Citrus Sinensis ID: 016680

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MPRSRGLEMPQRQSPRRPHQLRTSSSDSDPPHHRPIADRSPKIGDRRSPRGAPHSDPINQKKLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTKKPEVPGTVEVVEQHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGFASGKRKGSGIKMFGDLWKKKGHK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHccccccHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHcccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccc
mprsrglempqrqsprrphqlrtsssdsdpphhrpiadrspkigdrrsprgaphsdpinqkklGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEkktkkpevpgtvevveqhslpeiqesettkndpkdevaeenqpetdvFEMSVEkstvepevefSQQTFKeeketksinvsteppaepepekvsiheLTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAGGvemngripercgsmdkhfggvfepltgsyagfvgspgmaddldggfasgkrkgsgikMFGDLWKKKGHK
mprsrglempqrqsprrphqlrtsssdsdpphhrpiadrspkigdrrsprgaphsdpinqkkLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAqeklekktkkpevpgtvevveqhslpeiqesettkndpkdevaeenqpetdvFEMSVEKStvepevefsqqtfkeeketksinvsteppaepepekvsihELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGfasgkrkgsgikmfgdlwkkkghk
MPRSRGLEMPQRQSPRRPHQLRTsssdsdpphhRPIADRSPKIGDRRSPRGAPHSDPINQKKLGTRIADLESQLGQAQEELKNLKDQLasaeaakkeaqeklekktkkpeVPGTVEVVEQHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQlkekleaaegakkalememkklRVQTDQWKKaadaaaSILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGFASGKRKGSGIKMFGDLWKKKGHK
************************************************************************************************************************************************************************************************************************************************************************************************************WKKAADAAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSP**********************F**********
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WKK****
**********************************PIADRSPK************SDPINQKKLGTRIADLESQLGQAQEELKNLKDQLA**********************PGTVEVVEQHSLPEIQ*********************DVFEM******************************************SIHELTLTKDEINLLQNKLDEKEKQLEGMAQEN**************************SLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRV**********AAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGFASGKRKGSGIKMFGDLWKKKGHK
*************************************************************K*GTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTKKPEVPGTVEVVEQHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAGGVE*N*****RCGS***HFGGVFEP********************************K*****W******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPRSRGLEMPQRQSPRRPHQLRTSSSDSDPPHHRPIADRSPKIGDRRSPRGAPHSDPINxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPEVPGTVEVVEQHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADAAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGFASGKRKGSGIKMFGDLWKKKGHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
Q9M9F9324 Interactor of constitutiv yes no 0.822 0.975 0.489 1e-75
Q8LE98344 Interactor of constitutiv no no 0.880 0.982 0.497 2e-75
Q9LSS5564 Interactor of constitutiv no no 0.388 0.264 0.291 2e-11
Q9ZQC5 583 Interactor of constitutiv no no 0.247 0.162 0.421 1e-09
Q8VYU8396 Interactor of constitutiv no no 0.572 0.555 0.299 1e-08
>sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=3 SV=2 Back     alignment and function desciption
 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/388 (48%), Positives = 246/388 (63%), Gaps = 72/388 (18%)

Query: 2   PRSRGLEMPQRQSPRRPHQLRTSSSDSDPPHH--RPIADRSPKIG-DRRSPR-GAPHSDP 57
           P  RG E+PQRQSPR    L ++SSD   PHH  RPI DRSPK+G DRRSPR G PH+DP
Sbjct: 4   PSIRGSELPQRQSPRLRTSLLSTSSD---PHHLSRPITDRSPKLGLDRRSPRSGGPHTDP 60

Query: 58  INQKKLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE-KKTKKPEVPGTVE 116
           ++QKKLG+RI+ LESQLGQAQEEL+ LK QLA AEAAKK AQE+L  KK+KKP  P    
Sbjct: 61  LSQKKLGSRISGLESQLGQAQEELRLLKQQLAKAEAAKKRAQEELHRKKSKKPNTPA--- 117

Query: 117 VVEQHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKE 176
                  PE           +D++  +   ETDVFE+  EK+                  
Sbjct: 118 -------PE-----------RDDIPGDGHQETDVFEVLDEKAK----------------- 142

Query: 177 TKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236
                         E EK    EL   +D+IN+L+ +L + EK+   +++EN++LK QL 
Sbjct: 143 --------------ESEKTKNDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLK 188

Query: 237 EASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRV 296
           +  + +S A+ +++E+   ++++GEE++ S     +LK+KLE+ E AK+ LE EMKKL+V
Sbjct: 189 KTDTEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKV 248

Query: 297 QTDQWKKAADAAASILAGGVEMNGRIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADD 356
           QT+QW+KAADAAA++L+GGVEMNGR  E+CGSM+KHF G           FVGSPGMADD
Sbjct: 249 QTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHFAGR----------FVGSPGMADD 298

Query: 357 LDGGFASGKRKGSGIKMFGDLWKKKGHK 384
            D G  SGKRK SG KMFGDLWKKKG K
Sbjct: 299 SDDG--SGKRKSSGKKMFGDLWKKKGQK 324
Acts as a scaffold, mediating interaction of ROPs with different proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LE98|ICR1_ARATH Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYU8|ICR5_ARATH Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
147825346376 hypothetical protein VITISV_002134 [Viti 0.976 0.997 0.676 1e-116
296086776362 unnamed protein product [Vitis vinifera] 0.940 0.997 0.654 1e-111
356556916380 PREDICTED: interactor of constitutive ac 0.984 0.994 0.621 1e-111
356549540377 PREDICTED: interactor of constitutive ac 0.958 0.976 0.625 1e-110
224061324341 predicted protein [Populus trichocarpa] 0.888 1.0 0.625 1e-108
255578532383 conserved hypothetical protein [Ricinus 0.986 0.989 0.597 1e-104
359494416346 PREDICTED: interactor of constitutive ac 0.898 0.997 0.636 1e-104
145337709324 ROP interactive partner 2 [Arabidopsis t 0.822 0.975 0.489 6e-74
18394444344 interactor of constitutive active ROPs 1 0.880 0.982 0.497 1e-73
110738443344 hypothetical protein [Arabidopsis thalia 0.880 0.982 0.497 1e-73
>gi|147825346|emb|CAN73256.1| hypothetical protein VITISV_002134 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/377 (67%), Positives = 296/377 (78%), Gaps = 2/377 (0%)

Query: 9   MPQRQSPRRPHQLRTSSSDSDPPHHRPIADRSPKIGDRRSPRGAPHSDPINQKKLGTRIA 68
           MPQRQSPR   QLRTSSSDSDP HHRPI DRSPK+GDRRSPRGA  SD +NQKKLGTRIA
Sbjct: 1   MPQRQSPRGSLQLRTSSSDSDPLHHRPITDRSPKVGDRRSPRGA-QSDSVNQKKLGTRIA 59

Query: 69  DLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTKKPEVPGTVEVVEQHSLPEIQE 128
           DLESQLGQA EELKNLK QLASAEAAKKEAQE+LEKK   P     +E+ E+HS  E  +
Sbjct: 60  DLESQLGQALEELKNLKFQLASAEAAKKEAQEELEKKANMPITHDAMEIQEKHSPTEAYK 119

Query: 129 SETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPA 188
           S    +   DE  ++NQ ETDVFE+ VEK  VE +V+ SQ + +E+K +K  ++STEPPA
Sbjct: 120 SNKIDSSHPDEAPDDNQQETDVFEVPVEKVAVEAKVDLSQLSDQEDKRSKPTDISTEPPA 179

Query: 189 EPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKE 248
             EPEKVS  EL +  DEINLL+ KL+EKEK+LEG  QE + LKKQLNEA+S I   + +
Sbjct: 180 ILEPEKVSFEELAMKNDEINLLKAKLEEKEKELEGSCQEIEGLKKQLNEAASEIVLVRTK 239

Query: 249 KEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAA 308
           +EEM   L++LGE+++A+KA   QLKEKLEA EG K+ALE EMKKLRVQT+QW+KAADAA
Sbjct: 240 EEEMALRLSQLGEDLKANKANEAQLKEKLEAVEGVKEALEAEMKKLRVQTEQWRKAADAA 299

Query: 309 ASILAGGVEMNG-RIPERCGSMDKHFGGVFEPLTGSYAGFVGSPGMADDLDGGFASGKRK 367
           A++LAGGVEMNG RI ERCGSMDKHFGGVFE   G YAGFVGSP +ADD D GF SGKRK
Sbjct: 300 AAVLAGGVEMNGRRISERCGSMDKHFGGVFESSAGGYAGFVGSPVLADDFDDGFGSGKRK 359

Query: 368 GSGIKMFGDLWKKKGHK 384
           GSGIKMFGDLWK+K  K
Sbjct: 360 GSGIKMFGDLWKRKSQK 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086776|emb|CBI32925.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556916|ref|XP_003546766.1| PREDICTED: interactor of constitutive active ROPs 1-like isoform 1 [Glycine max] gi|356556918|ref|XP_003546767.1| PREDICTED: interactor of constitutive active ROPs 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356549540|ref|XP_003543151.1| PREDICTED: interactor of constitutive active ROPs 1-like isoform 1 [Glycine max] gi|356549542|ref|XP_003543152.1| PREDICTED: interactor of constitutive active ROPs 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224061324|ref|XP_002300426.1| predicted protein [Populus trichocarpa] gi|222847684|gb|EEE85231.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578532|ref|XP_002530129.1| conserved hypothetical protein [Ricinus communis] gi|223530354|gb|EEF32245.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359494416|ref|XP_002271827.2| PREDICTED: interactor of constitutive active ROPs 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|145337709|ref|NP_177964.2| ROP interactive partner 2 [Arabidopsis thaliana] gi|374095407|sp|Q9M9F9.2|ICR4_ARATH RecName: Full=Interactor of constitutive active ROPs 4; AltName: Full=ROP interactive partner 2 gi|332197984|gb|AEE36105.1| ROP interactive partner 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18394444|ref|NP_564015.1| interactor of constitutive active ROPs 1 [Arabidopsis thaliana] gi|42571515|ref|NP_973848.1| interactor of constitutive active ROPs 1 [Arabidopsis thaliana] gi|51316870|sp|Q8LE98.1|ICR1_ARATH RecName: Full=Interactor of constitutive active ROPs 1 gi|21553674|gb|AAM62767.1| unknown [Arabidopsis thaliana] gi|89000951|gb|ABD59065.1| At1g17140 [Arabidopsis thaliana] gi|332191426|gb|AEE29547.1| interactor of constitutive active ROPs 1 [Arabidopsis thaliana] gi|332191427|gb|AEE29548.1| interactor of constitutive active ROPs 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738443|dbj|BAF01147.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2020342344 ICR1 "AT1G17140" [Arabidopsis 0.656 0.732 0.353 1.6e-38
TAIR|locus:2032095324 RIP4 "AT1G78430" [Arabidopsis 0.604 0.716 0.370 1.2e-35
UNIPROTKB|Q8VXD2601 p70 "P70 protein" [Nicotiana t 0.653 0.417 0.265 4.8e-12
TAIR|locus:2083951396 RIP3 "ROP interactive partner 0.692 0.671 0.231 8.9e-07
TAIR|locus:2061758583 RIP2 "ROP interactive partner 0.760 0.500 0.216 1.3e-06
TAIR|locus:2144040 564 RIP5 "ROP interactive partner 0.682 0.464 0.220 6.1e-06
ZFIN|ZDB-GENE-030521-29 424 cnp "2',3'-cyclic nucleotide 3 0.393 0.356 0.280 8.1e-06
UNIPROTKB|Q8IIG7 1070 PF11_0207 "Uncharacterized pro 0.395 0.142 0.279 1.8e-05
TAIR|locus:2093462726 MFP1 "MAR binding filament-lik 0.364 0.192 0.265 1.8e-05
DICTYBASE|DDB_G0269086 937 DDB_G0269086 "alpha/beta hydro 0.346 0.141 0.339 3.2e-05
TAIR|locus:2020342 ICR1 "AT1G17140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 94/266 (35%), Positives = 148/266 (55%)

Query:   125 EIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPE-VEFSQQTFKEEKETKSINVS 183
             ++  +E  K   +DE+ ++++    +    VE+S  E E ++  +     +KET    V 
Sbjct:    87 QLANAEAVKKQAQDELHKKSKKPNPLAR--VEESATEAERIDRDEIPGDVQKETDVFEVP 144

Query:   184 TEPPAEPEPEKVS----IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS 239
              E  A  E E  S      +L   +DEI +L+ +L + EK+ E + +EN+SLK QL++++
Sbjct:   145 VEKIAVEEEELRSGNDEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSA 204

Query:   240 SNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQXXXXXXXXXXXXXXXXXXXXXXRVQTD 299
             S IS  +  ++EM   ++++GEE++ S+A+                         RVQT+
Sbjct:   205 SEISNVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTE 264

Query:   300 QWKKXXXXXXSILAGGVEMNGRIPERCGSMDKHF-GGVFEPLTGSYAGFVGSPGMADDLD 358
             QW+K      ++L+G  EMNGR  +R GS +K++ GG F+P     AGF+  PGMADD D
Sbjct:   265 QWRKAADAAAAVLSGEFEMNGR--DRSGSTEKYYAGGFFDPS----AGFMDPPGMADDYD 318

Query:   359 GGFASGKRKGSGIKMFGDLWKKKGHK 384
              G  SGKRK SG+KMFG+LW+KKG K
Sbjct:   319 DGLGSGKRKSSGMKMFGELWRKKGQK 344
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0090404 "pollen tube tip" evidence=IDA
GO:2000012 "regulation of auxin polar transport" evidence=IMP
TAIR|locus:2032095 RIP4 "AT1G78430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
TAIR|locus:2083951 RIP3 "ROP interactive partner 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144040 RIP5 "ROP interactive partner 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030521-29 cnp "2',3'-cyclic nucleotide 3' phosphodiesterase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TAIR|locus:2093462 MFP1 "MAR binding filament-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269086 DDB_G0269086 "alpha/beta hydrolase fold-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M9F9ICR4_ARATHNo assigned EC number0.48960.82290.9753yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
pfam01576 859 pfam01576, Myosin_tail_1, Myosin tail 7e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-05
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 1e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-04
pfam01576 859 pfam01576, Myosin_tail_1, Myosin tail 2e-04
PRK05431 425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 3e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 3e-04
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
TIGR03185650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 6e-04
pfam13851201 pfam13851, GAS, Growth-arrest specific micro-tubul 8e-04
pfam13166 713 pfam13166, AAA_13, AAA domain 0.002
pfam03961450 pfam03961, DUF342, Protein of unknown function (DU 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.003
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.004
COG0172 429 COG0172, SerS, Seryl-tRNA synthetase [Translation, 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information 
 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 25/230 (10%)

Query: 60  QKKLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTKKPEVPGTVEVVE 119
           ++KL  R+ +LE  L   ++E++N+K +L   EA  +E +E L K  +       +  +E
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA------LNDLE 785

Query: 120 QHSLPE-IQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKETK 178
                  I E +   +  ++EV+             +E    E E + ++ T ++E   K
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSR------------IEARLREIEQKLNRLTLEKEYLEK 833

Query: 179 SINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238
            I    E   + + +  SI      + EI  L  K +E E++LE +    + L+ +L + 
Sbjct: 834 EIQELQEQRIDLKEQIKSI------EKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887

Query: 239 SSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALE 288
                  + +  E+ + + +L  +++  +    +LK KLEA E     +E
Sbjct: 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342) Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.25
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 97.09
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.57
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.02
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 93.68
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 93.57
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.56
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 92.77
PRK02224 880 chromosome segregation protein; Provisional 92.21
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 92.04
PF00038312 Filament: Intermediate filament protein; InterPro: 91.82
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 91.53
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 91.17
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 90.09
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.52
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 89.46
PRK11637 428 AmiB activator; Provisional 89.04
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 88.84
PRK11637 428 AmiB activator; Provisional 88.5
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 88.04
PRK09039343 hypothetical protein; Validated 87.9
PF12777 344 MT: Microtubule-binding stalk of dynein motor; Int 87.67
PF13851201 GAS: Growth-arrest specific micro-tubule binding 87.47
PF00038 312 Filament: Intermediate filament protein; InterPro: 86.84
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 86.5
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 86.24
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 86.02
COG4942 420 Membrane-bound metallopeptidase [Cell division and 85.74
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 85.35
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 85.2
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 85.19
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 84.92
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 84.74
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 84.7
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 84.65
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 84.63
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 83.6
COG4942420 Membrane-bound metallopeptidase [Cell division and 83.46
COG2433652 Uncharacterized conserved protein [Function unknow 83.2
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 83.12
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 82.85
PRK10884206 SH3 domain-containing protein; Provisional 82.62
KOG4074383 consensus Leucine zipper nuclear factor [Function 82.49
PF10186 302 Atg14: UV radiation resistance protein and autopha 82.23
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 81.18
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.95
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 80.95
PRK02224 880 chromosome segregation protein; Provisional 80.5
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 80.48
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 80.3
PHA02562562 46 endonuclease subunit; Provisional 80.24
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 80.14
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information 
Probab=97.25  E-value=0.0072  Score=53.81  Aligned_cols=105  Identities=20%  Similarity=0.420  Sum_probs=75.6

Q ss_pred             hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHH----------HHHHHHHHHhhhhhHHHHHhhHHHH
Q 016680          202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQ----------KEKEEMTQSLNKLGEEVQASKAEAI  271 (384)
Q Consensus       202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~----------~~e~e~~~kl~~~~eEl~~s~~r~a  271 (384)
                      .....|..|-..+..+|.++.+|..-|..|..++..+-..+..++          ..-+.+..++..|+++|+.+..+..
T Consensus        18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~   97 (143)
T PF12718_consen   18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLK   97 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence            344555555666666666666666666666665543322222222          2223666799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680          272 QLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD  306 (384)
Q Consensus       272 r~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE  306 (384)
                      .+.++|+-+...-+.+|-=++.|--++++|-+=-+
T Consensus        98 e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   98 ETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999999999999999999965433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-08
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 6e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-05
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 8e-05
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-04
1wle_A 501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 8e-05
2dq0_A 455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 9e-05
2dq3_A 425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 1e-04
1ses_A 421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 41/277 (14%)

Query: 60   QKKLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTKKPEVPGTVEVVE 119
            + +L  +  +LE  L + +  ++  +++    +A KK+ Q+++    ++      +E  E
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ------LEEEE 968

Query: 120  QHSLPEIQESETTKNDPKDEVAEENQPETDVFEMSVEKSTVEPEVEFSQQTFKEEKET-- 177
                    E  T     K    +    E    +++ E+  +E  V        EE+E   
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 178  ---------KSINVSTEPPAEPEPEKVS---------IHELTLTKDEINLLQNKLDEKEK 219
                     +S+    E   + E +              E +   ++I  LQ ++ E + 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 220  QLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKA----------- 268
            QL    +E ++   +L + +S  + A K+  E+   ++ L E++++ KA           
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 269  ---EAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWK 302
               E   LK +LE         + E++    + D  K
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQ-ELRGSDYKDDDDK 1184
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.48
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.36
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 95.08
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 94.7
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.41
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 93.35
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 92.47
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 92.14
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.09
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.33
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 90.67
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 90.05
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 89.36
2i7u_A62 Four-alpha-helix bundle; HOMO dimer, anesthetic bi 87.76
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 87.61
1wt6_A81 Myotonin-protein kinase; coiled-coil, kinase activ 87.59
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.57
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.57
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 84.44
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 83.18
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 80.92
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=95.48  E-value=0.97  Score=38.32  Aligned_cols=39  Identities=10%  Similarity=0.216  Sum_probs=17.1

Q ss_pred             HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680          198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN  236 (384)
Q Consensus       198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~  236 (384)
                      ..|.....+|..|+..+...+.++..+..+...+...+.
T Consensus        20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (284)
T 1c1g_A           20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD   58 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444433
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00