~~~V~~vlkl~geEr~n  378 (536)
T COG3559         299 SLILWTVGLFLLGLVYGSVFGGLGDFLGDNTAVRQAVERMEGAGALEQAFLVLLFSIISILAAAFAVSLVLKLHGEERGN  378 (536)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence            33344555678899999999877542   1111111      0111   2222222221111111       22345544


Q ss_pred             HHHHhhCCCCchHHHHHHHHHHHhh---HHHHHHHHHhhhhhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016645          143 FQRERLNGHYGVTAFVIGNTLSAMP---FLIMITFISGTICYFMVRLHPG--FIHYLFFVLCLYASVAVVESLMMAIASI  217 (385)
Q Consensus       143 ~~rE~~~g~Y~~~~y~~a~~l~~~p---~~~i~~~i~~~i~y~~~g~~~~--~~~f~~~~l~l~l~~~~~~~lg~~i~~~  217 (385)
                      -...-.++..+....+.+.....+.   .+.+.+++-..+.|.|.+-..+  ......--+.....++...++...+.-+
T Consensus       379 r~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll~GL  458 (536)
T COG3559         379 RAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLLFGL  458 (536)
T ss_pred             hHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            3333333334544444444443332   3333444445556665432211  1122222222333333344455555555


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHh
Q 016645          218 VPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE  297 (385)
Q Consensus       218 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~  297 (385)
                      +|-..--.-.--++..++..++|    +-++|+  |   +-.+||+.|.-+                             
T Consensus       459 aPr~t~laWlyl~~~~fvtyLg~----Llslpe--w---l~nlSp~~hip~-----------------------------  500 (536)
T COG3559         459 APRFTPLAWLYLIVGFFVTYLGG----LLSLPE--W---LLNLSPFAHIPR-----------------------------  500 (536)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHH----hcccHH--H---HhcCCccccCcc-----------------------------
Confidence            66443322222223333344455    234666  4   667777766311                             


Q ss_pred             hhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645          298 NVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE  334 (385)
Q Consensus       298 ~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~  334 (385)
                        .+.++. +.| .+..++++.+....+++...|+|+
T Consensus       501 --lpved~-n~~-pll~l~ii~vaL~~lGf~~yrRRd  533 (536)
T COG3559         501 --LPVEDF-NAV-PLLWLLIIDVALITLGFMAYRRRD  533 (536)
T ss_pred             --CCcccc-chH-HHHHHHHHHHHHHHhhHHHHhhhc
Confidence              122211 233 566777777777888887776654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=94.28  E-value=0.71  Score=54.43  Aligned_cols=95  Identities=9%  Similarity=-0.055  Sum_probs=69.9

Q ss_pred             hhHHhhhHHHHH--HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhcc--ccccchhHHHHHHHHHHHHHHHHHH
Q 016645          134 PSFVEDMKVFQR--ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMV--RLHPGFIHYLFFVLCLYASVAVVES  209 (385)
Q Consensus       134 ~~~~~e~~v~~r--E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~--g~~~~~~~f~~~~l~l~l~~~~~~~  209 (385)
                      ...+.||..=.|  ...+|. ++.+|+++..+.++...++..+++.++.+..-  ++. +...+...++++++..+++.-
T Consensus      1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257      1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred             eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence            344667766544  577888 99999999999999888777777665554332  222 334566667778888899999


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 016645          210 LMMAIASIVPNFLMGIITGAG  230 (385)
Q Consensus       210 lg~~i~~~~~~~~~a~~~~~~  230 (385)
                      +.++++.++.+...|.....+
T Consensus      1777 ~tYl~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257      1777 MMYPASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred             HHHHHHHhhCCchhHHHHHHH
Confidence            999999999999888765443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.10  E-value=6.2  Score=35.29  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhc---cccccchhH--HHHHHHHHHHHHHHHHHH
Q 016645          144 QRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFM---VRLHPGFIH--YLFFVLCLYASVAVVESL  210 (385)
Q Consensus       144 ~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~---~g~~~~~~~--f~~~~l~l~l~~~~~~~l  210 (385)
                      .-|+++|.        ++..-.++||+..-+....+..++....++..   .|...+...  ++.....-++.+....++
T Consensus        76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l  155 (239)
T COG4200          76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL  155 (239)
T ss_pred             HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            55777666        46778899999998887777766665554432   344433322  222233333344444456


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCc
Q 016645          211 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKI  290 (385)
Q Consensus       211 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~  290 (385)
                      =...+--++|...|..++...  |..+.    ...+++|.  |   +.|-+|..-.++.    .                
T Consensus       156 Q~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~~~~~~----~----------------  204 (239)
T COG4200         156 QFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPILPMFSG----S----------------  204 (239)
T ss_pred             HHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhhhhhcc----c----------------
Confidence            666677778887777766655  33322    23344665  4   5555665511111    0                


Q ss_pred             cHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645          291 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED  335 (385)
Q Consensus       291 ~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~  335 (385)
                               .+      .-.++.++.+..+++.+.+++.+++++.
T Consensus       205 ---------l~------v~~~i~~~~v~~ll~~l~s~l~~~r~~v  234 (239)
T COG4200         205 ---------LS------VETGILFLGVLALLFLLSSFLFFKRKKV  234 (239)
T ss_pred             ---------cc------cchhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                     11      1234667777778888888887776654

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=91.92  E-value=8.1  Score=38.19  Aligned_cols=78  Identities=13%  Similarity=0.019  Sum_probs=52.7

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHhhhhh---------hcc--ccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Q 016645          152 YGVTAFVIGNTLSAMPFLIMITFISGTICY---------FMV--RLHPGFIHYLFFVLCLYASVAV-VESLMMAIASIVP  219 (385)
Q Consensus       152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y---------~~~--g~~~~~~~f~~~~l~l~l~~~~-~~~lg~~i~~~~~  219 (385)
                      -++..++.+|++.-..+.+++..+.....+         ...  ++......+..+.+.+++..+. ..+++.++++.+.
T Consensus       227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~  306 (407)
T COG1668         227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG  306 (407)
T ss_pred             cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            489999999999999888888666655552         111  1222233344444444444444 4458999999999


Q ss_pred             ChHHHHHHHH
Q 016645          220 NFLMGIITGA  229 (385)
Q Consensus       220 ~~~~a~~~~~  229 (385)
                      +...|+....
T Consensus       307 ~~k~aq~~~~  316 (407)
T COG1668         307 SIKEAQTLIS  316 (407)
T ss_pred             CHHHHHHHhh
Confidence            9999988777

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=87.25  E-value=23  Score=32.20  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHhhhhhh---ccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016645          152 YGVTAFVIGNTLSAMPFLIMITFISGTICYF---MVRLH-PGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT  227 (385)
Q Consensus       152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~---~~g~~-~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~  227 (385)
                      .+....++||++.-....++..+++.+..+.   +.|.. .+...++...+..++..+....+-++++.-.     +..+
T Consensus        80 vs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~l~ls~~~-----g~~~  154 (241)
T TIGR03732        80 VDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFLARKF-----GMFV  154 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence            4678899999998776665555554422221   22311 1223344445555555555566666665443     2222


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHH
Q 016645          228 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY  271 (385)
Q Consensus       228 ~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~  271 (385)
                      +.++.....++.|.+...+   + .|     ++.|..|..+.+.
T Consensus       155 si~ig~~~~li~g~~~~~~---~-~w-----~~~P~s~~~rl~~  189 (241)
T TIGR03732       155 SILVNLVLGLIFGIVLATK---S-FW-----WLFPYSWPSRLMC  189 (241)
T ss_pred             HHHHHHHHHHHHHHHHHcc---C-Ce-----EEechHHHHHHHh
Confidence            2222222233345543222   2 34     4678999988885

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=81.43  E-value=24  Score=38.76  Aligned_cols=101  Identities=10%  Similarity=0.024  Sum_probs=72.7

Q ss_pred             hhhHHhhhHHHHH--HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 016645          133 FPSFVEDMKVFQR--ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL  210 (385)
Q Consensus       133 ~~~~~~e~~v~~r--E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~l  210 (385)
                      ....+.||..-.|  +...|+ ++.+|+++..+.+.+..++..++...+++.+ | ......+....+..++.......+
T Consensus       316 ~~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~-~~~~~~~~~~~~~~~l~~~s~i~l  392 (885)
T KOG0059|consen  316 LLSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIF-G-FFAGNNTVIILLLLLLYIRSAIPL  392 (885)
T ss_pred             HhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhee-e-cccccchHHHHHHHHHHHHHHHHH
Confidence            3445666666555  477777 9999999999999988887777666665543 3 223445666667777777878899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHH
Q 016645          211 MMAIASIVPNFLMGIITGAGIQGIFM  236 (385)
Q Consensus       211 g~~i~~~~~~~~~a~~~~~~~~~~~~  236 (385)
                      ..+.+.+++....+..+..++.....
T Consensus       393 ~y~~s~~f~~~~~~~v~~~i~~~~s~  418 (885)
T KOG0059|consen  393 TYILSFIFSKESTASVILSIYNLISG  418 (885)
T ss_pred             HHHHHHHhcCCcCceeehhhHHHHHH
Confidence            99999999888888777665544443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00